Query 038326
Match_columns 230
No_of_seqs 105 out of 168
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 16:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038326.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038326hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e52a_ a.2.9.1 (A:) C-termina 20.0 74 0.0054 19.8 4.4 40 120-159 13-52 (56)
2 d2f6mb1 a.2.17.2 (B:15-118) Va 11.2 2.4E+02 0.018 19.5 8.2 73 121-210 17-91 (104)
3 d1wi1a_ b.55.1.1 (A:) Calcium- 6.4 2.1E+02 0.015 18.4 3.4 30 199-228 95-124 (126)
4 d2gsva1 a.23.7.1 (A:3-69) Hypo 4.3 1.9E+02 0.013 18.5 1.8 17 133-149 47-63 (67)
5 d1pzqa_ a.34.3.1 (A:) Erythron 3.9 1.7E+02 0.012 18.2 1.2 11 137-147 11-21 (60)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 3.7 4.6E+02 0.034 15.6 3.6 26 121-146 8-36 (66)
7 d1wiia_ g.41.3.4 (A:) Hypothet 3.3 2.2E+02 0.016 19.1 1.5 23 194-216 63-85 (85)
8 d1l8ya_ a.21.1.1 (A:) Nucleola 3.1 3.9E+02 0.029 17.5 2.6 22 149-170 47-68 (84)
9 d2f05a1 a.59.1.1 (A:1-85) Sin3 3.0 5.3E+02 0.039 16.2 3.3 29 191-219 17-47 (85)
10 d1uuza_ d.233.1.1 (A:) Inhibit 2.4 1.6E+02 0.011 21.4 -0.2 31 200-230 14-45 (130)
No 1
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=20.00 E-value=74 Score=19.83 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhchhHHHHH
Q 038326 120 DQQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAF 159 (230)
Q Consensus 120 eql~KeKkEl~~KLk~~~KklDhlERA~R~EEiPLLek~~ 159 (230)
.++.+.-++|+..|...++.+||=+=|.=.-+|--|++.+
T Consensus 13 ~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 13 KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999977777777776665543
No 2
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.22 E-value=2.4e+02 Score=19.48 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--Hhchhhhh
Q 038326 121 QQLRERQEMDKKLRKLAKTLNYLERANREEAIPLIEAAFQQRLEEERVLHEIEQQQEVELSRERHDEDLK--ESIGFQEA 198 (230)
Q Consensus 121 ql~KeKkEl~~KLk~~~KklDhlERA~R~EEiPLLek~~e~q~~~D~~~~e~~~~~~ie~ak~ehe~~l~--~K~RL~r~ 198 (230)
-.++++-|--.-|=.+-..+||+|+||-+-=|+- ++|..-.. .+...|..-+. ...-++..
T Consensus 17 ~~eRe~yd~LAelysII~tLe~LEkAyikD~It~--~eYt~~c~---------------rLl~QyK~~~~~~~~~~v~~~ 79 (104)
T d2f6mb1 17 SKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDD--TQYTNTVD---------------KLLKQFKVYLNSQNKEEINKH 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCH--HHHHHHHH---------------HHHHHHHHHHTCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHH---------------HHHHHHHHHHHHhhhHHhhhc
Confidence 3456666666677788899999999999988853 34555443 23333433333 23446778
Q ss_pred hhhHHHhHHHHh
Q 038326 199 KSVRARSKTTAQ 210 (230)
Q Consensus 199 ~~d~~~~~~~~~ 210 (230)
++|...|..+-.
T Consensus 80 f~~le~F~~~y~ 91 (104)
T d2f6mb1 80 FQSIEAFADTYN 91 (104)
T ss_dssp HHHHHHHHHHTT
T ss_pred cCCHHHHHHHHC
Confidence 899999987643
No 3
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.44 E-value=2.1e+02 Score=18.41 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=19.3
Q ss_pred hhhHHHhHHHHhhhcccccCCCCCCCCCCC
Q 038326 199 KSVRARSKTTAQKTNSLGEAGSEPGTAAPS 228 (230)
Q Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (230)
.+|+..|+..|...-.-.-..+.|..+.|+
T Consensus 95 ~~e~~~Wv~al~~a~~~~~~~~~~~~~~p~ 124 (126)
T d1wi1a_ 95 EQDRILWVQAMYRATGQSHKPVPPTQSGPS 124 (126)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 458889999998765444444455555554
No 4
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=4.35 E-value=1.9e+02 Score=18.49 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=13.2
Q ss_pred HHHHhhhHHHHHHhhhh
Q 038326 133 LRKLAKTLNYLERANRE 149 (230)
Q Consensus 133 Lk~~~KklDhlERA~R~ 149 (230)
-..+-|||-||+-||-+
T Consensus 47 Na~vlkRiqHLdEAY~K 63 (67)
T d2gsva1 47 NAVVLKRIQHLDEAYNK 63 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34677899999988854
No 5
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=3.86 E-value=1.7e+02 Score=18.21 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=7.7
Q ss_pred hhhHHHHHHhh
Q 038326 137 AKTLNYLERAN 147 (230)
Q Consensus 137 ~KklDhlERA~ 147 (230)
.-++|-||||+
T Consensus 11 g~rld~le~al 21 (60)
T d1pzqa_ 11 GDRLDELEKAL 21 (60)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 34678888875
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=3.67 E-value=4.6e+02 Score=15.58 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhH---HHHHHh
Q 038326 121 QQLRERQEMDKKLRKLAKTL---NYLERA 146 (230)
Q Consensus 121 ql~KeKkEl~~KLk~~~Kkl---DhlERA 146 (230)
.|.|+...++.-+..+.++| +|+++|
T Consensus 8 RL~K~l~kl~~~i~~~~~kL~N~~F~~kA 36 (66)
T d1ivsa1 8 RQEKRLKELLALAERSQRKLASPGFREKA 36 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHCChHHHHhC
Confidence 55666666666666666666 466666
No 7
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.33 E-value=2.2e+02 Score=19.05 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=19.2
Q ss_pred hhhhhhhhHHHhHHHHhhhcccc
Q 038326 194 GFQEAKSVRARSKTTAQKTNSLG 216 (230)
Q Consensus 194 RL~r~~~d~~~~~~~~~~~~~~~ 216 (230)
-|+.-.|.|-.|++.....|+-|
T Consensus 63 ~L~epiDVYs~WiDace~~n~~g 85 (85)
T d1wiia_ 63 YLSEPVDVYSDWIDACESGPSSG 85 (85)
T ss_dssp SSCCTTHHHHHHHHHHHHCCCCC
T ss_pred ccCccHhHHHHHHHHHHHhccCC
Confidence 56777889999999998888765
No 8
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.12 E-value=3.9e+02 Score=17.49 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=15.1
Q ss_pred hhhchhHHHHHHHHHHHHHHHH
Q 038326 149 EEAIPLIEAAFQQRLEEERVLH 170 (230)
Q Consensus 149 ~EEiPLLek~~e~q~~~D~~~~ 170 (230)
+|-||.|.+..+.|..=.++++
T Consensus 47 kEki~wikkaaedqkryerel~ 68 (84)
T d1l8ya_ 47 KEKLMWIKKAAEDQKRYERELS 68 (84)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 4679999998877765444443
No 9
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.95 E-value=5.3e+02 Score=16.19 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=16.5
Q ss_pred HhchhhhhhhhHHHhHHHHhh--hcccccCC
Q 038326 191 ESIGFQEAKSVRARSKTTAQK--TNSLGEAG 219 (230)
Q Consensus 191 ~K~RL~r~~~d~~~~~~~~~~--~~~~~~~~ 219 (230)
.|.||..=-+.|..|+.++.. .+..+-.|
T Consensus 17 VK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~ 47 (85)
T d2f05a1 17 IKTRFLDHPEIYRSFLEILHTYQKEQLHTKG 47 (85)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhhccccc
Confidence 455665444567778877773 33344444
No 10
>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.39 E-value=1.6e+02 Score=21.39 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhHHHhHHHHhhhcccccCCCCC-CCCCCCCC
Q 038326 200 SVRARSKTTAQKTNSLGEAGSEP-GTAAPSQN 230 (230)
Q Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 230 (230)
..++.|..+++....|-.--+.. ||++|+++
T Consensus 14 ~yr~awq~mvkg~~~LP~WV~~g~GtssP~~~ 45 (130)
T d1uuza_ 14 GYKATWHAMFKGESDVPKWVSDASGPSSPSTS 45 (130)
T ss_dssp HHHHHHHHHTSSCCSCCHHHHTTCSCBCCCEE
T ss_pred HHHHHHHHHHhccccCcHHHHhCCCCCCCcee
Done!