Query 038327
Match_columns 91
No_of_seqs 138 out of 1073
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 99.9 2.9E-26 9.8E-31 144.9 -0.5 54 1-54 7-74 (77)
2 3p57_A Myocyte-specific enhanc 99.9 1.3E-25 4.4E-30 145.6 -0.7 54 1-54 7-74 (90)
3 1mnm_A Protein (MCM1 transcrip 99.9 7E-24 2.4E-28 139.7 -2.4 50 1-50 23-86 (100)
4 1hbx_A SRF, serum response fac 99.8 1.1E-23 3.7E-28 137.0 -4.5 49 1-49 17-79 (92)
5 1k6o_B SRF, serum response fac 99.8 3.4E-23 1.2E-27 137.0 -4.4 48 1-48 16-77 (103)
6 2yy0_A C-MYC-binding protein; 91.8 0.24 8.4E-06 28.3 3.9 38 42-79 4-43 (53)
7 2wuj_A Septum site-determining 84.1 0.75 2.5E-05 26.4 2.5 34 39-77 23-56 (57)
8 1l8d_A DNA double-strand break 80.1 1.3 4.4E-05 27.7 2.7 57 21-77 42-100 (112)
9 1deb_A APC protein, adenomatou 79.0 3.2 0.00011 23.8 3.9 25 56-80 4-28 (54)
10 3twe_A Alpha4H; unknown functi 71.3 7.5 0.00026 19.0 3.7 23 57-79 3-25 (27)
11 2oa5_A Hypothetical protein BQ 53.1 11 0.00037 24.6 2.8 26 55-80 8-33 (110)
12 1a93_B MAX protein, coiled coi 51.0 25 0.00086 18.3 4.2 24 56-79 8-31 (34)
13 2rpa_A Katanin P60 ATPase-cont 50.2 28 0.00094 21.1 4.2 53 22-74 16-75 (78)
14 1nm8_A Carnitine O-acetyltrans 46.0 9.4 0.00032 30.9 2.0 42 39-80 20-68 (616)
15 3gpv_A Transcriptional regulat 44.2 54 0.0018 21.3 5.3 12 24-35 18-29 (148)
16 1q06_A Transcriptional regulat 44.2 45 0.0015 21.3 4.8 41 39-79 61-110 (135)
17 1go4_E MAD1 (mitotic arrest de 43.0 15 0.00052 23.4 2.3 26 55-80 68-93 (100)
18 1t6f_A Geminin; coiled-coil, c 41.2 34 0.0012 18.1 3.1 20 57-76 16-35 (37)
19 3gp4_A Transcriptional regulat 40.3 69 0.0024 20.7 5.3 22 57-78 90-111 (142)
20 2dgc_A Protein (GCN4); basic d 36.4 61 0.0021 18.5 4.2 25 55-79 30-54 (63)
21 2ve7_C Kinetochore protein NUF 36.1 29 0.00099 25.0 3.1 20 18-37 90-110 (250)
22 1xl7_A COT, peroxisomal carnit 36.0 20 0.00068 29.0 2.4 43 38-80 25-72 (612)
23 2l5g_B Putative uncharacterize 34.6 57 0.002 17.7 4.1 26 55-80 9-34 (42)
24 1zke_A Hypothetical protein HP 32.2 70 0.0024 19.6 4.0 26 55-80 52-77 (83)
25 2wt7_A Proto-oncogene protein 31.6 73 0.0025 17.9 4.2 24 56-79 24-47 (63)
26 3s9g_A Protein hexim1; cyclin 29.4 87 0.003 20.0 4.2 26 55-80 65-90 (104)
27 2zvf_A Alanyl-tRNA synthetase; 29.3 92 0.0032 20.1 4.6 25 55-79 32-56 (171)
28 1t1u_A Choline O-acetyltransfe 29.0 23 0.00079 28.8 1.7 42 38-79 27-75 (639)
29 4dzo_A Mitotic spindle assembl 28.8 69 0.0023 20.7 3.8 25 55-79 4-28 (123)
30 1nkp_B MAX protein, MYC proto- 28.5 92 0.0032 18.2 4.2 24 56-79 55-78 (83)
31 2yrk_A Zinc finger homeobox pr 27.7 19 0.00063 20.8 0.7 16 24-39 11-26 (55)
32 1zme_C Proline utilization tra 26.9 83 0.0029 17.2 3.9 25 55-79 44-68 (70)
33 2l5g_A GPS2 protein, G protein 26.9 77 0.0026 16.8 3.6 22 57-78 10-31 (38)
34 1m1j_C Fibrinogen gamma chain; 25.4 1E+02 0.0035 23.8 4.8 45 36-80 15-66 (409)
35 2ke4_A CDC42-interacting prote 25.3 94 0.0032 19.3 3.8 24 56-79 23-46 (98)
36 2zvv_Y Cyclin-dependent kinase 24.9 17 0.00058 17.8 0.2 12 8-19 15-26 (26)
37 1hlo_A Protein (transcription 24.8 64 0.0022 18.9 2.8 23 55-77 57-79 (80)
38 1fxk_A Prefoldin; archaeal pro 23.2 1.3E+02 0.0043 17.9 4.2 32 39-72 1-32 (107)
39 2jee_A YIIU; FTSZ, septum, coi 23.2 1.3E+02 0.0045 18.3 4.1 24 55-78 20-43 (81)
40 1dh3_A Transcription factor CR 23.0 1.1E+02 0.0036 17.0 4.2 25 55-79 22-46 (55)
41 2deb_A CPT II, carnitine O-pal 22.9 42 0.0014 27.4 2.2 41 39-79 50-95 (653)
42 1ci6_A Transcription factor AT 22.2 1.2E+02 0.004 17.1 4.2 24 56-79 24-47 (63)
43 2aze_B Transcription factor E2 21.8 1.3E+02 0.0045 18.8 4.0 24 56-79 7-30 (106)
44 2wg5_A General control protein 21.5 1.1E+02 0.0039 19.0 3.7 23 57-79 9-31 (109)
45 3w03_C DNA repair protein XRCC 21.5 1.1E+02 0.0038 21.2 3.9 25 55-79 152-176 (184)
46 2xdj_A Uncharacterized protein 20.1 1.6E+02 0.0053 17.8 4.2 25 55-79 27-51 (83)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.91 E-value=2.9e-26 Score=144.86 Aligned_cols=54 Identities=30% Similarity=0.415 Sum_probs=49.2
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhhhCCC--------------CCCCcHHHHHHHHhCCChH
Q 038327 1 MKRIENEDDRLITFSKRKSRTYNKASELVTLTGAE--------------IGHPSIEAVANRFLGQTRR 54 (91)
Q Consensus 1 ik~I~n~~~R~vTfsKRr~GL~KKA~ELs~Lc~~~--------------f~~ps~~~vl~r~~~~~~~ 54 (91)
|++|+|+++|+|||+|||+||||||+||||||||+ |++|+++.||+||+..+++
T Consensus 7 ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred eEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 78999999999999999999999999999999999 7889999999999876654
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.90 E-value=1.3e-25 Score=145.57 Aligned_cols=54 Identities=30% Similarity=0.415 Sum_probs=51.3
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhhhCCC--------------CCCCcHHHHHHHHhCCChH
Q 038327 1 MKRIENEDDRLITFSKRKSRTYNKASELVTLTGAE--------------IGHPSIEAVANRFLGQTRR 54 (91)
Q Consensus 1 ik~I~n~~~R~vTfsKRr~GL~KKA~ELs~Lc~~~--------------f~~ps~~~vl~r~~~~~~~ 54 (91)
|++|+|+.+|+|||+|||+||||||+||||||||+ |+||+++.||+||+..+++
T Consensus 7 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~ 74 (90)
T 3p57_A 7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (90)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred eEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence 78999999999999999999999999999999999 8889999999999987665
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.86 E-value=7e-24 Score=139.70 Aligned_cols=50 Identities=42% Similarity=0.582 Sum_probs=47.6
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhhhCCC--------------CCCCcHHHHHHHHhC
Q 038327 1 MKRIENEDDRLITFSKRKSRTYNKASELVTLTGAE--------------IGHPSIEAVANRFLG 50 (91)
Q Consensus 1 ik~I~n~~~R~vTfsKRr~GL~KKA~ELs~Lc~~~--------------f~~ps~~~vl~r~~~ 50 (91)
|++|+|+.+|+|||+|||+||||||+||||||||+ |++|+++.||++|.+
T Consensus 23 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred eEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 78999999999999999999999999999999999 889999999998864
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.84 E-value=1.1e-23 Score=137.00 Aligned_cols=49 Identities=37% Similarity=0.453 Sum_probs=46.3
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhhhCCC--------------CCCCcHHHHHHHHh
Q 038327 1 MKRIENEDDRLITFSKRKSRTYNKASELVTLTGAE--------------IGHPSIEAVANRFL 49 (91)
Q Consensus 1 ik~I~n~~~R~vTfsKRr~GL~KKA~ELs~Lc~~~--------------f~~ps~~~vl~r~~ 49 (91)
|++|+|+.+|+|||+|||.||||||+||||||||+ |++|+++.+|++|.
T Consensus 17 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 17 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred EEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 78999999999999999999999999999999999 88999999998764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.83 E-value=3.4e-23 Score=137.03 Aligned_cols=48 Identities=38% Similarity=0.471 Sum_probs=45.5
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhhhCCC--------------CCCCcHHHHHHHH
Q 038327 1 MKRIENEDDRLITFSKRKSRTYNKASELVTLTGAE--------------IGHPSIEAVANRF 48 (91)
Q Consensus 1 ik~I~n~~~R~vTfsKRr~GL~KKA~ELs~Lc~~~--------------f~~ps~~~vl~r~ 48 (91)
|++|+|+.+|+|||+|||.||||||+||||||||+ |++|+++.||+++
T Consensus 16 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 16 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred EEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 78999999999999999999999999999999999 8899999998864
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.80 E-value=0.24 Score=28.35 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=21.8
Q ss_pred HHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 42 EAVANRFLG--QTRRQMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 42 ~~vl~r~~~--~~~~~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
-+.|.+|++ .|....++.|+.+++.++.+.+.|.....
T Consensus 4 lefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 4 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888 66668888888888888888887776654
No 7
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=84.06 E-value=0.75 Score=26.41 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=19.5
Q ss_pred CcHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 038327 39 PSIEAVANRFLGQTRRQMTTLLLVEAQRQKERGNFLKQM 77 (91)
Q Consensus 39 ps~~~vl~r~~~~~~~~~~~~l~~el~~~k~~~~~l~~~ 77 (91)
-.|+..|+... ..|..+..+...++++++.|++.
T Consensus 23 ~EVD~FLd~v~-----~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 23 DEVNEFLAQVR-----KDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666666553 46667777777777777666543
No 8
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=80.11 E-value=1.3 Score=27.72 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=27.2
Q ss_pred hhhhhhhhhhhhCCCCCCCcHHHHHHHHhCCChH--HHHHHHHHHHHHHHHHHHHHHHH
Q 038327 21 TYNKASELVTLTGAEIGHPSIEAVANRFLGQTRR--QMTTLLLVEAQRQKERGNFLKQM 77 (91)
Q Consensus 21 L~KKA~ELs~Lc~~~f~~ps~~~vl~r~~~~~~~--~~~~~l~~el~~~k~~~~~l~~~ 77 (91)
++.++.+.|-+||..........+++.+...-.. ..+..+..++..++.+.+.|...
T Consensus 42 ~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 42 ELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777654322234566665421111 33444445555554444444444
No 9
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=79.01 E-value=3.2 Score=23.80 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 038327 56 MTTLLLVEAQRQKERGNFLKQMTKG 80 (91)
Q Consensus 56 ~~~~l~~el~~~k~~~~~l~~~~~~ 80 (91)
.|++|..|++.++++|.-|++++..
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4889999999999999999998873
No 10
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=71.31 E-value=7.5 Score=19.02 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038327 57 TTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 57 ~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
.++|..+++-+++++.+|+..++
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888776
No 11
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=53.14 E-value=11 Score=24.60 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTKG 80 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~~ 80 (91)
..+++|..+|.+|+-+|..|.+.++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999874
No 12
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.02 E-value=25 Score=18.30 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 56 MTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 56 ~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
.....++.++.+|++|..|+..++
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 456778999999999999998876
No 13
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=50.24 E-value=28 Score=21.06 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhCCCCCC---CcHHHHHHHHhCCC-hH---HHHHHHHHHHHHHHHHHHHH
Q 038327 22 YNKASELVTLTGAEIGH---PSIEAVANRFLGQT-RR---QMTTLLLVEAQRQKERGNFL 74 (91)
Q Consensus 22 ~KKA~ELs~Lc~~~f~~---ps~~~vl~r~~~~~-~~---~~~~~l~~el~~~k~~~~~l 74 (91)
+|+|.|.+.+++=+-+- -.+..-|++|...- ++ .+-.+++.+|..+-+....+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~i 75 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKDI 75 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 58999999999765111 33566677886543 33 45567777777665554443
No 14
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=45.99 E-value=9.4 Score=30.94 Aligned_cols=42 Identities=10% Similarity=0.099 Sum_probs=30.7
Q ss_pred CcHHHHHHHHhCCChH----HHHHHHHHHHHHHHH---HHHHHHHHHhc
Q 038327 39 PSIEAVANRFLGQTRR----QMTTLLLVEAQRQKE---RGNFLKQMTKG 80 (91)
Q Consensus 39 ps~~~vl~r~~~~~~~----~~~~~l~~el~~~k~---~~~~l~~~~~~ 80 (91)
|++++.++||+....| .+|.++..-++.-.+ ....|++.+..
T Consensus 20 P~L~~Tl~rYL~sv~Pl~~~ee~~~t~~~v~eF~~~gg~G~~Lq~~L~~ 68 (616)
T 1nm8_A 20 PPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLER 68 (616)
T ss_dssp CCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 7899999999875444 667777666666654 67778777664
No 15
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=44.19 E-value=54 Score=21.28 Aligned_cols=12 Identities=0% Similarity=0.099 Sum_probs=8.5
Q ss_pred hhhhhhhhhCCC
Q 038327 24 KASELVTLTGAE 35 (91)
Q Consensus 24 KA~ELs~Lc~~~ 35 (91)
+.+|+|-+||+.
T Consensus 18 ~I~evA~~~gvs 29 (148)
T 3gpv_A 18 TIGQVAKMQHLT 29 (148)
T ss_dssp CHHHHHHHTTCC
T ss_pred eHHHHHHHHCcC
Confidence 466777777777
No 16
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=44.19 E-value=45 Score=21.29 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=20.5
Q ss_pred CcHHHHHHHHhCCChH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 39 PSIEAVANRFLGQTRR---------QMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 39 ps~~~vl~r~~~~~~~---------~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
..+..+++.+.....+ .+...+.+++..++...+.|+..+.
T Consensus 61 ~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 61 EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655443221 3344555555555555555555544
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.01 E-value=15 Score=23.41 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTKG 80 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~~ 80 (91)
.-+.+..+++++++.+++.|+..++.
T Consensus 68 ~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 68 VARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888887763
No 18
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.15 E-value=34 Score=18.07 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038327 57 TTLLLVEAQRQKERGNFLKQ 76 (91)
Q Consensus 57 ~~~l~~el~~~k~~~~~l~~ 76 (91)
++.-.+++..++++|+.|++
T Consensus 16 ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHh
Confidence 44556677777777776653
No 19
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=40.32 E-value=69 Score=20.67 Aligned_cols=22 Identities=14% Similarity=-0.109 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038327 57 TTLLLVEAQRQKERGNFLKQMT 78 (91)
Q Consensus 57 ~~~l~~el~~~k~~~~~l~~~~ 78 (91)
...+.+++..++...+.|...+
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 20
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.38 E-value=61 Score=18.50 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
.+...|..+++.++.+|..|...+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888877654
No 21
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=36.12 E-value=29 Score=24.98 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=16.1
Q ss_pred cchhhhhhhhhhhhhCCC-CC
Q 038327 18 KSRTYNKASELVTLTGAE-IG 37 (91)
Q Consensus 18 r~GL~KKA~ELs~Lc~~~-f~ 37 (91)
-.+|++....|.-.||+. |+
T Consensus 90 ~l~~~r~l~~~l~~~gv~DFt 110 (250)
T 2ve7_C 90 FSNLVTHLDSFLPICRVNDFE 110 (250)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCCc
Confidence 345889999999999986 54
No 22
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=36.04 E-value=20 Score=28.96 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHhCCChH----HHHHHHHHHHHHHH-HHHHHHHHHHhc
Q 038327 38 HPSIEAVANRFLGQTRR----QMTTLLLVEAQRQK-ERGNFLKQMTKG 80 (91)
Q Consensus 38 ~ps~~~vl~r~~~~~~~----~~~~~l~~el~~~k-~~~~~l~~~~~~ 80 (91)
=|++++.++||+....| .++.++..-++.-. ....+|++.+..
T Consensus 25 vP~L~~Tl~rYL~s~~Pl~~~ee~~~t~~~v~~F~~g~G~~Lq~~L~~ 72 (612)
T 1xl7_A 25 VPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLE 72 (612)
T ss_dssp CCCHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 38899999999975555 55555544443332 566777777664
No 23
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.55 E-value=57 Score=17.67 Aligned_cols=26 Identities=15% Similarity=-0.018 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTKG 80 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~~ 80 (91)
++++++-.|+++-+++..+|+..+++
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777776666553
No 24
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=32.16 E-value=70 Score=19.63 Aligned_cols=26 Identities=38% Similarity=0.372 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTKG 80 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~~ 80 (91)
.-+.++-++++++|+..+.|....++
T Consensus 52 ~~~~QideeV~~LKe~IdaLNK~Kke 77 (83)
T 1zke_A 52 AFFTQLSEEVERLKELINALNKIKKG 77 (83)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999887764
No 25
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.57 E-value=73 Score=17.95 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 56 MTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 56 ~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
....|+.+++.+..+|..|...+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777776666666554
No 26
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.39 E-value=87 Score=20.05 Aligned_cols=26 Identities=15% Similarity=-0.002 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTKG 80 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~~ 80 (91)
.++..|..++++++.+|..|.++...
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678888899999999988888764
No 27
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.31 E-value=92 Score=20.11 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
..+..|++++..++++++.|+.++.
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776644
No 28
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=28.96 E-value=23 Score=28.78 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=27.7
Q ss_pred CCcHHHHHHHHhCCChH----HHHHHHHHHHHHHHH---HHHHHHHHHh
Q 038327 38 HPSIEAVANRFLGQTRR----QMTTLLLVEAQRQKE---RGNFLKQMTK 79 (91)
Q Consensus 38 ~ps~~~vl~r~~~~~~~----~~~~~l~~el~~~k~---~~~~l~~~~~ 79 (91)
=|++++.++||+....| .+|.++..-++.-.+ ...+|++.+.
T Consensus 27 vP~L~~Tl~rYL~s~~Pll~~ee~~~t~~~v~~F~~~~G~G~~Lq~~L~ 75 (639)
T 1t1u_A 27 VPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLL 75 (639)
T ss_dssp CCCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSTTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 38899999999975554 566666555544443 3366666655
No 29
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=28.81 E-value=69 Score=20.70 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
.++.+|+++++..++++..|.+.-.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~ 28 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQ 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999987643
No 30
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.50 E-value=92 Score=18.17 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 56 MTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 56 ~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
+...|..+++.++.++..|+..+.
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777776665
No 31
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=27.72 E-value=19 Score=20.76 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=12.2
Q ss_pred hhhhhhhhhCCCCCCC
Q 038327 24 KASELVTLTGAEIGHP 39 (91)
Q Consensus 24 KA~ELs~Lc~~~f~~p 39 (91)
+..+=|.|||+.|++-
T Consensus 11 ~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 11 GTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCSCCTTTTCCCCSS
T ss_pred CCCccccccCcccccc
Confidence 3456689999999874
No 32
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.93 E-value=83 Score=17.15 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
..+..|.+++..++..+..|+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467888899999888888877665
No 33
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.90 E-value=77 Score=16.77 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038327 57 TTLLLVEAQRQKERGNFLKQMT 78 (91)
Q Consensus 57 ~~~l~~el~~~k~~~~~l~~~~ 78 (91)
+....+++.+++.+++.|+++.
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776653
No 34
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.38 E-value=1e+02 Score=23.82 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=32.1
Q ss_pred CCC--Cc---HHHHHHHHhCCChH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038327 36 IGH--PS---IEAVANRFLGQTRR--QMTTLLLVEAQRQKERGNFLKQMTKG 80 (91)
Q Consensus 36 f~~--ps---~~~vl~r~~~~~~~--~~~~~l~~el~~~k~~~~~l~~~~~~ 80 (91)
||+ |. +...|.+|....+. .+++.+..+++........|.+.++.
T Consensus 15 ~G~~CPT~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 15 FGSYCPTTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp GCCEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 43 88899999875444 66777777887777777777766653
No 35
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.28 E-value=94 Score=19.32 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 56 MTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 56 ~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
.+..|+.+++++....+.|..+..
T Consensus 23 Ki~el~~ei~ke~~~regl~Km~~ 46 (98)
T 2ke4_A 23 QLEERSRELQKEVDQREALKKMKD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544
No 36
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=24.93 E-value=17 Score=17.76 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=8.5
Q ss_pred CCcccccccccc
Q 038327 8 DDRLITFSKRKS 19 (91)
Q Consensus 8 ~~R~vTfsKRr~ 19 (91)
+.|.+-|+||+.
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 457778888863
No 37
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.76 E-value=64 Score=18.85 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQM 77 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~ 77 (91)
.-+..|+.+++.++.+++.|++.
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34578888888888888887654
No 38
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.18 E-value=1.3e+02 Score=17.91 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=17.1
Q ss_pred CcHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Q 038327 39 PSIEAVANRFLGQTRRQMTTLLLVEAQRQKERGN 72 (91)
Q Consensus 39 ps~~~vl~r~~~~~~~~~~~~l~~el~~~k~~~~ 72 (91)
|.++..+..|.... .++..+..++..++.+..
T Consensus 1 ~~~Q~~i~~f~~lq--~~~~~l~~q~~~l~~~~~ 32 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQ--QQAQAISVQKQTVEMQIN 32 (107)
T ss_dssp CCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 66777888886432 334444444444443333
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.16 E-value=1.3e+02 Score=18.28 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMT 78 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~ 78 (91)
..+.-|+-+++.+|.+|..|.+..
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777755543
No 40
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.01 E-value=1.1e+02 Score=16.96 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
..+..|..++..+..+|..|...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888877765
No 41
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=22.88 E-value=42 Score=27.42 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=26.8
Q ss_pred CcHHHHHHHHhCCChH----HHHHHHHHHHHHHH-HHHHHHHHHHh
Q 038327 39 PSIEAVANRFLGQTRR----QMTTLLLVEAQRQK-ERGNFLKQMTK 79 (91)
Q Consensus 39 ps~~~vl~r~~~~~~~----~~~~~l~~el~~~k-~~~~~l~~~~~ 79 (91)
|++++.++||+....| .++.++..-++.-. .....|++.+.
T Consensus 50 P~L~~Tl~rYL~s~~Pll~~ee~~~t~~~v~~F~~~~G~~Lq~~L~ 95 (653)
T 2deb_A 50 PKLEDTMKRYLNAQKPLLDDSQFRRTEALCKNFETGVGKELHAHLL 95 (653)
T ss_dssp CCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7899999999875444 55655544443332 45577777765
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.21 E-value=1.2e+02 Score=17.15 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 56 MTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 56 ~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
....|..+++.++.+|..|...+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555543
No 43
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.78 E-value=1.3e+02 Score=18.81 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 56 MTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 56 ~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
+...|+.|++.+..+...|.+.++
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~ 30 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMN 30 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766666666654
No 44
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.49 E-value=1.1e+02 Score=18.98 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038327 57 TTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 57 ~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
..+|++++..++++...++++++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~ 31 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVA 31 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777665
No 45
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.48 E-value=1.1e+02 Score=21.25 Aligned_cols=25 Identities=4% Similarity=-0.084 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
..+..|+.++..+.++|+.|+.+..
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888877643
No 46
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.06 E-value=1.6e+02 Score=17.78 Aligned_cols=25 Identities=4% Similarity=-0.206 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 038327 55 QMTTLLLVEAQRQKERGNFLKQMTK 79 (91)
Q Consensus 55 ~~~~~l~~el~~~k~~~~~l~~~~~ 79 (91)
.++..|+.++..++-.++.+...+.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5566677777666666666555543
Done!