Query 038329
Match_columns 187
No_of_seqs 187 out of 3510
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.6E-21 5.6E-26 172.5 13.5 163 21-186 27-224 (968)
2 PLN03150 hypothetical protein; 99.8 5.2E-18 1.1E-22 144.7 12.0 136 17-158 366-510 (623)
3 PLN00113 leucine-rich repeat r 99.6 4.1E-15 8.9E-20 133.0 7.2 90 67-156 141-230 (968)
4 KOG0617 Ras suppressor protein 99.5 9.8E-15 2.1E-19 103.6 0.5 118 65-186 32-162 (264)
5 KOG0617 Ras suppressor protein 99.3 4.8E-14 1E-18 100.1 -5.1 119 65-187 55-186 (264)
6 PLN03150 hypothetical protein; 99.2 3.1E-11 6.7E-16 103.4 6.5 94 91-184 419-525 (623)
7 KOG4194 Membrane glycoprotein 99.1 5E-11 1.1E-15 98.5 3.6 87 65-151 124-210 (873)
8 KOG0472 Leucine-rich repeat pr 99.1 1.5E-11 3.2E-16 97.6 0.5 106 67-187 436-541 (565)
9 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.5E-15 84.3 3.9 104 67-186 20-125 (175)
10 KOG4194 Membrane glycoprotein 99.0 1.3E-11 2.8E-16 101.9 -2.4 119 68-186 295-428 (873)
11 KOG0444 Cytoskeletal regulator 99.0 3.8E-11 8.3E-16 100.2 -0.9 107 65-186 77-185 (1255)
12 KOG0444 Cytoskeletal regulator 99.0 1.5E-11 3.2E-16 102.6 -3.4 119 65-186 221-351 (1255)
13 PF13855 LRR_8: Leucine rich r 99.0 3.8E-10 8.2E-15 67.6 3.5 36 116-151 3-38 (61)
14 PF13855 LRR_8: Leucine rich r 99.0 6.6E-10 1.4E-14 66.5 3.3 61 90-150 1-61 (61)
15 KOG0472 Leucine-rich repeat pr 98.9 6.6E-11 1.4E-15 94.0 -4.1 21 165-186 289-309 (565)
16 PF14580 LRR_9: Leucine-rich r 98.8 3.6E-09 7.9E-14 76.5 4.3 105 65-181 41-147 (175)
17 PRK15387 E3 ubiquitin-protein 98.8 1.5E-08 3.3E-13 88.2 8.2 90 91-187 343-458 (788)
18 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.5E-14 84.3 0.9 80 67-150 285-364 (490)
19 KOG0618 Serine/threonine phosp 98.8 6.1E-10 1.3E-14 96.1 -0.7 106 65-185 382-487 (1081)
20 KOG0618 Serine/threonine phosp 98.8 1.6E-10 3.5E-15 99.5 -4.5 107 66-187 359-465 (1081)
21 PF08263 LRRNT_2: Leucine rich 98.7 1.7E-08 3.7E-13 55.9 3.6 40 22-62 2-43 (43)
22 PRK15370 E3 ubiquitin-protein 98.7 2.5E-08 5.5E-13 86.9 6.3 76 67-151 221-296 (754)
23 PRK15370 E3 ubiquitin-protein 98.7 7.1E-08 1.5E-12 84.1 7.9 80 67-156 200-279 (754)
24 cd00116 LRR_RI Leucine-rich re 98.7 4.7E-09 1E-13 82.6 0.3 18 169-186 216-233 (319)
25 KOG0532 Leucine-rich repeat (L 98.6 1.5E-09 3.3E-14 89.5 -3.7 118 65-187 120-247 (722)
26 KOG1259 Nischarin, modulator o 98.6 1E-08 2.2E-13 79.2 -0.0 107 65-187 306-412 (490)
27 PRK15387 E3 ubiquitin-protein 98.6 2.1E-07 4.6E-12 81.2 8.0 34 115-152 283-316 (788)
28 cd00116 LRR_RI Leucine-rich re 98.6 9.9E-09 2.2E-13 80.8 -0.1 115 65-187 80-206 (319)
29 PLN03210 Resistant to P. syrin 98.5 4.8E-07 1E-11 82.9 9.9 89 66-156 611-699 (1153)
30 PLN03210 Resistant to P. syrin 98.5 3E-07 6.5E-12 84.2 8.6 82 66-151 778-859 (1153)
31 KOG4237 Extracellular matrix p 98.5 8.6E-09 1.9E-13 81.9 -2.5 86 66-151 67-153 (498)
32 KOG4237 Extracellular matrix p 98.4 4.9E-08 1.1E-12 77.7 0.9 90 85-186 269-358 (498)
33 COG4886 Leucine-rich repeat (L 98.4 8.4E-08 1.8E-12 78.1 1.6 86 67-156 117-203 (394)
34 PF12799 LRR_4: Leucine Rich r 98.4 3.3E-07 7.2E-12 50.9 3.2 37 114-151 1-37 (44)
35 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.2E-12 75.9 2.6 79 70-151 97-176 (394)
36 KOG1859 Leucine-rich repeat pr 98.3 3E-08 6.5E-13 84.3 -4.2 106 65-186 186-291 (1096)
37 KOG4658 Apoptotic ATPase [Sign 98.2 4.5E-07 9.7E-12 80.5 2.0 105 66-183 545-651 (889)
38 KOG1859 Leucine-rich repeat pr 98.2 2.8E-08 6E-13 84.5 -6.4 102 67-186 165-266 (1096)
39 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 4E-11 47.9 2.8 36 91-127 2-37 (44)
40 KOG4579 Leucine-rich repeat (L 98.1 8.9E-08 1.9E-12 66.0 -3.4 83 66-151 53-136 (177)
41 KOG0532 Leucine-rich repeat (L 98.1 8.4E-08 1.8E-12 79.5 -5.3 113 68-186 77-201 (722)
42 KOG0531 Protein phosphatase 1, 98.0 1.7E-06 3.7E-11 71.0 0.9 103 66-186 95-198 (414)
43 KOG4579 Leucine-rich repeat (L 98.0 4.6E-07 1E-11 62.5 -2.7 103 67-185 28-134 (177)
44 KOG0531 Protein phosphatase 1, 97.9 3.3E-06 7.2E-11 69.3 1.6 104 66-187 72-175 (414)
45 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 5E-10 57.5 5.0 105 67-183 43-149 (233)
46 KOG3207 Beta-tubulin folding c 97.9 3.5E-06 7.7E-11 68.0 0.5 114 66-186 197-313 (505)
47 KOG4658 Apoptotic ATPase [Sign 97.8 1.4E-05 3E-10 71.2 3.3 104 67-185 524-629 (889)
48 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.9E-09 52.8 5.1 103 69-186 22-125 (233)
49 KOG2739 Leucine-rich acidic nu 97.3 8.3E-05 1.8E-09 56.4 1.1 82 66-151 43-129 (260)
50 KOG1909 Ran GTPase-activating 97.3 1.8E-05 3.8E-10 62.3 -2.8 112 67-186 186-310 (382)
51 KOG3665 ZYG-1-like serine/thre 97.1 0.00024 5.2E-09 61.9 2.2 114 65-186 147-262 (699)
52 KOG2739 Leucine-rich acidic nu 97.1 0.0004 8.6E-09 52.8 2.9 91 82-185 35-127 (260)
53 KOG3207 Beta-tubulin folding c 97.1 0.00016 3.5E-09 58.6 0.5 110 66-186 222-338 (505)
54 KOG3665 ZYG-1-like serine/thre 96.9 0.00024 5.3E-09 61.9 0.3 107 66-185 122-231 (699)
55 KOG1909 Ran GTPase-activating 96.7 0.00034 7.4E-09 55.3 -0.3 115 65-187 156-283 (382)
56 PRK15386 type III secretion pr 96.6 0.006 1.3E-07 50.0 5.9 80 66-158 52-134 (426)
57 KOG2123 Uncharacterized conser 96.5 4.9E-05 1.1E-09 58.5 -6.3 104 65-180 18-123 (388)
58 KOG2982 Uncharacterized conser 96.2 0.0011 2.4E-08 51.7 -0.4 70 55-124 85-156 (418)
59 PRK15386 type III secretion pr 96.0 0.021 4.5E-07 46.9 6.1 52 65-125 71-123 (426)
60 PF00560 LRR_1: Leucine Rich R 95.9 0.0031 6.7E-08 29.3 0.6 12 140-151 2-13 (22)
61 KOG2982 Uncharacterized conser 95.8 0.0026 5.7E-08 49.7 0.1 85 66-150 71-158 (418)
62 PF00560 LRR_1: Leucine Rich R 95.8 0.0043 9.3E-08 28.8 0.8 11 117-127 3-13 (22)
63 COG5238 RNA1 Ran GTPase-activa 95.7 0.0044 9.6E-08 47.9 1.0 102 85-187 87-227 (388)
64 KOG2120 SCF ubiquitin ligase, 95.6 8E-05 1.7E-09 57.9 -8.6 118 67-184 186-323 (419)
65 KOG0473 Leucine-rich repeat pr 95.3 0.00015 3.2E-09 54.6 -7.8 84 65-151 41-124 (326)
66 COG5238 RNA1 Ran GTPase-activa 94.9 0.015 3.2E-07 45.1 1.6 86 66-151 30-133 (388)
67 PF13306 LRR_5: Leucine rich r 94.2 0.3 6.5E-06 32.8 6.8 79 67-148 13-91 (129)
68 KOG0473 Leucine-rich repeat pr 93.8 0.00096 2.1E-08 50.3 -6.6 87 85-186 37-123 (326)
69 KOG2123 Uncharacterized conser 93.7 0.002 4.4E-08 49.8 -5.2 82 89-185 18-99 (388)
70 PF13504 LRR_7: Leucine rich r 93.6 0.048 1E-06 23.5 1.2 9 141-149 4-12 (17)
71 PF13306 LRR_5: Leucine rich r 93.2 0.42 9.1E-06 32.1 6.2 61 85-147 7-67 (129)
72 smart00369 LRR_TYP Leucine-ric 92.8 0.089 1.9E-06 25.1 1.7 14 138-151 2-15 (26)
73 smart00370 LRR Leucine-rich re 92.8 0.089 1.9E-06 25.1 1.7 14 138-151 2-15 (26)
74 smart00365 LRR_SD22 Leucine-ri 90.2 0.21 4.7E-06 24.1 1.4 13 138-150 2-14 (26)
75 PF13516 LRR_6: Leucine Rich r 89.3 0.12 2.7E-06 24.1 0.2 12 175-186 3-14 (24)
76 KOG3864 Uncharacterized conser 87.9 0.049 1.1E-06 40.3 -2.6 82 67-148 102-186 (221)
77 smart00368 LRR_RI Leucine rich 87.3 0.41 8.9E-06 23.4 1.3 12 175-186 3-14 (28)
78 KOG2120 SCF ubiquitin ligase, 85.4 0.13 2.8E-06 40.5 -1.6 60 113-183 312-372 (419)
79 smart00364 LRR_BAC Leucine-ric 80.0 1.3 2.9E-05 21.3 1.3 13 115-127 3-15 (26)
80 KOG1947 Leucine rich repeat pr 71.3 0.92 2E-05 37.5 -0.9 88 86-184 210-305 (482)
81 TIGR00864 PCC polycystin catio 47.4 13 0.00027 38.1 2.0 32 96-127 1-32 (2740)
82 smart00367 LRR_CC Leucine-rich 41.1 21 0.00046 16.6 1.4 12 138-149 2-13 (26)
83 KOG4308 LRR-containing protein 39.9 0.78 1.7E-05 38.7 -6.4 41 138-186 262-302 (478)
84 KOG3763 mRNA export factor TAP 38.2 16 0.00034 31.5 1.0 13 67-79 219-231 (585)
85 KOG3763 mRNA export factor TAP 34.7 20 0.00043 30.9 1.1 64 87-152 215-284 (585)
86 TIGR00864 PCC polycystin catio 21.2 63 0.0014 33.5 1.9 32 72-103 1-32 (2740)
87 smart00446 LRRcap occurring C- 20.1 34 0.00073 16.4 -0.0 14 170-183 9-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.6e-21 Score=172.53 Aligned_cols=163 Identities=38% Similarity=0.706 Sum_probs=119.3
Q ss_pred chhHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCceeeEeCCCCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCC
Q 038329 21 ITTDQDALLTLKPHIAHEPGNLLAKNWTSNTSVCNWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFN 100 (187)
Q Consensus 21 ~~~~~~~l~~~~~~l~~~~~~~~~~~w~~~~~~c~w~g~~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 100 (187)
.+.|..||++|+.++ .+|...+. +|....++|.|.|++|.. .++|+.|+++++++.+.++..|..++.|++|++++|
T Consensus 27 ~~~~~~~l~~~~~~~-~~~~~~~~-~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 27 HAEELELLLSFKSSI-NDPLKYLS-NWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred CHHHHHHHHHHHHhC-CCCcccCC-CCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence 568899999999999 56766677 898777899999999974 468999999999999888888888999999999999
Q ss_pred cccccCCcccC-CCCCCCEEeccCCcCCC----------------------CCCccccCCCCCCEEECCCCcccccCCCC
Q 038329 101 RFNGTIPSSIF-SLNSLQILDLSDNQLSG----------------------SFPSSIFNMSSLKVADFRKNRLSGEFPAN 157 (187)
Q Consensus 101 ~~~~~~~~~l~-~l~~L~~L~l~~n~l~~----------------------~~p~~l~~l~~L~~L~l~~n~l~g~~p~~ 157 (187)
.+.+.+|..+. .+.+|++|++++|.+++ .+|..++.+++|++|++++|.+.+.+|..
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 88877776554 56666666666665554 44455555566666666666655555544
Q ss_pred CC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 158 IP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 158 ~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+. |.+.+.+|..++.+++|+.|++++|++
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 32 556666666666666666666666654
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.76 E-value=5.2e-18 Score=144.73 Aligned_cols=136 Identities=35% Similarity=0.607 Sum_probs=117.1
Q ss_pred ccCCchhHHHHHHHHhhhcCCCCCCcccCCCCCCCCCC-----CceeeEeCC--C--CCcEEEEEecCCCccccCCcccc
Q 038329 17 NTITITTDQDALLTLKPHIAHEPGNLLAKNWTSNTSVC-----NWMGVTCDV--H--SHRVTVLNISHLNLTGSIPSQLG 87 (187)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~w~~~~~~c-----~w~g~~c~~--~--~~~l~~l~l~~~~l~~~~~~~l~ 87 (187)
...+.+.|..||..+|..+ .++. .. +|.++ +| .|.|+.|.. . ...++.|+++++.+.+.+|..+.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~-~~~~--~~-~W~g~--~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSL-GLPL--RF-GWNGD--PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred ccccCchHHHHHHHHHHhc-CCcc--cC-CCCCC--CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence 3345678899999999998 4432 12 79753 44 799999952 1 12589999999999999999999
Q ss_pred CCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCC
Q 038329 88 NLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANI 158 (187)
Q Consensus 88 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~ 158 (187)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|++|++++|+++|.+|..+
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998777654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.57 E-value=4.1e-15 Score=132.98 Aligned_cols=90 Identities=42% Similarity=0.627 Sum_probs=45.7
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
++++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 34444555554444444445555555555555555554455555555555555555555554445555555555555555
Q ss_pred CCcccccCCC
Q 038329 147 KNRLSGEFPA 156 (187)
Q Consensus 147 ~n~l~g~~p~ 156 (187)
+|.+++.+|.
T Consensus 221 ~n~l~~~~p~ 230 (968)
T PLN00113 221 YNNLSGEIPY 230 (968)
T ss_pred CCccCCcCCh
Confidence 5555444443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=9.8e-15 Score=103.64 Aligned_cols=118 Identities=34% Similarity=0.539 Sum_probs=102.3
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|-+++|+++ ..|+.+..+.+|+.|.+.+|++. .+|..++.+++|+.|+++.|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 567889999999999 77888999999999999999998 88999999999999999999998 8899999999999999
Q ss_pred CCCCcccc-cCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSG-EFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g-~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+..|++.. .+|..|+ |.| ..+|..++++++|+.|.+..|.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCch
Confidence 99999873 5676665 555 46788888888888888887753
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=4.8e-14 Score=100.14 Aligned_cols=119 Identities=32% Similarity=0.591 Sum_probs=78.2
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCC-CCCCccccCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS-GSFPSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L 143 (187)
..+++++++.+|++. .+|.++..++.|+.|.++-|++. ..|..|+.++-|+.|++.+|.+. ..+|..|..++.|+.|
T Consensus 55 l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence 445666777777766 56666666666666766666665 56666666666666666666554 3455555555555555
Q ss_pred ECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 144 DFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
.++.|.|. .+|++++ |.+. ++|..++.++.|+.|.+++|+++
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 55555554 4444443 3222 67889999999999999999864
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=3.1e-11 Score=103.42 Aligned_cols=94 Identities=29% Similarity=0.497 Sum_probs=75.5
Q ss_pred CCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC-----------
Q 038329 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP----------- 159 (187)
Q Consensus 91 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~----------- 159 (187)
.++.|++++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|++++|+++|.+|..+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 367899999999999999999999999999999999999999999999999999999999977665442
Q ss_pred -CCCCCcCchhccCC-ccCceeeeecc
Q 038329 160 -NKLPGAMQKGIGNL-TKLEKLYLGHN 184 (187)
Q Consensus 160 -n~~~~~ip~~l~~l-~~L~~L~l~~N 184 (187)
|.++|.+|..++.. .++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 55555555555432 23445555554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.10 E-value=5e-11 Score=98.52 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=51.4
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.++++.|++.+|.|...-..++..++.|+.||++.|.++....+.|..-.++++|+|++|+|+..-...|..+.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 45677777777777654455566666666666666666633334444445566666666665544444555555555555
Q ss_pred CCCCccc
Q 038329 145 FRKNRLS 151 (187)
Q Consensus 145 l~~n~l~ 151 (187)
|++|+++
T Consensus 204 LsrNrit 210 (873)
T KOG4194|consen 204 LSRNRIT 210 (873)
T ss_pred cccCccc
Confidence 5555555
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.10 E-value=1.5e-11 Score=97.59 Aligned_cols=106 Identities=36% Similarity=0.609 Sum_probs=72.9
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
+++.+++++|-+. .+|.+++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++...-|..+..|..|.+||+.
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 4555666665555 55666666666666666666665 455555555555555555566653334447778888888888
Q ss_pred CCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 147 KNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 147 ~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+|.+. .||+.++++++|+.|++.+|+|+
T Consensus 514 nNdlq-------------~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 514 NNDLQ-------------QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCchh-------------hCChhhccccceeEEEecCCccC
Confidence 88886 88889999999999999999874
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.1e-10 Score=84.30 Aligned_cols=104 Identities=31% Similarity=0.482 Sum_probs=32.4
Q ss_pred cEEEEEecCCCccccCCcccc-CCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccc-cCCCCCCEEE
Q 038329 67 RVTVLNISHLNLTGSIPSQLG-NLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSI-FNMSSLKVAD 144 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~ 144 (187)
+++.|+++++.|+ .+. .+. .+.+|+.|++++|.++ .++ .+..+..|+.|++++|.++ .+...+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 4567777777776 332 344 4667777777777776 333 4666777777777777777 343333 3467777777
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|++.. +. .+ ..+..+++|++|++.+|++
T Consensus 95 L~~N~I~~---------l~-~l-~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISD---------LN-EL-EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---S---------CC-CC-GGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCC---------hH-Hh-HHHHcCCCcceeeccCCcc
Confidence 77777751 11 11 3356677777777777765
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-11 Score=101.95 Aligned_cols=119 Identities=28% Similarity=0.299 Sum_probs=61.9
Q ss_pred EEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 68 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
++.|+++.|.|...-+..+...+.|+.|+++.|+++...+..|..+..|++|+|++|.+....-..|..+.+|+.|||++
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 44445555554433333444445555555555555544444455555555555555555533334455555566666666
Q ss_pred CcccccCCCCCC---------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 148 NRLSGEFPANIP---------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 148 n~l~g~~p~~~~---------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
|.+++.+.+.-. |++...-...+..+++|+.|||.+|.|
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 655544432110 444433344666777777777777754
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.01 E-value=3.8e-11 Score=100.19 Aligned_cols=107 Identities=29% Similarity=0.459 Sum_probs=68.0
Q ss_pred CCcEEEEEecCCCcc-ccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCc-cccCCCCCCE
Q 038329 65 SHRVTVLNISHLNLT-GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPS-SIFNMSSLKV 142 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~ 142 (187)
.++++++.++.|++. ..+|+.+..+.-|+.||+++|++. .+|..+....++..|++++|.|. .+|. .+.+++.|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 344555556666554 335555666666666666666665 56666666666666666666666 3443 3455666666
Q ss_pred EECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 143 ADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 143 L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
|||++|++. .+|+.+..+..|+.|+|++|++
T Consensus 155 LDLS~NrLe-------------~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 155 LDLSNNRLE-------------MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred hccccchhh-------------hcCHHHHHHhhhhhhhcCCChh
Confidence 666666664 6677778888888888888875
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.00 E-value=1.5e-11 Score=102.60 Aligned_cols=119 Identities=30% Similarity=0.424 Sum_probs=89.6
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..++..+|++.|++. ..|..+-.+++|+.|++++|.++ .+........+|+.|+++.|+++ .+|+.+..+++|+.|.
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 446677788888777 67777778888888888888887 55555666778888888888887 7788888888888888
Q ss_pred CCCCcccc-cCCCCCC-----------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSG-EFPANIP-----------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g-~~p~~~~-----------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+..|+++- -+|..++ |+...-+|+++..|.+|+.|.|++|++
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccce
Confidence 88887762 3555544 556667888888888888888888764
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=3.8e-10 Score=67.58 Aligned_cols=36 Identities=39% Similarity=0.581 Sum_probs=15.3
Q ss_pred CCEEeccCCcCCCCCCccccCCCCCCEEECCCCccc
Q 038329 116 LQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLS 151 (187)
Q Consensus 116 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 151 (187)
|+.|++++|+++...+..|..+++|++|++++|.++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT 38 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSES
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC
Confidence 344444444444332234444444444444444443
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=6.6e-10 Score=66.52 Aligned_cols=61 Identities=36% Similarity=0.549 Sum_probs=55.1
Q ss_pred CCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcc
Q 038329 90 SSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRL 150 (187)
Q Consensus 90 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 150 (187)
++|++|++++|.+....+..|..+++|++|++++|.+....|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999966667889999999999999999977778999999999999999975
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.87 E-value=6.6e-11 Score=93.96 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=11.1
Q ss_pred cCchhccCCccCceeeeecccC
Q 038329 165 AMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 165 ~ip~~l~~l~~L~~L~l~~N~l 186 (187)
.+|.+++++ .|+.|-+.||++
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cCCcccccc-eeeehhhcCCch
Confidence 344445555 555555555543
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3.6e-09 Score=76.49 Aligned_cols=105 Identities=28% Similarity=0.314 Sum_probs=50.7
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCccc-CCCCCCCEEeccCCcCCCCC-CccccCCCCCCE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSI-FSLNSLQILDLSDNQLSGSF-PSSIFNMSSLKV 142 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~ 142 (187)
..+++.|++++|.++ .+. .+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|++...- -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 457899999999999 444 4788999999999999998 455444 36899999999999997421 145677899999
Q ss_pred EECCCCcccccCCCCCCCCCCCcCchhccCCccCceeee
Q 038329 143 ADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYL 181 (187)
Q Consensus 143 L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l 181 (187)
|++.+|+++.. +. --.-.+..+|+|+.||-
T Consensus 118 L~L~~NPv~~~-~~--------YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVCEK-KN--------YRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGGGS-TT--------HHHHHHHH-TT-SEETT
T ss_pred eeccCCcccch-hh--------HHHHHHHHcChhheeCC
Confidence 99999999822 11 11124567889998884
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.82 E-value=1.5e-08 Score=88.18 Aligned_cols=90 Identities=29% Similarity=0.343 Sum_probs=61.8
Q ss_pred CCCEEeCcCCcccccCCcccCC-----------------CCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCccccc
Q 038329 91 SLQALDLSFNRFNGTIPSSIFS-----------------LNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGE 153 (187)
Q Consensus 91 ~L~~L~l~~n~~~~~~~~~l~~-----------------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~ 153 (187)
.|+.|++++|.++ .+|..... ..+|+.|++++|.++ .+|.. .++|+.|++++|.++ .
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 5677777777776 33321111 235677777777777 45543 256888888888887 4
Q ss_pred CCCCCC---------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 154 FPANIP---------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 154 ~p~~~~---------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+|.... |+++ .+|..+..+++|+.|+|++|+|+
T Consensus 417 IP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 417 LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 665321 5665 78999999999999999999885
No 18
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=1.1e-09 Score=84.30 Aligned_cols=80 Identities=29% Similarity=0.377 Sum_probs=40.5
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
.++.+|+++|.|+ .+..+..-++.++.|+++.|.+. .+.. +..+.+|+.|++++|.++ .+-.+-..+-+++.|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 3455666666555 44555555555666666666654 2222 555556666666666554 333333333444444444
Q ss_pred CCcc
Q 038329 147 KNRL 150 (187)
Q Consensus 147 ~n~l 150 (187)
+|.+
T Consensus 361 ~N~i 364 (490)
T KOG1259|consen 361 QNKI 364 (490)
T ss_pred hhhH
Confidence 4433
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.80 E-value=6.1e-10 Score=96.09 Aligned_cols=106 Identities=32% Similarity=0.433 Sum_probs=81.0
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.......+.++..|+.|++|+|.++ .+|..+..+..|++|....|.+. .+| .+..++.|+.+|
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 357888888888887333345777888888888888887 78888888888888888888888 777 778888999999
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeeccc
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
++.|+++.. .+|.... .++|++|||+||.
T Consensus 459 lS~N~L~~~-----------~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEV-----------TLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhh-----------hhhhhCC-CcccceeeccCCc
Confidence 999988721 1222211 2789999999985
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.79 E-value=1.6e-10 Score=99.51 Aligned_cols=107 Identities=30% Similarity=0.423 Sum_probs=82.4
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
..++.|.+.+|.++..+-+.+.++++|++|++++|++..-....+.++..|+.|++++|+++ .+|..+..+..|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 34666777778777777777777888888888888776333345667788888888888887 67777778888888888
Q ss_pred CCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
..|.+. ..| .+..++.|+.+|++.|+++
T Consensus 438 hsN~l~-------------~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 438 HSNQLL-------------SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred cCCcee-------------ech-hhhhcCcceEEecccchhh
Confidence 888876 556 6789999999999999874
No 21
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.72 E-value=1.7e-08 Score=55.93 Aligned_cols=40 Identities=38% Similarity=0.963 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCcccCCCCCC--CCCCCceeeEeC
Q 038329 22 TTDQDALLTLKPHIAHEPGNLLAKNWTSN--TSVCNWMGVTCD 62 (187)
Q Consensus 22 ~~~~~~l~~~~~~l~~~~~~~~~~~w~~~--~~~c~w~g~~c~ 62 (187)
+.|.+||++||..+..+|...+. +|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~-~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLS-SWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCT-T--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccc-cCCCcCCCCCeeeccEEeC
Confidence 57899999999999656766777 99976 799999999994
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.71 E-value=2.5e-08 Score=86.86 Aligned_cols=76 Identities=30% Similarity=0.503 Sum_probs=41.1
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
+++.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 5677777777766 4554332 34666666666655 4444332 35555555555555 3444332 345555555
Q ss_pred CCccc
Q 038329 147 KNRLS 151 (187)
Q Consensus 147 ~n~l~ 151 (187)
+|+++
T Consensus 292 ~N~Lt 296 (754)
T PRK15370 292 DNSIR 296 (754)
T ss_pred CCccc
Confidence 55554
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.67 E-value=7.1e-08 Score=84.10 Aligned_cols=80 Identities=26% Similarity=0.500 Sum_probs=47.3
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
.++.|++++|.++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4566666666666 4444332 46666666666665 4554332 35667777777666 5555443 357777777
Q ss_pred CCcccccCCC
Q 038329 147 KNRLSGEFPA 156 (187)
Q Consensus 147 ~n~l~g~~p~ 156 (187)
+|+++ .+|.
T Consensus 271 ~N~L~-~LP~ 279 (754)
T PRK15370 271 HNKIS-CLPE 279 (754)
T ss_pred CCccC-cccc
Confidence 77776 3444
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=4.7e-09 Score=82.60 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=10.1
Q ss_pred hccCCccCceeeeecccC
Q 038329 169 GIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 169 ~l~~l~~L~~L~l~~N~l 186 (187)
.+..+++|++|++++|.+
T Consensus 216 ~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 216 TLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HhcccCCCCEEecCCCcC
Confidence 344555666666666554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=1.5e-09 Score=89.52 Aligned_cols=118 Identities=29% Similarity=0.441 Sum_probs=88.1
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
...++.++++.|+++ .+|..++.|+ |+.|-+++|+++ .+|+.++.+.+|..|+.+.|.+. .+|..++.+.+|+.|+
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 445677888888877 6777776666 788888888887 67777777777888888888877 6677777777777777
Q ss_pred CCCCcccccCCCCCC----------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP----------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~----------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+.+|++. .+|+.+. |+=...||..|.+|+.|++|-|.+|+++
T Consensus 196 vrRn~l~-~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred Hhhhhhh-hCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 7777775 5554432 3233478889999999999999999874
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1e-08 Score=79.19 Aligned_cols=107 Identities=28% Similarity=0.365 Sum_probs=86.9
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.+.++.|++++|++. .+.. +..+.+|+.||+++|.++ .+...-..+.+.+.|.+++|.+.. + ..+..+-+|..||
T Consensus 306 ~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLD 380 (490)
T ss_pred ccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheecc
Confidence 568999999999998 3333 888999999999999998 555555678999999999999883 3 5678888999999
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|++.. + .--..++++|.|+.+.|.+|+++
T Consensus 381 l~~N~Ie~-l----------deV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 381 LSSNQIEE-L----------DEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ccccchhh-H----------HHhcccccccHHHHHhhcCCCcc
Confidence 99999961 1 11235789999999999999874
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.57 E-value=2.1e-07 Score=81.15 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=18.4
Q ss_pred CCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccc
Q 038329 115 SLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSG 152 (187)
Q Consensus 115 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g 152 (187)
.|+.|++++|+++ .+|. .+++|+.|++++|++++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCcccc
Confidence 3444555555554 3333 12557777777777763
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.57 E-value=9.9e-09 Score=80.77 Aligned_cols=115 Identities=24% Similarity=0.273 Sum_probs=82.8
Q ss_pred CCcEEEEEecCCCccccCCccccCCCC---CCEEeCcCCcccc----cCCcccCCC-CCCCEEeccCCcCCCC----CCc
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSS---LQALDLSFNRFNG----TIPSSIFSL-NSLQILDLSDNQLSGS----FPS 132 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~---L~~L~l~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~p~ 132 (187)
..+++.++++++.+.+..+..+..+.. |+.|++++|.+.+ .+...+..+ .+|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 468999999999887555555544544 9999999998873 233345566 8899999999998842 334
Q ss_pred cccCCCCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 133 SIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 133 ~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
.+..+++|++|++++|.+++... ..++..+..+++|+.|++++|.++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~--------~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGI--------RALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHH--------HHHHHHHHhCCCCCEEeccCCccC
Confidence 56667889999999998873211 133445566789999999999763
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=4.8e-07 Score=82.91 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=58.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++.++.+. .++..+..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 45667777777666 455556667777777777665443554 3666777777777776655567777777777777777
Q ss_pred CCCcccccCCC
Q 038329 146 RKNRLSGEFPA 156 (187)
Q Consensus 146 ~~n~l~g~~p~ 156 (187)
++|.....+|.
T Consensus 689 ~~c~~L~~Lp~ 699 (1153)
T PLN03210 689 SRCENLEILPT 699 (1153)
T ss_pred CCCCCcCccCC
Confidence 77654445554
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=3e-07 Score=84.23 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=49.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
..++.|++++|...+.+|..+..+++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.. .++|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 356677777776666677777777777777777765444555544 5666666666665433333332 245566666
Q ss_pred CCCccc
Q 038329 146 RKNRLS 151 (187)
Q Consensus 146 ~~n~l~ 151 (187)
++|.++
T Consensus 854 s~n~i~ 859 (1153)
T PLN03210 854 SRTGIE 859 (1153)
T ss_pred CCCCCc
Confidence 666655
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.49 E-value=8.6e-09 Score=81.85 Aligned_cols=86 Identities=22% Similarity=0.254 Sum_probs=64.8
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccC-CcCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSD-NQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~ 144 (187)
...+.+++..|+|+...+..|..++.|+.||+++|.|+..-|..|..+.+|..|-+-+ |+|+......|..+.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3567888888888855566788888888888888888877788888887777765544 788744445677777777777
Q ss_pred CCCCccc
Q 038329 145 FRKNRLS 151 (187)
Q Consensus 145 l~~n~l~ 151 (187)
+.-|++.
T Consensus 147 lNan~i~ 153 (498)
T KOG4237|consen 147 LNANHIN 153 (498)
T ss_pred cChhhhc
Confidence 7777665
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.45 E-value=4.9e-08 Score=77.65 Aligned_cols=90 Identities=23% Similarity=0.224 Sum_probs=71.2
Q ss_pred cccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCC
Q 038329 85 QLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPG 164 (187)
Q Consensus 85 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~ 164 (187)
.|.++++|++|++++|.++..-+..|..+..+++|.+..|++..+-...|.++..|+.|+|.+|+++-.
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~----------- 337 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV----------- 337 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE-----------
Confidence 478888899999999998877788888888899999988888866666788888888899998888732
Q ss_pred cCchhccCCccCceeeeecccC
Q 038329 165 AMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 165 ~ip~~l~~l~~L~~L~l~~N~l 186 (187)
-|..|..+.+|..|.|-.|++
T Consensus 338 -~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 338 -APGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred -ecccccccceeeeeehccCcc
Confidence 334456677788888777765
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=8.4e-08 Score=78.07 Aligned_cols=86 Identities=38% Similarity=0.615 Sum_probs=57.6
Q ss_pred cEEEEEecCCCccccCCccccCCC-CCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLS-SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++.+++.++.+. .+++....+. .|+.|++++|.+. .+|..+..++.|+.|++++|.+. .+|.....++.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 4677777777777 5555555553 7777777777776 55555667777777777777777 55555446667777777
Q ss_pred CCCcccccCCC
Q 038329 146 RKNRLSGEFPA 156 (187)
Q Consensus 146 ~~n~l~g~~p~ 156 (187)
++|+++ .+|.
T Consensus 194 s~N~i~-~l~~ 203 (394)
T COG4886 194 SGNKIS-DLPP 203 (394)
T ss_pred cCCccc-cCch
Confidence 777776 4444
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.40 E-value=3.3e-07 Score=50.92 Aligned_cols=37 Identities=32% Similarity=0.612 Sum_probs=27.9
Q ss_pred CCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCccc
Q 038329 114 NSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLS 151 (187)
Q Consensus 114 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 151 (187)
++|++|++++|+++ .+|..+..|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36788888888888 56666888888888888888886
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.37 E-value=1.9e-07 Score=75.94 Aligned_cols=79 Identities=41% Similarity=0.499 Sum_probs=51.7
Q ss_pred EEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCC-CCCEEeccCCcCCCCCCccccCCCCCCEEECCCC
Q 038329 70 VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLN-SLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKN 148 (187)
Q Consensus 70 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 148 (187)
.++...+.+. .....+..++.++.|++..|.++ .+++....+. +|+.|++++|.+. .+|..+..++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555543 12223445566777777777777 5666555663 7777777777777 55566777777777777777
Q ss_pred ccc
Q 038329 149 RLS 151 (187)
Q Consensus 149 ~l~ 151 (187)
+++
T Consensus 174 ~l~ 176 (394)
T COG4886 174 DLS 176 (394)
T ss_pred hhh
Confidence 776
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=3e-08 Score=84.26 Aligned_cols=106 Identities=32% Similarity=0.410 Sum_probs=79.0
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
...++.|++++|++.. .. .+..++.|++||++.|.+. .+|.--..-..|+.|.+.+|.++ .+ ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence 4578899999999883 33 5788899999999999987 55532222235999999999888 33 4578889999999
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++.|-+.+. +.- ..++.+..|+.|+|.||++
T Consensus 261 lsyNll~~h---------seL--~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLSEH---------SEL--EPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhhcc---------hhh--hHHHHHHHHHHHhhcCCcc
Confidence 999988732 111 1256788899999999975
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.24 E-value=4.5e-07 Score=80.46 Aligned_cols=105 Identities=28% Similarity=0.270 Sum_probs=83.3
Q ss_pred CcEEEEEecCCC--ccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 038329 66 HRVTVLNISHLN--LTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 66 ~~l~~l~l~~~~--l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 143 (187)
+.+++|-+..+. +.......|..++.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..+.++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 357777777775 44222334778999999999998887799999999999999999999998 889999999999999
Q ss_pred ECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeec
Q 038329 144 DFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGH 183 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~ 183 (187)
++..+.... .+|.....+.+|++|.+..
T Consensus 624 nl~~~~~l~------------~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLE------------SIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccc------------cccchhhhcccccEEEeec
Confidence 999877542 2244456688898888754
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=2.8e-08 Score=84.46 Aligned_cols=102 Identities=32% Similarity=0.403 Sum_probs=84.4
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
.+...+++.|.+. ....++.-++.++.|++++|++.... .+..+++|++|||++|.+. .+|..-..-..|+.|+++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4677888888887 67778888999999999999998543 7889999999999999999 777644333559999999
Q ss_pred CCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 147 KNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 147 ~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+|-++ + + .++.++.+|+.||+++|.|
T Consensus 241 nN~l~-t--------L-----~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 241 NNALT-T--------L-----RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred ccHHH-h--------h-----hhHHhhhhhhccchhHhhh
Confidence 99987 1 1 2368899999999999976
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=1.8e-06 Score=47.90 Aligned_cols=36 Identities=39% Similarity=0.643 Sum_probs=22.6
Q ss_pred CCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCC
Q 038329 91 SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127 (187)
Q Consensus 91 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 127 (187)
+|++|++++|.++ .+|+.+..+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666777777766 45555666777777777776665
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=8.9e-08 Score=65.96 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=56.2
Q ss_pred CcEEEEEecCCCccccCCccccC-CCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGN-LSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
-+++.+++++|.+. ..|+.|.. ++.++.|++++|.++ .+|..+..++.|+.|++..|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 35666777777776 45554433 346777777777776 66666777777777777777776 5566666677777777
Q ss_pred CCCCccc
Q 038329 145 FRKNRLS 151 (187)
Q Consensus 145 l~~n~l~ 151 (187)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 7777665
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.08 E-value=8.4e-08 Score=79.49 Aligned_cols=113 Identities=33% Similarity=0.534 Sum_probs=64.9
Q ss_pred EEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 68 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
.+.++++.|.+. .+|..++.+..|+.+.+..|.+- .+|..+.++..|.+|+++.|+++ .+|..+..|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 345666666665 55555555555555555555554 45555555555666666666555 5555555544 55555555
Q ss_pred CcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 148 NRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 148 n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
|+++ .+|..+. |++ ..+|..++.+.+|+.|.+..|++
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHL 201 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhh
Confidence 5554 3333332 222 25667777788888887777654
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=1.7e-06 Score=71.05 Aligned_cols=103 Identities=32% Similarity=0.477 Sum_probs=52.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
..++.+++..|.+. .+...+..+++|++|++++|.++... .+..+..|+.|++++|.++.. ..+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 34555555555555 22222445555666666666654221 234445556666666655522 33444555666666
Q ss_pred CCCcccccCCCCCCCCCCCcCchh-ccCCccCceeeeecccC
Q 038329 146 RKNRLSGEFPANIPNKLPGAMQKG-IGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g~~p~~~~n~~~~~ip~~-l~~l~~L~~L~l~~N~l 186 (187)
++|.+. .+... +..+.+++.+++.+|.+
T Consensus 170 ~~n~i~-------------~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 170 SYNRIV-------------DIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred Ccchhh-------------hhhhhhhhhccchHHHhccCCch
Confidence 666554 11111 34555666666666543
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=4.6e-07 Score=62.50 Aligned_cols=103 Identities=27% Similarity=0.366 Sum_probs=74.3
Q ss_pred cEEEEEecCCCccccCC---ccccCCCCCCEEeCcCCcccccCCcccCC-CCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 038329 67 RVTVLNISHLNLTGSIP---SQLGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQLSGSFPSSIFNMSSLKV 142 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 142 (187)
..-.++++.+.+- .++ ..+.....|+.+++++|.+. .+|+.|.. ++.++.+++++|.++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3445677777654 233 34556677888899999998 66666654 468899999999998 78888999999999
Q ss_pred EECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeeccc
Q 038329 143 ADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 143 L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
++++.|++. ..|..+..+.++..||..+|.
T Consensus 105 lNl~~N~l~-------------~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 105 LNLRFNPLN-------------AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccccCccc-------------cchHHHHHHHhHHHhcCCCCc
Confidence 999999997 333444446666666666554
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=3.3e-06 Score=69.35 Aligned_cols=104 Identities=32% Similarity=0.422 Sum_probs=81.2
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
..+..+.++.|.+. .+-..+..+++|+.+++.+|.+. .+...+..+.+|++|++++|.|+.. ..+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 34556667777776 34455788999999999999998 5554477899999999999999954 45677888999999
Q ss_pred CCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
.+|.++ .+ ..+..++.|+.+++++|.++
T Consensus 148 ~~N~i~-~~-------------~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 148 SGNLIS-DI-------------SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccCcch-hc-------------cCCccchhhhcccCCcchhh
Confidence 999997 21 12455889999999999763
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=2.3e-05 Score=57.46 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCC--ccccCCCCCCEEE
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFP--SSIFNMSSLKVAD 144 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~ 144 (187)
....+|+++|.+. .++ .|..++.|.+|.++.|+++...|.--..+++|+.|.+.+|.+. .+. ..+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 4568999999886 333 4778899999999999999444433345678999999999876 221 3467789999999
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeec
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGH 183 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~ 183 (187)
+-+|+.+.. +. . --=.+..+|+|++||++.
T Consensus 120 ll~Npv~~k-~~-Y-------R~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHK-KN-Y-------RLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcc-cC-c-------eeEEEEecCcceEeehhh
Confidence 999998721 10 0 000256789999999764
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3.5e-06 Score=67.98 Aligned_cols=114 Identities=22% Similarity=0.216 Sum_probs=54.9
Q ss_pred CcEEEEEecCCCcccc-CCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCC--ccccCCCCCCE
Q 038329 66 HRVTVLNISHLNLTGS-IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFP--SSIFNMSSLKV 142 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~ 142 (187)
.+++.|.++.|+++-. +-..+..+++|+.|++..|..-.........+..|+.|+|++|.+- ..+ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 4455555555555411 1122334455555555555321121222233455666666666554 222 23444555555
Q ss_pred EECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 143 ADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 143 L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
|+++.+.+... +.+.++.-.-...+++|++|++..|++
T Consensus 276 Lnls~tgi~si------~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 276 LNLSSTGIASI------AEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhccccCcchh------cCCCccchhhhcccccceeeecccCcc
Confidence 55555555421 111122222245678888888888876
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.81 E-value=1.4e-05 Score=71.15 Aligned_cols=104 Identities=28% Similarity=0.318 Sum_probs=81.8
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCc--ccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNR--FNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.++.+.+.++.+. .++... ..+.|++|-+.+|. +.......|..++.|+.||+++|.=.+.+|..++.+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4566666666665 333332 33468899999886 4433344477899999999999877679999999999999999
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeeccc
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
+++..+. .+|..++++..|.+|++..+.
T Consensus 602 L~~t~I~-------------~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 602 LSDTGIS-------------HLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred ccCCCcc-------------ccchHHHHHHhhheecccccc
Confidence 9999997 788889999999999998754
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00018 Score=52.85 Aligned_cols=103 Identities=27% Similarity=0.351 Sum_probs=72.7
Q ss_pred EEEEecCCCccccCCccccC-CCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 69 TVLNISHLNLTGSIPSQLGN-LSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
+.+++++.++. .+- .++. +.+...+|+++|.+- --..|..+..|..|.+++|+|+..-|.--.-+++|..|.+.+
T Consensus 22 ~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-chh-hccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 44566665543 111 1222 346778999999985 334578899999999999999966665555568899999999
Q ss_pred CcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 148 NRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 148 n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
|++. . + |.+ ..+..+++|++|.+-+|++
T Consensus 98 Nsi~-~--------l-~dl-~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 98 NSIQ-E--------L-GDL-DPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cchh-h--------h-hhc-chhccCCccceeeecCCch
Confidence 9997 1 1 111 1267789999999988875
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=8.3e-05 Score=56.39 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=56.9
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCC--cccccCCcccCCCCCCCEEeccCCcCCCCCCcc---ccCCCCC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFN--RFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSS---IFNMSSL 140 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L 140 (187)
..+..+.+.+.+++ .+ ..|..|+.|+.|.++.| ++.+.++.....+++|+++++++|++.- +.. +..+.+|
T Consensus 43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 34555666666665 22 24667888999999999 6665566555667999999999998872 233 3445667
Q ss_pred CEEECCCCccc
Q 038329 141 KVADFRKNRLS 151 (187)
Q Consensus 141 ~~L~l~~n~l~ 151 (187)
..|++..|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 78888887766
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.29 E-value=1.8e-05 Score=62.32 Aligned_cols=112 Identities=24% Similarity=0.301 Sum_probs=62.2
Q ss_pred cEEEEEecCCCccc----cCCccccCCCCCCEEeCcCCccccc----CCcccCCCCCCCEEeccCCcCCCCCCccc----
Q 038329 67 RVTVLNISHLNLTG----SIPSQLGNLSSLQALDLSFNRFNGT----IPSSIFSLNSLQILDLSDNQLSGSFPSSI---- 134 (187)
Q Consensus 67 ~l~~l~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~l---- 134 (187)
.+..+.+..|+|.. .+...|..+++|++||+.+|.++-. +...+..+++|+.|+++++.+...-...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 45555555555541 1223456667777777777776532 23345556677777777776653322211
Q ss_pred -cCCCCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 135 -FNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 135 -~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
...++|+.+.+.+|.++..-- ..+-..+...+.|..|+|++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~--------~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAA--------LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHH--------HHHHHHHhcchhhHHhcCCcccc
Confidence 224667777777777652110 01122344567777888888765
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.13 E-value=0.00024 Score=61.95 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCcEEEEEecCCCcccc-CCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCC-CCCccccCCCCCCE
Q 038329 65 SHRVTVLNISHLNLTGS-IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG-SFPSSIFNMSSLKV 142 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~ 142 (187)
.+.+++|.+.+..+... .-.....+++|..||+|+..++. + ..++.+.+|+.|.+.+=.+.. ..-..+..|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 46788888888776522 22334567889999999988873 3 667888888888777666552 11135677899999
Q ss_pred EECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 143 ADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 143 L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
||+|....... +.-+ ...-+--..+|+|+.||.+++.+
T Consensus 225 LDIS~~~~~~~-~~ii-----~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 225 LDISRDKNNDD-TKII-----EQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred eeccccccccc-hHHH-----HHHHHhcccCccccEEecCCcch
Confidence 99998766521 1000 00011123488999999998754
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.0004 Score=52.78 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=61.7
Q ss_pred CCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCC--cCCCCCCccccCCCCCCEEECCCCcccccCCCCCC
Q 038329 82 IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDN--QLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP 159 (187)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~ 159 (187)
+..-.-.+..|+.+.+.+..++ . -..+..+++|+.|.++.| .+.+.++.....+++|+++++++|+++- +..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl- 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL- 109 (260)
T ss_pred cccccccccchhhhhhhcccee-e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc-
Confidence 3333444556666666666665 2 234667899999999999 6666666666777999999999999962 2211
Q ss_pred CCCCCcCchhccCCccCceeeeeccc
Q 038329 160 NKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 160 n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
..+..+.+|..||+..+.
T Consensus 110 --------~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 110 --------RPLKELENLKSLDLFNCS 127 (260)
T ss_pred --------chhhhhcchhhhhcccCC
Confidence 124566677777777654
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00016 Score=58.64 Aligned_cols=110 Identities=21% Similarity=0.244 Sum_probs=71.4
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccC-CcccCCCCCCCEEeccCCcCCCC-CCcc-----ccCCC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTI-PSSIFSLNSLQILDLSDNQLSGS-FPSS-----IFNMS 138 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~-~p~~-----l~~l~ 138 (187)
+.+..|++..|........+...+..|+.|+|++|.+-... -...+.++.|..|+++.+.++.. .|+. ...++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 46788999988532233334566788999999999886321 24567788899999999887732 2222 24468
Q ss_pred CCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 139 SLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 139 ~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+|++|++..|++. ..+. -..+..+++|+.|.+-.|++
T Consensus 302 kL~~L~i~~N~I~-~w~s----------l~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 302 KLEYLNISENNIR-DWRS----------LNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cceeeecccCccc-cccc----------cchhhccchhhhhhcccccc
Confidence 8999999999985 1110 01234455666666555554
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00024 Score=61.91 Aligned_cols=107 Identities=25% Similarity=0.319 Sum_probs=75.1
Q ss_pred CcEEEEEecCCCcc-ccCCccc-cCCCCCCEEeCcCCcccc-cCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 038329 66 HRVTVLNISHLNLT-GSIPSQL-GNLSSLQALDLSFNRFNG-TIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKV 142 (187)
Q Consensus 66 ~~l~~l~l~~~~l~-~~~~~~l-~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 142 (187)
.+++.|++++.... ...|..+ ..||+|+.|.+++-.+.. ....-..++++|..||+++..++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 35778888875533 2233333 347899999999877642 2334456789999999999998844 77899999999
Q ss_pred EECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeeccc
Q 038329 143 ADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 143 L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
|.+.+=.+.. ...-..+.+|++|++||+|...
T Consensus 200 L~mrnLe~e~-----------~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFES-----------YQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCc-----------hhhHHHHhcccCCCeeeccccc
Confidence 9887766641 1112346789999999998754
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.72 E-value=0.00034 Score=55.27 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=74.3
Q ss_pred CCcEEEEEecCCCcccc----CCccccCCCCCCEEeCcCCccccc----CCcccCCCCCCCEEeccCCcCCCC----CCc
Q 038329 65 SHRVTVLNISHLNLTGS----IPSQLGNLSSLQALDLSFNRFNGT----IPSSIFSLNSLQILDLSDNQLSGS----FPS 132 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~ 132 (187)
...++++....|.+... +...|...+.|+.+.+..|.+... +...+..+++|+.|++.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 34677777777776522 223455567788888888776411 234566788888888888887732 234
Q ss_pred cccCCCCCCEEECCCCcccccCCCCCCCCCCCcCchhc-cCCccCceeeeecccCC
Q 038329 133 SIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGI-GNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 133 ~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l-~~l~~L~~L~l~~N~l~ 187 (187)
.+..++.|+.++++.+.+... ..-.+-..+ ...++|++|.|.+|.++
T Consensus 236 aL~s~~~L~El~l~dcll~~~--------Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENE--------GAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred Hhcccchheeecccccccccc--------cHHHHHHHHhccCCCCceeccCcchhH
Confidence 566677888888888887621 111122222 24678999999998764
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.57 E-value=0.006 Score=49.97 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=51.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCC-cCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDN-QLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~ 144 (187)
.+++.|++++|.+. .+| .+ -.+|+.|.++++.--..+|..+ ..+|+.|.+++| .+. .+|. .|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 45789999999887 555 22 2369999998744333566544 368999999988 454 4554 356666
Q ss_pred CCCCccc--ccCCCCC
Q 038329 145 FRKNRLS--GEFPANI 158 (187)
Q Consensus 145 l~~n~l~--g~~p~~~ 158 (187)
+..+... +.+|..+
T Consensus 119 L~~n~~~~L~~LPssL 134 (426)
T PRK15386 119 IKGSATDSIKNVPNGL 134 (426)
T ss_pred eCCCCCcccccCcchH
Confidence 6655432 3455443
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=4.9e-05 Score=58.54 Aligned_cols=104 Identities=25% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCC--ccccCCCCCCE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFP--SSIFNMSSLKV 142 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~ 142 (187)
...|+.|++-++++... ....+++.|++|.|+-|.++. + ..+..++.|++|+|..|.|.. +- .-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 45677888888887732 124578889999999999973 3 236778899999999998873 32 23677889999
Q ss_pred EECCCCcccccCCCCCCCCCCCcCchhccCCccCceee
Q 038329 143 ADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLY 180 (187)
Q Consensus 143 L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~ 180 (187)
|.|..|+-.|..+.... -..+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR-------~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYR-------RKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHH-------HHHHHHcccchhcc
Confidence 99999988876554321 11345567777665
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0011 Score=51.73 Aligned_cols=70 Identities=29% Similarity=0.282 Sum_probs=35.0
Q ss_pred CceeeEeC-CCCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccC-CcccCCCCCCCEEeccCC
Q 038329 55 NWMGVTCD-VHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTI-PSSIFSLNSLQILDLSDN 124 (187)
Q Consensus 55 ~w~g~~c~-~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n 124 (187)
.|..+.|. ...++++.|+++.|.+...+...-..+.+|++|.+.+..+.... ...+..++.++.|.++.|
T Consensus 85 dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 45555554 33556666666666665322211124455666666655554332 223344555555555555
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.00 E-value=0.021 Score=46.90 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=29.6
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCC-cccccCCcccCCCCCCCEEeccCCc
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFN-RFNGTIPSSIFSLNSLQILDLSDNQ 125 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~ 125 (187)
..+|+.|.++++.--..+|..+. .+|+.|.+++| .+. .+|. +|+.|.+..+.
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~ 123 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSA 123 (426)
T ss_pred CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCC
Confidence 34688888887544335555442 46788888877 443 3443 34444554443
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0031 Score=29.25 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=4.9
Q ss_pred CCEEECCCCccc
Q 038329 140 LKVADFRKNRLS 151 (187)
Q Consensus 140 L~~L~l~~n~l~ 151 (187)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.0026 Score=49.69 Aligned_cols=85 Identities=26% Similarity=0.332 Sum_probs=48.9
Q ss_pred CcEEEEEecCCCcc--ccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCC-CCccccCCCCCCE
Q 038329 66 HRVTVLNISHLNLT--GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGS-FPSSIFNMSSLKV 142 (187)
Q Consensus 66 ~~l~~l~l~~~~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~ 142 (187)
.+|+.+|+.+|.++ ..+..-+.+++.|++|+++.|.+...+..--....+|+.|-+.+..+... .-..+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 35667777777766 22333456677777777777777644322113456667776666655422 2233455666677
Q ss_pred EECCCCcc
Q 038329 143 ADFRKNRL 150 (187)
Q Consensus 143 L~l~~n~l 150 (187)
|.++.|++
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 77776644
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0043 Score=28.76 Aligned_cols=11 Identities=55% Similarity=0.788 Sum_probs=4.5
Q ss_pred CEEeccCCcCC
Q 038329 117 QILDLSDNQLS 127 (187)
Q Consensus 117 ~~L~l~~n~l~ 127 (187)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.66 E-value=0.0044 Score=47.90 Aligned_cols=102 Identities=28% Similarity=0.282 Sum_probs=61.8
Q ss_pred cccCCCCCCEEeCcCCcccccCCcc----cCCCCCCCEEeccCCcCCCCCCccc-------------cCCCCCCEEECCC
Q 038329 85 QLGNLSSLQALDLSFNRFNGTIPSS----IFSLNSLQILDLSDNQLSGSFPSSI-------------FNMSSLKVADFRK 147 (187)
Q Consensus 85 ~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~l-------------~~l~~L~~L~l~~ 147 (187)
.+.+++.|+..++|+|.|....|+. ++.-+.|.+|.+++|.+....-.-+ ..-+.|+..+..+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4566788888888888887665543 3445778888888887652211112 2236788888888
Q ss_pred CcccccCCCCC-----------C---CCCCCcCch--------hccCCccCceeeeecccCC
Q 038329 148 NRLSGEFPANI-----------P---NKLPGAMQK--------GIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 148 n~l~g~~p~~~-----------~---n~~~~~ip~--------~l~~l~~L~~L~l~~N~l~ 187 (187)
|++- ..+... . -.-.|.-|. .+..+.+|++||++.|-|+
T Consensus 167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 7764 111110 0 011133444 3456788999999998764
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=8e-05 Score=57.91 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=72.3
Q ss_pred cEEEEEecCCCccc-cCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCc-CCCC-CCccccCCCCCCEE
Q 038329 67 RVTVLNISHLNLTG-SIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQ-LSGS-FPSSIFNMSSLKVA 143 (187)
Q Consensus 67 ~l~~l~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~p~~l~~l~~L~~L 143 (187)
+++.+|+++..++. .+-.-+..+..|+.|.+.++++.+.+-..+..-..|+.|+++++. ++.. +.-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57778888777662 223345667788888888888888777778888888888887763 2211 11235667778888
Q ss_pred ECCCCcccccCCC--------CCC---------CCCCCcCchhccCCccCceeeeecc
Q 038329 144 DFRKNRLSGEFPA--------NIP---------NKLPGAMQKGIGNLTKLEKLYLGHN 184 (187)
Q Consensus 144 ~l~~n~l~g~~p~--------~~~---------n~~~~~ip~~l~~l~~L~~L~l~~N 184 (187)
+++-+.+....-. .+. |-+...+..-...++.|..|||+.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 8877765422110 000 2112222223356788888888765
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.31 E-value=0.00015 Score=54.60 Aligned_cols=84 Identities=25% Similarity=0.234 Sum_probs=57.0
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.||++.|.+. .+...|..++.|..|+++.|.+. -.|..+..+..+..+++..|..+ ..|..++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 356777777777665 34444556666777777777776 56666666667777777777766 6677777777777777
Q ss_pred CCCCccc
Q 038329 145 FRKNRLS 151 (187)
Q Consensus 145 l~~n~l~ 151 (187)
+-+|.|.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7766654
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.86 E-value=0.015 Score=45.11 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=62.6
Q ss_pred CcEEEEEecCCCcccc----CCccccCCCCCCEEeCcCCccc---ccCC-------cccCCCCCCCEEeccCCcCCCCCC
Q 038329 66 HRVTVLNISHLNLTGS----IPSQLGNLSSLQALDLSFNRFN---GTIP-------SSIFSLNSLQILDLSDNQLSGSFP 131 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~---~~~~-------~~l~~l~~L~~L~l~~n~l~~~~p 131 (187)
..++.+++++|.+... +...+..-.+|+...+++-... ..++ +.+-.+++|+..++++|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4578999999998743 3334556677888877764432 1122 345578999999999999987777
Q ss_pred cc----ccCCCCCCEEECCCCccc
Q 038329 132 SS----IFNMSSLKVADFRKNRLS 151 (187)
Q Consensus 132 ~~----l~~l~~L~~L~l~~n~l~ 151 (187)
.. +..-+.|.+|.+++|.+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC
Confidence 54 455688999999999874
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.17 E-value=0.3 Score=32.77 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=41.3
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
+++.+.+.. .+...-...|..++.|+.+.+.++ +.......|..+..++.+.+.. .+.......|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 466666664 444333445677777888887764 5434445566666788887765 3332334556667788888876
Q ss_pred CC
Q 038329 147 KN 148 (187)
Q Consensus 147 ~n 148 (187)
.+
T Consensus 90 ~~ 91 (129)
T PF13306_consen 90 SN 91 (129)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.81 E-value=0.00096 Score=50.33 Aligned_cols=87 Identities=24% Similarity=0.227 Sum_probs=68.7
Q ss_pred cccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCC
Q 038329 85 QLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPG 164 (187)
Q Consensus 85 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~ 164 (187)
++..+...+.||++.|++. .....|+.++.|..|+++.|.+. ..|..++.+..++++++..|...
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~------------- 101 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS------------- 101 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-------------
Confidence 4555667788899988886 55666777888888899988888 77888888888888888888886
Q ss_pred cCchhccCCccCceeeeecccC
Q 038329 165 AMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 165 ~ip~~l~~l~~L~~L~l~~N~l 186 (187)
..|.+++..+.++++++.+|.|
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hCCccccccCCcchhhhccCcc
Confidence 5666778888888888877764
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=0.002 Score=49.84 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=61.9
Q ss_pred CCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCCcCch
Q 038329 89 LSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQK 168 (187)
Q Consensus 89 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~ 168 (187)
+...+.|+.-++.+++. .-...++.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|.. +- + -.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ld---------E-L~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LD---------E-LE 82 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HH---------H-HH
Confidence 34556777777777632 2245789999999999999954 567899999999999999861 11 1 12
Q ss_pred hccCCccCceeeeeccc
Q 038329 169 GIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 169 ~l~~l~~L~~L~l~~N~ 185 (187)
.+.++++|+.|.|..|+
T Consensus 83 YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHhcCchhhhHhhccCC
Confidence 46789999999998886
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.59 E-value=0.048 Score=23.48 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=3.0
Q ss_pred CEEECCCCc
Q 038329 141 KVADFRKNR 149 (187)
Q Consensus 141 ~~L~l~~n~ 149 (187)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.23 E-value=0.42 Score=32.06 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=38.5
Q ss_pred cccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 85 QLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 85 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
.|..+..|+.+.+.. .+.......|..+.+|+.+.+..+ +...-...|..+++|+.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 467788899999885 565455667888889999999885 6644456788888899999965
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.78 E-value=0.089 Score=25.11 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=9.4
Q ss_pred CCCCEEECCCCccc
Q 038329 138 SSLKVADFRKNRLS 151 (187)
Q Consensus 138 ~~L~~L~l~~n~l~ 151 (187)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 55667777777665
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.78 E-value=0.089 Score=25.11 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=9.4
Q ss_pred CCCCEEECCCCccc
Q 038329 138 SSLKVADFRKNRLS 151 (187)
Q Consensus 138 ~~L~~L~l~~n~l~ 151 (187)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 55667777777665
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.19 E-value=0.21 Score=24.09 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=6.8
Q ss_pred CCCCEEECCCCcc
Q 038329 138 SSLKVADFRKNRL 150 (187)
Q Consensus 138 ~~L~~L~l~~n~l 150 (187)
++|+.|++++|++
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.35 E-value=0.12 Score=24.11 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=4.8
Q ss_pred cCceeeeecccC
Q 038329 175 KLEKLYLGHNRL 186 (187)
Q Consensus 175 ~L~~L~l~~N~l 186 (187)
+|+.|+|++|+|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 445555555443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.89 E-value=0.049 Score=40.30 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=53.1
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCccccc-CCcccC-CCCCCCEEeccCC-cCCCCCCccccCCCCCCEE
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGT-IPSSIF-SLNSLQILDLSDN-QLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~-~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L 143 (187)
.|+.++.++..|...--..+..++.++.|.+..+.--+. .-+.++ -.++|+.|++++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 478888888877655445677888888888877654211 111122 3478899999876 4554333566777778777
Q ss_pred ECCCC
Q 038329 144 DFRKN 148 (187)
Q Consensus 144 ~l~~n 148 (187)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 76543
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.32 E-value=0.41 Score=23.37 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=6.9
Q ss_pred cCceeeeecccC
Q 038329 175 KLEKLYLGHNRL 186 (187)
Q Consensus 175 ~L~~L~l~~N~l 186 (187)
+|++|||++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455666666554
No 78
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=0.13 Score=40.55 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=30.1
Q ss_pred CCCCCEEeccCCc-CCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeec
Q 038329 113 LNSLQILDLSDNQ-LSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGH 183 (187)
Q Consensus 113 l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~ 183 (187)
+++|.+||++++. ++......|..++.|++|.++++-. .+|..+ -.+...++|.+||+.+
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~---------~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETL---------LELNSKPSLVYLDVFG 372 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHe---------eeeccCcceEEEEecc
Confidence 4556666665553 2322233455555666666655532 122211 1345667777777654
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.01 E-value=1.3 Score=21.30 Aligned_cols=13 Identities=54% Similarity=0.754 Sum_probs=6.1
Q ss_pred CCCEEeccCCcCC
Q 038329 115 SLQILDLSDNQLS 127 (187)
Q Consensus 115 ~L~~L~l~~n~l~ 127 (187)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444445554444
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=71.34 E-value=0.92 Score=37.49 Aligned_cols=88 Identities=19% Similarity=0.092 Sum_probs=38.9
Q ss_pred ccCCCCCCEEeCcCC-cccccC----CcccCCCCCCCEEeccCCc-CCCCCCcccc-CCCCCCEEECCCCc-ccccCCCC
Q 038329 86 LGNLSSLQALDLSFN-RFNGTI----PSSIFSLNSLQILDLSDNQ-LSGSFPSSIF-NMSSLKVADFRKNR-LSGEFPAN 157 (187)
Q Consensus 86 l~~l~~L~~L~l~~n-~~~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~p~~l~-~l~~L~~L~l~~n~-l~g~~p~~ 157 (187)
....+.|+.|+++++ ...... ......+.+|+.|+++++. ++...-..+. .+++|+.|.+.++. ++..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~---- 285 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE---- 285 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh----
Confidence 344556666666652 110011 1122334566666666655 3322111222 24566666655444 3311
Q ss_pred CCCCCCCcCchhccCCccCceeeeecc
Q 038329 158 IPNKLPGAMQKGIGNLTKLEKLYLGHN 184 (187)
Q Consensus 158 ~~n~~~~~ip~~l~~l~~L~~L~l~~N 184 (187)
.+-.....++.|+.|+++++
T Consensus 286 -------gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 286 -------GLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred -------HHHHHHHhcCcccEEeeecC
Confidence 11222344566666666644
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.43 E-value=13 Score=38.07 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=21.6
Q ss_pred eCcCCcccccCCcccCCCCCCCEEeccCCcCC
Q 038329 96 DLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS 127 (187)
Q Consensus 96 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 127 (187)
||++|+|....+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777777444556666777778877777553
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.15 E-value=21 Score=16.61 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=7.9
Q ss_pred CCCCEEECCCCc
Q 038329 138 SSLKVADFRKNR 149 (187)
Q Consensus 138 ~~L~~L~l~~n~ 149 (187)
++|++|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777664
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=39.94 E-value=0.78 Score=38.72 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 138 SSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 138 ~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
..++++++..|+++..-. ..+...+..++.++.+.++.|.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~--------~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGV--------RDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccch--------HHHHHHHhhhHHHHHhhcccCcc
Confidence 445666666666652221 23344555666777777777765
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.17 E-value=16 Score=31.46 Aligned_cols=13 Identities=23% Similarity=0.301 Sum_probs=6.6
Q ss_pred cEEEEEecCCCcc
Q 038329 67 RVTVLNISHLNLT 79 (187)
Q Consensus 67 ~l~~l~l~~~~l~ 79 (187)
.|.++++++|++.
T Consensus 219 ~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 219 EILSLSLSNNRLY 231 (585)
T ss_pred ceeeeecccchhh
Confidence 4555555555543
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.74 E-value=20 Score=30.87 Aligned_cols=64 Identities=28% Similarity=0.295 Sum_probs=40.1
Q ss_pred cCCCCCCEEeCcCCccccc--CCcccCCCCCCCEEeccCC--cCCCCCCccccCC--CCCCEEECCCCcccc
Q 038329 87 GNLSSLQALDLSFNRFNGT--IPSSIFSLNSLQILDLSDN--QLSGSFPSSIFNM--SSLKVADFRKNRLSG 152 (187)
Q Consensus 87 ~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n--~l~~~~p~~l~~l--~~L~~L~l~~n~l~g 152 (187)
.+.+.+..+.+++|++-.. +..--...++|..|+|++| .+.. ..++.++ ..|++|-+.+|++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3456677888899887521 1111234578899999998 3331 1233333 347888999998873
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.16 E-value=63 Score=33.53 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=26.1
Q ss_pred EecCCCccccCCccccCCCCCCEEeCcCCccc
Q 038329 72 NISHLNLTGSIPSQLGNLSSLQALDLSFNRFN 103 (187)
Q Consensus 72 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 103 (187)
||++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998544556888999999999999875
No 87
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=20.07 E-value=34 Score=16.43 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=10.3
Q ss_pred ccCCccCceeeeec
Q 038329 170 IGNLTKLEKLYLGH 183 (187)
Q Consensus 170 l~~l~~L~~L~l~~ 183 (187)
+..+|+|+.||...
T Consensus 9 i~~LPqL~~LD~~~ 22 (26)
T smart00446 9 IRLLPQLRKLDXXX 22 (26)
T ss_pred HHHCCccceecccc
Confidence 56688888888654
Done!