Query 038326
Match_columns 230
No_of_seqs 105 out of 168
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2072 Translation initiation 100.0 1.2E-34 2.5E-39 286.7 24.6 204 6-213 545-766 (988)
2 KOG1029 Endocytic adaptor prot 86.7 47 0.001 35.3 20.4 45 7-58 316-360 (1118)
3 KOG1029 Endocytic adaptor prot 68.2 1.4E+02 0.003 32.0 13.4 44 121-164 441-500 (1118)
4 KOG1144 Translation initiation 63.4 99 0.0021 33.1 11.4 77 23-104 217-299 (1064)
5 PTZ00121 MAEBL; Provisional 55.9 3.8E+02 0.0082 31.0 22.8 30 127-156 1256-1287(2084)
6 KOG4661 Hsp27-ERE-TATA-binding 50.8 3.1E+02 0.0067 28.6 12.3 36 16-51 596-631 (940)
7 KOG1144 Translation initiation 42.8 4.2E+02 0.0091 28.6 12.1 7 70-76 245-251 (1064)
8 KOG3654 Uncharacterized CH dom 36.2 3.2E+02 0.0069 28.0 9.7 78 22-104 384-463 (708)
9 KOG4661 Hsp27-ERE-TATA-binding 32.6 4.1E+02 0.0089 27.7 10.0 17 126-142 736-752 (940)
10 KOG2412 Nuclear-export-signal 28.1 4.9E+02 0.011 26.7 9.6 65 26-96 210-274 (591)
11 PRK11820 hypothetical protein; 23.0 6E+02 0.013 23.4 9.3 86 126-216 154-240 (288)
12 PF05672 MAP7: MAP7 (E-MAP-115 22.8 5E+02 0.011 22.4 13.7 30 121-152 122-151 (171)
13 PF10187 Nefa_Nip30_N: N-termi 20.5 2.1E+02 0.0045 22.5 4.5 47 165-212 36-82 (102)
No 1
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-34 Score=286.68 Aligned_cols=204 Identities=32% Similarity=0.421 Sum_probs=186.2
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038326 6 ASKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQ 85 (230)
Q Consensus 6 ~~~r~~~l~~~~~~~~~~Eh~~il~Rk~iIE~RK~E~~E~~~~eke~eea~~r~~~~~~~~~~~aEq~RL~eE~~rRe~e 85 (230)
.+....++. +|..++..||++|++|+++||.|| +.+|+++.+++.+++..+..++... ++||++||.+|..+|+.+
T Consensus 545 ~~~~~~~v~-~~~~~v~~E~krilaRk~liE~rK-e~~E~~~~~re~Eea~~q~~e~~~~--r~aE~kRl~ee~~Ere~~ 620 (988)
T KOG2072|consen 545 AKKKEGAVT-NYLKNVDKEHKRILARKSLIEKRK-EDLEKQNVEREAEEAQEQAKEQRQA--REAEEKRLIEEKKEREAK 620 (988)
T ss_pred HHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 677888999 999999999999999999999999 9999999999999999995555444 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchh-ccccc--CcChH---------------HHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 038326 86 RILLIQLEGAQALLDEEAEKCSSS-KKKEA--KKPIM---------------DQQLRERQEMDKKLRKLAKTLNYLERAN 147 (230)
Q Consensus 86 R~~rE~~~e~kk~~~e~l~k~~~s-~G~k~--~~d~~---------------eql~KeKkEl~~KLk~~~KklDhlERA~ 147 (230)
|+.+|......+.+.+++..++++ +|.|+ ++|++ ++++|+++||+.||+.++|+|||||||+
T Consensus 621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 621 RILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKKIDHLERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999997777777777767666665 67665 33333 4999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhhhhhhhHHHhHHHHhhhc
Q 038326 148 REEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKESIGFQEAKSVRARSKTTAQKTN 213 (230)
Q Consensus 148 R~EEiPLLek~~e~q~~~D~~~~e~~~~~~ie~ak~ehe~~l~~K~RL~r~~~d~~~~~~~~~~~~ 213 (230)
|+|||||++++|..+++.|+++|+.+++.+|..++.+|+.+|++++||++|++|+..|+..|..++
T Consensus 701 R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~d~~~f~e~vk~~r 766 (988)
T KOG2072|consen 701 RLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKRLSRMYDDRDKFKEHVKGER 766 (988)
T ss_pred HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999998775
No 2
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.73 E-value=47 Score=35.30 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=20.4
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038326 7 SKVGEMLSAGLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRR 58 (230)
Q Consensus 7 ~~r~~~l~~~~~~~~~~Eh~~il~Rk~iIE~RK~E~~E~~~~eke~eea~~r 58 (230)
++|...|. .=...+++-++.+++ +.|| |.-+..+.++++++...|
T Consensus 316 DKrkeNy~-kGqaELerRRq~lee-----qqqr-eree~eqkEreE~ekker 360 (1118)
T KOG1029|consen 316 DKRKENYE-KGQAELERRRQALEE-----QQQR-EREEVEQKEREEEEKKER 360 (1118)
T ss_pred hhhHHhHh-hhhHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHH
Confidence 55555555 334444433333332 2344 544445555555444444
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.15 E-value=1.4e+02 Score=32.03 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH----------------HHhhhhhhchhHHHHHHHHHH
Q 038326 121 QQLRERQEMDKKLRKLAKTLNYL----------------ERANREEAIPLIEAAFQQRLE 164 (230)
Q Consensus 121 ql~KeKkEl~~KLk~~~KklDhl----------------ERA~R~EEiPLLek~~e~q~~ 164 (230)
+|.-+-.-|+.+++.++-||--. -|=++.-||-.|.+...+.+.
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777666655432 244556666666666555443
No 4
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=63.40 E-value=99 Score=33.06 Aligned_cols=77 Identities=22% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 038326 23 KEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQRILLI------QLEGAQ 96 (230)
Q Consensus 23 ~Eh~~il~Rk~iIE~RK~E~~E~~~~eke~eea~~r~~~~~~~~~~~aEq~RL~eE~~rRe~eR~~rE------~~~e~k 96 (230)
...+.+|+|+.--++|+ +..+.-..++++++.+++ ..... .+.|.++-..|.++-..+|++.+ .+.+..
T Consensus 217 ~~~qe~La~~qe~eE~q-kreeEE~~r~eeEEer~~-ee~E~---~~eEak~kkKekekek~er~KaeGklLTakQK~~~ 291 (1064)
T KOG1144|consen 217 RAMQEALAKRQEEEERQ-KREEEERLRREEEEERRR-EEEEA---QEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEA 291 (1064)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHHH
Confidence 46677788888777777 766666666666655555 22221 22333333444444445566666 344444
Q ss_pred HHHHHHHh
Q 038326 97 ALLDEEAE 104 (230)
Q Consensus 97 k~~~e~l~ 104 (230)
.++...++
T Consensus 292 a~aea~l~ 299 (1064)
T KOG1144|consen 292 ALAEAFLK 299 (1064)
T ss_pred HHHHHHHH
Confidence 44444343
No 5
>PTZ00121 MAEBL; Provisional
Probab=55.94 E-value=3.8e+02 Score=31.02 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhHH--HHHHhhhhhhchhHH
Q 038326 127 QEMDKKLRKLAKTLN--YLERANREEAIPLIE 156 (230)
Q Consensus 127 kEl~~KLk~~~KklD--hlERA~R~EEiPLLe 156 (230)
+--+.+|-..++|-+ -.|+|.|-+++-.++
T Consensus 1256 k~Eear~a~~A~r~aa~k~Ee~RrAee~~k~E 1287 (2084)
T PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAE 1287 (2084)
T ss_pred HHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHH
Confidence 333444444444443 234555555554443
No 6
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=50.85 E-value=3.1e+02 Score=28.56 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=22.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 038326 16 GLGEVVDKEHERLVARKSIIEKLKLEEHKRQLIEME 51 (230)
Q Consensus 16 ~~~~~~~~Eh~~il~Rk~iIE~RK~E~~E~~~~eke 51 (230)
+.......+...++.+-++-|.|+.-..+.....++
T Consensus 596 qdRks~srekr~~~sfdk~kE~Rr~Re~eer~RirE 631 (940)
T KOG4661|consen 596 QDRKSRSREKRRERSFDKRKEERRRREAEERQRIRE 631 (940)
T ss_pred hhhHHHHHHhhhhhhHHhhhhHHHhHHHHHHHHHHH
Confidence 456667778888888888777777333333333333
No 7
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=42.82 E-value=4.2e+02 Score=28.62 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 038326 70 AEQKRLA 76 (230)
Q Consensus 70 aEq~RL~ 76 (230)
+|.+|..
T Consensus 245 eEEer~~ 251 (1064)
T KOG1144|consen 245 EEEERRR 251 (1064)
T ss_pred HHHHHHH
Confidence 3333333
No 8
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=36.20 E-value=3.2e+02 Score=27.97 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=39.6
Q ss_pred HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038326 22 DKEHERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKR--LAAEFELRKNQRILLIQLEGAQALL 99 (230)
Q Consensus 22 ~~Eh~~il~Rk~iIE~RK~E~~E~~~~eke~eea~~r~~~~~~~~~~~aEq~R--L~eE~~rRe~eR~~rE~~~e~kk~~ 99 (230)
..|..-+..|..+++++- ...++....+++.+++.-+.+.... +.+++.| -++|.-+|+--|..= .+....+++
T Consensus 384 kaedema~kraallekqq-rraeear~rkqqleae~e~kreear--rkaeeer~~keee~arrefirqey-~rrkqlklm 459 (708)
T KOG3654|consen 384 KAEDEMAQKRAALLEKQQ-RRAEEARRRKQQLEAEKEQKREEAR--RKAEEERAPKEEEVARREFIRQEY-ERRKQLKLM 459 (708)
T ss_pred chhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HhhHhhhcchhhhhhHHHHHHHHH-HHHHHHHHH
Confidence 345556667777777776 6666666666666655552222222 3444444 333444443322222 333344566
Q ss_pred HHHHh
Q 038326 100 DEEAE 104 (230)
Q Consensus 100 ~e~l~ 104 (230)
++ ++
T Consensus 460 ed-~d 463 (708)
T KOG3654|consen 460 ED-LD 463 (708)
T ss_pred Hh-hc
Confidence 66 64
No 9
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=32.63 E-value=4.1e+02 Score=27.70 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhHHH
Q 038326 126 RQEMDKKLRKLAKTLNY 142 (230)
Q Consensus 126 KkEl~~KLk~~~KklDh 142 (230)
++-+..+...-++++||
T Consensus 736 r~a~~drY~sdf~R~D~ 752 (940)
T KOG4661|consen 736 RKAVLDRYSSDFKRLDY 752 (940)
T ss_pred hhhHhhhhhcccccccc
Confidence 55677788888888888
No 10
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=28.09 E-value=4.9e+02 Score=26.71 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038326 26 ERLVARKSIIEKLKLEEHKRQLIEMEWEEESRRMLRQQKKTAEEAEQKRLAAEFELRKNQRILLIQLEGAQ 96 (230)
Q Consensus 26 ~~il~Rk~iIE~RK~E~~E~~~~eke~eea~~r~~~~~~~~~~~aEq~RL~eE~~rRe~eR~~rE~~~e~k 96 (230)
..|..|+...++.+ ...++..+..+++....+ ...+.. ++.+..|+.++- -+.++.+.+...+..
T Consensus 210 eqi~~~~~~~e~kr-~Eaerk~~~~qEe~Rqk~-d~~~~~--~eqekiR~~eek--qeee~ke~e~~~~k~ 274 (591)
T KOG2412|consen 210 EQIRERKERSEEKR-EEAERKRRAHQEELRQKE-DEEAEL--QEQEKIRAEEEK--QEEERKEAEEQAEKE 274 (591)
T ss_pred HHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHH-HHHHHH--hHHHHHHHHHHH--HHHHHHHHHHHHHHH
No 11
>PRK11820 hypothetical protein; Provisional
Probab=23.03 E-value=6e+02 Score=23.43 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHhchhhhhhhhHHH
Q 038326 126 RQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLH-EIEQQQEVELSRERHDEDLKESIGFQEAKSVRAR 204 (230)
Q Consensus 126 KkEl~~KLk~~~KklDhlERA~R~EEiPLLek~~e~q~~~D~~~~-e~~~~~~ie~ak~ehe~~l~~K~RL~r~~~d~~~ 204 (230)
+.++..+|..+..-++.++ .-.|.+.+.|..+...-...+ ...-..++..--.=+........=|.|+.+....
T Consensus 154 ~~dl~~rl~~i~~~~~~i~-----~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEval~adK~DI~EEi~RL~sHl~~ 228 (288)
T PRK11820 154 KADLLQRLDAIEALVAKIE-----ALAPEILEEYRERLRERLEELLGELDENRLEQEVALLAQKADIAEELDRLKSHLKE 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 3444455555555555443 446777777766665555444 2334556666677777778888899999999999
Q ss_pred hHHHHhhhcccc
Q 038326 205 SKTTAQKTNSLG 216 (230)
Q Consensus 205 ~~~~~~~~~~~~ 216 (230)
|..++....+.|
T Consensus 229 f~~~L~~~~~vG 240 (288)
T PRK11820 229 FREILKKGGPVG 240 (288)
T ss_pred HHHHHhcCCCCC
Confidence 999998766555
No 12
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=22.81 E-value=5e+02 Score=22.44 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhc
Q 038326 121 QQLRERQEMDKKLRKLAKTLNYLERANREEAI 152 (230)
Q Consensus 121 ql~KeKkEl~~KLk~~~KklDhlERA~R~EEi 152 (230)
..++-+.|.+..|.... -..|||=+|.+||
T Consensus 122 eAek~r~ErE~~~~q~e--qERleRKKRiEEI 151 (171)
T PF05672_consen 122 EAEKQRKERERIMQQEE--QERLERKKRIEEI 151 (171)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 55566666666665553 3578888888887
No 13
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=20.50 E-value=2.1e+02 Score=22.48 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhchhhhhhhhHHHhHHHHhhh
Q 038326 165 EERVLHEIEQQQEVELSRERHDEDLKESIGFQEAKSVRARSKTTAQKT 212 (230)
Q Consensus 165 ~D~~~~e~~~~~~ie~ak~ehe~~l~~K~RL~r~~~d~~~~~~~~~~~ 212 (230)
..+-+|+.++..+..+ .++|+..+.+++-+..+-+|=..|++.|...
T Consensus 36 d~rsLye~LqenK~~K-q~efeE~~K~kn~~r~LDedE~eFLd~v~~~ 82 (102)
T PF10187_consen 36 DGRSLYERLQENKAAK-QEEFEEKHKLKNQFRGLDEDEIEFLDEVEEK 82 (102)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHHHHhcccccCCCCHHHHHHHHHHHHH
Confidence 3566899999888655 7899999999999999999999999988653
Done!