Query 038326
Match_columns 230
No_of_seqs 105 out of 168
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3etw_A Adhesin A; antiparallel 97.0 0.015 5.2E-07 46.1 12.8 35 120-154 78-112 (119)
2 3twe_A Alpha4H; unknown functi 45.3 27 0.00092 20.2 3.3 21 120-140 4-24 (27)
3 2v66_B Nuclear distribution pr 37.2 39 0.0013 26.1 4.2 35 120-154 45-79 (111)
4 3p8c_E Probable protein brick1 26.3 44 0.0015 24.2 2.6 26 123-148 44-69 (75)
5 3pp5_A BRK1, protein brick1; t 24.4 50 0.0017 23.7 2.6 25 121-145 42-66 (73)
6 3ljm_A Coil Ser L9C; de novo d 17.6 1.7E+02 0.0059 17.2 3.7 24 121-144 5-28 (31)
7 2f6m_B Vacuolar protein sortin 12.9 2E+02 0.0069 21.9 3.8 74 120-210 21-96 (109)
8 2akf_A Coronin-1A; coiled coil 12.5 2.6E+02 0.0087 16.8 3.8 24 122-145 4-27 (32)
9 2pnv_A Small conductance calci 12.2 3.1E+02 0.011 17.5 4.0 28 120-147 12-39 (43)
10 2p22_B Vacuolar protein sortin 12.1 2.2E+02 0.0074 22.1 3.8 42 121-164 31-72 (118)
No 1
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=97.04 E-value=0.015 Score=46.10 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhchh
Q 038326 120 DQQLRERQEMDKKLRKLAKTLNYLERANREEAIPL 154 (230)
Q Consensus 120 eql~KeKkEl~~KLk~~~KklDhlERA~R~EEiPL 154 (230)
.+..+.+++|+..|+.+.+.||+||++.++.+-.|
T Consensus 78 k~Y~~~~keLd~~ik~qekiIdnFE~ik~lr~gn~ 112 (119)
T 3etw_A 78 SKYEDALKKLEAEMEQQKAVISDFEKIQALRAGNL 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 59999999999999999999999999999988655
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=45.28 E-value=27 Score=20.16 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 038326 120 DQQLRERQEMDKKLRKLAKTL 140 (230)
Q Consensus 120 eql~KeKkEl~~KLk~~~Kkl 140 (230)
+++-|+-.+++++|+.+-|++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999886
No 3
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.20 E-value=39 Score=26.08 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhchh
Q 038326 120 DQQLRERQEMDKKLRKLAKTLNYLERANREEAIPL 154 (230)
Q Consensus 120 eql~KeKkEl~~KLk~~~KklDhlERA~R~EEiPL 154 (230)
.++...+..|..+++.++-.-|-|||+.|---..|
T Consensus 45 ~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 45 SQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 58888999999999999999999999999866544
No 4
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=26.35 E-value=44 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhh
Q 038326 123 LRERQEMDKKLRKLAKTLNYLERANR 148 (230)
Q Consensus 123 ~KeKkEl~~KLk~~~KklDhlERA~R 148 (230)
.----.++.||..++.+|+|+|=.+.
T Consensus 44 e~KLa~ln~KL~~LEr~L~iLEAkls 69 (75)
T 3p8c_E 44 RSRLATLNEKLTALERRIEYIEARVT 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456789999999999999986543
No 5
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=24.42 E-value=50 Score=23.73 Aligned_cols=25 Identities=24% Similarity=0.487 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 038326 121 QQLRERQEMDKKLRKLAKTLNYLER 145 (230)
Q Consensus 121 ql~KeKkEl~~KLk~~~KklDhlER 145 (230)
...----.++.||..++.+|+|||=
T Consensus 42 sce~KLa~ln~kL~~lE~~L~iLEA 66 (73)
T 3pp5_A 42 STRNKLSDLNEKLTILDRQVDYLEA 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456889999999999999984
No 6
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=17.59 E-value=1.7e+02 Score=17.24 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q 038326 121 QQLRERQEMDKKLRKLAKTLNYLE 144 (230)
Q Consensus 121 ql~KeKkEl~~KLk~~~KklDhlE 144 (230)
-++|.=.-++.+|+.++|++.-+|
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666678899999999998776
No 7
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=12.92 E-value=2e+02 Score=21.93 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--hchhhh
Q 038326 120 DQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLKE--SIGFQE 197 (230)
Q Consensus 120 eql~KeKkEl~~KLk~~~KklDhlERA~R~EEiPLLek~~e~q~~~D~~~~e~~~~~~ie~ak~ehe~~l~~--K~RL~r 197 (230)
+..+++.-|--.-|=.+-+.+||+|+||=+--|+ .++|...... .|.+ |..-+.. ..-+..
T Consensus 21 ~~~eRe~ye~LAelYSII~tle~LEkAyikD~It--~~eYt~~c~r-----------LL~Q----yKt~~~~~~~~~v~~ 83 (109)
T 2f6m_B 21 TSKDKEVIETLSEIYSIVITLDHVEKAYLKDSID--DTQYTNTVDK-----------LLKQ----FKVYLNSQNKEEINK 83 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHH-----------HHHH----HHHHHTCTTTTHHHH
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHH-----------HHHH----HHHHHhcccHHHHHH
Confidence 3556666666677778899999999999998885 3335544432 2222 2222221 012334
Q ss_pred hhhhHHHhHHHHh
Q 038326 198 AKSVRARSKTTAQ 210 (230)
Q Consensus 198 ~~~d~~~~~~~~~ 210 (230)
.+||...|.+.-.
T Consensus 84 ~~~~le~F~~~y~ 96 (109)
T 2f6m_B 84 HFQSIEAFADTYN 96 (109)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHhC
Confidence 5788888887543
No 8
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=12.52 E-value=2.6e+02 Score=16.75 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 038326 122 QLRERQEMDKKLRKLAKTLNYLER 145 (230)
Q Consensus 122 l~KeKkEl~~KLk~~~KklDhlER 145 (230)
|+.+-+-++.-.+.+.+++|-+|-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777788888888774
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=12.18 E-value=3.1e+02 Score=17.51 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 038326 120 DQQLRERQEMDKKLRKLAKTLNYLERAN 147 (230)
Q Consensus 120 eql~KeKkEl~~KLk~~~KklDhlERA~ 147 (230)
..++---.++++|+-.++.|+|-+-+-+
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667889999999999999886543
No 10
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=12.10 E-value=2.2e+02 Score=22.08 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhchhHHHHHHHHHH
Q 038326 121 QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLE 164 (230)
Q Consensus 121 ql~KeKkEl~~KLk~~~KklDhlERA~R~EEiPLLek~~e~q~~ 164 (230)
..+++.-|--.-|=.+-+.+||+|+||=+--|+ .++|.....
T Consensus 31 ~~eRe~ye~LAeLYSII~tle~LEKAyikD~It--~~eYt~~C~ 72 (118)
T 2p22_B 31 SKDKEVIETLSEIYSIVITLDHVEKAYLKDSID--DTQYTNTVD 72 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSC--HHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCC--HHHHHHHHH
Confidence 566777777777788899999999999998885 333554443
Done!