BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038329
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 23/183 (12%)
Query: 24 DQDALLTLKPHIAHEPGNLLAKNWTSNTSVCN--WMGVTCDV--HSHRVTVLNISHLNLT 79
D+ ALL +K + + P L +W T CN W+GV CD ++RV L++S LNL
Sbjct: 7 DKQALLQIKKDLGN-PTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 80 GS--IPSQLGNLSSLQALDLS-FNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFN 136
IPS L NL L L + N G IP +I L L L ++ +SG+ P +
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 137 MSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKL-EKLYLGH 183
+ +L DF N LSG P +I N++ GA+ G+ +KL + +
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 184 NRL 186
NRL
Sbjct: 184 NRL 186
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 85 QLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144
++G +L LDL NR GT+P + L L L++S N L G P N+ V+
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297
Query: 145 FRKNR 149
+ N+
Sbjct: 298 YANNK 302
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 8 PSFVDTVAVNTITITTDQDALL-TLKPHIAHEPGNLLAKNWTSNTSVCNWMGVTCDVHSH 66
P F+ + +T+ +AL TL P I+ P NL+ + N + + + S
Sbjct: 118 PDFLSQIKT-LVTLDFSYNALSGTLPPSISSLP-NLVGITFDGN-RISGAIPDSYGSFSK 174
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-----------SLNS 115
T + IS LTG IP NL+ L +DLS N G S +F + NS
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNS 232
Query: 116 LQI-------------LDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFP 155
L LDL +N++ G+ P + + L + N L GE P
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLS 122
S + L++ + + G++P L L L +L++SFN G IP +LQ D+S
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVS 296
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 61 CDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120
C + + L + + TG IP L N S L +L LSFN +GTIPSS+ SL+ L+ L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQK 168
L N L G P + + +L+ N L+GE P+ + N+L G + K
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 169 GIGNLTKLEKLYLGHN 184
IG L L L L +N
Sbjct: 506 WIGRLENLAILKLSNN 521
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+ L++S+ L+G IP ++G++ L L+L N +G+IP + L L ILDLS N+L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 128 GSFPSSIFNMSSLKVADFRKNRLSGEFP 155
G P ++ ++ L D N LSG P
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 70 VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGS 129
+LN+ H +++GSIP ++G+L L LDLS N+ +G IP ++ +L L +DLS+N LSG
Sbjct: 657 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 716
Query: 130 FPSSIFNMSSLKVADFRKNR-LSG-EFPANIPNKLPGAMQKGIGNLTKLEKLYL 181
P + + A F N L G P P+ G + +LE LY
Sbjct: 717 IP-EMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHGRRLENLYF 769
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%)
Query: 77 NLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFN 136
+LTG IPS L N ++L + LS NR G IP I L +L IL LS+N SG+ P+ + +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 137 MSSLKVADFRKNRLSGEFPA 156
SL D N +G PA
Sbjct: 534 CRSLIWLDLNTNLFNGTIPA 553
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 71 LNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSF 130
+++S+ LTG IP +G L +L L LS N F+G IP+ + SL LDL+ N +G+
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 131 PSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKL 179
P+++F S A+F ++G+ I N G GNL + + +
Sbjct: 552 PAAMFKQSGKIAANF----IAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 78 LTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNM 137
L G IP +L + +L+ L L FN G IPS + + +L + LS+N+L+G P I +
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 138 SSLKVADFRKNRLSGEFPANI 158
+L + N SG PA +
Sbjct: 511 ENLAILKLSNNSFSGNIPAEL 531
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%)
Query: 72 NISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFP 131
NI+ G N S+ LD+S+N +G IP I S+ L IL+L N +SGS P
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 132 SSIFNMSSLKVADFRKNRLSGEFP 155
+ ++ L + D N+L G P
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIP 694
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 59 VTCDVHSHRVT---VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNS 115
++ DV R L++S N + IP LG+ S+LQ LD+S N+ +G +I +
Sbjct: 187 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 116 LQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGA 165
L++L++S NQ G P + SL+ +N+ +GE IP+ L GA
Sbjct: 246 LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE----IPDFLSGA 289
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 53 VCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIP-SSIF 111
+ +++ CD +T L++S + G++P G+ S L++L LS N F+G +P ++
Sbjct: 282 IPDFLSGACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 112 SLNSLQILDLSDNQLSGSFPSSIFNMS-SLKVADFRKNRLSGEFPANIP----------- 159
+ L++LDLS N+ SG P S+ N+S SL D N SG N+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 160 ---NKLPGAMQKGIGNLTKLEKLYLGHNRL 186
N G + + N ++L L+L N L
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 68 VTVLNISHLNLTGSIPSQL-GNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
+ L+++ TG IP L G +L LDLS N F G +P S + L+ L LS N
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 127 SGSFP-SSIFNMSSLKVADFRKNRLSGEFPANIPN 160
SG P ++ M LKV D N SGE P ++ N
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 47/169 (27%)
Query: 56 WMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNS 115
W+G + +L +S+ + +G+IP++LG+ SL LDL+ N FNGTIP+++F
Sbjct: 506 WIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK--- 557
Query: 116 LQILDLSDNQLSGSFPSSIFNMSSLK-------------VADFRKNRLSGEFPANIP--- 159
Q ++ N ++G I N K + + NRLS P NI
Sbjct: 558 -QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 160 ----------------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186
N L G + K IG++ L L LGHN +
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 37/146 (25%)
Query: 39 PGNLLAKNWTSNTSVCNWMGVTC--------DVHSHRVTV-------------------L 71
P L +W+SN + C + GVTC D+ S + V L
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 81
Query: 72 NISHLNLTGSIPSQLGNLSSLQALDLSFNRFNG--TIPSSIFSLNSLQILDLSDNQLSGS 129
+ SH+N GS+ S +SL +LDLS N +G T +S+ S + L+ L++S N L
Sbjct: 82 SNSHIN--GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 130 FPSSI---FNMSSLKVADFRKNRLSG 152
FP + ++SL+V D N +SG
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISG 162
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 58 GVTCDVHSHRVTVLNISHLNLTGSIPS--QLGNLSSLQALDLSFNR--FNGTIPSSIFSL 113
G C S +T L++S +L+G + + LG+ S L+ L++S N F G + S L
Sbjct: 92 GFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-SGGLKL 147
Query: 114 NSLQILDLSDNQLSGS 129
NSL++LDLS N +SG+
Sbjct: 148 NSLEVLDLSANSISGA 163
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 61 CDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120
C + + L + + TG IP L N S L +L LSFN +GTIPSS+ SL+ L+ L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQK 168
L N L G P + + +L+ N L+GE P+ + N+L G + K
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 169 GIGNLTKLEKLYLGHN 184
IG L L L L +N
Sbjct: 509 WIGRLENLAILKLSNN 524
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+ L++S+ L+G IP ++G++ L L+L N +G+IP + L L ILDLS N+L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 128 GSFPSSIFNMSSLKVADFRKNRLSGEFP 155
G P ++ ++ L D N LSG P
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%)
Query: 77 NLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFN 136
+LTG IPS L N ++L + LS NR G IP I L +L IL LS+N SG+ P+ + +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 137 MSSLKVADFRKNRLSGEFPA 156
SL D N +G PA
Sbjct: 537 CRSLIWLDLNTNLFNGTIPA 556
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 71 LNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSF 130
+++S+ LTG IP +G L +L L LS N F+G IP+ + SL LDL+ N +G+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 131 PSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKL 179
P+++F S A+F ++G+ I N G GNL + + +
Sbjct: 555 PAAMFKQSGKIAANF----IAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 78 LTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNM 137
L G IP +L + +L+ L L FN G IPS + + +L + LS+N+L+G P I +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 138 SSLKVADFRKNRLSGEFPANI 158
+L + N SG PA +
Sbjct: 514 ENLAILKLSNNSFSGNIPAEL 534
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%)
Query: 72 NISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFP 131
NI+ G N S+ LD+S+N +G IP I S+ L IL+L N +SGS P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 132 SSIFNMSSLKVADFRKNRLSGEFP 155
+ ++ L + D N+L G P
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIP 697
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 59 VTCDVHSHRVT---VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNS 115
++ DV R L++S N + IP LG+ S+LQ LD+S N+ +G +I +
Sbjct: 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 116 LQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGA 165
L++L++S NQ G P + SL+ +N+ +GE IP+ L GA
Sbjct: 249 LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE----IPDFLSGA 292
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 55 NWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIP-SSIFSL 113
+++ CD +T L++S + G++P G+ S L++L LS N F+G +P ++ +
Sbjct: 287 DFLSGACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 114 NSLQILDLSDNQLSGSFPSSIFNMS-SLKVADFRKNRLSGEFPANIP------------- 159
L++LDLS N+ SG P S+ N+S SL D N SG N+
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 160 -NKLPGAMQKGIGNLTKLEKLYLGHNRL 186
N G + + N ++L L+L N L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 68 VTVLNISHLNLTGSIPSQL-GNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
+ L+++ TG IP L G +L LDLS N F G +P S + L+ L LS N
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 127 SGSFP-SSIFNMSSLKVADFRKNRLSGEFPANIPN 160
SG P ++ M LKV D N SGE P ++ N
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 47/169 (27%)
Query: 56 WMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNS 115
W+G + +L +S+ + +G+IP++LG+ SL LDL+ N FNGTIP+++F
Sbjct: 509 WIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK--- 560
Query: 116 LQILDLSDNQLSGSFPSSIFNMSSLK-------------VADFRKNRLSGEFPANIP--- 159
Q ++ N ++G I N K + + NRLS P NI
Sbjct: 561 -QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 160 ----------------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186
N L G + K IG++ L L LGHN +
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 37/146 (25%)
Query: 39 PGNLLAKNWTSNTSVCNWMGVTC--------DVHSHRVTV-------------------L 71
P L +W+SN + C + GVTC D+ S + V L
Sbjct: 25 PDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84
Query: 72 NISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIP--SSIFSLNSLQILDLSDNQLSGS 129
+ SH+N GS+ S +SL +LDLS N +G + +S+ S + L+ L++S N L
Sbjct: 85 SNSHIN--GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 130 FPSSI---FNMSSLKVADFRKNRLSG 152
FP + ++SL+V D N +SG
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISG 165
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 58 GVTCDVHSHRVTVLNISHLNLTGSIPS--QLGNLSSLQALDLSFNR--FNGTIPSSIFSL 113
G C S +T L++S +L+G + + LG+ S L+ L++S N F G + S L
Sbjct: 95 GFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-SGGLKL 150
Query: 114 NSLQILDLSDNQLSGS 129
NSL++LDLS N +SG+
Sbjct: 151 NSLEVLDLSANSISGA 166
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Query: 50 NTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS 109
N ++C G C ++++ +V + S LT +IPS + + + LDL N+ + ++PS
Sbjct: 1 NEALCKKDGGVCSCNNNKNSV-DCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSK 55
Query: 110 IF-SLNSLQILDLSDNQLSGSFPSSIF----NMSSLKVADFRKNRLS-GEFPANI----- 158
F L L++L L+DN+L + P+ IF N+ +L V D + L G F +
Sbjct: 56 AFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 159 ---PNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
N+L + +LTKL L LG+N LQ
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 41/150 (27%)
Query: 66 HRVTVLNISHLN------LTGSIPSQLGNLSSL-------QAL------------DLSFN 100
HR+T L + +LN L I +L NL +L QAL +L +
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 101 RFN-GTIPSSIF-SLNSLQILDLSDNQLSGSFPSSIFN-MSSLKVADFRKNRLSGEFPAN 157
R ++P +F SL L L L N+L S P +F+ ++SLK N+L
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-----R 171
Query: 158 IPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
+P GA K LT+L+ L L +N+L+
Sbjct: 172 VPE---GAFDK----LTELKTLKLDNNQLK 194
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 52 SVCNWMGVTCDVHSHR-----------VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFN 100
S C+ G T D S R +L + +T P +L +L+ L L N
Sbjct: 15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74
Query: 101 RFNGTIPSSIF-SLNSLQILDLSDNQLSGSFPSSIFN-MSSLKVADFRKNRLSGEFPANI 158
+ G +P +F SL L +LDL NQL+ PS++F+ + LK N+L+ E P
Sbjct: 75 QL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELP--- 128
Query: 159 PNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
+GI LT L L L N+L+
Sbjct: 129 ---------RGIERLTHLTHLALDQNQLK 148
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 73 ISHLNLTGSIPSQLGN-----LSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+ HL+L+ L + L L+ L+L++N+ N + + L++LQ+L+LS N L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 128 GSFPSSIFNMSSLKVADFRKNRLS 151
+ S+ + + + D +KN ++
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIA 351
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+ VLN+++ + L +LQ L+LS+N S+ + L + +DL N ++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 128 GSFPSSIFNMSSLKVADFRKNRLSG-EFPANIPN 160
+ + L+ D R N L+ F +IP+
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRF----NGTIPSSIFSLNSLQILDLSD 123
+ VL ++H L P +L++L+ L L+ NR + +P++ L+ILD+S
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISR 535
Query: 124 NQLSGSFPSSIFNMSSLKVADFRKNRLSGE 153
NQL P SL V D N+ E
Sbjct: 536 NQLLAPNPDV---FVSLSVLDITHNKFICE 562
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQL 126
+ L+ISH + + LSSL+ L ++ N F IF+ L +L LDLS QL
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHN 184
P++ ++SSL+V + N+L ++P+ + LT L+K++L N
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQL-----KSVPDGI-------FDRLTSLQKIWLHTN 528
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQL 126
+T L++S L P+ +LSSLQ L+++ N+ ++P IF L SLQ + L N
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530
Query: 127 SGSFP 131
S P
Sbjct: 531 DCSCP 535
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
S + LDLSFN S FS LQ+LDLS ++
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+T L++S L P+ +LSSLQ L++S N F LNSLQ+LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 128 GS-------FPSSI 134
S FPSS+
Sbjct: 556 TSKKQELQHFPSSL 569
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQL 126
+ L+ISH + + LSSL+ L ++ N F IF+ L +L LDLS QL
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLSG--EFPANIPNKL 162
P++ ++SSL+V + N FP N L
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 82 IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG--SFPSSIFNMSS 139
+P L +L LDLS + P++ SL+SLQ+L++S N +FP N S
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--S 543
Query: 140 LKVADFRKNRL 150
L+V D+ N +
Sbjct: 544 LQVLDYSLNHI 554
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLS 122
S + LDLSFN S FS LQ+LDLS
Sbjct: 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 84
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+T L++S L P+ +LSSLQ L++S N F LNSLQ+LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 128 GS-------FPSSI 134
S FPSS+
Sbjct: 532 TSKKQELQHFPSSL 545
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQL 126
+ L+ISH + + LSSL+ L ++ N F IF+ L +L LDLS QL
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLSG--EFPANIPNKL 162
P++ ++SSL+V + N FP N L
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 82 IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG--SFPSSIFNMSS 139
+P L +L LDLS + P++ SL+SLQ+L++S N +FP N S
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--S 519
Query: 140 LKVADFRKNRL 150
L+V D+ N +
Sbjct: 520 LQVLDYSLNHI 530
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLS 122
S + LDLSFN S FS LQ+LDLS
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+T L++S L P+ +LSSLQ L++S N F LNSLQ+LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 128 GS-------FPSSI 134
S FPSS+
Sbjct: 237 TSKKQELQHFPSSL 250
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQL 126
+ L+ISH + + LSSL+ L ++ N F IF+ L +L LDLS QL
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLSG--EFPANIPNKL 162
P++ ++SSL+V + N FP N L
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 82 IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG--SFPSSIFNMSS 139
+P L +L LDLS + P++ SL+SLQ+L++S N +FP N S
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--S 224
Query: 140 LKVADFRKNRL 150
L+V D+ N +
Sbjct: 225 LQVLDYSLNHI 235
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 71 LNISHLNLTGSIPSQL-GNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGS 129
LN+S N GSI S++ NL L+ LDLS+N S L +L+ L L NQL S
Sbjct: 328 LNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-S 385
Query: 130 FPSSIFN 136
P IF+
Sbjct: 386 VPDGIFD 392
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 89 LSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147
L+ L L+LS N F G+I S +F L+ L++LDLS N + S + +LK
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 148 NRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHN 184
N+L ++P+ + LT L+K++L N
Sbjct: 381 NQLK-----SVPDGI-------FDRLTSLQKIWLHTN 405
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 89 LSSLQALDLSFNRFNGTIPSSIF--SLNSLQILDLSDNQLSGSFPSSIF-NMSSLKVADF 145
L++L+ L L+ +G + S F L SL++L L DN + P+S F NM V D
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 146 RKNRL 150
N++
Sbjct: 162 TFNKV 166
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 81 SIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSL 140
+P+++ NLS+L+ LDLS NR ++P+ + S L+ DN ++ + P N+ +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318
Query: 141 KVADFRKNRLSGEF 154
+ N L +F
Sbjct: 319 QFLGVEGNPLEKQF 332
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 71 LNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSF 130
L + LTG P+ S +Q L L N+ L+ L+ L+L DNQ+S
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 131 PSSIFNMSSL 140
P S +++SL
Sbjct: 119 PGSFEHLNSL 128
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 50 NTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS 109
N C + D + L++SH N S+P L +L LD+SFNR +
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 110 IFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
+ L LQ L L N+L P + L+ N+L+ E PA + N L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGL 171
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 50 NTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS 109
N C + D + L++SH N S+P L +L LD+SFNR +
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 110 IFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
+ L LQ L L N+L P + L+ N+L+ E PA + N L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGL 171
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 50 NTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS 109
N C + D + L++SH N S+P L +L LD+SFNR +
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 110 IFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
+ L LQ L L N+L P + L+ N+L+ E PA + N L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGL 171
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 50 NTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS 109
N C + D + L++SH N S+P L +L LD+SFNR +
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 110 IFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
+ L LQ L L N+L P + L+ N+L+ E PA + N L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGL 171
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQ 125
R+ VL++ H N SIP Q+ L +LQ L+++ N+ ++P IF L SLQ + L N
Sbjct: 422 RIKVLDL-HSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNP 479
Query: 126 LSGSFP 131
S P
Sbjct: 480 WDCSCP 485
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLN-SLQILDLSD 123
S + T+LNIS ++ S + +LS L+ L +S NR + S+F N L+ LDLS
Sbjct: 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78
Query: 124 NQL 126
N+L
Sbjct: 79 NKL 81
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQL 126
+T LN++H L L++L LDLS+N+ ++P +F L L+ L L NQL
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193
Query: 127 SGSFPSSIFN-MSSLK 141
S P +F+ ++SL+
Sbjct: 194 K-SVPDGVFDRLTSLQ 208
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 21/123 (17%)
Query: 72 NISHLNLTGSIPSQLGN-----LSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQ 125
N+++L LTG+ L N L++L+ L L N+ ++P +F L +L L+L+ NQ
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144
Query: 126 LSGSFPSSIFN-MSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHN 184
L S P +F+ +++L D N+L P + +K LT+L+ L L N
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDK-----------LTQLKDLRLYQN 191
Query: 185 RLQ 187
+L+
Sbjct: 192 QLK 194
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 19/121 (15%)
Query: 72 NISHLNLTGSI---PSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQLS 127
N+ +L L G+ S L L++L L L+ N+ ++P+ +F L +L+ L L +NQL
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ 122
Query: 128 GSFPSSIFN-MSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186
S P +F+ +++L + N+L LP + + NLT+L+ L +N+L
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQS---------LPKGVFDKLTNLTELD---LSYNQL 169
Query: 187 Q 187
Q
Sbjct: 170 Q 170
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 50 NTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS 109
N C + D + L++SH N S+P L +L LD+SFNR +
Sbjct: 62 NLDRCELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 120
Query: 110 IFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
+ L LQ L L N+L P + L+ N L+ E PA + N L
Sbjct: 121 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 172
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 41/133 (30%)
Query: 42 LLAKNWTSNTSV-CNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFN 100
L +K ++ S+ C+ GV CD S T SIPS G +++++LDLSFN
Sbjct: 17 LFSKRCSAQESLSCDASGV-CDGRSRSFT-----------SIPS--GLTAAMKSLDLSFN 62
Query: 101 ------------------------RFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFN 136
R N + +SL SL+ LDLSDN LS S SS F
Sbjct: 63 KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFG 121
Query: 137 -MSSLKVADFRKN 148
+SSLK + N
Sbjct: 122 PLSSLKYLNLMGN 134
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 50 NTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS 109
N C + D + L++SH N S+P L +L LD+SFNR +
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 110 IFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
+ L LQ L L N+L P + L+ N L+ E PA + N L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGL 171
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 50 NTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS 109
N C + D + L++SH N S+P L +L LD+SFNR +
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 110 IFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
+ L LQ L L N+L P + L+ N L+ E PA + N L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+T L+I+H NLT + +L L+ L+LS+N + S + L LQ + L QL+
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285
Query: 128 GSFPSSIFNMSSLKVADFRKNRLS 151
P + ++ L+V + N+L+
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 61 CDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120
C+ + VL H ++P G + + LDL NR S L+ L+
Sbjct: 7 CECSAQDRAVL--CHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELE 62
Query: 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLE 177
L++N +S P + N+ +L+ R NRL +P + G+ NLTKL+
Sbjct: 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLK---------LIPLGVFTGLSNLTKLD 110
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 83 PSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQ---LSGSFPSSIFNMS 138
P NL +L+ L L NR IP +F+ L++L LD+S+N+ L ++N+
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131
Query: 139 SLKVAD 144
SL+V D
Sbjct: 132 SLEVGD 137
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 86 LGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFN-MSSLKVAD 144
L ++LQ L L +R N + +SL SL+ LDLSDN LS S SS F +SSLK +
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLN 104
Query: 145 FRKN 148
N
Sbjct: 105 LMGN 108
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 71 LNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSF 130
L++SH N S+P L +L LD+SFNR ++ L LQ L L N+L
Sbjct: 82 LDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 131 PSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
P + L+ N L+ E PA + N L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 71 LNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSF 130
L++SH N S+P L +L LD+SFNR ++ L LQ L L N+L
Sbjct: 82 LDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 131 PSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
P + L+ N L+ E PA + N L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNR 101
HR+ +LN+SH NL S L SL LD SFNR
Sbjct: 492 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 527
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 71 LNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSF 130
L++SH N S+P L +L LD+SFNR ++ L LQ L L N+L
Sbjct: 82 LDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 131 PSSIFNMSSLKVADFRKNRLSGEFPANIPNKL 162
P + L+ N L+ E PA + N L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNR 101
HR+ +LN+SH NL S L SL LD SFNR
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 88 NLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFN-MSSLKVADFR 146
+L L+ L LS N + L SL L+L DN+L+ + P+ F +S L+ R
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLR 115
Query: 147 KNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKL 179
N + P+ N++P + +G L +LE +
Sbjct: 116 NNPIES-IPSYAFNRVPSLRRLDLGELKRLEYI 147
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 70 VLNISHLNLTGSIPSQLGNLSSL---QALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
++N+ +LNL + NL++L + L+LS NR + P S L SL+ L L Q+
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHN 184
+ ++ ++ SL+ + N L ++P+ L L +LE+++L HN
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL-----MSLPHDL-------FTPLHRLERVHLNHN 260
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 57 MGVTCDVHSHRVTVLNISHLNLTGS--IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLN 114
+GV C + L++SH ++ S QL NLS LQ L+LS N G +
Sbjct: 338 LGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECP 397
Query: 115 SLQILDLSDNQLSGSFPSSIF-NMSSLKV 142
L++LDL+ +L + P S F N+ L+V
Sbjct: 398 QLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRL 150
S+++L+L +RF+ ++ LQ LDL+ L G PS + ++ LK N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 151 -------SGEFPANIPNKLPGAMQK---GIGNLTK---LEKLYLGHNRLQ 187
+ FP+ + G ++K G+G L K L+ L L HN ++
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIE 360
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 88 NLSSLQALDLSFNRFNG-TIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNM--SSLKVAD 144
N+SSL+ LD+S N N + S+ +L+LS N L+G S+F +KV D
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG----SVFRCLPPKVKVLD 456
Query: 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
NR+ +IP K + +L L++L + N+L+
Sbjct: 457 LHNNRI-----MSIP--------KDVTHLQALQELNVASNQLK 486
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQ 125
+V VL++ H N SIP + +L +LQ L+++ N+ ++P +F L SLQ + L DN
Sbjct: 451 KVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508
Query: 126 LSGSFP 131
+ P
Sbjct: 509 WDCTCP 514
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQ 125
++T LN+ + L +L+ L L L+ N+ ++P +F L L L L NQ
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 126 LSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNR 185
L S PS +F+ ++ ++ RL+ +IP GA K LT L+ L L N+
Sbjct: 119 LK-SLPSGVFD----RLTKLKELRLNTNQLQSIP---AGAFDK----LTNLQTLSLSTNQ 166
Query: 186 LQ 187
LQ
Sbjct: 167 LQ 168
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 38/100 (38%)
Query: 89 LSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147
L+ L L+L +N+ T+ + +F L L L L++NQL+ S P +F+
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFD----------- 104
Query: 148 NRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
+LT+L+KLYLG N+L+
Sbjct: 105 ------------------------HLTQLDKLYLGGNQLK 120
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQ 125
++T LN+ + L +L+ L L L+ N+ ++P +F L L L L NQ
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 126 LSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNR 185
L S PS +F+ ++ ++ RL+ +IP GA K LT L+ L L N+
Sbjct: 119 LK-SLPSGVFD----RLTKLKELRLNTNQLQSIP---AGAFDK----LTNLQTLSLSTNQ 166
Query: 186 LQ 187
LQ
Sbjct: 167 LQ 168
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 38/100 (38%)
Query: 89 LSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147
L+ L L+L +N+ T+ + +F L L L L++NQL+ S P +F+
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFD----------- 104
Query: 148 NRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
+LT+L+KLYLG N+L+
Sbjct: 105 ------------------------HLTQLDKLYLGGNQLK 120
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 88 NLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFN-MSSLKVADFR 146
+L L+ L LS N + L SL L+L DN+L+ + P+ F +S L+ R
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLR 115
Query: 147 KNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKL 179
N + P+ N++P + +G L +LE +
Sbjct: 116 NNPIES-IPSYAFNRVPSLRRLDLGELKRLEYI 147
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 70 VLNISHLNL----TGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQ 125
++N+ +LNL IP+ L L L+ L+LS NR + P S L SL+ L L Q
Sbjct: 155 LVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 126 LSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHN 184
++ ++ ++ SL+ + N L ++P+ L L +LE+++L HN
Sbjct: 214 VATIERNAFDDLKSLEELNLSHNNL-----MSLPHDL-------FTPLHRLERVHLNHN 260
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 52 SVCNWMGVTCDVHSH-RVTV-----LNISHLNLT----GSIPSQL-GNLSSLQALDLSFN 100
S C+ G T + +S R +V ++L+L S+P+ + L+SL L L N
Sbjct: 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN 62
Query: 101 RFNGTIPSSIF-SLNSLQILDLSDNQLSGSFPSSIFN-MSSLKVADFRKNRLSGEFPANI 158
+ ++P+ +F L SL L+LS NQL S P+ +F+ ++ LK N+L P +
Sbjct: 63 KLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGV 119
Query: 159 PNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
+K LT+L+ L L N+L+
Sbjct: 120 FDK-----------LTQLKDLRLYQNQLK 137
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRL 150
S+++++L +RF+ S+ +Q LDL+ L+G PS I M+SLK N
Sbjct: 254 SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF 312
Query: 151 -------SGEFPANIPNKLPGAMQK---GIGNLTKLE---KLYLGHNRLQ 187
+ FP+ + G M+K G L KLE KL L H+ ++
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIE 362
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 57 MGVTCDVHSHRVTVLNISHLNLTGSIPS--QLGNLSSLQALDLSFNRFNGTIPSSIFSLN 114
+G C + L++SH ++ S QL NL LQ L+LS+N G +
Sbjct: 340 LGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECP 399
Query: 115 SLQILDLSDNQLSGSFPSSIF-NMSSLKV 142
L++LD++ L P S F N+ L+V
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQNLHLLRV 428
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRF-NGTIPSS--IFSLNSLQILDLS 122
H + VLN+SH L S L L L+ L+L N F +G+I + + + SL+IL LS
Sbjct: 424 HLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILS 483
Query: 123 DNQLSGSFPSSIFNMSSLKVADFRKNRLSGE 153
L + + ++ D N L+G+
Sbjct: 484 SCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+TVLN++H L P+ S L LD FN + P L L++L+L N+LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
R V + SHL LT IP L S++ L+L+ N+ P++ + L ILD N +
Sbjct: 5 RYNVADCSHLKLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI 61
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLS 151
S P + LKV + + N LS
Sbjct: 62 SKLEPELCQILPLLKVLNLQHNELS 86
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 90 SSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147
++L LDLS+N + S L SL+ L L N + P S + +S+L+ ++
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 107 PSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAM 166
PS L +L ILDLS+N ++ + + +L++ DF+ N L+ + P P
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGG-PVNF 531
Query: 167 QKGIGNL 173
KG+ +L
Sbjct: 532 LKGLSHL 538
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+TVLN++H L + S L +LD+ FN + P L L++L+L N+LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 67 RVTVLNISHLNLT--------GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQ 117
++ +L++ H NL G L LS L L+L N F+ IP +F L L+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELK 563
Query: 118 ILDLSDNQLSGSFPSSIF-NMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKL 176
I+DL N L + P+S+F N SLK + +KN ++ + K+ G NLT+L
Sbjct: 564 IIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITS-----VEKKVFGP---AFRNLTEL 614
Query: 177 E 177
+
Sbjct: 615 D 615
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+TVLN++H L + S L +LD+ FN + P L L++L+L N+LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 67 RVTVLNISHLNLT--------GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQ 117
++ +L++ H NL G L LS L L+L N F+ IP +F L L+
Sbjct: 510 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELK 568
Query: 118 ILDLSDNQLSGSFPSSIF-NMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKL 176
I+DL N L + P+S+F N SLK + +KN ++ + K+ G NLT+L
Sbjct: 569 IIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITS-----VEKKVFGP---AFRNLTEL 619
Query: 177 E 177
+
Sbjct: 620 D 620
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+TVLN++H L + S L +LD+ FN + P L L++L+L N+LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 67 RVTVLNISHLNLT--------GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQ 117
++ +L++ H NL G L LS L L+L N F+ IP +F L L+
Sbjct: 515 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELK 573
Query: 118 ILDLSDNQLSGSFPSSIF-NMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKL 176
I+DL N L + P+S+F N SLK + +KN ++ + K+ G NLT+L
Sbjct: 574 IIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITS-----VEKKVFGP---AFRNLTEL 624
Query: 177 E 177
+
Sbjct: 625 D 625
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 72 NISHLNLTGS----IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+++ L L G+ +P +L N L +DLS NR + S ++ L L LS N+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 128 GSFPSSIFNMSSLKVADFRKNRLS 151
P + + SL++ N +S
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
+T++++S+ ++ N++ L L LS+NR P + L SL++L L N +S
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 128 GSFPSSIFN 136
P FN
Sbjct: 116 -VVPEGAFN 123
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 90 SSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQLSGS-FPSSIFNMSSLKVADFRK 147
SSL L + NR +P +FS L ++ +++ N L S F F+ L +
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 148 NRLSGEFPANIP----------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
+L+G P ++P NK+ + + +KL +L LGHN+++
Sbjct: 182 AKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 16/112 (14%)
Query: 86 LGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145
L NL++L L+LS N + S++ L SLQ L+ S NQ++ P + N+++L+ D
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 146 RKNRLSG----------EFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
N++S E N++ GI LT L++L L N+L+
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK 230
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 81 SIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQLSGSFPSSIFN-MS 138
S+P+ G SS L+L N+ ++P +F L L L LS NQ+ S P +F+ ++
Sbjct: 21 SVPT--GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLT 76
Query: 139 SLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187
L + +N+L ++PN G K LT+L++L L N+L+
Sbjct: 77 KLTILYLHENKL-----QSLPN---GVFDK----LTQLKELALDTNQLK 113
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 88 NLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIF-NMSSLKVADFR 146
+L L+ L LS N + L +L L+L DN+L+ + P+ F +S LK R
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144
Query: 147 KNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLG 182
N + P+ N++P + +G L +L + G
Sbjct: 145 NNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 72 NISHLNLTGSIPSQLGNLS---SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG 128
N+ +LNL ++ NL+ L LDLS N + P S L LQ L + +Q+
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Query: 129 SFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHN 184
++ N+ SL + N L+ +P+ L L LE+++L HN
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTL-----LPHDL-------FTPLHHLERIHLHHN 289
>pdb|1QZ9|A Chain A, The Three Dimensional Structure Of Kynureninase From
Pseudomonas Fluorescens
Length = 416
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 65 SHRVTVLNISHL-NLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSD 123
SH L I L + G++P L + A+ ++ NG S F S Q+ DL
Sbjct: 191 SHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 250
Query: 124 NQLSGSF 130
LSG F
Sbjct: 251 QPLSGWF 257
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 89 LSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSL 140
L SL+ L L NR S L+S+++L L DNQ++ P + + SL
Sbjct: 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRF-NGTIPS--SIFSLNSLQILDLS 122
H + VLN+SH L S L +LQ L+L N F G I S+ +L L+IL LS
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484
Query: 123 DNQLSGSFPSSIFNMSSLKVADFRKNRLSG 152
LS + ++ + D NRL+
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQ--ILDLSDN 124
R+ +L +S +L+ +L + +DLS NR SSI +L+ L+ L+L+ N
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS---SSIEALSHLKGIYLNLASN 533
Query: 125 QLSGSFPSSIFNMSSLKVADFRKNRL 150
+S PS + +S + + R+N L
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPL 559
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 84 SQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG-SFPSSIFNMSSLKV 142
S L L+SLQ L S N+ P + +L +L+ LD+S N++S S + + N+ SL
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 143 ADFRKNRLSGEFPANIPNKLP-----GAMQKGIG---NLTKLEKLYLGHNRL 186
+ N++S P I L G K IG +LT L L L +N++
Sbjct: 203 TN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 251
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 84 SQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG-SFPSSIFNMSSLKV 142
S L L+SLQ L S N+ P + +L +L+ LD+S N++S S + + N+ SL
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 143 ADFRKNRLSGEFPANIPNKLP-----GAMQKGIG---NLTKLEKLYLGHNRL 186
+ N++S P I L G K IG +LT L L L +N++
Sbjct: 203 TN---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 251
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
V L++S+ +T S L +LQAL L+ N N S SL SL+ LDLS N LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 128 GSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGH 183
S +SSL + N P K G +LTKL+ L +G+
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN----------PYKTLGETSL-FSHLTKLQILRVGN 158
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 89 LSSLQALDLSFNRFNGTIPSSIF--SLNSLQILDLSDNQLSGSFPSSIF-NMSSLKVADF 145
L++L+ L L+ +G + S F L SL++L L DN + P+S F NM V D
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 146 RKNRL 150
N++
Sbjct: 162 TFNKV 166
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 70 VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQLSG 128
+L+ +HLN S + +L+ LDLS N + T+ +FS L +L++L L +N +
Sbjct: 70 LLSHNHLNFISS--EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV 126
Query: 129 SFPSSIFNMSSLKVADFRKNRLSGEFPANI---PNKLPGAMQKGIGNLTKLEKL 179
++ +M+ L+ +N++S FP + NKLP M + + KL+KL
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS-NKLKKL 178
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127
V L++S+ +T S L +LQAL L+ N N S SL SL+ LDLS N LS
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 128 GSFPSSIFNMSSL 140
S +SSL
Sbjct: 88 NLSSSWFKPLSSL 100
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 108 SSIFSLNSLQILDLSDNQLSGSFPSSIFN-MSSLKVADFRKNRLSGEFPANIPNKLPGAM 166
S++ L +L L L+ NQL S P+ +F+ +++LK +N+L LP +
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS---------LPDGV 128
Query: 167 QKGIGNLTKLEKLYLGHNRLQ 187
LT L LYL HN+LQ
Sbjct: 129 ---FDKLTNLTYLYLYHNQLQ 146
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQL 126
+T L + H L L++L LDL N+ ++P +F L L+ L L+DNQL
Sbjct: 135 LTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
Query: 127 SGSFPSSIFN 136
S P +F+
Sbjct: 194 K-SVPDGVFD 202
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 83 PSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQLSGSFPSSIF-NMSSL 140
P +L +LQ L + N+ IP+ +F L L LDL+DN L S P F N+ SL
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSL 107
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
S + LDLSFN S FS LQ+LDLS ++
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 65
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
S + LDLSFN S FS LQ+LDLS ++
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
S + LDLSFN S FS LQ+LDLS ++
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 66
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
+++ + I+ N+T +IP L SL L L N+ +S+ LN+L L LS N +
Sbjct: 172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186
S S+ N L+ N+L K+PG G+ + ++ +YL +N +
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV---------KVPG----GLADHKYIQVVYLHNNNI 275
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
+++ + I+ N+T +IP L SL L L N+ +S+ LN+L L LS N +
Sbjct: 172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186
S S+ N L+ N+L K+PG G+ + ++ +YL +N +
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV---------KVPG----GLADHKYIQVVYLHNNNI 275
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 150 LSGEFPANIPNKL-PGAMQKGIGNLTKL 176
L GE PA IPN L P Q +G L KL
Sbjct: 192 LIGEDPAGIPNNLMPYVAQVAVGKLEKL 219
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 70 VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQLSG 128
VL + +T P L+ L LDL N+ +P+ +F L L L L+DNQL
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK- 99
Query: 129 SFPSSIF-NMSSL 140
S P F N+ SL
Sbjct: 100 SIPRGAFDNLKSL 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 70 VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQLSG 128
VL + +T P L+ L LDL N+ +P+ +F L L L L+DNQL
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 129 SFPSSIF-NMSSL 140
S P F N+ SL
Sbjct: 92 SIPRGAFDNLKSL 104
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 70 VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQLSG 128
VL + +T P L+ L LDL N+ +P+ +F L L L L+DNQL
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 129 SFPSSIF-NMSSL 140
S P F N+ SL
Sbjct: 92 SIPRGAFDNLRSL 104
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 70 VLNISHLNLTGSIPSQLGNLS---SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126
+ N+ +LNL + NL+ L+ L++S N F P S L+SL+ L + ++Q+
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 127 SGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHN 184
S ++ ++SL + N LS ++P+ L L L +L+L HN
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLS-----SLPHDL-------FTPLRYLVELHLHHN 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,505,290
Number of Sequences: 62578
Number of extensions: 208868
Number of successful extensions: 810
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 292
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)