Query 038325
Match_columns 231
No_of_seqs 155 out of 629
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 5.1E-30 1.7E-34 218.6 11.7 101 52-153 7-107 (179)
2 1n1j_A NF-YB; histone-like PAI 100.0 5.2E-29 1.8E-33 190.1 10.6 92 54-145 2-93 (93)
3 2byk_B Chrac-14; nucleosome sl 100.0 6.2E-29 2.1E-33 201.3 10.4 100 54-153 3-102 (128)
4 3b0c_W CENP-W, centromere prot 99.8 1.3E-21 4.4E-26 144.8 7.5 68 59-127 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 7.8E-21 2.7E-25 158.6 8.4 74 60-134 4-77 (154)
6 3b0c_T CENP-T, centromere prot 99.8 2.3E-19 8E-24 142.1 9.3 93 56-150 3-95 (111)
7 1b67_A Protein (histone HMFA); 99.8 6.3E-19 2.1E-23 126.9 8.4 66 60-127 2-67 (68)
8 1id3_B Histone H4; nucleosome 99.7 2.2E-17 7.6E-22 129.0 8.0 85 46-132 14-98 (102)
9 1f1e_A Histone fold protein; a 99.7 3.6E-17 1.2E-21 136.5 9.0 75 51-127 73-147 (154)
10 2byk_A Chrac-16; nucleosome sl 99.7 4E-18 1.4E-22 140.0 2.4 97 56-153 15-115 (140)
11 2hue_C Histone H4; mini beta s 99.7 4.7E-17 1.6E-21 122.6 7.3 78 53-132 3-80 (84)
12 4g92_C HAPE; transcription fac 99.7 2.5E-17 8.6E-22 131.5 3.3 96 37-133 15-113 (119)
13 1tzy_D Histone H4-VI; histone- 99.6 5.6E-16 1.9E-20 120.7 8.1 83 48-132 17-99 (103)
14 2yfw_B Histone H4, H4; cell cy 99.6 9.5E-16 3.2E-20 119.5 7.5 83 48-132 17-99 (103)
15 1n1j_B NF-YC; histone-like PAI 99.6 1.3E-15 4.5E-20 117.3 7.5 80 54-134 13-92 (97)
16 1ku5_A HPHA, archaeal histon; 99.6 4.1E-15 1.4E-19 107.9 8.0 64 60-125 6-69 (70)
17 1jfi_A Transcription regulator 99.3 3.7E-12 1.3E-16 98.4 5.8 77 57-134 8-84 (98)
18 2hue_B Histone H3; mini beta s 99.1 1.6E-10 5.3E-15 86.8 7.5 71 58-128 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.1 2.1E-10 7.3E-15 89.8 6.9 77 49-125 16-98 (100)
20 3nqu_A Histone H3-like centrom 99.0 4.5E-10 1.5E-14 92.7 6.6 79 51-129 52-135 (140)
21 3r45_A Histone H3-like centrom 99.0 4.7E-10 1.6E-14 94.0 6.6 77 51-127 68-149 (156)
22 3nqj_A Histone H3-like centrom 99.0 8.1E-10 2.8E-14 83.8 6.8 70 59-128 2-76 (82)
23 1tzy_C Histone H3; histone-fol 99.0 8.7E-10 3E-14 90.5 6.7 76 53-128 55-133 (136)
24 1taf_B TFIID TBP associated fa 98.8 2.3E-08 7.8E-13 73.7 8.3 65 59-125 5-69 (70)
25 4dra_A Centromere protein S; D 98.7 5.1E-08 1.8E-12 77.9 8.0 77 65-147 32-109 (113)
26 3b0b_B CENP-S, centromere prot 98.6 1.3E-07 4.3E-12 74.8 8.5 76 65-146 24-100 (107)
27 3v9r_A MHF1, uncharacterized p 98.6 1.1E-07 3.9E-12 73.0 7.8 63 65-127 17-80 (90)
28 3vh5_A CENP-S; histone fold, c 98.6 1.3E-07 4.5E-12 78.0 8.2 78 65-148 24-102 (140)
29 2ly8_A Budding yeast chaperone 98.5 9.3E-08 3.2E-12 77.1 5.7 54 79-132 64-117 (121)
30 1taf_A TFIID TBP associated fa 98.5 5.5E-07 1.9E-11 66.0 7.8 61 64-126 5-65 (68)
31 2nqb_C Histone H2A; nucleosome 98.4 1.1E-06 3.6E-11 70.7 8.3 69 57-126 20-88 (123)
32 2l5a_A Histone H3-like centrom 98.4 2E-07 6.7E-12 82.5 3.9 61 66-128 167-227 (235)
33 1f66_C Histone H2A.Z; nucleoso 98.4 1.2E-06 4E-11 71.0 8.0 69 58-126 25-93 (128)
34 1tzy_A Histone H2A-IV; histone 98.3 1.4E-06 4.9E-11 70.6 8.2 69 57-126 22-90 (129)
35 1id3_C Histone H2A.1; nucleoso 98.3 1.3E-06 4.4E-11 71.0 7.6 69 57-126 22-90 (131)
36 2f8n_G Core histone macro-H2A. 98.3 1.8E-06 6E-11 69.2 8.2 69 57-126 19-87 (120)
37 2f8n_K Histone H2A type 1; nuc 98.3 2.5E-06 8.4E-11 70.9 8.0 69 57-126 41-109 (149)
38 2jss_A Chimera of histone H2B. 98.1 6.6E-06 2.2E-10 70.0 7.5 69 58-126 103-171 (192)
39 2l5a_A Histone H3-like centrom 98.1 4.9E-06 1.7E-10 73.6 6.9 72 57-128 8-85 (235)
40 2nqb_D Histone H2B; nucleosome 98.1 7.8E-06 2.7E-10 66.2 7.5 63 64-127 37-99 (123)
41 1tzy_B Histone H2B; histone-fo 98.1 1E-05 3.5E-10 65.7 7.5 63 64-127 40-102 (126)
42 2jss_A Chimera of histone H2B. 97.8 6.4E-05 2.2E-09 63.9 7.7 63 64-127 7-69 (192)
43 4dra_E Centromere protein X; D 97.7 0.00016 5.6E-09 54.9 8.6 71 56-126 8-79 (84)
44 1h3o_B Transcription initiatio 97.7 0.00018 6.2E-09 53.7 8.3 66 60-126 5-70 (76)
45 3b0b_C CENP-X, centromere prot 97.7 0.00021 7.2E-09 53.8 8.4 71 56-126 4-75 (81)
46 1bh9_B TAFII28; histone fold, 97.4 0.00048 1.6E-08 52.6 7.7 67 60-128 16-83 (89)
47 2ly8_A Budding yeast chaperone 96.1 0.0059 2E-07 49.1 4.6 58 60-117 1-67 (121)
48 3v9r_B MHF2, uncharacterized p 96.1 0.011 3.6E-07 45.5 5.6 48 60-107 1-49 (88)
49 3uk6_A RUVB-like 2; hexameric 89.9 0.59 2E-05 40.2 6.3 66 61-126 259-329 (368)
50 1fnn_A CDC6P, cell division co 82.7 5.2 0.00018 34.0 8.3 77 61-137 193-284 (389)
51 3ksy_A SOS-1, SON of sevenless 82.3 3.3 0.00011 42.5 8.1 67 57-125 101-167 (1049)
52 2v1u_A Cell division control p 78.9 2.1 7E-05 36.3 4.4 68 61-128 201-277 (387)
53 2c9o_A RUVB-like 1; hexameric 78.4 2.6 8.8E-05 38.5 5.2 67 60-126 365-436 (456)
54 3kw6_A 26S protease regulatory 74.6 2.8 9.4E-05 29.3 3.4 43 85-127 27-73 (78)
55 2qby_A CDC6 homolog 1, cell di 72.8 5.2 0.00018 33.7 5.3 70 61-130 197-275 (386)
56 1k6k_A ATP-dependent CLP prote 70.0 10 0.00034 28.6 5.9 34 80-125 2-35 (143)
57 1r4v_A Hypothetical protein AQ 69.7 6.8 0.00023 33.1 5.2 85 50-146 14-100 (171)
58 3k1j_A LON protease, ATP-depen 67.4 20 0.00068 34.0 8.6 49 78-126 313-374 (604)
59 2dzn_B 26S protease regulatory 66.5 5.7 0.0002 28.1 3.6 28 101-128 42-69 (82)
60 1wwi_A Hypothetical protein TT 66.5 13 0.00045 30.7 6.2 58 61-120 3-60 (148)
61 2r44_A Uncharacterized protein 65.6 24 0.00083 29.8 8.1 51 77-127 224-297 (331)
62 3vlf_B 26S protease regulatory 64.4 5.8 0.0002 28.6 3.4 34 96-129 40-73 (88)
63 1g8p_A Magnesium-chelatase 38 63.8 27 0.00091 29.3 7.9 51 77-127 265-322 (350)
64 2krk_A 26S protease regulatory 63.5 6.2 0.00021 28.6 3.4 32 96-127 50-81 (86)
65 1khy_A CLPB protein; alpha hel 63.4 16 0.00055 27.5 5.9 38 79-128 5-42 (148)
66 3aji_B S6C, proteasome (prosom 61.7 5.7 0.0002 27.8 2.9 33 96-128 40-72 (83)
67 2y1q_A CLPC N-domain, negative 58.6 13 0.00044 28.2 4.6 38 79-128 5-42 (150)
68 3fh2_A Probable ATP-dependent 58.6 11 0.00039 28.8 4.3 37 79-127 6-42 (146)
69 2qby_B CDC6 homolog 3, cell di 56.7 12 0.00042 31.8 4.6 66 61-128 197-271 (384)
70 3fes_A ATP-dependent CLP endop 55.6 12 0.00042 28.7 4.0 38 79-128 7-44 (145)
71 2chg_A Replication factor C sm 54.0 17 0.00057 27.5 4.5 63 61-125 161-224 (226)
72 1in4_A RUVB, holliday junction 49.2 43 0.0015 28.9 6.9 69 63-131 182-254 (334)
73 3bos_A Putative DNA replicatio 47.7 37 0.0013 26.3 5.7 61 63-125 176-241 (242)
74 3h4m_A Proteasome-activating n 47.4 23 0.00077 29.1 4.7 33 95-127 226-258 (285)
75 1njg_A DNA polymerase III subu 43.8 29 0.00099 26.4 4.5 64 61-125 185-249 (250)
76 3fes_A ATP-dependent CLP endop 43.4 31 0.0011 26.4 4.6 40 77-128 79-118 (145)
77 5pal_A Parvalbumin; calcium-bi 43.1 78 0.0027 21.7 6.5 70 61-141 6-87 (109)
78 3pvs_A Replication-associated 39.8 43 0.0015 30.8 5.7 67 61-128 165-245 (447)
79 1k6k_A ATP-dependent CLP prote 39.7 69 0.0024 23.8 6.0 38 78-127 78-115 (143)
80 3zri_A CLPB protein, CLPV; cha 39.6 25 0.00085 28.5 3.7 38 79-128 24-61 (171)
81 2i7a_A Calpain 13; calcium-dep 38.7 1.4E+02 0.0047 23.2 10.0 29 101-130 79-111 (174)
82 3fh2_A Probable ATP-dependent 38.1 68 0.0023 24.3 5.8 39 78-128 80-118 (146)
83 3nzz_A Cell invasion protein S 37.4 7.6 0.00026 35.5 0.2 85 35-126 21-105 (308)
84 3pm8_A PFCDPK2, calcium-depend 37.3 65 0.0022 25.1 5.7 79 61-141 22-100 (197)
85 2kru_A Light-independent proto 36.6 25 0.00087 25.0 2.8 51 77-128 3-54 (63)
86 3vfd_A Spastin; ATPase, microt 36.0 1.4E+02 0.0049 26.0 8.3 70 61-130 282-368 (389)
87 1lv7_A FTSH; alpha/beta domain 35.9 30 0.001 28.1 3.6 33 96-128 221-253 (257)
88 3fwb_A Cell division control p 35.5 1.2E+02 0.0041 21.6 8.8 39 102-140 100-138 (161)
89 1w5s_A Origin recognition comp 33.8 1.3E+02 0.0045 25.5 7.5 68 61-128 215-294 (412)
90 4b4t_K 26S protease regulatory 33.0 24 0.00083 32.8 2.9 31 96-126 383-413 (428)
91 2f3n_A SH3 and multiple ankyri 32.8 23 0.00079 24.8 2.1 23 115-137 5-27 (76)
92 3mse_B Calcium-dependent prote 32.7 1.6E+02 0.0054 22.2 8.0 29 102-130 43-71 (180)
93 3b9p_A CG5977-PA, isoform A; A 32.6 1.3E+02 0.0046 24.6 7.2 60 78-137 207-282 (297)
94 4b4t_I 26S protease regulatory 32.5 32 0.0011 32.5 3.7 68 58-126 349-422 (437)
95 1wlz_A DJBP, CAP-binding prote 31.9 94 0.0032 21.2 5.3 29 102-130 28-56 (105)
96 4b4t_J 26S protease regulatory 31.5 34 0.0012 31.8 3.6 32 95-126 357-388 (405)
97 4b4t_H 26S protease regulatory 31.4 32 0.0011 32.8 3.4 32 96-127 419-450 (467)
98 4b4t_L 26S protease subunit RP 30.7 36 0.0012 31.8 3.6 31 96-126 391-421 (437)
99 4b4t_M 26S protease regulatory 30.7 35 0.0012 31.8 3.6 33 95-127 390-422 (434)
100 1ofh_A ATP-dependent HSL prote 29.8 84 0.0029 25.5 5.4 52 78-129 233-301 (310)
101 3bq7_A Diacylglycerol kinase d 29.5 28 0.00096 24.7 2.1 24 114-137 9-32 (81)
102 3pfi_A Holliday junction ATP-d 29.5 1E+02 0.0034 25.9 6.0 70 61-130 184-257 (338)
103 2zbk_B Type 2 DNA topoisomeras 29.2 32 0.0011 32.9 3.1 57 71-127 427-485 (530)
104 1tiz_A Calmodulin-related prot 29.0 87 0.003 19.1 4.3 37 103-139 6-42 (67)
105 1hqc_A RUVB; extended AAA-ATPa 28.9 58 0.002 27.0 4.3 70 61-130 168-241 (324)
106 2l09_A ASR4154 protein; proto- 28.5 31 0.0011 24.5 2.2 49 78-127 3-52 (62)
107 2y1q_A CLPC N-domain, negative 28.1 71 0.0024 24.0 4.3 38 78-127 78-115 (150)
108 2d8c_A Phosphatidylcholine:cer 27.8 23 0.00078 26.6 1.4 23 114-136 19-41 (97)
109 2qz4_A Paraplegin; AAA+, SPG7, 27.7 24 0.00083 28.3 1.7 33 95-127 217-249 (262)
110 1sxj_D Activator 1 41 kDa subu 27.6 47 0.0016 27.7 3.6 67 61-128 192-264 (353)
111 3d8b_A Fidgetin-like protein 1 27.6 1.1E+02 0.0037 26.6 6.0 64 65-128 255-335 (357)
112 3fs7_A Parvalbumin, thymic; ca 26.6 1.5E+02 0.0053 20.1 7.9 80 60-141 6-88 (109)
113 1uxc_A FRUR (1-57), fructose r 25.8 94 0.0032 21.2 4.3 35 60-95 11-45 (65)
114 3zri_A CLPB protein, CLPV; cha 25.1 82 0.0028 25.3 4.5 39 77-127 96-135 (171)
115 2lmt_A Calmodulin-related prot 24.9 1.8E+02 0.0062 21.1 6.0 41 101-141 86-126 (148)
116 3pxg_A Negative regulator of g 24.7 98 0.0033 28.2 5.4 39 79-129 5-43 (468)
117 1pva_A Parvalbumin; calcium bi 24.6 1.6E+02 0.0054 20.0 5.4 27 102-128 46-72 (110)
118 1ixz_A ATP-dependent metallopr 24.2 56 0.0019 26.4 3.3 58 67-125 192-254 (254)
119 4ds7_A Calmodulin, CAM; protei 24.1 1.8E+02 0.0063 20.2 9.7 42 102-143 88-129 (147)
120 1avs_A Troponin C; muscle cont 23.5 75 0.0026 21.2 3.4 37 103-139 25-61 (90)
121 2kz2_A Calmodulin, CAM; TR2C, 23.4 1.2E+02 0.004 20.9 4.5 37 103-139 34-70 (94)
122 3f8t_A Predicted ATPase involv 23.3 2.2E+02 0.0077 27.4 7.7 67 59-125 392-481 (506)
123 1alv_A Calpain, S-camld; calci 23.2 2.1E+02 0.0073 21.0 6.2 74 60-138 43-117 (173)
124 2ovk_C Myosin catalytic light 22.8 1.5E+02 0.005 21.4 5.1 40 102-141 89-128 (159)
125 3h4s_E KCBP interacting Ca2+-b 22.7 1.1E+02 0.0039 22.3 4.5 28 102-129 44-71 (135)
126 1jr3_A DNA polymerase III subu 22.7 66 0.0022 27.1 3.5 67 61-128 178-245 (373)
127 1kw4_A Polyhomeotic; SAM domai 22.6 44 0.0015 24.5 2.1 24 114-137 16-40 (89)
128 1bu3_A Calcium-binding protein 22.5 1.9E+02 0.0064 19.7 7.9 80 60-141 6-88 (109)
129 3bow_A Calpain-2 catalytic sub 22.2 3.5E+02 0.012 26.2 9.0 81 58-138 545-645 (714)
130 1bh9_A TAFII18; histone fold, 21.9 1.7E+02 0.0059 19.1 5.9 39 66-105 6-44 (45)
131 2gle_A Neurabin-1; SAM domain, 21.8 32 0.0011 23.7 1.2 22 115-136 7-28 (74)
132 1iy2_A ATP-dependent metallopr 21.6 65 0.0022 26.6 3.2 59 66-125 215-278 (278)
133 4dfk_A DNA polymerase I, therm 21.5 2.9E+02 0.01 26.3 8.1 90 58-152 140-252 (540)
134 3i5g_B Myosin regulatory light 21.2 2E+02 0.0068 21.6 5.8 54 75-140 5-58 (153)
135 2jrf_A Tubulin polymerization- 21.2 90 0.0031 26.3 4.0 54 59-127 28-82 (184)
136 3omb_A Extracellular solute-bi 21.0 77 0.0026 28.6 3.8 70 73-144 461-534 (535)
137 3f9v_A Minichromosome maintena 20.9 32 0.0011 32.9 1.3 49 79-127 521-587 (595)
138 2ktg_A Calmodulin, putative; e 20.7 1.2E+02 0.0041 19.7 3.9 38 103-140 19-56 (85)
139 3sg6_A Gcamp2, myosin light ch 20.6 3.7E+02 0.013 25.0 8.5 41 102-142 389-429 (450)
140 1jr3_D DNA polymerase III, del 20.4 1.2E+02 0.0039 25.8 4.6 66 61-126 142-208 (343)
141 2lv7_A Calcium-binding protein 20.4 78 0.0027 22.7 3.1 52 78-141 28-79 (100)
142 2joj_A Centrin protein; N-term 20.0 1.2E+02 0.004 19.2 3.7 27 104-130 13-39 (77)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=5.1e-30 Score=218.63 Aligned_cols=101 Identities=31% Similarity=0.616 Sum_probs=93.5
Q ss_pred CCCCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCc
Q 038325 52 CVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDN 131 (231)
Q Consensus 52 ~~v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~d 131 (231)
....++|+.||+|+|.||||++|| +++||+||+++|++||++||+||+++|+++|.+++||||+++||++||++|||++
T Consensus 7 ~~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~ 85 (179)
T 1jfi_B 7 SSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGS 85 (179)
T ss_dssp -----CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGG
T ss_pred CCCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHH
Confidence 346689999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhhh
Q 038325 132 YVEPLSIFLNRFRDSEHERTAA 153 (231)
Q Consensus 132 Yv~~Lk~~L~~yRe~~~~rk~~ 153 (231)
|+++|+.+|++||++++.|+..
T Consensus 86 fv~~lk~~L~~yre~~~~kkr~ 107 (179)
T 1jfi_B 86 YISEVKEVLQECKTVALKRRKA 107 (179)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999887663
No 2
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=5.2e-29 Score=190.15 Aligned_cols=92 Identities=64% Similarity=1.109 Sum_probs=86.0
Q ss_pred CCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcch
Q 038325 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYV 133 (231)
Q Consensus 54 v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv 133 (231)
++++|+.||+++|.||||+.+|++.+||+||+++|++|+++||.+|+++|++.|++++||||+++||++||++|||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 038325 134 EPLSIFLNRFRD 145 (231)
Q Consensus 134 ~~Lk~~L~~yRe 145 (231)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 3
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.96 E-value=6.2e-29 Score=201.30 Aligned_cols=100 Identities=27% Similarity=0.495 Sum_probs=88.3
Q ss_pred CCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcch
Q 038325 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYV 133 (231)
Q Consensus 54 v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv 133 (231)
-+++++.||+|+|.||||+++|++.+||+||+.+|++||++||+||+++|+++|.+++||||+++||++||+.+||.+|+
T Consensus 3 e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 3 ERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp --------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred CccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 038325 134 EPLSIFLNRFRDSEHERTAA 153 (231)
Q Consensus 134 ~~Lk~~L~~yRe~~~~rk~~ 153 (231)
++|+.+|+.||++++.|+..
T Consensus 83 ~~lk~~l~~yr~~~~~kk~~ 102 (128)
T 2byk_B 83 PSLTQDLEVYRKVVKEKKES 102 (128)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999988875
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.85 E-value=1.3e-21 Score=144.84 Aligned_cols=68 Identities=16% Similarity=0.300 Sum_probs=64.9
Q ss_pred cCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 59 QYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 59 ~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
..||+|+|.||||+++| +++||+||+++|++|+++||++|+++|++.|.+++||||+++||++||+.+
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 57999999999999998 799999999999999999999999999999999999999999999998864
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.83 E-value=7.8e-21 Score=158.64 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=71.5
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchH
Q 038325 60 YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVE 134 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~ 134 (231)
.||+++|.||||++||. .|||+||+++|++|+++|+.+|+++|++.|+++|||||+++||++||..|||++|++
T Consensus 4 ~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred cCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 69999999999999986 999999999999999999999999999999999999999999999999999998754
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.79 E-value=2.3e-19 Score=142.08 Aligned_cols=93 Identities=19% Similarity=0.345 Sum_probs=81.3
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHH
Q 038325 56 EQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEP 135 (231)
Q Consensus 56 e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~ 135 (231)
.+|..||+++|.||||... ..+||+|+.++|++|+++|+..|+.+|...|+++|||||+++||+.||+++|+..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~g--~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHYV--KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHHH--CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 3578899999999999994 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 038325 136 LSIFLNRFRDSEHER 150 (231)
Q Consensus 136 Lk~~L~~yRe~~~~r 150 (231)
++.++++|...+-.+
T Consensus 81 l~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 81 LHVLVERHLPLEYRK 95 (111)
T ss_dssp HHHHHHHHSCHHHHH
T ss_pred HHHHHHHhCcHHHHH
Confidence 999999995544444
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.77 E-value=6.3e-19 Score=126.90 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=64.0
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 60 YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
.||+++|.||||+. ++.+||+||+++|++|+++||.+|+.+|++.|.+++||||+++||..|+++|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 5899999999999999999999999999999999999999999999999987
No 8
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.70 E-value=2.2e-17 Score=129.01 Aligned_cols=85 Identities=22% Similarity=0.281 Sum_probs=72.3
Q ss_pred CCCCCCCCCCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 46 PPAGAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 46 ~~~~~~~~v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
.+..|...++..+..||+++|.|||+... ..+||+|+.++|++|+++||..|+.+|.++|++++||||+++||.+||+
T Consensus 14 g~kr~~k~~r~~i~~ip~~~I~Rlar~~G--v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALk 91 (102)
T 1id3_B 14 GAKRHRKILRDNIQGITKPAIRRLARRGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 91 (102)
T ss_dssp ----------CCGGGSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchHHHHHHhccCCCCHHHHHHHHHHcC--chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 44677888899999999999999999986 4789999999999999999999999999999999999999999999999
Q ss_pred hcCCCcc
Q 038325 126 KLGFDNY 132 (231)
Q Consensus 126 ~LGF~dY 132 (231)
.+||.-|
T Consensus 92 r~g~~lY 98 (102)
T 1id3_B 92 RQGRTLY 98 (102)
T ss_dssp HTTCCEE
T ss_pred HcCCCCC
Confidence 9999866
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.70 E-value=3.6e-17 Score=136.53 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCCCCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 51 PCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 51 ~~~v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
+.++..+++.||+++|.||||+. ...|||+||+++|++|+++|+.+|+++|.++|++++||||+++||++||+..
T Consensus 73 ~~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 73 EGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 55677889999999999999999 4789999999999999999999999999999999999999999999999863
No 10
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.69 E-value=4e-18 Score=140.05 Aligned_cols=97 Identities=16% Similarity=0.310 Sum_probs=63.2
Q ss_pred ccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCcccHHHHHhh---cCCCc
Q 038325 56 EQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERC-HREQRKTITAEDVVWAMGK---LGFDN 131 (231)
Q Consensus 56 e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c-~~~kRKTItaeDVL~ALe~---LGF~d 131 (231)
..++.||+++|.||||.. |+..+||++|..+|++|++.||.+|+.+|+..| +..+||||+++||.+|+.. ++|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 456789999999999998 788899999999999999999999999999999 9999999999999999984 56666
Q ss_pred chHHHHHHHHHHHHHHHHHhhh
Q 038325 132 YVEPLSIFLNRFRDSEHERTAA 153 (231)
Q Consensus 132 Yv~~Lk~~L~~yRe~~~~rk~~ 153 (231)
++.|.+.+|..|+++.+.++..
T Consensus 94 divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp TTSCSCC---------------
T ss_pred ccccchhhHHHHHHHHHhcccc
Confidence 6669999999999988876664
No 11
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.68 E-value=4.7e-17 Score=122.65 Aligned_cols=78 Identities=27% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcc
Q 038325 53 VVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNY 132 (231)
Q Consensus 53 ~v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dY 132 (231)
..+.....||+++|.||+|... ..+||+|+.++|++|+++|+..|+.+|.+.|++++||||+++||.+||+.+||+-|
T Consensus 3 ~~r~~~~~ip~~~I~Riar~~G--v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 3 VLRDNIQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp CGGGGCCSSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccccCCCCCHHHHHHHHHHcC--chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 4567788899999999999997 47899999999999999999999999999999999999999999999999998766
No 12
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.66 E-value=2.5e-17 Score=131.47 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=80.1
Q ss_pred ccccccccCCCCCCCC---CCCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 038325 37 QQLPLQSLLPPAGAPC---VVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRK 113 (231)
Q Consensus 37 ~~~~~q~~~~~~~~~~---~v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRK 113 (231)
.++.++.||..+..+. ........||+++|.||||.. |+..+||+||..+|++|++.||.+|+.+|++.|+.++||
T Consensus 15 ~~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krk 93 (119)
T 4g92_C 15 ARDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRR 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3455666777665432 223446679999999999976 888999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHhhcCCCcch
Q 038325 114 TITAEDVVWAMGKLGFDNYV 133 (231)
Q Consensus 114 TItaeDVL~ALe~LGF~dYv 133 (231)
||+++||..|++..+.-+|.
T Consensus 94 tI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 94 TLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp EECHHHHHHHHTTCGGGGGG
T ss_pred ccCHHHHHHHHhcCchhhHH
Confidence 99999999999876654553
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.63 E-value=5.6e-16 Score=120.67 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=75.1
Q ss_pred CCCCCCCCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 48 AGAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 48 ~~~~~~v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
..+....++.+..||+++|.||+|.... .+||+|+.++|++|+++|+..|+.+|...|++++||||+++||.+||+.+
T Consensus 17 kr~~k~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 17 KRHRKVLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp ----CCCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred cccccchhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3567778888999999999999999974 69999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 038325 128 GFDNY 132 (231)
Q Consensus 128 GF~dY 132 (231)
||+.|
T Consensus 95 g~~lY 99 (103)
T 1tzy_D 95 GRTLY 99 (103)
T ss_dssp TCEEE
T ss_pred CCCCc
Confidence 98765
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.61 E-value=9.5e-16 Score=119.50 Aligned_cols=83 Identities=24% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCCCCCCCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 48 AGAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 48 ~~~~~~v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
..+....++.+..||+++|.||+|.... .+||.|+.++|++|+++|+..|+.+|...|++++||||+++||.+||+.+
T Consensus 17 kr~~~~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 17 KRHRKILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp -------------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cchhhhhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3566777888889999999999999974 69999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 038325 128 GFDNY 132 (231)
Q Consensus 128 GF~dY 132 (231)
||+.|
T Consensus 95 g~~lY 99 (103)
T 2yfw_B 95 GRTLY 99 (103)
T ss_dssp C----
T ss_pred CCCCc
Confidence 98766
No 15
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.60 E-value=1.3e-15 Score=117.32 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=69.4
Q ss_pred CCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcch
Q 038325 54 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYV 133 (231)
Q Consensus 54 v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv 133 (231)
....+..||.+.|.||||.. |+..+||+||..+|++|++.||.+|+.+|++.|++++||||+++||..|++..++.+|.
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 34567789999999999998 66789999999999999999999999999999999999999999999999998888876
Q ss_pred H
Q 038325 134 E 134 (231)
Q Consensus 134 ~ 134 (231)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 4
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.58 E-value=4.1e-15 Score=107.90 Aligned_cols=64 Identities=31% Similarity=0.434 Sum_probs=61.6
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 60 YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
.||+++|.||+|+.. ..+||+++.++|++|+++|+..|+.+|+..|+++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~g--~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG--AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHTT--CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHcC--cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 699999999999974 7899999999999999999999999999999999999999999999986
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.28 E-value=3.7e-12 Score=98.41 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=59.8
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchH
Q 038325 57 QDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVE 134 (231)
Q Consensus 57 ~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~ 134 (231)
-...||.+.|.||||.. |+..+||.||...|.++++.|+.+|+..|...|++.+||||+++||..|++.-+..+|..
T Consensus 8 ~~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp --CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred cCCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 34679999999999974 566799999999999999999999999999999999999999999999998766666654
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.11 E-value=1.6e-10 Score=86.79 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=65.0
Q ss_pred ccCCchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 58 DQYMPIANVIRIMRRILP---PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 58 d~~LPkA~I~RImK~aLP---~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
++.||++.+.||+|+... .+.|++.+|..+||++++.|+.-|...|+..|.+.||+||.++||.-|+.--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 478999999999999943 47899999999999999999999999999999999999999999999987654
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.07 E-value=2.1e-10 Score=89.75 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCCCCCCccccCCchhHHHHHHHhhCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHH
Q 038325 49 GAPCVVREQDQYMPIANVIRIMRRILPP------HAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVW 122 (231)
Q Consensus 49 ~~~~~v~e~d~~LPkA~I~RImK~aLP~------~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ 122 (231)
+-...++..++.||++.+.||+|+...+ +.+++.+|..+||++++.|+.-|...|+..|.+.||+||.+.||.-
T Consensus 16 EIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqL 95 (100)
T 2yfv_A 16 EIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQL 95 (100)
T ss_dssp ------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHH
Confidence 3466788999999999999999999843 6899999999999999999999999999999999999999999998
Q ss_pred HHh
Q 038325 123 AMG 125 (231)
Q Consensus 123 ALe 125 (231)
|+.
T Consensus 96 a~r 98 (100)
T 2yfv_A 96 ARR 98 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 20
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.00 E-value=4.5e-10 Score=92.66 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=66.7
Q ss_pred CCCCCccccCCchhHHHHHHHhhCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 51 PCVVREQDQYMPIANVIRIMRRILP-----PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 51 ~~~v~e~d~~LPkA~I~RImK~aLP-----~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
...++..+++||++.+.||||++.. .+.+++.+|.++||++++.|+.-|...|+..|.+.||+||.++||.-|+.
T Consensus 52 R~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 52 RKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 5567899999999999999999973 26899999999999999999999999999999999999999999999987
Q ss_pred hcCC
Q 038325 126 KLGF 129 (231)
Q Consensus 126 ~LGF 129 (231)
--|.
T Consensus 132 irg~ 135 (140)
T 3nqu_A 132 IRGL 135 (140)
T ss_dssp HHC-
T ss_pred hccc
Confidence 6554
No 21
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.00 E-value=4.7e-10 Score=94.01 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCCCCccccCCchhHHHHHHHhhCCC-----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 51 PCVVREQDQYMPIANVIRIMRRILPP-----HAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 51 ~~~v~e~d~~LPkA~I~RImK~aLP~-----~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
...++..+++||++.+.||||++..+ +.+++.+|+++||++++.|+.-|...|+..|.+.||+||.++||..|+.
T Consensus 68 R~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 68 RKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp -------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred HHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 45667999999999999999999742 6799999999999999999999999999999999999999999999876
Q ss_pred hc
Q 038325 126 KL 127 (231)
Q Consensus 126 ~L 127 (231)
--
T Consensus 148 Ir 149 (156)
T 3r45_A 148 IR 149 (156)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 22
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.99 E-value=8.1e-10 Score=83.81 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=64.4
Q ss_pred cCCchhHHHHHHHhhCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 59 QYMPIANVIRIMRRILP-----PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 59 ~~LPkA~I~RImK~aLP-----~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
+.||++.+.||+|+... .+.|++.+|..+||++++.|+.-|...|+..|.+.||+||.++||.-|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 57999999999999973 36899999999999999999999999999999999999999999999876544
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.96 E-value=8.7e-10 Score=90.50 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=69.7
Q ss_pred CCCccccCCchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 53 VVREQDQYMPIANVIRIMRRILP---PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 53 ~v~e~d~~LPkA~I~RImK~aLP---~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
.++..+++||++.+.||||+... .+.+++.+|.++||++++.|+.-|...|+..|.+.+|+||.++||.-|+.--|
T Consensus 55 yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 55 YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred hhcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 45688999999999999999943 47899999999999999999999999999999999999999999999987554
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.78 E-value=2.3e-08 Score=73.75 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=61.5
Q ss_pred cCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 59 QYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 59 ~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
-.||+++|.+|++... -.+||+|+..+|.+-++..+..|+.+|.+.+++.|||||+.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~G--i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG--VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3699999999999997 4589999999999999999999999999999999999999999999986
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.68 E-value=5.1e-08 Score=77.90 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=67.1
Q ss_pred HHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 038325 65 NVIRIMRRILPP-HAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRF 143 (231)
Q Consensus 65 ~I~RImK~aLP~-~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L~~y 143 (231)
.|.||+++...+ ++.||+++..+|.+.+..|+.-|+..+...|+++|||||+++||.-++++. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 578999998743 577999999999999999999999999999999999999999999999984 5667777776
Q ss_pred HHHH
Q 038325 144 RDSE 147 (231)
Q Consensus 144 Re~~ 147 (231)
.+..
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 26
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.62 E-value=1.3e-07 Score=74.83 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=64.9
Q ss_pred HHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 038325 65 NVIRIMRRILP-PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRF 143 (231)
Q Consensus 65 ~I~RImK~aLP-~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L~~y 143 (231)
.|.||+++..- .+.+||+++..+|.+.+..|+.-|+.+|...|++.|||||+.+||.-|+++. +.|...|..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 48899998863 2479999999999999999999999999999999999999999999999984 4555555555
Q ss_pred HHH
Q 038325 144 RDS 146 (231)
Q Consensus 144 Re~ 146 (231)
.+.
T Consensus 98 ~~e 100 (107)
T 3b0b_B 98 SDE 100 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 27
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.1e-07 Score=73.03 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=59.0
Q ss_pred HHHHHHHhhCCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 65 NVIRIMRRILPPH-AKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 65 ~I~RImK~aLP~~-~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
.|.+|+.+.++.. +.||+++..+|.+.+..|+.-|+..+...|+++|||||+++||.-++++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5789999998765 88999999999999999999999999999999999999999999998873
No 28
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.59 E-value=1.3e-07 Score=78.04 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=67.1
Q ss_pred HHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 038325 65 NVIRIMRRILPP-HAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRF 143 (231)
Q Consensus 65 ~I~RImK~aLP~-~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L~~y 143 (231)
.|.||+++...+ ++.||+++..+|.+.+..|+.-|+..+...|++.|||||+++||.-++++. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 577899887543 688999999999999999999999999999999999999999999999984 4566666666
Q ss_pred HHHHH
Q 038325 144 RDSEH 148 (231)
Q Consensus 144 Re~~~ 148 (231)
.+...
T Consensus 98 ~~el~ 102 (140)
T 3vh5_A 98 SDELA 102 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 29
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=9.3e-08 Score=77.14 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcc
Q 038325 79 KISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNY 132 (231)
Q Consensus 79 rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dY 132 (231)
|||.|+.+.+.+..++|+.-|..+|..+|++.+||||+++||..||++.|-.-|
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 566666666666666677777788999999999999999999999999886543
No 30
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.46 E-value=5.5e-07 Score=65.97 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=56.8
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 64 ANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 64 A~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
-.|.||+|+.. --+++.++...|.+.+..|+.-|..+|..+|++.|||||+++||.-|++.
T Consensus 5 ~~i~~iLk~~G--~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN--VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT--CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 36889999986 45999999999999999999999999999999999999999999999874
No 31
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.38 E-value=1.1e-06 Score=70.75 Aligned_cols=69 Identities=10% Similarity=0.166 Sum_probs=63.3
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 57 QDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 57 ~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
-.+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 3678999999999999842 34999999999999999999999999999999999999999999999874
No 32
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=2e-07 Score=82.52 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=56.0
Q ss_pred HHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 66 VIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 66 I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
+.||+|++. ..|||.++.+.+.+..++|+.-|..+|..+|++++||||+++||..||+++|
T Consensus 167 ~~RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 167 DEEDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CCTTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHHHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 347777775 5789999999999999999999999999999999999999999999999865
No 33
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.35 E-value=1.2e-06 Score=71.00 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=63.8
Q ss_pred ccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 58 DQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 58 d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
.+.||.+.|.|+||+......||+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 678999999999999874345999999999999999999999999999999999999999999999874
No 34
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.34 E-value=1.4e-06 Score=70.56 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=63.3
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 57 QDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 57 ~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
-.+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 3678999999999999742 34999999999999999999999999999999999999999999999874
No 35
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.32 E-value=1.3e-06 Score=70.95 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=63.2
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 57 QDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 57 ~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
-.+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3678999999999999742 34999999999999999999999999999999999999999999999874
No 36
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.32 E-value=1.8e-06 Score=69.19 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=63.6
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 57 QDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 57 ~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
-.+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3678999999999999853 45999999999999999999999999999999999999999999999874
No 37
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.26 E-value=2.5e-06 Score=70.92 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=63.3
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 57 QDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 57 ~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
-.+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|+..|...|...|+..+|++|+++||..|++.
T Consensus 41 agLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 3678999999999999842 35999999999999999999999999999999999999999999999874
No 38
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.10 E-value=6.6e-06 Score=70.02 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=63.3
Q ss_pred ccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 58 DQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 58 d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
.+.||.+.|.|+||+.-....||+.+|...|..+.+.++..|...|...|++.+|++|+++||..|+..
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 678999999999999842236999999999999999999999999999999999999999999999873
No 39
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=4.9e-06 Score=73.62 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=64.4
Q ss_pred cccCCchhHHHHHHHhhCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 57 QDQYMPIANVIRIMRRILPP------HAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 57 ~d~~LPkA~I~RImK~aLP~------~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
..+.+|+..+.||+|+...+ +.++..+|..+||++++.|+.-|...++..|.+.||.||.+.|+.-|..--|
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 35789999999999998753 6899999999999999999999999999999999999999999999987655
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.10 E-value=7.8e-06 Score=66.20 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=59.2
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 64 ANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 64 A~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
.-|+|++|++-| +..||.+|...|...+..+..-|+.||...|...+|+||+.+||..|++.|
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 568999999987 688999999999999999999999999999999999999999999998765
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.06 E-value=1e-05 Score=65.75 Aligned_cols=63 Identities=27% Similarity=0.420 Sum_probs=59.2
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 64 ANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 64 A~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
.-|+|++|++-| +..||.+|...|...+..+..-|+.||...|...+|+||+.+||..|++.|
T Consensus 40 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 40 IYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 469999999987 588999999999999999999999999999999999999999999998765
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.76 E-value=6.4e-05 Score=63.91 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=59.0
Q ss_pred hHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 64 ANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 64 A~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
.-|+|++|++-| +..||+||...|...+..++.-|+.+|...+...+|+|||.+||..|++.+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 458999999987 688999999999999999999999999999999999999999999998854
No 43
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.72 E-value=0.00016 Score=54.94 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=62.1
Q ss_pred ccccCCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 56 EQDQYMPIANVIRIMRRILP-PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 56 e~d~~LPkA~I~RImK~aLP-~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
..+..+|...|.||++...- +..||++||..++++....|+......|.+.++.++..+|..+|+-+.+-.
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 34667999999999998886 578999999999999999999999999999999888999999999887654
No 44
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.69 E-value=0.00018 Score=53.68 Aligned_cols=66 Identities=14% Similarity=0.335 Sum_probs=62.5
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 60 YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
-|++..+..||++.-| ...+..|+.++|.+.|.+||.-++..|...|++.+-.||...||...|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4799999999999976 78999999999999999999999999999999999999999999999885
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.66 E-value=0.00021 Score=53.83 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=62.0
Q ss_pred ccccCCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 56 EQDQYMPIANVIRIMRRILP-PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 56 e~d~~LPkA~I~RImK~aLP-~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
+.+-.+|...|.||++.... +..||++||..++.+....||.....-|...++.++-..|..+|+-+.+-.
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 44667999999999999987 468999999999999999999999999999998889999999999887654
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.43 E-value=0.00048 Score=52.59 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=60.9
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCcccHHHHHhhcC
Q 038325 60 YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQR-KTITAEDVVWAMGKLG 128 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kR-KTItaeDVL~ALe~LG 128 (231)
.||++.|.|||...+ +..|+.+...+|.-.+.+||-.|..+|.+++.+.+. .-|.+.||-.|..+|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 599999999999998 679999999999999999999999999999987754 4899999999988764
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0059 Score=49.09 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=48.3
Q ss_pred CCchhHHHHHHHhhCC---C---CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccCc
Q 038325 60 YMPIANVIRIMRRILP---P---HAKISDDAKETVQECVSEYISFITGEANERCHREQR---KTITA 117 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP---~---~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kR---KTIta 117 (231)
++|+....||+|+... . +.|++.+|..+||++++.|+.-|...+|-.|.+..| |-|+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~ 67 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISG 67 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSS
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhH
Confidence 4788899999987642 2 689999999999999999999999999999888744 44554
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.011 Score=45.48 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=39.3
Q ss_pred CCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038325 60 YMPIANVIRIMRRILP-PHAKISDDAKETVQECVSEYISFITGEANERC 107 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP-~~~rISkDAkeaIqecaseFI~~LTseAne~c 107 (231)
.||+..|.||++.... ++.||++||..++++...+||..-...|.+..
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~k 49 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSH 49 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999997775 46899999999999999999976555555433
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.91 E-value=0.59 Score=40.19 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=51.3
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 61 MPIANVIRIMRRILP-PHAKISDDAKETVQECVS----EYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 61 LPkA~I~RImK~aLP-~~~rISkDAkeaIqecas----eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
++...+..|++..+. ....++.++.+.|.+.+. ..+.-+...|...|...++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 456677777775553 246799999999988776 355556667778888889999999999999986
No 50
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.69 E-value=5.2 Score=34.04 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=55.8
Q ss_pred CchhHHHHHHHhhCCC---CcccCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 61 MPIANVIRIMRRILPP---HAKISDDAKETVQECV------------SEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 61 LPkA~I~RImK~aLP~---~~rISkDAkeaIqeca------------seFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
|....+..+++..+.. ...++.++.+.|.+.+ --++..+...|...|..+++.+|+.+||..+++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3446667777665532 3468999999888887 234566667788888888999999999999999
Q ss_pred hcCCCcchHHHH
Q 038325 126 KLGFDNYVEPLS 137 (231)
Q Consensus 126 ~LGF~dYv~~Lk 137 (231)
.+....+...++
T Consensus 273 ~~~~~~~~~~l~ 284 (389)
T 1fnn_A 273 EVLFGISEEVLI 284 (389)
T ss_dssp HHSCCCCHHHHH
T ss_pred HHhhhhHHHHHH
Confidence 887665544443
No 51
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=82.34 E-value=3.3 Score=42.51 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=52.2
Q ss_pred cccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 57 QDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 57 ~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
..+.+|...|.|++|... .-||+..|..-|....+-....|...|-..|+..+++.|+++||..|+.
T Consensus 101 ~~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CCccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 357899999999997666 4599988887776655544455555566777888999999999999885
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=78.89 E-value=2.1 Score=36.33 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=52.1
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 61 MPIANVIRIMRRILP---PHAKISDDAKETVQECVS------EYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 61 LPkA~I~RImK~aLP---~~~rISkDAkeaIqecas------eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
+....+..|++..+. ....++.++.+.+.+.+. ..+.-+...|...|..+++.+|+.+||..|++.+.
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 336667777766542 246799999998888776 45566667788888888999999999999998773
No 53
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.44 E-value=2.6 Score=38.51 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=50.5
Q ss_pred CCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 60 YMPIANVIRIMRRILP-PHAKISDDAKETVQECV-S---EYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP-~~~rISkDAkeaIqeca-s---eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
.+....+..+++..+. ..+.++.++...|.+.+ . .....|...|...|..+++..|+.+||..|+..
T Consensus 365 ~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 365 LYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 3556677777765542 24579999998888876 2 345566677888899999999999999999865
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=74.56 E-value=2.8 Score=29.27 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 85 KETVQECVSEY----ISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 85 keaIqecaseF----I~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
.+.|.+.+.-| |.-|..+|...|.++++..|+.+|+..||+++
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34444444434 66677788888999999999999999999864
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.80 E-value=5.2 Score=33.67 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=51.3
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 038325 61 MPIANVIRIMRRILP---PHAKISDDAKETVQECVS------EYISFITGEANERCHREQRKTITAEDVVWAMGKLGFD 130 (231)
Q Consensus 61 LPkA~I~RImK~aLP---~~~rISkDAkeaIqecas------eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~ 130 (231)
|....+..|++..+. ....++.++...|.+.+. ..+.-+...|...+..+++.+|+.+||..|++++..+
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 445667777776432 135789999988887765 2344566778888888899999999999999887543
No 56
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=69.97 E-value=10 Score=28.60 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=27.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 80 ISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 80 ISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
+++.++++|+. |.+.|.+.+...|..+|+|.||=
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl 35 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALL 35 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHHH
Confidence 46666666644 66778889999999999999984
No 57
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=69.70 E-value=6.8 Score=33.13 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=63.8
Q ss_pred CCCCCCcccc--CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 50 APCVVREQDQ--YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 50 ~~~~v~e~d~--~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
|.+.-++++. -+|.+.+.||.|.+. +.-|-|+-..-+...++.=+.-|.--|.+.|+.++|.+|...|+=
T Consensus 14 ~~~~~~~~~Mm~vmg~~kferlFR~aa--gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP------ 85 (171)
T 1r4v_A 14 HKNYSKIETMLRPKGFDKLDHYFRTEL--DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN------ 85 (171)
T ss_dssp -------CCTTSCTTHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC------
T ss_pred hccHHHHHHHHhcCChHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC------
Confidence 3444555555 789999999999998 678889999999999999998888899999999999999998862
Q ss_pred CCCcchHHHHHHHHHHHHH
Q 038325 128 GFDNYVEPLSIFLNRFRDS 146 (231)
Q Consensus 128 GF~dYv~~Lk~~L~~yRe~ 146 (231)
.-.-|++.+..||+.
T Consensus 86 ----ITKGlqEsi~~Fr~l 100 (171)
T 1r4v_A 86 ----ITKALEEHIKNFQKI 100 (171)
T ss_dssp ----CCHHHHHHHHHHHTC
T ss_pred ----ccHHHHHHHHHHHhc
Confidence 233455555555554
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=67.44 E-value=20 Score=33.99 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=40.1
Q ss_pred cccCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 78 AKISDDAKETVQECVS-------------EYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 78 ~rISkDAkeaIqecas-------------eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
..++.+|...|.+.+. .-+.-|...|...|..+++..|+.+||..|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4799999999888553 344556667888999999999999999999964
No 59
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=66.47 E-value=5.7 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 101 GEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 101 seAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
.+|...|.++++..|+.+|+..|+++.-
T Consensus 42 ~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 42 QEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 3566667777889999999999999863
No 60
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=66.46 E-value=13 Score=30.69 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=52.5
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccH
Q 038325 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDV 120 (231)
Q Consensus 61 LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDV 120 (231)
++.+.+.|++|.+. +.-|-|+-..-+...++.=+.-|.--|.+.|+.++|.+|...|+
T Consensus 3 m~~~~~e~lFR~aa--~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAA--GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHH--CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 67889999999998 67788988889999999999999999999999999999999886
No 61
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=65.60 E-value=24 Score=29.81 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=36.7
Q ss_pred CcccCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 77 HAKISDDAKETVQECVSEY-----------------------ISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 77 ~~rISkDAkeaIqecaseF-----------------------I~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
++.|++++.+.|.+.+... ...|...|...|.-++|..|+.+||..++...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5678888888887655321 22344556667778899999999999988754
No 62
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=64.44 E-value=5.8 Score=28.61 Aligned_cols=34 Identities=26% Similarity=0.224 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCC
Q 038325 96 ISFITGEANERCHREQRKTITAEDVVWAMGKLGF 129 (231)
Q Consensus 96 I~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF 129 (231)
|.-|..+|...|.++++..|+.+|+..||+++-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5556667777888889999999999999997643
No 63
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.81 E-value=27 Score=29.35 Aligned_cols=51 Identities=6% Similarity=-0.083 Sum_probs=40.5
Q ss_pred CcccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 77 HAKISDDAKETVQECVSE-------YISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 77 ~~rISkDAkeaIqecase-------FI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
.+.|++++.+.|.+.+.. -+..+...|...|..++|.+|+.+||..|+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 458999999999877653 345566667778888899999999999998754
No 64
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=63.55 E-value=6.2 Score=28.57 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 96 ISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 96 I~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
|.-|..+|...|.++.+..|+.+|+..||++.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33455677778888889999999999999864
No 65
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=63.44 E-value=16 Score=27.51 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=31.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 79 KISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 79 rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
+++..++.+|+. |.+.|.+.+...|..+|+|.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 577888888754 66779999999999999999996544
No 66
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=61.71 E-value=5.7 Score=27.85 Aligned_cols=33 Identities=27% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 96 ISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 96 I~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
|.-|..+|...|.++.+..|+.+|+..|+++.-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 344556777888888899999999999998753
No 67
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=58.64 E-value=13 Score=28.19 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=31.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 79 KISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 79 rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
+++..++++|+. |.+.|.+.+...|..+|+|.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 678888888755 66779999999999999999986544
No 68
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=58.56 E-value=11 Score=28.84 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=30.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 79 KISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 79 rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
+++..++.+|+. |.+.|.+.+...|..||||.||=+-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 578888888755 6777999999999999999998764
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.67 E-value=12 Score=31.78 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=46.5
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 61 MPIANVIRIMRRILP---PHAKISDDAKETVQECVS---E---YISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 61 LPkA~I~RImK~aLP---~~~rISkDAkeaIqecas---e---FI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
|....+..|++..+. ....++.++.+.+.+.+. - .+.-+...|...|. ++.+|+.+||..|++++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 456677777777432 245789999888887765 1 23345555666665 678999999999998764
No 70
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=55.65 E-value=12 Score=28.71 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=31.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 79 KISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 79 rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
+++..++.+|+. |.+.|.+.+...|..||||.||=+-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 688888888865 66779999999999999999997654
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=53.96 E-value=17 Score=27.54 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=40.9
Q ss_pred CchhHHHHHHHhhCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 61 MPIANVIRIMRRILPP-HAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 61 LPkA~I~RImK~aLP~-~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
++...+.++++..+.. +..++.++...|.+.+.--+..+.......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4566666777665421 3568999988887766544444444444444333 7899999998875
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.21 E-value=43 Score=28.87 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=46.9
Q ss_pred hhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCc
Q 038325 63 IANVIRIMRRILP-PHAKISDDAKETVQECVS---EYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDN 131 (231)
Q Consensus 63 kA~I~RImK~aLP-~~~rISkDAkeaIqecas---eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~d 131 (231)
...+..|+++... .++.++.|+...|.+.+. ..+.-+...+.+.|...++..|+.++|..||+.++++.
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 3455666654321 146788998888876532 23344445666777777888999999999999987654
No 73
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=47.73 E-value=37 Score=26.31 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 63 IANVIRIMRRILP-PHAKISDDAKETVQECVS----EYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 63 kA~I~RImK~aLP-~~~rISkDAkeaIqecas----eFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
...+.++++..+. .+..++.++.+.|.+.+. +.+.. ...+...+..++ ++|+.+||..+|+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~-l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDV-LDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHH-HHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 3445555555432 245789999888877654 22222 233444454444 5699999998875
No 74
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=47.42 E-value=23 Score=29.09 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 95 YISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 95 FI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
-|.-|...|...|...++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 466677888888999999999999999998754
No 75
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=43.84 E-value=29 Score=26.36 Aligned_cols=64 Identities=9% Similarity=0.138 Sum_probs=41.5
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 61 MPIANVIRIMRRILP-PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 61 LPkA~I~RImK~aLP-~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
|....+..+++..+. ....++.++.+.|.+.+.--..++.......+ ..++++|+.+||..++.
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAMLG 249 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHhC
Confidence 455666777765542 24578999988888777655555544433333 33456899999988863
No 76
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=43.38 E-value=31 Score=26.38 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=31.8
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 77 HAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 77 ~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
...+|.++...|.+ |...|+..+...|+.+|||.||-+-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 35678888777755 66678888999999999999987554
No 77
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=43.09 E-value=78 Score=21.70 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=45.0
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccCcccHHHHHhhc---C
Q 038325 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFI---------TGEANERCHREQRKTITAEDVVWAMGKL---G 128 (231)
Q Consensus 61 LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~L---------TseAne~c~~~kRKTItaeDVL~ALe~L---G 128 (231)
++...|.+|++..-. +-.|+-+- |+..+ ...+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~e----------F~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYKR----------FFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHHH----------HHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHHH----------HHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 566778888887643 44555432 33222 1345566667788899999999999998 6
Q ss_pred CCcchHHHHHHHH
Q 038325 129 FDNYVEPLSIFLN 141 (231)
Q Consensus 129 F~dYv~~Lk~~L~ 141 (231)
..--.+.++..+.
T Consensus 75 ~~~~~~~~~~~~~ 87 (109)
T 5pal_A 75 RDLNDTETKALLA 87 (109)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 6544445554444
No 78
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.78 E-value=43 Score=30.78 Aligned_cols=67 Identities=7% Similarity=0.219 Sum_probs=45.2
Q ss_pred CchhHHHHHHHhhCC--------CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCccCcccHHHHHhh
Q 038325 61 MPIANVIRIMRRILP--------PHAKISDDAKETVQECVS----EYISFITGEANERCHRE--QRKTITAEDVVWAMGK 126 (231)
Q Consensus 61 LPkA~I~RImK~aLP--------~~~rISkDAkeaIqecas----eFI~~LTseAne~c~~~--kRKTItaeDVL~ALe~ 126 (231)
++...+..|++..+. ..+.|+.++.+.|.+.+. ..+.. ...|...|... ++++|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~-Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT-LEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH-HHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH-HHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 567777777777654 246799999999988653 22222 22344445423 5678999999999987
Q ss_pred cC
Q 038325 127 LG 128 (231)
Q Consensus 127 LG 128 (231)
.-
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 79
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=39.73 E-value=69 Score=23.82 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=29.7
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 78 AKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 78 ~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
..+|..++.+|++ |...++.-+...|+.+||+.||-+-
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHhC
Confidence 4577777776654 6677888889999999999999653
No 80
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=39.60 E-value=25 Score=28.48 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=30.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 79 KISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 79 rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
+++..++.+|+. |.+.|.+.+...|..||+|.||=+-+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 567777777755 66679999999999999999997654
No 81
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=38.69 E-value=1.4e+02 Score=23.23 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCccCcccHHHHHhhc----CCC
Q 038325 101 GEANERCHREQRKTITAEDVVWAMGKL----GFD 130 (231)
Q Consensus 101 seAne~c~~~kRKTItaeDVL~ALe~L----GF~ 130 (231)
.+|....- ++.-+|+.+++..+|+.+ |+.
T Consensus 79 ~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 79 QHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIF 111 (174)
T ss_dssp HHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCC
T ss_pred HHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCC
Confidence 35777777 888899999999999999 875
No 82
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=38.10 E-value=68 Score=24.33 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=31.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 78 AKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 78 ~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
..+|.+++.+|.+ |...|+..+...|+.+|||.||-+-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 5688888888765 56668888999999999999986543
No 83
>3nzz_A Cell invasion protein SIPD; needle TIP protein, PRGI, SIPB, SIPC; 1.65A {Salmonella enterica} PDB: 3o02_A* 3o00_A 3o01_A* 2ym0_A
Probab=37.44 E-value=7.6 Score=35.54 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=43.0
Q ss_pred ccccccccccCCCCCCCCCCCccccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 038325 35 QQQQLPLQSLLPPAGAPCVVREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKT 114 (231)
Q Consensus 35 ~~~~~~~q~~~~~~~~~~~v~e~d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKT 114 (231)
+|.|+++|+.+. ..+...+++.|-+-...--+|..-...+.+|.+-+++|+.+.+.=-.++.+.|-. ...|.|
T Consensus 21 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 93 (308)
T 3nzz_A 21 HQAQQTLQSTPP----ISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSASPM---AQPRTT 93 (308)
T ss_dssp HHHHHHHHHCCS----CSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCC--------------------
T ss_pred HHHHHHHhcCCC----CccccchHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHhhCCCchhhcccCcc---cCCCCc
Confidence 466777777643 2233345667776665554554444467899999999998876655566555443 368999
Q ss_pred cCcccHHHHHhh
Q 038325 115 ITAEDVVWAMGK 126 (231)
Q Consensus 115 ItaeDVL~ALe~ 126 (231)
|+..|+...|+.
T Consensus 94 is~aElw~~I~~ 105 (308)
T 3nzz_A 94 ISDAEIWDMVSQ 105 (308)
T ss_dssp ----HHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 999998887774
No 84
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=37.32 E-value=65 Score=25.06 Aligned_cols=79 Identities=6% Similarity=0.066 Sum_probs=39.9
Q ss_pred CchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHH
Q 038325 61 MPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFL 140 (231)
Q Consensus 61 LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L 140 (231)
|....+.||-+-.- ..++.+.+...|.+..+.--.--..++....-.++--+|+.+++..+|+.+|+.--...+...+
T Consensus 22 l~~~~~~~l~~f~~--~~~lk~~~l~~i~~~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l~ 99 (197)
T 3pm8_A 22 LSSTLLKNLKNFKK--ENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVL 99 (197)
T ss_dssp CCTTHHHHHHHTTT--SCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHHHH
T ss_pred CCHHHHHHHHHHHH--ccHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 44555555544332 2344444444443332221111112344455567778999999999999998853333444433
Q ss_pred H
Q 038325 141 N 141 (231)
Q Consensus 141 ~ 141 (231)
.
T Consensus 100 ~ 100 (197)
T 3pm8_A 100 R 100 (197)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=36.63 E-value=25 Score=25.04 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=39.4
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccCcccHHHHHhhcC
Q 038325 77 HAKISDDAKETVQECVSEYISFITGEANE-RCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 77 ~~rISkDAkeaIqecaseFI~~LTseAne-~c~~~kRKTItaeDVL~ALe~LG 128 (231)
.+..+.||...|.+ +--|+.--.....+ .|...|...||.+.|..|-+.++
T Consensus 3 ~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 46789999999988 55666655554444 89999999999999998877655
No 86
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=36.04 E-value=1.4e+02 Score=25.96 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=46.7
Q ss_pred CchhHHHHHHHhhCCC-CcccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccCcccHHHH
Q 038325 61 MPIANVIRIMRRILPP-HAKISDDAKETVQECVSE----YISFITGEANERCHRE------------QRKTITAEDVVWA 123 (231)
Q Consensus 61 LPkA~I~RImK~aLP~-~~rISkDAkeaIqecase----FI~~LTseAne~c~~~------------kRKTItaeDVL~A 123 (231)
.+......|++..+.. ...++.++...|.+.+.- -|..|...|...+.++ ....|+.+|+..+
T Consensus 282 p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~a 361 (389)
T 3vfd_A 282 PNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTES 361 (389)
T ss_dssp CCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHH
Confidence 3445555666665532 356888888888776543 4556666666666655 4568999999999
Q ss_pred HhhcCCC
Q 038325 124 MGKLGFD 130 (231)
Q Consensus 124 Le~LGF~ 130 (231)
|+.+.-.
T Consensus 362 l~~~~~s 368 (389)
T 3vfd_A 362 LKKIKRS 368 (389)
T ss_dssp HHHCCCS
T ss_pred HHHcCCC
Confidence 9976543
No 87
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=35.86 E-value=30 Score=28.07 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 96 ISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 96 I~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
|..+..+|...|...++++|+.+||..|++++-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 445666777888888999999999999998753
No 88
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=35.50 E-value=1.2e+02 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHH
Q 038325 102 EANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFL 140 (231)
Q Consensus 102 eAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L 140 (231)
.+....-.++.-.|+.+++..+|..+|..-=.+.++..+
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 138 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344455566777899999999999998654344444433
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=33.82 E-value=1.3e+02 Score=25.51 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=49.3
Q ss_pred CchhHHHHHHHhhCC---CCcccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 61 MPIANVIRIMRRILP---PHAKISDDAKETVQECVS---------EYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 61 LPkA~I~RImK~aLP---~~~rISkDAkeaIqecas---------eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
|....+..|++..+. ....++.++...|.+.+. .++..|...|...+...++.+|+.+||..++.++.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 455667777754321 123588898888887776 36777777788888888899999999998887764
No 90
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.97 E-value=24 Score=32.81 Aligned_cols=31 Identities=32% Similarity=0.292 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 96 ISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 96 I~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
|.-|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6677788888899999999999999999864
No 91
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=32.77 E-value=23 Score=24.82 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=19.1
Q ss_pred cCcccHHHHHhhcCCCcchHHHH
Q 038325 115 ITAEDVVWAMGKLGFDNYVEPLS 137 (231)
Q Consensus 115 ItaeDVL~ALe~LGF~dYv~~Lk 137 (231)
=+.+||..-|+.+||++|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36889999999999999887553
No 92
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=32.71 E-value=1.6e+02 Score=22.16 Aligned_cols=29 Identities=7% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 038325 102 EANERCHREQRKTITAEDVVWAMGKLGFD 130 (231)
Q Consensus 102 eAne~c~~~kRKTItaeDVL~ALe~LGF~ 130 (231)
++...+-.++--+|+.+++..+|+.+|+.
T Consensus 43 ~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 43 ELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 34555666777899999999999999986
No 93
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=32.55 E-value=1.3e+02 Score=24.56 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=39.0
Q ss_pred cccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCccCcccHHHHHhhcCCCcchHHHH
Q 038325 78 AKISDDAKETVQECVSE----YISFITGEANERCHREQ------------RKTITAEDVVWAMGKLGFDNYVEPLS 137 (231)
Q Consensus 78 ~rISkDAkeaIqecase----FI~~LTseAne~c~~~k------------RKTItaeDVL~ALe~LGF~dYv~~Lk 137 (231)
..++.++...|.+.+.- -|..|..+|...+.++. ...|+.+|+..|++.+.-.-..+.++
T Consensus 207 ~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 207 SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 34778887777765543 33455556655555543 36799999999999876554444433
No 94
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.46 E-value=32 Score=32.48 Aligned_cols=68 Identities=25% Similarity=0.181 Sum_probs=42.1
Q ss_pred ccCCchhHH-HHHHHhhCCCCcccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 58 DQYMPIANV-IRIMRRILPPHAKISDDA-KETVQECVS----EYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 58 d~~LPkA~I-~RImK~aLP~~~rISkDA-keaIqecas----eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
.+.+|-..- ..|++-.+ ..+.++.|. .+.|.+.+. .=|.-|..+|...|.+++|..|+.+|+..|+++
T Consensus 349 ~v~lPd~~~R~~Il~~~l-~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 349 LFENPDLSTKKKILGIHT-SKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCCCHHHHHHHHHHHH-TTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHh-cCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 344554322 34444444 234444442 344444332 236677788888999999999999999999874
No 95
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=31.87 E-value=94 Score=21.25 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 038325 102 EANERCHREQRKTITAEDVVWAMGKLGFD 130 (231)
Q Consensus 102 eAne~c~~~kRKTItaeDVL~ALe~LGF~ 130 (231)
.+....-.++.-.|+.+++..+|..+|+.
T Consensus 28 ~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 28 QEFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 35556667778899999999999999876
No 96
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.48 E-value=34 Score=31.82 Aligned_cols=32 Identities=34% Similarity=0.366 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 95 YISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 95 FI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
=|.-|..+|...|.+++|..|+.+|+..||++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 36677778888899999999999999999875
No 97
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.43 E-value=32 Score=32.78 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 96 ISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 96 I~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
|.-|..+|...|.+++|+.|+.+|++.|+++.
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 56677888888999999999999999999753
No 98
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.73 E-value=36 Score=31.77 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 96 ISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 96 I~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
|..|..+|...|.+++|..|+.+|+..||++
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5667778888899999999999999999875
No 99
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.68 E-value=35 Score=31.81 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 95 YISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 95 FI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
=|.-|..+|...|.+++++.|+.+|++.||++.
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 366677788888989999999999999999764
No 100
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=29.81 E-value=84 Score=25.55 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=31.3
Q ss_pred cccCHHHHHHHHHHHHH------------HHHHHHH---H-HHHHHHhcCCC-ccCcccHHHHHhhcCC
Q 038325 78 AKISDDAKETVQECVSE------------YISFITG---E-ANERCHREQRK-TITAEDVVWAMGKLGF 129 (231)
Q Consensus 78 ~rISkDAkeaIqecase------------FI~~LTs---e-Ane~c~~~kRK-TItaeDVL~ALe~LGF 129 (231)
..|++++.+.|.+.+.. ....|-. . +.+.+..++++ +|+.+||..+++++..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 57999999999887632 1222221 1 11222233333 6999999999987643
No 101
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=29.50 E-value=28 Score=24.66 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.0
Q ss_pred ccCcccHHHHHhhcCCCcchHHHH
Q 038325 114 TITAEDVVWAMGKLGFDNYVEPLS 137 (231)
Q Consensus 114 TItaeDVL~ALe~LGF~dYv~~Lk 137 (231)
.-+.+||..-|+.+||++|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987554
No 102
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=29.47 E-value=1e+02 Score=25.87 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=48.6
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 038325 61 MPIANVIRIMRRILP-PHAKISDDAKETVQECVSE---YISFITGEANERCHREQRKTITAEDVVWAMGKLGFD 130 (231)
Q Consensus 61 LPkA~I~RImK~aLP-~~~rISkDAkeaIqecase---FI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~ 130 (231)
++...+..|++..+. ....++.++.+.|.+.+.- .+.-+...+...|...++.+|+.+||..++..+++.
T Consensus 184 ~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 184 YKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 345556666665542 2467999999988874332 233444556667877888999999999999987765
No 103
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=29.22 E-value=32 Score=32.93 Aligned_cols=57 Identities=9% Similarity=0.220 Sum_probs=42.3
Q ss_pred HhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--cccHHHHHhhc
Q 038325 71 RRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTIT--AEDVVWAMGKL 127 (231)
Q Consensus 71 K~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTIt--aeDVL~ALe~L 127 (231)
|+++.+.--|-+|.+.+|++||...=.||.....+.-..++++++. ..+|..+|..+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATF 485 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445578899999999999999999998776666666666654 45777777764
No 104
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=28.99 E-value=87 Score=19.14 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHH
Q 038325 103 ANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIF 139 (231)
Q Consensus 103 Ane~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~ 139 (231)
+....-.++.-.|+.+++..+|..+|..--...+...
T Consensus 6 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 42 (67)
T 1tiz_A 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKF 42 (67)
T ss_dssp HHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3344455666788888888888888865433344433
No 105
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=28.95 E-value=58 Score=26.96 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=46.2
Q ss_pred CchhHHHHHHHhhCCC-CcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCC
Q 038325 61 MPIANVIRIMRRILPP-HAKISDDAKETVQECVS---EYISFITGEANERCHREQRKTITAEDVVWAMGKLGFD 130 (231)
Q Consensus 61 LPkA~I~RImK~aLP~-~~rISkDAkeaIqecas---eFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~ 130 (231)
++...+..+++..+.. +..++.++.+.|.+.+. ..+..+...+...|...+...|+.+|+..+++.+..+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 5566667777665422 45799999988887652 2233333344444555567789999999999877654
No 106
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=28.52 E-value=31 Score=24.49 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=36.4
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccCcccHHHHHhhc
Q 038325 78 AKISDDAKETVQECVSEYISFITGEANE-RCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 78 ~rISkDAkeaIqecaseFI~~LTseAne-~c~~~kRKTItaeDVL~ALe~L 127 (231)
+..+.||...|.+ +--|+.--.....+ .|...|...||.+.+..|-+.+
T Consensus 3 l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKN-IPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHT-SCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 5678888888887 44566554444444 8999999999999998886654
No 107
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=28.05 E-value=71 Score=23.96 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=28.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 78 AKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 78 ~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
..+|..+...|+. |...++.-+...|+.+|++.||=+-
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~~ 115 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhC
Confidence 4567776666644 6667777888999999999998643
No 108
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=27.85 E-value=23 Score=26.65 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=19.9
Q ss_pred ccCcccHHHHHhhcCCCcchHHH
Q 038325 114 TITAEDVVWAMGKLGFDNYVEPL 136 (231)
Q Consensus 114 TItaeDVL~ALe~LGF~dYv~~L 136 (231)
.-+.+||..-|+.+||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 45889999999999999998664
No 109
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=27.68 E-value=24 Score=28.27 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 95 YISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 95 FI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
-|.-|..+|...|..+++++|+.+||..|++++
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 355566667777778888999999999888764
No 110
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.63 E-value=47 Score=27.73 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=41.2
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CccCcccHHHHHhhcC
Q 038325 61 MPIANVIRIMRRILP-PHAKISDDAKETVQECVS----EYISFITGEANERCHREQR-KTITAEDVVWAMGKLG 128 (231)
Q Consensus 61 LPkA~I~RImK~aLP-~~~rISkDAkeaIqecas----eFI~~LTseAne~c~~~kR-KTItaeDVL~ALe~LG 128 (231)
++...+..+++..+. .++.|+.++.+.|.+.+. ..+..|-. +...+.+.++ +.|+.+||..++..+.
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~-~~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS-ASKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHH-THHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH-HHHhcCCCccCccccHHHHHHHhCCCC
Confidence 455566666665442 356799999988887643 33333333 2333443333 3899999999888543
No 111
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=27.56 E-value=1.1e+02 Score=26.62 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=38.9
Q ss_pred HHHHHHHhhCC-CCcccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh------------cCCCccCcccHHHHHhhc
Q 038325 65 NVIRIMRRILP-PHAKISDDAKETVQECVSE----YISFITGEANERCHR------------EQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 65 ~I~RImK~aLP-~~~rISkDAkeaIqecase----FI~~LTseAne~c~~------------~kRKTItaeDVL~ALe~L 127 (231)
....|++..+. ....+++++.+.|.+.+.- -|..|..+|...+.+ ...+.|+.+|+..||++.
T Consensus 255 ~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 33444444432 1345788887777765443 455666666655554 234689999999999875
Q ss_pred C
Q 038325 128 G 128 (231)
Q Consensus 128 G 128 (231)
.
T Consensus 335 ~ 335 (357)
T 3d8b_A 335 R 335 (357)
T ss_dssp G
T ss_pred C
Confidence 4
No 112
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=26.56 E-value=1.5e+02 Score=20.11 Aligned_cols=80 Identities=6% Similarity=-0.036 Sum_probs=44.6
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc---CCCcchHHH
Q 038325 60 YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL---GFDNYVEPL 136 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L---GF~dYv~~L 136 (231)
.+...-|.++++..= .+-.|+-+--..+......- .--...+....-.++.-.|+.+++..+|..+ |..--.+.+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 83 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYKSFFSTVGLSSKT-PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAET 83 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHTCTTCC-HHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHH
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHHHHHHHHhcCCCc-HHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHH
Confidence 366777888888764 34456543221111000000 0012345566667778899999999999999 554334444
Q ss_pred HHHHH
Q 038325 137 SIFLN 141 (231)
Q Consensus 137 k~~L~ 141 (231)
+..+.
T Consensus 84 ~~~~~ 88 (109)
T 3fs7_A 84 KAFLA 88 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 113
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.85 E-value=94 Score=21.23 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=25.2
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHH
Q 038325 60 YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEY 95 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseF 95 (231)
.+..++|.|++...- ....||.|.++.|.+++.++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 467888889887642 12368888888888877654
No 114
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=25.14 E-value=82 Score=25.34 Aligned_cols=39 Identities=15% Similarity=-0.014 Sum_probs=31.7
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccCcccHHHHHhhc
Q 038325 77 HAKISDDAKETVQECVSEYISFITGEANERCH-REQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 77 ~~rISkDAkeaIqecaseFI~~LTseAne~c~-~~kRKTItaeDVL~ALe~L 127 (231)
...+|.+++.+|++ |...++ +-+...|+.+|||.||-+-
T Consensus 96 ~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~ 135 (171)
T 3zri_A 96 YPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTR 135 (171)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhC
Confidence 35688888888866 667788 8899999999999998543
No 115
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=24.87 E-value=1.8e+02 Score=21.10 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHH
Q 038325 101 GEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLN 141 (231)
Q Consensus 101 seAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L~ 141 (231)
..|....-.++.-+|+.+++..+|..+|..--...++..+.
T Consensus 86 ~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 126 (148)
T 2lmt_A 86 REAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIR 126 (148)
T ss_dssp HHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHH
Confidence 35666777788889999999999999998765555555444
No 116
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=24.72 E-value=98 Score=28.24 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=32.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCC
Q 038325 79 KISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGF 129 (231)
Q Consensus 79 rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF 129 (231)
+++..++.+|.. |.+.|.+.+...|+.+|+|.||=.-+=
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~~ 43 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGE 43 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccC
Confidence 678888888755 667799999999999999999976543
No 117
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=24.63 E-value=1.6e+02 Score=20.01 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 102 EANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 102 eAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
.+....-.++.-.|+.+++..+|..++
T Consensus 46 ~~F~~~D~d~~G~I~~~el~~~l~~~~ 72 (110)
T 1pva_A 46 KVFKAIDADASGFIEEEELKFVLKSFA 72 (110)
T ss_dssp HHHHHHCTTCSSSBCHHHHHTGGGGTC
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 455666677888999999999999993
No 118
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.17 E-value=56 Score=26.41 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=34.5
Q ss_pred HHHHHhhCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 67 IRIMRRILPPHAKISDDA-KETVQECVSE----YISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 67 ~RImK~aLP~~~rISkDA-keaIqecase----FI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
.+|++..+ ....++.|+ ...|.+...- -|.-+..+|...|..+++.+|+.+|+..|++
T Consensus 192 ~~il~~~~-~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 192 EQILRIHA-RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHH-TTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHH-cCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 34555433 233444443 3444443332 2344555677778888889999999998873
No 119
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=24.12 E-value=1.8e+02 Score=20.16 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHHH
Q 038325 102 EANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNRF 143 (231)
Q Consensus 102 eAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L~~y 143 (231)
.+....-.++.-.|+.+++..+|..+|..-=.+.++..+..+
T Consensus 88 ~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 88 EAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 345555567778999999999999998654444555554443
No 120
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=23.48 E-value=75 Score=21.18 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=25.0
Q ss_pred HHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHH
Q 038325 103 ANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIF 139 (231)
Q Consensus 103 Ane~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~ 139 (231)
+....-.++.-.|+.+++..+|+.+|+.-=...++..
T Consensus 25 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l 61 (90)
T 1avs_A 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAI 61 (90)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3444456677789999999999999875333344433
No 121
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=23.42 E-value=1.2e+02 Score=20.89 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHH
Q 038325 103 ANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIF 139 (231)
Q Consensus 103 Ane~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~ 139 (231)
+....-.++.-.|+.+++..+|..+|..-=...++..
T Consensus 34 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l 70 (94)
T 2kz2_A 34 AFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 70 (94)
T ss_dssp HHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3444556777789999999999999875333334333
No 122
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=23.31 E-value=2.2e+02 Score=27.44 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=38.6
Q ss_pred cCCchhHHHHHHHhhC--CCCcccCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhcCCCcc
Q 038325 59 QYMPIANVIRIMRRIL--PPHAKISDDAKETVQECVSEY---------------------ISFITGEANERCHREQRKTI 115 (231)
Q Consensus 59 ~~LPkA~I~RImK~aL--P~~~rISkDAkeaIqecaseF---------------------I~~LTseAne~c~~~kRKTI 115 (231)
..++...+.+.+..+= --...|++++.+.|.+....- +..|...|...|.-.+|..|
T Consensus 392 ~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V 471 (506)
T 3f8t_A 392 EVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDV 471 (506)
T ss_dssp --CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCC
Confidence 3477777777665442 115689999888776643321 11233445555666666666
Q ss_pred CcccHHHHHh
Q 038325 116 TAEDVVWAMG 125 (231)
Q Consensus 116 taeDVL~ALe 125 (231)
+.+||..|++
T Consensus 472 ~~eDV~~Ai~ 481 (506)
T 3f8t_A 472 EPEDVDIAAE 481 (506)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6666666654
No 123
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=23.16 E-value=2.1e+02 Score=21.03 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=41.9
Q ss_pred CCchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHH
Q 038325 60 YMPIANVIRIMRRILP-PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSI 138 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP-~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~ 138 (231)
.++...+.++++..-. .+.+|+-+--..+.... --...+....-.++.-+|+.+++..+|..+|..-=...++.
T Consensus 43 ~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-----~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~ 117 (173)
T 1alv_A 43 GFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI-----KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSM 117 (173)
T ss_dssp CCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-----HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH-----HHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455666777766532 23456543322221111 11234555666677889999999999999987533333333
No 124
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=22.83 E-value=1.5e+02 Score=21.39 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHH
Q 038325 102 EANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLN 141 (231)
Q Consensus 102 eAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L~ 141 (231)
.|....-.++.-+|+.+++..+|..+|..-=.+.+...+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4556666777789999999999999986533334444443
No 125
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=22.71 E-value=1.1e+02 Score=22.28 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCC
Q 038325 102 EANERCHREQRKTITAEDVVWAMGKLGF 129 (231)
Q Consensus 102 eAne~c~~~kRKTItaeDVL~ALe~LGF 129 (231)
.|....-.++.-.|+.+++..+|..+|+
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3455556667778888999888888886
No 126
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.70 E-value=66 Score=27.08 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=40.1
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcC
Q 038325 61 MPIANVIRIMRRILP-PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLG 128 (231)
Q Consensus 61 LPkA~I~RImK~aLP-~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LG 128 (231)
++...+..+++..+. .++.++.++...|.+.+.--+..+.......+. ....+|+.+||..++....
T Consensus 178 l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~~~~ 245 (373)
T 1jr3_A 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLD 245 (373)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhCCCC
Confidence 556667777765542 146789999888877654433333333222222 2346789999888776543
No 127
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=22.62 E-value=44 Score=24.46 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=19.8
Q ss_pred ccCcccHHHHHhhc-CCCcchHHHH
Q 038325 114 TITAEDVVWAMGKL-GFDNYVEPLS 137 (231)
Q Consensus 114 TItaeDVL~ALe~L-GF~dYv~~Lk 137 (231)
.-+.+||..-|+.+ ||++|++..+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45789999999999 9998876554
No 128
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=22.47 E-value=1.9e+02 Score=19.66 Aligned_cols=80 Identities=9% Similarity=-0.050 Sum_probs=44.6
Q ss_pred CCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc---CCCcchHHH
Q 038325 60 YMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL---GFDNYVEPL 136 (231)
Q Consensus 60 ~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L---GF~dYv~~L 136 (231)
.+....|.+|++..- .+..|+-+--..+......-. --...+....-.++.-+|+.+++..+|..+ |..--...+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~-~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYKAFFAKVGLTAKSA-DDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAET 83 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCH-HHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhhH-HHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHH
Confidence 466677888888764 344566432221110000000 011345556667777899999999999999 554333444
Q ss_pred HHHHH
Q 038325 137 SIFLN 141 (231)
Q Consensus 137 k~~L~ 141 (231)
+..+.
T Consensus 84 ~~~~~ 88 (109)
T 1bu3_A 84 KAFLK 88 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 129
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=22.23 E-value=3.5e+02 Score=26.23 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=48.3
Q ss_pred ccCCchhHHHHHHHhhCCC-----CcccCHHHHHHHHHH----------HHHHHHHHHH-----HHHHHHHhcCCCccCc
Q 038325 58 DQYMPIANVIRIMRRILPP-----HAKISDDAKETVQEC----------VSEYISFITG-----EANERCHREQRKTITA 117 (231)
Q Consensus 58 d~~LPkA~I~RImK~aLP~-----~~rISkDAkeaIqec----------aseFI~~LTs-----eAne~c~~~kRKTIta 117 (231)
+-.|...-+..+++..+.. ...++.+....|-+. -.||+.++.. .+....-.++.-+|+.
T Consensus 545 dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~ 624 (714)
T 3bow_A 545 DAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNS 624 (714)
T ss_dssp GTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHHHHHHHHHHHHCTTCCSSEEH
T ss_pred CCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeECH
Confidence 4456666666777665321 234555444443332 2456655543 4555666778889999
Q ss_pred ccHHHHHhhcCCCcchHHHHH
Q 038325 118 EDVVWAMGKLGFDNYVEPLSI 138 (231)
Q Consensus 118 eDVL~ALe~LGF~dYv~~Lk~ 138 (231)
+++..+|+.+|+.-=.+.++.
T Consensus 625 ~El~~~L~~~G~~ls~~~~~~ 645 (714)
T 3bow_A 625 YEMRKALEEAGFKLPCQLHQV 645 (714)
T ss_dssp HHHHHHHHHTTEECCHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHH
Confidence 999999999986533333333
No 130
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=21.90 E-value=1.7e+02 Score=19.07 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=31.0
Q ss_pred HHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038325 66 VIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANE 105 (231)
Q Consensus 66 I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne 105 (231)
|+.+|-.-. |...-..|...+|.+.+.+||..++.+|.+
T Consensus 6 i~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555444 556688999999999999999999998865
No 131
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=21.76 E-value=32 Score=23.65 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.0
Q ss_pred cCcccHHHHHhhcCCCcchHHH
Q 038325 115 ITAEDVVWAMGKLGFDNYVEPL 136 (231)
Q Consensus 115 ItaeDVL~ALe~LGF~dYv~~L 136 (231)
=+.+||..-|+.+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999988877644
No 132
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.57 E-value=65 Score=26.59 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHhhCCCCcccCHHH-HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccCcccHHHHHh
Q 038325 66 VIRIMRRILPPHAKISDDA-KETVQECVSE----YISFITGEANERCHREQRKTITAEDVVWAMG 125 (231)
Q Consensus 66 I~RImK~aLP~~~rISkDA-keaIqecase----FI~~LTseAne~c~~~kRKTItaeDVL~ALe 125 (231)
..+|++..+. ...++.|+ ...|.+...- -|.-+..+|...|..+++.+|+.+||..|++
T Consensus 215 r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 215 REQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 3445554432 33455444 3444433322 2334555677778888888999999998874
No 133
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=21.46 E-value=2.9e+02 Score=26.28 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=62.1
Q ss_pred ccCCchhHHHHHHHhhCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CcccHHHHHh-hcCCCc----
Q 038325 58 DQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTI-TAEDVVWAMG-KLGFDN---- 131 (231)
Q Consensus 58 d~~LPkA~I~RImK~aLP~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTI-taeDVL~ALe-~LGF~d---- 131 (231)
++++|...|---|... +++|..+....+.+....-+..|..++.+.+-.. --+ ++.+|...|- +||+.-
T Consensus 140 ~iE~pl~~vl~~me~~---Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~~--fN~~Spkql~~~Lf~~lgl~~~~kt 214 (540)
T 4dfk_A 140 EVERPLSAVLAHMEAT---GVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP--FNLNSRDQLERVLFDELGLPAIGKT 214 (540)
T ss_dssp HTHHHHHHHHHHHHHH---CBEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--CCTTCHHHHHHHHHTTSCCCCCCBC
T ss_pred HHHhHHHHHHHHHHhc---CEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHHhcCCCCCCCC
Confidence 5678888888888877 4999999999999999999999998888876321 111 4455555553 455431
Q ss_pred ----c---h----------HHHHHHHHHHHHHHHHHhh
Q 038325 132 ----Y---V----------EPLSIFLNRFRDSEHERTA 152 (231)
Q Consensus 132 ----Y---v----------~~Lk~~L~~yRe~~~~rk~ 152 (231)
| . .++-..|-+||+..+.+..
T Consensus 215 ~ktg~st~~~vL~e~L~~~~p~~~~ile~R~l~Kl~st 252 (540)
T 4dfk_A 215 EKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKST 252 (540)
T ss_dssp TTTCCBCCCHHHHHHTTTTCTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Confidence 1 0 1233466689998887765
No 134
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=21.19 E-value=2e+02 Score=21.58 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=37.6
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHH
Q 038325 75 PPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFL 140 (231)
Q Consensus 75 P~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L 140 (231)
|..+++|++-...|.+ |....-.++--+|+.+++..+|+.||+.--...+...+
T Consensus 5 ~~~~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccccCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 4456788877766654 44455566777899999999999999976555555444
No 135
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=21.17 E-value=90 Score=26.34 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=38.4
Q ss_pred cCCchhHHHHHHHhhC-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 59 QYMPIANVIRIMRRIL-PPHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 59 ~~LPkA~I~RImK~aL-P~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
..|--+++.+++|++- =++.+|+.-..+.| ...++..+.++|+.++.+.||+.|
T Consensus 28 ~eMd~~~F~KlcKD~~liDgk~~T~tdvDIi---------------F~KvK~k~~rkI~feqF~~aL~~l 82 (184)
T 2jrf_A 28 QEMNGKNWAKLCKDCKVADGKSVTGTDVDIV---------------FSKVKGKSARVINYEEFKKALEEL 82 (184)
T ss_dssp SEEEHHHHHHHHHHTTCCCSSSSCHHHHHHH---------------HHHHCCSCCSEEEHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHcCCccCCCCChhhcchh---------------hheeccCcceeecHHHHHHHHHHH
Confidence 3588889999999983 23356776666654 334555566789999998888764
No 136
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=21.02 E-value=77 Score=28.59 Aligned_cols=70 Identities=4% Similarity=0.096 Sum_probs=48.4
Q ss_pred hCCCCcc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CcccHHHHHhhcCCCcchHHHHHHHHHHH
Q 038325 73 ILPPHAK---ISDDAKETVQECVSEYISFITGEANERCHREQRKTI-TAEDVVWAMGKLGFDNYVEPLSIFLNRFR 144 (231)
Q Consensus 73 aLP~~~r---ISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTI-taeDVL~ALe~LGF~dYv~~Lk~~L~~yR 144 (231)
.+|...+ ++.|-.+.+....+.--.|+........... + .. .-++.+.-|+.+|+++|++..+..+++|+
T Consensus 461 ~~p~~~~~~~~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~-~-~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 461 YIPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKTATWMSKG-G-IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCCTTCSGGGSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHC-C-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCchhccCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C-cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 3555443 7777777777666665556555444444333 2 22 25678889999999999999999999986
No 137
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=20.85 E-value=32 Score=32.85 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=34.8
Q ss_pred ccCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcCCCccCcccHHHHHhhc
Q 038325 79 KISDDAKETVQECVSE------------------YISFITGEANERCHREQRKTITAEDVVWAMGKL 127 (231)
Q Consensus 79 rISkDAkeaIqecase------------------FI~~LTseAne~c~~~kRKTItaeDVL~ALe~L 127 (231)
.+++++.+.|.+.... -+.-|...|...|.-.+|.+|+.+||..|++-+
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 6777777777665322 133455667777888899999999999998643
No 138
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=20.68 E-value=1.2e+02 Score=19.68 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHH
Q 038325 103 ANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFL 140 (231)
Q Consensus 103 Ane~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L 140 (231)
+....-.++.-.|+.+++..+|+.+|+.-=...+...+
T Consensus 19 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34445566777899999999999998754334444433
No 139
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=20.62 E-value=3.7e+02 Score=25.04 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHHH
Q 038325 102 EANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLNR 142 (231)
Q Consensus 102 eAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L~~ 142 (231)
.+....-.++.-+|+.+++..+|+.+|+.-=.+.++..+..
T Consensus 389 ~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~ 429 (450)
T 3sg6_A 389 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIRE 429 (450)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 35666667778899999999999999976444455554443
No 140
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=20.37 E-value=1.2e+02 Score=25.83 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=36.0
Q ss_pred CchhHHHHHHHhhCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhh
Q 038325 61 MPIANVIRIMRRILP-PHAKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGK 126 (231)
Q Consensus 61 LPkA~I~RImK~aLP-~~~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~ 126 (231)
++...+.+.+++.+- .++.|+.+|...|.+.+.-=+..+..+-...+.-.+.++|+.+||...+..
T Consensus 142 l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp CCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 445555555544432 357899999999887654322222222222222223457888887665543
No 141
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.36 E-value=78 Score=22.71 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=35.1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHhhcCCCcchHHHHHHHH
Q 038325 78 AKISDDAKETVQECVSEYISFITGEANERCHREQRKTITAEDVVWAMGKLGFDNYVEPLSIFLN 141 (231)
Q Consensus 78 ~rISkDAkeaIqecaseFI~~LTseAne~c~~~kRKTItaeDVL~ALe~LGF~dYv~~Lk~~L~ 141 (231)
..++.+-...|.+ |....-.++.-+|+.+++..+|+.+|+.-=...++..++
T Consensus 28 ~~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 28 VDIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456665555543 566677788889999999999999998633334444433
No 142
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=20.02 E-value=1.2e+02 Score=19.22 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=19.1
Q ss_pred HHHHHhcCCCccCcccHHHHHhhcCCC
Q 038325 104 NERCHREQRKTITAEDVVWAMGKLGFD 130 (231)
Q Consensus 104 ne~c~~~kRKTItaeDVL~ALe~LGF~ 130 (231)
....-.++.-.|+.+++..+|+.+|+.
T Consensus 13 F~~~D~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 13 FDLFDTNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp HHHHCCSSSSEEEHHHHHHHHHHHTCC
T ss_pred HHHhCCCCCCCCcHHHHHHHHHHhCCC
Confidence 334445566678888888888888765
Done!