Query 038329
Match_columns 187
No_of_seqs 187 out of 3510
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 5.1E-27 1.7E-31 183.8 11.5 164 20-186 3-186 (313)
2 4eco_A Uncharacterized protein 99.9 8.1E-24 2.8E-28 179.9 10.2 164 21-187 28-318 (636)
3 3rgz_A Protein brassinosteroid 99.9 4.8E-23 1.6E-27 178.4 11.0 130 20-154 9-167 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 1.1E-22 3.8E-27 177.7 7.9 159 21-187 267-561 (876)
5 4fcg_A Uncharacterized protein 99.9 2.6E-22 8.9E-27 158.1 6.4 163 20-187 24-219 (328)
6 3e6j_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 133.4 13.5 141 46-187 11-172 (229)
7 2o6s_A Variable lymphocyte rec 99.8 3.2E-18 1.1E-22 126.1 13.9 138 50-187 3-161 (208)
8 2v9t_B SLIT homolog 2 protein 99.8 2.2E-18 7.7E-23 128.3 13.0 137 50-186 7-164 (220)
9 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-18 8E-23 128.2 12.2 137 50-186 7-165 (220)
10 1w8a_A SLIT protein; signaling 99.8 4.4E-18 1.5E-22 124.1 10.9 126 50-187 4-139 (192)
11 2o6r_A Variable lymphocyte rec 99.7 2.4E-17 8.1E-22 118.5 12.5 126 50-187 3-137 (177)
12 3m19_A Variable lymphocyte rec 99.7 9.9E-17 3.4E-21 121.4 14.1 122 65-186 58-191 (251)
13 3rgz_A Protein brassinosteroid 99.7 7.7E-18 2.6E-22 145.9 8.7 74 113-186 631-716 (768)
14 2wfh_A SLIT homolog 2 protein 99.7 5.4E-17 1.8E-21 118.6 11.5 124 50-186 6-138 (193)
15 2o6q_A Variable lymphocyte rec 99.7 1.9E-16 6.5E-21 121.1 14.1 86 67-152 38-123 (270)
16 3m19_A Variable lymphocyte rec 99.7 2.1E-16 7.1E-21 119.6 13.5 122 66-187 35-168 (251)
17 1ogq_A PGIP-2, polygalacturona 99.7 9.9E-18 3.4E-22 131.0 6.2 92 65-156 75-167 (313)
18 3rfs_A Internalin B, repeat mo 99.7 3.3E-16 1.1E-20 119.9 13.4 123 65-187 84-218 (272)
19 4g8a_A TOLL-like receptor 4; l 99.7 1.9E-16 6.6E-21 133.2 12.3 122 66-187 52-186 (635)
20 3vq2_A TLR4, TOLL-like recepto 99.7 5.4E-16 1.8E-20 130.6 13.5 123 65-187 31-166 (606)
21 2xot_A Amphoterin-induced prot 99.7 6.9E-16 2.4E-20 122.8 13.0 139 49-187 13-176 (361)
22 1ozn_A Reticulon 4 receptor; N 99.7 9.9E-16 3.4E-20 117.8 13.3 122 65-186 55-189 (285)
23 2z81_A CD282 antigen, TOLL-lik 99.7 2.7E-16 9.3E-21 130.8 10.7 121 66-186 26-160 (549)
24 3v47_A TOLL-like receptor 5B a 99.7 3.8E-16 1.3E-20 127.2 9.9 122 66-187 30-167 (455)
25 2id5_A Lingo-1, leucine rich r 99.7 1.7E-15 5.7E-20 124.3 13.5 121 66-186 32-164 (477)
26 2z62_A TOLL-like receptor 4, v 99.6 2.4E-15 8.3E-20 115.1 12.7 122 66-187 28-162 (276)
27 3v47_A TOLL-like receptor 5B a 99.6 1.3E-15 4.4E-20 124.0 11.8 122 66-187 275-408 (455)
28 2z80_A TOLL-like receptor 2, v 99.6 9.7E-16 3.3E-20 121.3 10.8 139 46-186 22-186 (353)
29 1ozn_A Reticulon 4 receptor; N 99.6 1.4E-15 4.8E-20 116.9 11.4 121 66-186 80-213 (285)
30 3rfs_A Internalin B, repeat mo 99.6 3.7E-15 1.3E-19 114.1 13.2 121 65-187 62-194 (272)
31 4fcg_A Uncharacterized protein 99.6 1.2E-15 4.1E-20 119.9 10.5 118 66-185 150-288 (328)
32 2je0_A Acidic leucine-rich nuc 99.6 4.6E-16 1.6E-20 108.6 7.2 108 66-186 17-125 (149)
33 3g39_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 106.5 11.9 103 70-187 13-115 (170)
34 2o6q_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 112.9 13.5 121 66-186 85-217 (270)
35 2r9u_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 106.4 11.8 104 69-187 15-118 (174)
36 2ell_A Acidic leucine-rich nuc 99.6 9.6E-16 3.3E-20 109.1 7.7 107 65-186 48-159 (168)
37 3t6q_A CD180 antigen; protein- 99.6 5E-15 1.7E-19 124.7 12.7 122 66-187 33-166 (606)
38 2v9t_B SLIT homolog 2 protein 99.6 9.5E-15 3.3E-19 108.6 12.6 115 69-187 14-141 (220)
39 2z66_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 116.2 10.0 121 66-186 126-260 (306)
40 1p9a_G Platelet glycoprotein I 99.6 2E-14 6.8E-19 111.2 14.5 119 65-186 76-207 (290)
41 3j0a_A TOLL-like receptor 5; m 99.6 5.4E-15 1.9E-19 129.3 12.0 131 55-187 15-161 (844)
42 2xwt_C Thyrotropin receptor; s 99.6 3.7E-15 1.3E-19 111.8 9.3 138 48-187 4-169 (239)
43 3zyi_A Leucine-rich repeat-con 99.6 9.3E-15 3.2E-19 119.3 12.3 135 52-186 50-208 (452)
44 2z63_A TOLL-like receptor 4, v 99.6 9.3E-15 3.2E-19 121.9 12.5 122 66-187 28-162 (570)
45 3oja_B Anopheles plasmodium-re 99.6 5.9E-15 2E-19 124.5 11.1 121 66-187 51-184 (597)
46 3e6j_A Variable lymphocyte rec 99.6 2.2E-14 7.5E-19 107.2 13.1 115 69-187 22-148 (229)
47 1p9a_G Platelet glycoprotein I 99.6 1.4E-14 4.7E-19 112.0 12.3 120 65-187 54-185 (290)
48 2z66_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 113.4 11.1 121 66-186 101-235 (306)
49 1ziw_A TOLL-like receptor 3; i 99.6 8E-15 2.7E-19 125.0 11.4 121 66-186 25-157 (680)
50 3vq2_A TLR4, TOLL-like recepto 99.6 6.5E-15 2.2E-19 123.9 10.6 121 66-186 399-533 (606)
51 2z7x_B TOLL-like receptor 1, v 99.6 7.9E-15 2.7E-19 121.4 10.5 122 65-187 323-457 (520)
52 4ezg_A Putative uncharacterize 99.6 8.7E-15 3E-19 106.9 9.2 116 66-187 66-194 (197)
53 3zyj_A Leucine-rich repeat-con 99.6 2.6E-14 8.9E-19 116.3 12.9 135 52-186 39-197 (440)
54 3o6n_A APL1; leucine-rich repe 99.6 1.4E-14 4.9E-19 115.9 11.0 121 66-187 45-178 (390)
55 4eco_A Uncharacterized protein 99.6 5.6E-16 1.9E-20 131.7 2.5 120 65-186 205-365 (636)
56 2id5_A Lingo-1, leucine rich r 99.6 3E-14 1E-18 116.8 12.1 122 65-186 55-188 (477)
57 1w8a_A SLIT protein; signaling 99.6 3.2E-14 1.1E-18 103.5 10.7 104 69-187 11-115 (192)
58 4b8c_D Glucose-repressible alc 99.6 7.1E-15 2.4E-19 126.7 8.2 105 67-187 225-329 (727)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.8E-14 1.3E-18 118.6 12.0 122 65-187 352-486 (562)
60 2v70_A SLIT-2, SLIT homolog 2 99.5 3.8E-14 1.3E-18 105.3 10.7 116 69-187 14-142 (220)
61 2z62_A TOLL-like receptor 4, v 99.5 2.6E-14 8.9E-19 109.3 9.8 121 66-187 76-213 (276)
62 2wfh_A SLIT homolog 2 protein 99.5 7.1E-14 2.4E-18 101.9 11.5 103 69-187 13-115 (193)
63 3g39_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 100.8 10.1 104 50-153 5-117 (170)
64 1xku_A Decorin; proteoglycan, 99.5 4.9E-14 1.7E-18 110.4 11.0 133 51-186 28-183 (330)
65 2z63_A TOLL-like receptor 4, v 99.5 4E-14 1.4E-18 118.1 11.1 121 67-187 397-531 (570)
66 2ell_A Acidic leucine-rich nuc 99.5 1.7E-14 5.9E-19 102.5 7.5 108 65-187 23-133 (168)
67 2z80_A TOLL-like receptor 2, v 99.5 3.5E-14 1.2E-18 112.3 10.0 122 64-186 74-210 (353)
68 2ifg_A High affinity nerve gro 99.5 7E-14 2.4E-18 110.2 11.7 101 72-187 14-116 (347)
69 2ft3_A Biglycan; proteoglycan, 99.5 9E-14 3.1E-18 109.0 12.1 132 51-186 30-184 (332)
70 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 103.7 8.7 117 66-187 44-172 (197)
71 1a9n_A U2A', U2A'; complex (nu 99.5 4.8E-14 1.6E-18 101.1 8.8 103 67-185 43-151 (176)
72 3zyi_A Leucine-rich repeat-con 99.5 1E-13 3.5E-18 113.1 11.9 82 65-146 98-179 (452)
73 4g8a_A TOLL-like receptor 4; l 99.5 6.9E-14 2.3E-18 117.6 10.9 109 67-187 470-580 (635)
74 2z7x_B TOLL-like receptor 1, v 99.5 4E-14 1.4E-18 117.1 9.1 107 66-186 21-127 (520)
75 3oja_A Leucine-rich immune mol 99.5 3.6E-14 1.2E-18 117.1 8.5 128 55-187 110-250 (487)
76 2o6s_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 98.5 13.4 116 69-187 10-137 (208)
77 3t6q_A CD180 antigen; protein- 99.5 8.2E-14 2.8E-18 117.2 10.8 124 64-187 55-192 (606)
78 2z81_A CD282 antigen, TOLL-lik 99.5 5.6E-14 1.9E-18 116.9 9.6 122 64-185 48-183 (549)
79 2xot_A Amphoterin-induced prot 99.5 3.8E-14 1.3E-18 112.7 8.2 122 64-186 62-201 (361)
80 1dce_A Protein (RAB geranylger 99.5 4.2E-14 1.4E-18 118.8 8.7 104 67-187 442-546 (567)
81 4ecn_A Leucine-rich repeat pro 99.5 1.9E-14 6.5E-19 126.0 6.6 119 65-187 490-632 (876)
82 3zyj_A Leucine-rich repeat-con 99.5 1.5E-13 5.3E-18 111.7 11.3 81 65-145 87-167 (440)
83 1wwl_A Monocyte differentiatio 99.5 3.6E-14 1.2E-18 110.6 7.2 38 66-103 149-186 (312)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.2E-13 4.2E-18 115.5 10.8 107 66-186 52-158 (562)
85 1wwl_A Monocyte differentiatio 99.5 2.6E-14 8.8E-19 111.4 6.2 122 65-187 94-241 (312)
86 4glp_A Monocyte differentiatio 99.5 9.2E-14 3.1E-18 108.1 8.6 85 67-151 92-182 (310)
87 3oja_B Anopheles plasmodium-re 99.5 3.6E-13 1.2E-17 113.6 12.5 118 66-186 75-204 (597)
88 2o6r_A Variable lymphocyte rec 99.5 6.3E-13 2.1E-17 95.2 11.9 104 69-187 10-113 (177)
89 1ziw_A TOLL-like receptor 3; i 99.5 1.5E-13 5E-18 117.2 9.9 121 66-186 49-183 (680)
90 3o6n_A APL1; leucine-rich repe 99.5 5.5E-13 1.9E-17 106.7 12.5 93 66-158 69-161 (390)
91 1a9n_A U2A', U2A'; complex (nu 99.5 4.9E-14 1.7E-18 101.0 5.5 106 65-187 18-126 (176)
92 3oja_A Leucine-rich immune mol 99.5 6.8E-14 2.3E-18 115.5 6.9 116 67-187 35-182 (487)
93 2xwt_C Thyrotropin receptor; s 99.5 1.8E-13 6.1E-18 102.6 8.6 120 65-187 79-218 (239)
94 4b8c_D Glucose-repressible alc 99.5 4E-14 1.4E-18 122.0 5.6 150 22-187 131-306 (727)
95 2je0_A Acidic leucine-rich nuc 99.5 4.4E-14 1.5E-18 98.4 4.8 108 65-183 41-149 (149)
96 1xku_A Decorin; proteoglycan, 99.5 4.1E-13 1.4E-17 105.1 10.8 119 66-185 192-330 (330)
97 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.9E-18 107.6 7.3 120 65-187 144-307 (310)
98 4ay9_X Follicle-stimulating ho 99.4 2.8E-13 9.5E-18 107.2 9.2 100 52-151 7-117 (350)
99 2ft3_A Biglycan; proteoglycan, 99.4 2.3E-13 7.7E-18 106.8 8.0 119 66-185 193-331 (332)
100 3j0a_A TOLL-like receptor 5; m 99.4 3.8E-13 1.3E-17 117.6 9.7 122 65-186 72-216 (844)
101 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 93.9 10.6 86 66-151 33-118 (174)
102 3o53_A Protein LRIM1, AGAP0063 99.4 6.7E-13 2.3E-17 103.6 8.9 119 65-187 119-250 (317)
103 3cvr_A Invasion plasmid antige 99.4 4.6E-13 1.6E-17 112.4 8.3 93 46-151 35-133 (571)
104 3o53_A Protein LRIM1, AGAP0063 99.4 1E-12 3.5E-17 102.6 8.9 118 65-187 98-227 (317)
105 1h6t_A Internalin B; cell adhe 99.4 2.1E-12 7.3E-17 99.7 10.3 80 66-151 68-147 (291)
106 1dce_A Protein (RAB geranylger 99.4 1.7E-12 5.9E-17 109.0 9.3 105 65-181 462-567 (567)
107 1xeu_A Internalin C; cellular 99.4 4.7E-12 1.6E-16 96.5 10.5 111 65-186 62-184 (263)
108 1h6u_A Internalin H; cell adhe 99.4 5E-12 1.7E-16 98.4 10.8 80 66-151 63-142 (308)
109 1xeu_A Internalin C; cellular 99.3 4.8E-12 1.6E-16 96.4 10.0 112 65-187 40-163 (263)
110 4fmz_A Internalin; leucine ric 99.3 2E-12 6.9E-17 101.6 7.9 115 65-187 220-346 (347)
111 1h6t_A Internalin B; cell adhe 99.3 3.4E-12 1.2E-16 98.6 8.9 112 65-186 89-212 (291)
112 1h6u_A Internalin H; cell adhe 99.3 4.9E-12 1.7E-16 98.4 9.5 81 65-151 84-164 (308)
113 1m9s_A Internalin B; cell inva 99.3 6.8E-12 2.3E-16 106.1 10.4 81 65-151 64-144 (605)
114 1jl5_A Outer protein YOPM; leu 99.3 2.7E-11 9.4E-16 99.1 12.6 111 66-187 131-250 (454)
115 4fmz_A Internalin; leucine ric 99.3 1.8E-11 6.1E-16 96.2 9.7 116 65-187 198-324 (347)
116 1m9s_A Internalin B; cell inva 99.3 1.3E-11 4.4E-16 104.4 9.1 112 65-186 86-209 (605)
117 1o6v_A Internalin A; bacterial 99.3 1.3E-11 4.6E-16 101.0 8.2 81 66-152 243-323 (466)
118 3bz5_A Internalin-J, INLJ; leu 99.2 3.7E-11 1.3E-15 98.4 10.7 108 66-185 42-159 (457)
119 1o6v_A Internalin A; bacterial 99.2 2.6E-11 8.9E-16 99.2 9.8 80 66-151 265-344 (466)
120 1ds9_A Outer arm dynein; leuci 99.2 3.6E-14 1.2E-18 103.7 -7.1 104 65-186 47-152 (198)
121 3cvr_A Invasion plasmid antige 99.2 3.7E-11 1.3E-15 100.9 10.0 107 67-187 121-243 (571)
122 3bz5_A Internalin-J, INLJ; leu 99.2 1.2E-10 4.2E-15 95.3 12.7 110 65-186 63-182 (457)
123 1jl5_A Outer protein YOPM; leu 99.2 9.5E-11 3.3E-15 95.9 12.0 109 66-187 91-208 (454)
124 3g06_A SSPH2 (leucine-rich rep 99.2 1.4E-10 4.8E-15 98.3 12.1 68 114-187 221-297 (622)
125 1ds9_A Outer arm dynein; leuci 99.2 1E-13 3.5E-18 101.2 -6.6 114 66-186 70-184 (198)
126 3g06_A SSPH2 (leucine-rich rep 99.2 1.3E-11 4.4E-16 104.7 5.1 73 67-151 62-134 (622)
127 2ifg_A High affinity nerve gro 99.2 7.8E-11 2.7E-15 92.7 8.7 98 53-151 7-116 (347)
128 2ca6_A RAN GTPase-activating p 99.2 5.3E-12 1.8E-16 100.9 1.5 122 66-187 159-316 (386)
129 2ast_B S-phase kinase-associat 99.2 8.3E-12 2.8E-16 97.6 2.5 118 66-184 70-205 (336)
130 2ast_B S-phase kinase-associat 99.1 4.4E-12 1.5E-16 99.2 -0.2 121 65-185 92-233 (336)
131 2ca6_A RAN GTPase-activating p 99.1 2E-12 6.9E-17 103.3 -2.5 38 66-103 94-135 (386)
132 3goz_A Leucine-rich repeat-con 99.1 1.2E-11 4.1E-16 98.1 1.4 121 67-187 52-209 (362)
133 4ay9_X Follicle-stimulating ho 99.0 6.1E-10 2.1E-14 87.9 8.6 102 70-186 13-116 (350)
134 3goz_A Leucine-rich repeat-con 99.0 5.6E-11 1.9E-15 94.3 2.2 115 65-187 21-151 (362)
135 1z7x_W Ribonuclease inhibitor; 99.0 4.2E-12 1.4E-16 103.3 -5.4 122 66-187 256-411 (461)
136 1z7x_W Ribonuclease inhibitor; 98.9 4.8E-11 1.6E-15 97.1 -3.6 120 67-186 200-353 (461)
137 3un9_A NLR family member X1; l 98.8 2.6E-10 8.8E-15 91.1 -1.4 90 90-187 155-252 (372)
138 3un9_A NLR family member X1; l 98.7 5.4E-10 1.9E-14 89.2 -3.0 114 66-187 101-224 (372)
139 3rw6_A Nuclear RNA export fact 98.6 1.6E-08 5.5E-13 77.1 2.7 86 88-180 168-257 (267)
140 3sb4_A Hypothetical leucine ri 98.6 1.5E-07 5.3E-12 73.4 8.3 102 66-181 226-328 (329)
141 1io0_A Tropomodulin; LRR prote 98.6 2.4E-09 8.3E-14 77.2 -2.4 114 65-186 35-163 (185)
142 3ogk_B Coronatine-insensitive 98.5 7.7E-09 2.6E-13 86.5 -1.1 91 86-187 432-526 (592)
143 3ogk_B Coronatine-insensitive 98.5 2.9E-08 9.8E-13 83.1 1.8 24 163-186 282-305 (592)
144 3rw6_A Nuclear RNA export fact 98.3 4.1E-07 1.4E-11 69.3 3.3 78 65-144 169-257 (267)
145 2p1m_B Transport inhibitor res 98.3 5.3E-08 1.8E-12 81.4 -2.0 89 86-186 428-518 (594)
146 3sb4_A Hypothetical leucine ri 98.2 4.2E-06 1.4E-10 65.2 7.9 85 89-187 225-310 (329)
147 1io0_A Tropomodulin; LRR prote 98.2 9.7E-08 3.3E-12 68.7 -1.9 98 82-187 28-136 (185)
148 2p1m_B Transport inhibitor res 98.1 3.3E-07 1.1E-11 76.5 0.2 84 66-149 105-195 (594)
149 2ra8_A Uncharacterized protein 98.0 8.2E-07 2.8E-11 70.5 0.6 21 167-187 300-320 (362)
150 3e4g_A ATP synthase subunit S, 98.0 1.3E-06 4.6E-11 62.2 1.3 84 66-149 61-150 (176)
151 4fdw_A Leucine rich hypothetic 97.8 0.00015 5.3E-09 58.2 10.6 114 67-185 158-282 (401)
152 3e4g_A ATP synthase subunit S, 97.8 5.5E-06 1.9E-10 59.1 1.7 92 82-185 53-150 (176)
153 4fdw_A Leucine rich hypothetic 97.6 0.00024 8.3E-09 57.0 8.8 62 84-146 265-331 (401)
154 2ra8_A Uncharacterized protein 97.6 5.4E-05 1.8E-09 60.1 4.1 111 65-187 171-292 (362)
155 3rfe_A Platelet glycoprotein I 97.3 0.00079 2.7E-08 45.3 6.6 55 70-126 12-67 (130)
156 1pgv_A TMD-1, tropomodulin TMD 96.9 5.2E-05 1.8E-09 55.0 -2.0 113 65-185 40-168 (197)
157 3rfe_A Platelet glycoprotein I 96.8 0.0032 1.1E-07 42.3 6.0 57 93-151 11-68 (130)
158 4gt6_A Cell surface protein; l 96.6 0.019 6.6E-07 45.5 10.2 84 86-184 284-367 (394)
159 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00044 1.5E-08 50.1 0.1 93 84-184 35-136 (197)
160 4gt6_A Cell surface protein; l 96.5 0.011 3.7E-07 46.9 8.0 101 68-186 290-390 (394)
161 4fs7_A Uncharacterized protein 96.3 0.014 4.7E-07 46.3 7.7 85 85-184 292-376 (394)
162 4h09_A Hypothetical leucine ri 96.3 0.024 8.1E-07 44.5 8.9 62 85-147 258-319 (379)
163 4fs7_A Uncharacterized protein 95.7 0.044 1.5E-06 43.4 8.0 60 85-146 315-374 (394)
164 4h09_A Hypothetical leucine ri 94.6 0.21 7.2E-06 39.0 9.1 66 84-151 234-299 (379)
165 2lz0_A Uncharacterized protein 56.0 24 0.00082 21.9 4.8 39 108-147 14-52 (100)
166 3ox7_P MH027; urokinase-type p 22.4 21 0.00071 15.3 0.2 9 52-60 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=5.1e-27 Score=183.84 Aligned_cols=164 Identities=35% Similarity=0.644 Sum_probs=146.3
Q ss_pred CchhHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCC--ceeeEeCCCC--CcEEEEEecCCCccc--cCCccccCCCCCC
Q 038329 20 TITTDQDALLTLKPHIAHEPGNLLAKNWTSNTSVCN--WMGVTCDVHS--HRVTVLNISHLNLTG--SIPSQLGNLSSLQ 93 (187)
Q Consensus 20 ~~~~~~~~l~~~~~~l~~~~~~~~~~~w~~~~~~c~--w~g~~c~~~~--~~l~~l~l~~~~l~~--~~~~~l~~l~~L~ 93 (187)
+.++|..||++||.++ .+|. .+. +|..+.++|. |.||+|.... ++|+.|+++++.+.+ .+|..+..+++|+
T Consensus 3 c~~~~~~aL~~~k~~~-~~~~-~l~-~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDL-GNPT-TLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp SCHHHHHHHHHHHHHT-TCCG-GGT-TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCHHHHHHHHHHHHhc-CCcc-ccc-CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 5678999999999999 6665 666 8987778898 9999997433 789999999999998 8999999999999
Q ss_pred EEeCcC-CcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------C
Q 038329 94 ALDLSF-NRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------N 160 (187)
Q Consensus 94 ~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n 160 (187)
+|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+. |
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 999989999999999999999999999989999999999999999999999988886653 8
Q ss_pred CCCCcCchhccCCc-cCceeeeecccC
Q 038329 161 KLPGAMQKGIGNLT-KLEKLYLGHNRL 186 (187)
Q Consensus 161 ~~~~~ip~~l~~l~-~L~~L~l~~N~l 186 (187)
.+++.+|..++.++ +|++|++++|++
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCee
Confidence 88888999999888 899999998875
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=8.1e-24 Score=179.92 Aligned_cols=164 Identities=20% Similarity=0.361 Sum_probs=139.6
Q ss_pred chhHHHHHHHHhhhcCCCCCCccc-------CCCCCCCCCCCc---eeeEeCCCCCcEEEEEecCCCccccCCccccCCC
Q 038329 21 ITTDQDALLTLKPHIAHEPGNLLA-------KNWTSNTSVCNW---MGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLS 90 (187)
Q Consensus 21 ~~~~~~~l~~~~~~l~~~~~~~~~-------~~w~~~~~~c~w---~g~~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~ 90 (187)
...|..||.+++.++.+ +.+... .+|+.+.++|.| .||+|+. .++|+.|+++++++.|.+|+.++.++
T Consensus 28 ~~~d~~aL~~~~~~~~~-~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 28 YIKDYLALKEIWDALNG-KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHTTG-GGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHHcCC-CCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCc
Confidence 35789999999999843 333322 169988899999 9999985 37999999999999999999999999
Q ss_pred CCCEEeCcCCc---------------------------------------------------------------------
Q 038329 91 SLQALDLSFNR--------------------------------------------------------------------- 101 (187)
Q Consensus 91 ~L~~L~l~~n~--------------------------------------------------------------------- 101 (187)
+|++|++++|.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 99999999884
Q ss_pred ---------ccccCCcccCCCCCCCEEeccCCcCCCC-----------------CCcccc--CCCCCCEEECCCCccccc
Q 038329 102 ---------FNGTIPSSIFSLNSLQILDLSDNQLSGS-----------------FPSSIF--NMSSLKVADFRKNRLSGE 153 (187)
Q Consensus 102 ---------~~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~L~l~~n~l~g~ 153 (187)
+++ +|..++.+++|++|++++|.+++. +|..++ .+++|++|++++|.+.|.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 344 788899999999999999999975 899998 999999999999999999
Q ss_pred CCCCCC------------CC-CCC-cCchhccCC------ccCceeeeecccCC
Q 038329 154 FPANIP------------NK-LPG-AMQKGIGNL------TKLEKLYLGHNRLQ 187 (187)
Q Consensus 154 ~p~~~~------------n~-~~~-~ip~~l~~l------~~L~~L~l~~N~l~ 187 (187)
+|..+. |. ++| .+|..++.+ ++|++|++++|+++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 998765 66 888 888888776 88888888888764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4.8e-23 Score=178.42 Aligned_cols=130 Identities=31% Similarity=0.492 Sum_probs=88.8
Q ss_pred CchhHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCceeeEeCCCCCcEEEEEecCCCcccc---CCcc-----------
Q 038329 20 TITTDQDALLTLKPHIAHEPGNLLAKNWTSNTSVCNWMGVTCDVHSHRVTVLNISHLNLTGS---IPSQ----------- 85 (187)
Q Consensus 20 ~~~~~~~~l~~~~~~l~~~~~~~~~~~w~~~~~~c~w~g~~c~~~~~~l~~l~l~~~~l~~~---~~~~----------- 85 (187)
..++|..||++||+++ .||. .+. +|..+.++|.|.||+|. .++|+.++++++.+.|. +++.
T Consensus 9 ~~~~~~~all~~k~~~-~~~~-~l~-~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 9 SLYREIHQLISFKDVL-PDKN-LLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp CHHHHHHHHHHHHTTC-SCTT-SST-TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhC-CCcc-ccc-CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 4578899999999999 5777 777 99877889999999998 58999999999998876 5544
Q ss_pred ------------ccCCCCCCEEeCcCCcccccCCc--ccCCCCCCCEEeccCCcCCCCCCccc-cCCCCCCEEECCCCcc
Q 038329 86 ------------LGNLSSLQALDLSFNRFNGTIPS--SIFSLNSLQILDLSDNQLSGSFPSSI-FNMSSLKVADFRKNRL 150 (187)
Q Consensus 86 ------------l~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l 150 (187)
+..+++|++|++++|.+.+.+|. .++.+++|++|++++|.+.+..|..+ ..+++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 44455555555555555555554 55555555555555555554444433 4555555555555555
Q ss_pred cccC
Q 038329 151 SGEF 154 (187)
Q Consensus 151 ~g~~ 154 (187)
++..
T Consensus 164 ~~~~ 167 (768)
T 3rgz_A 164 SGAN 167 (768)
T ss_dssp EEET
T ss_pred CCcC
Confidence 5433
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.1e-22 Score=177.72 Aligned_cols=159 Identities=23% Similarity=0.404 Sum_probs=131.2
Q ss_pred chhHHHHHHHHhhhcCCCCCCcccCCCCCCC-----CC--CCc------------eeeEeCCCCCcEEEEEecCCCcccc
Q 038329 21 ITTDQDALLTLKPHIAHEPGNLLAKNWTSNT-----SV--CNW------------MGVTCDVHSHRVTVLNISHLNLTGS 81 (187)
Q Consensus 21 ~~~~~~~l~~~~~~l~~~~~~~~~~~w~~~~-----~~--c~w------------~g~~c~~~~~~l~~l~l~~~~l~~~ 81 (187)
...|..||++||.++ .+| +|+.+. ++ |.| .||+|.. .++|+.|+++++++.|.
T Consensus 267 ~~~d~~ALl~~k~~l-~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 267 YIKDYKALKAIWEAL-DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHT-TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred chHHHHHHHHHHHHc-CCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 457899999999999 555 454332 45 999 9999985 58999999999999999
Q ss_pred CCccccCCCCCCEEeC-cCCccccc-------------------------------------------------------
Q 038329 82 IPSQLGNLSSLQALDL-SFNRFNGT------------------------------------------------------- 105 (187)
Q Consensus 82 ~~~~l~~l~~L~~L~l-~~n~~~~~------------------------------------------------------- 105 (187)
+|+.|+.++.|++|++ ++|.+.|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 77765444
Q ss_pred ---------------------CCcccCCCCCCCEEeccCCcCCC-----------------CCCcccc--CCCCCCEEEC
Q 038329 106 ---------------------IPSSIFSLNSLQILDLSDNQLSG-----------------SFPSSIF--NMSSLKVADF 145 (187)
Q Consensus 106 ---------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~p~~l~--~l~~L~~L~l 145 (187)
+|..+..+++|+.|++++|.+++ .+|..++ .+++|++|++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 77788889999999999999997 3888887 9999999999
Q ss_pred CCCcccccCCCCCC------------CC-CCC-cCchhccCCc-------cCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP------------NK-LPG-AMQKGIGNLT-------KLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~-~~~-~ip~~l~~l~-------~L~~L~l~~N~l~ 187 (187)
++|.+.+.+|..+. |. ++| .+|..++.++ +|+.|+|++|.++
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99999888886554 65 777 7887776665 8888888888763
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.6e-22 Score=158.07 Aligned_cols=163 Identities=20% Similarity=0.348 Sum_probs=138.0
Q ss_pred CchhHHHHHHHHhhhcCCCCCCcccCCC----CCCCCCCCceeeEeC--------CCCCcEEEEEecCCCccccCCcccc
Q 038329 20 TITTDQDALLTLKPHIAHEPGNLLAKNW----TSNTSVCNWMGVTCD--------VHSHRVTVLNISHLNLTGSIPSQLG 87 (187)
Q Consensus 20 ~~~~~~~~l~~~~~~l~~~~~~~~~~~w----~~~~~~c~w~g~~c~--------~~~~~l~~l~l~~~~l~~~~~~~l~ 87 (187)
...++..||+.|+..+..++..... .| .....+|.|.|+.|. ....+++.|+++++.+. .+|..+.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~-~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHH-HHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhh-hhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 3467889999999998667766676 78 456789999999994 13478999999999998 7888888
Q ss_pred CCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC--------
Q 038329 88 NLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP-------- 159 (187)
Q Consensus 88 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~-------- 159 (187)
.+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+.
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 9999999999999998 88988999999999999999999 8899999999999999999988888887541
Q ss_pred -------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 160 -------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 160 -------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
|.++ .+|..++.+++|++|++++|+++
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 5665 77777888888888888888764
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.6e-19 Score=133.39 Aligned_cols=141 Identities=24% Similarity=0.281 Sum_probs=119.9
Q ss_pred CCCCCCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCC
Q 038329 46 NWTSNTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSL 116 (187)
Q Consensus 46 ~w~~~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 116 (187)
.|....+.|.|+++.|.. ...+++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence 345567899999999962 23578999999999998778889999999999999999985555667899999
Q ss_pred CEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecc
Q 038329 117 QILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHN 184 (187)
Q Consensus 117 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N 184 (187)
+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+. |.+.+..+..+..+++|+.|++++|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 99999999999776677899999999999999998 7776543 7787766677888999999999999
Q ss_pred cCC
Q 038329 185 RLQ 187 (187)
Q Consensus 185 ~l~ 187 (187)
+++
T Consensus 170 ~~~ 172 (229)
T 3e6j_A 170 PWD 172 (229)
T ss_dssp CBC
T ss_pred Ccc
Confidence 863
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.2e-18 Score=126.06 Aligned_cols=138 Identities=23% Similarity=0.250 Sum_probs=113.9
Q ss_pred CCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEe
Q 038329 50 NTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120 (187)
Q Consensus 50 ~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 120 (187)
..+.|.|.++.|.. ...+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 45678999999952 234689999999999966666688999999999999999966566678999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|.+++..+..+..+++|++|++++|++++..+..+. |.+++..+..+..+++|+.|++++|++.
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 999999966666789999999999999999855443332 7787766667889999999999999763
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.2e-18 Score=128.32 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=116.9
Q ss_pred CCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEe
Q 038329 50 NTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120 (187)
Q Consensus 50 ~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 120 (187)
..+.|.|..+.|.. ...+++.|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 7 ~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 45678898888852 124689999999999976667899999999999999999988899999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|.++...+..|..+++|++|++++|++++..|..+. |.+++..+..+..+++|+.|+|++|++
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999999965556678999999999999999976666553 788887777899999999999999976
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=128.23 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=115.7
Q ss_pred CCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCC-ccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEE
Q 038329 50 NTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIP-SQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQIL 119 (187)
Q Consensus 50 ~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 119 (187)
+.+.|.|..+.|.. ....++.|++++|.+++..+ ..|..++.|++|++++|.+++..+..|..+++|++|
T Consensus 7 ~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 7 EKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 45678888888851 12357789999999996644 347889999999999999997777789999999999
Q ss_pred eccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 120 DLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 120 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++++|.+++..+..|..+++|++|++++|++++..|..+. |.+++..|..+..+++|+.|+|++|++
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999977777799999999999999999977676554 888888899999999999999999986
No 10
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=4.4e-18 Score=124.15 Aligned_cols=126 Identities=22% Similarity=0.311 Sum_probs=106.7
Q ss_pred CCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCc-cccCCCCCCEEeCcCCcccccCCcccCCCCCCCEE
Q 038329 50 NTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPS-QLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQIL 119 (187)
Q Consensus 50 ~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 119 (187)
..+.|.|..+.|.. ...+++.|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|
T Consensus 4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 35668888888751 123789999999999865554 38899999999999999998888999999999999
Q ss_pred eccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 120 DLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 120 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++++|.+++..+..|..+++|++|++++|++++. +|..+..+++|++|+|++|+++
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV------------MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE------------CTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee------------CHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999988888899999999999999999844 3455678899999999999874
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.4e-17 Score=118.49 Aligned_cols=126 Identities=23% Similarity=0.302 Sum_probs=105.0
Q ss_pred CCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEe
Q 038329 50 NTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120 (187)
Q Consensus 50 ~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 120 (187)
..+.|.|.++.|.. ...+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 3 ~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 35678899999852 235789999999999966666788999999999999999966666688999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|.+++..+..+..+++|++|++++|.++ .+|. ..+..+++|++|++++|+++
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~-----------~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPD-----------GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT-----------TTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcce-EeCH-----------HHhcCCcccCEEEecCCCee
Confidence 9999999776677899999999999999998 3332 23577899999999999874
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=9.9e-17 Score=121.42 Aligned_cols=122 Identities=22% Similarity=0.220 Sum_probs=79.6
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 34566677777766655555566677777777777777655555566677777777777777755445566677777777
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|++++..+..+. |.+.+..+..+..+++|+.|++++|++
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 777777643332332 666666666677777777777777765
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=7.7e-18 Score=145.90 Aligned_cols=74 Identities=35% Similarity=0.532 Sum_probs=53.5
Q ss_pred CCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceee
Q 038329 113 LNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLY 180 (187)
Q Consensus 113 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~ 180 (187)
+.+|+.|++++|.++|.+|..++.++.|+.|++++|+++|.+|..+. |+++|.+|..++.+++|++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 35566777777777777777777777777777777777777776554 777777777777777777777
Q ss_pred eecccC
Q 038329 181 LGHNRL 186 (187)
Q Consensus 181 l~~N~l 186 (187)
+++|++
T Consensus 711 ls~N~l 716 (768)
T 3rgz_A 711 LSNNNL 716 (768)
T ss_dssp CCSSEE
T ss_pred CcCCcc
Confidence 777765
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=118.57 Aligned_cols=124 Identities=28% Similarity=0.367 Sum_probs=105.4
Q ss_pred CCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEe
Q 038329 50 NTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120 (187)
Q Consensus 50 ~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 120 (187)
..+.|.|..+.|.. ....++.|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 34567777777741 2347899999999998 7788899999999999999999977778899999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|.+++..|..|..+++|++|++++|.++ .+|. ..+..+++|+.|++++|++
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~-----------~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE-----------GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCT-----------TTTTTCTTCCEEECCSSCE
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeCh-----------hhhhcCccccEEEeCCCCe
Confidence 9999999887788999999999999999998 2332 2467889999999999986
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.9e-16 Score=121.09 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=49.6
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
.++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 46667777776664444456666666666666666663333334556666666666666654444444555555555555
Q ss_pred CCcccc
Q 038329 147 KNRLSG 152 (187)
Q Consensus 147 ~n~l~g 152 (187)
+|.+++
T Consensus 118 ~n~l~~ 123 (270)
T 2o6q_A 118 RNQLKS 123 (270)
T ss_dssp SSCCCC
T ss_pred CCccCe
Confidence 555553
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2.1e-16 Score=119.65 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=107.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
..++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46899999999999877778999999999999999999877888999999999999999999777778899999999999
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|++++..+..+. |.+.+..+..++.+++|++|+|++|+++
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999854443332 7888777778999999999999999874
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=9.9e-18 Score=130.98 Aligned_cols=92 Identities=34% Similarity=0.540 Sum_probs=62.1
Q ss_pred CCcEEEEEecC-CCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 038329 65 SHRVTVLNISH-LNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 143 (187)
..+++.|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 34566777774 66666666667777777777777777766666666666677777777776666666666666666666
Q ss_pred ECCCCcccccCCC
Q 038329 144 DFRKNRLSGEFPA 156 (187)
Q Consensus 144 ~l~~n~l~g~~p~ 156 (187)
++++|+++|.+|.
T Consensus 155 ~L~~N~l~~~~p~ 167 (313)
T 1ogq_A 155 TFDGNRISGAIPD 167 (313)
T ss_dssp ECCSSCCEEECCG
T ss_pred ECcCCcccCcCCH
Confidence 6666666655554
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=3.3e-16 Score=119.89 Aligned_cols=123 Identities=21% Similarity=0.210 Sum_probs=96.9
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 56788888888888866666678888888888888888866666678888888888888888866666678888888888
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|++++..+..+. |.+.+..|..++.+++|++|++++|+++
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 888888855443332 7788777777888899999999888763
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=1.9e-16 Score=133.18 Aligned_cols=122 Identities=25% Similarity=0.199 Sum_probs=105.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
..+++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999766778999999999999999999777778999999999999999999766678999999999999
Q ss_pred CCCcccccCCCCCC------------CCCCC-cCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP------------NKLPG-AMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~-~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|++++..+..+. |.+.+ .+|..++.+++|++|++++|+++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999854444443 66654 57888899999999999999874
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=5.4e-16 Score=130.55 Aligned_cols=123 Identities=24% Similarity=0.189 Sum_probs=107.2
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35789999999999977777899999999999999999977788899999999999999999987789999999999999
Q ss_pred CCCCcccccCCCCCC------------CCCCC-cCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPG-AMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~-~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|.+++..|..+. |.+.+ .+|..++.+++|++|++++|+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 999999855545443 77765 68999999999999999999864
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=6.9e-16 Score=122.75 Aligned_cols=139 Identities=24% Similarity=0.251 Sum_probs=107.2
Q ss_pred CCCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCcccc-CCCCCCEEeCcCCcccccCCcccCCCCCCCE
Q 038329 49 SNTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLG-NLSSLQALDLSFNRFNGTIPSSIFSLNSLQI 118 (187)
Q Consensus 49 ~~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 118 (187)
+..+.|.+..+.|.. ....++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++
T Consensus 13 p~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 13 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 345667787777741 123577899999999876666676 8899999999999998777778889999999
Q ss_pred EeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhc---cCCccCceeeeec
Q 038329 119 LDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGI---GNLTKLEKLYLGH 183 (187)
Q Consensus 119 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l---~~l~~L~~L~l~~ 183 (187)
|++++|.++...+..|..+++|++|++++|++++..|..+. |.+++..+..+ ..+++|+.|+|++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 99999999877667788999999999999999866565543 66665433334 5789999999999
Q ss_pred ccCC
Q 038329 184 NRLQ 187 (187)
Q Consensus 184 N~l~ 187 (187)
|+|+
T Consensus 173 N~l~ 176 (361)
T 2xot_A 173 NKLK 176 (361)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9874
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=9.9e-16 Score=117.76 Aligned_cols=122 Identities=22% Similarity=0.298 Sum_probs=80.0
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCc-ccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNR-FNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 143 (187)
..+++.|++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 3456777777777765556667777777777777775 554446666677777777777777776656667777777777
Q ss_pred ECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 144 DFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++++|.+++..+..+. |.+.+..+..+..+++|+.|++++|.+
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 7777777643333232 555554445566777777777777765
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=2.7e-16 Score=130.84 Aligned_cols=121 Identities=28% Similarity=0.264 Sum_probs=97.4
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++++|++++|.+.+..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47889999999998777788899999999999999998777788899999999999999998766666889999999999
Q ss_pred CCCcccc-cCCCCCC------------CCCCCcCc-hhccCCccCceeeeecccC
Q 038329 146 RKNRLSG-EFPANIP------------NKLPGAMQ-KGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g-~~p~~~~------------n~~~~~ip-~~l~~l~~L~~L~l~~N~l 186 (187)
++|.+++ ..|..+. |.+.+.+| ..+..+++|++|++++|.+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 9999875 3444443 55445555 4677777888888877765
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=3.8e-16 Score=127.17 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=105.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccC-CcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTI-PSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.++++|++++|.+.+..|..|..+++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57899999999999877889999999999999999997555 56789999999999999999988899999999999999
Q ss_pred CCCCcccccCCCC--CC------------CCCCCcCchh-ccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPAN--IP------------NKLPGAMQKG-IGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~--~~------------n~~~~~ip~~-l~~l~~L~~L~l~~N~l~ 187 (187)
+++|.+++.+|.. +. |.+.+..|.. +..+++|++|++++|+++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 9999998754432 22 7888877876 789999999999999763
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=1.7e-15 Score=124.29 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=89.8
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46778888888888666777888888888888888888777777888888888888888887554456777888888888
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++|++++..|..+. |.+.+..|..+..+++|+.|++++|.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 88888766554443 566666666667777777777777654
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=2.4e-15 Score=115.07 Aligned_cols=122 Identities=25% Similarity=0.199 Sum_probs=86.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
..++.|++++|.+.+..+..|..++.|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35677777777777555556777777777777777777555556777777777777777777666666777777777777
Q ss_pred CCCcccccCCCCCC------------CCCCC-cCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP------------NKLPG-AMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~-~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|.+++..+..+. |.+.+ .+|..++.+++|++|++++|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 77777644332332 55555 36788888888888888888764
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=1.3e-15 Score=124.01 Aligned_cols=122 Identities=23% Similarity=0.276 Sum_probs=100.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.+++++|.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 46788888888888777778888888888888888888777778888888888888888888777778888888888888
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|++++..|..+. |.+++..+..+..+++|++|++++|+++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 88888876666553 7777766667789999999999999874
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=9.7e-16 Score=121.26 Aligned_cols=139 Identities=29% Similarity=0.278 Sum_probs=101.0
Q ss_pred CCCCCCCCCCceeeEeCC-----------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCC
Q 038329 46 NWTSNTSVCNWMGVTCDV-----------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLN 114 (187)
Q Consensus 46 ~w~~~~~~c~w~g~~c~~-----------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 114 (187)
.|......|.|.++ |+. ...++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..++
T Consensus 22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 35555678888887 531 124789999999999866566789999999999999999877777888999
Q ss_pred CCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCC--CCC------------C-CCCCcCchhccCCccCcee
Q 038329 115 SLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPA--NIP------------N-KLPGAMQKGIGNLTKLEKL 179 (187)
Q Consensus 115 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~--~~~------------n-~~~~~ip~~l~~l~~L~~L 179 (187)
+|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+. | .+....|..++.+++|+.|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999999998544444888899999999999887 4554 232 3 3444445566666777777
Q ss_pred eeecccC
Q 038329 180 YLGHNRL 186 (187)
Q Consensus 180 ~l~~N~l 186 (187)
++++|.+
T Consensus 180 ~l~~n~l 186 (353)
T 2z80_A 180 EIDASDL 186 (353)
T ss_dssp EEEETTC
T ss_pred ECCCCCc
Confidence 7766654
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=1.4e-15 Score=116.92 Aligned_cols=121 Identities=24% Similarity=0.266 Sum_probs=60.4
Q ss_pred CcEEEEEecCCC-ccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLN-LTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.+++.|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 445555655554 4433344455555555555555555544444555555555555555555543334455555555555
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|++++..+..+. |.+.+..|..+..+++|+.|++++|++
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 555555432222221 444444444444455555555554443
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=3.7e-15 Score=114.08 Aligned_cols=121 Identities=25% Similarity=0.239 Sum_probs=105.1
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5679999999999985 3 4688999999999999999977777789999999999999999977777789999999999
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|.+++..+..+. |.+++..+..++.+++|++|++++|+++
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999855554432 8888877777899999999999999874
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=1.2e-15 Score=119.92 Aligned_cols=118 Identities=26% Similarity=0.362 Sum_probs=67.1
Q ss_pred CcEEEEEecCCCccccCCccccC---------CCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGN---------LSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFN 136 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~---------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 136 (187)
.+++.|++++|++.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence 45566666665555555554433 556666666666655 55555555666666666666655 34445555
Q ss_pred CCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeeccc
Q 038329 137 MSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 137 l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
+++|++|++++|.+.+.+|..+. |.+.+.+|..++.+++|++|+|++|+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 56666666666555555555442 45555555555555566666665554
No 32
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=4.6e-16 Score=108.60 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=59.7
Q ss_pred CcEEEEEecCCCcc-ccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLT-GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.+++.+++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34556666666665 45555555666666666666666533 4455566666666666666644555555566666666
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|.+++. ..|..++.+++|++|++++|++
T Consensus 95 ls~N~i~~~-----------~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 95 LSGNKIKDL-----------STIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp CTTSCCCSH-----------HHHGGGGGCTTCCEEECTTCGG
T ss_pred CCCCcCCCh-----------HHHHHHhhCCCCCEEeCcCCcc
Confidence 666665511 0123444555555555555543
No 33
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=3.8e-15 Score=106.52 Aligned_cols=103 Identities=25% Similarity=0.337 Sum_probs=76.3
Q ss_pred EEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCc
Q 038329 70 VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNR 149 (187)
Q Consensus 70 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 149 (187)
.++++++++. .+|..+ .+.|++|++++|.+++..+..|..+.+|++|++++|++++..+..|..+++|++|++++|+
T Consensus 13 ~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 5666777776 466554 3778888888888887667778888888888888888886655667788888888888888
Q ss_pred ccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 150 LSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 150 l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++ +| +..+..+++|++|+|++|+++
T Consensus 90 l~~-~~-----------~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKS-IP-----------RGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCC-CC-----------TTTTTTCTTCCEEECCSSCBC
T ss_pred cCE-eC-----------HHHhcCCCCCCEEEeCCCCCC
Confidence 872 22 223567788888888888763
No 34
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=5.6e-15 Score=112.90 Aligned_cols=121 Identities=23% Similarity=0.230 Sum_probs=72.7
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 45666666666666444444556666666666666666555555566666666666666666444444666666777777
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++|.+++..+..+. |.+.+..+..+..+++|+.|++++|++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 76666643332222 555554444566677777777777764
No 35
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=5e-15 Score=106.37 Aligned_cols=104 Identities=26% Similarity=0.361 Sum_probs=85.5
Q ss_pred EEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCC
Q 038329 69 TVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKN 148 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 148 (187)
+.++++++++. .+|..+. +.|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46888888887 6777654 78999999999999777888999999999999999999655556788999999999999
Q ss_pred cccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 149 RLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 149 ~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++ .+|. ..+..+++|++|+|++|+++
T Consensus 92 ~l~-~l~~-----------~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPR-----------GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCT-----------TTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCH-----------HHhccccCCCEEEeCCCCcc
Confidence 997 2222 23678899999999999864
No 36
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=9.6e-16 Score=109.08 Aligned_cols=107 Identities=23% Similarity=0.222 Sum_probs=75.2
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCC-CccccCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSF-PSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L 143 (187)
..+++.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.. +..+..+++|++|
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 34677777777777643 55677777777777777777556666666777777777777777431 1566777777777
Q ss_pred ECCCCcccccCCCCCCCCCCCcCch----hccCCccCceeeeecccC
Q 038329 144 DFRKNRLSGEFPANIPNKLPGAMQK----GIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~n~~~~~ip~----~l~~l~~L~~L~l~~N~l 186 (187)
++++|+++ .+|. .+..+++|++|++++|.+
T Consensus 126 ~l~~N~l~-------------~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 126 DLFNCEVT-------------NLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECCSSGGG-------------TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeeCCcCc-------------chHHHHHHHHHhCccCcEecCCCCCh
Confidence 77777776 2333 678889999999988875
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=5e-15 Score=124.65 Aligned_cols=122 Identities=19% Similarity=0.090 Sum_probs=94.1
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
..++.|++++|.+++..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46888999999988777778888899999999999888777888888889999999998888777888888888888888
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|.+++..|..+. |.+.+..++.+..+++|++|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 88888754333332 5666533233334777888888777653
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=9.5e-15 Score=108.60 Aligned_cols=115 Identities=26% Similarity=0.391 Sum_probs=100.9
Q ss_pred EEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCC
Q 038329 69 TVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKN 148 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 148 (187)
+.++.+++++. .+|..+. +.++.|++++|.+.+..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 36889999988 6777654 78999999999999777778999999999999999999888999999999999999999
Q ss_pred cccccCCCCC-C------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 149 RLSGEFPANI-P------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 149 ~l~g~~p~~~-~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
.++ .+|... . |.+.+..|..+..+++|++|+|++|+|+
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 998 555543 2 8888888999999999999999999874
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=2.9e-15 Score=116.15 Aligned_cols=121 Identities=26% Similarity=0.331 Sum_probs=74.8
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccc-cCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNG-TIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.+++.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 355566666666655555556666666666666666654 3555666666666666666666655566666666666666
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCc-cCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLT-KLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~-~L~~L~l~~N~l 186 (187)
+++|.+++..+..+. |.+.+..|..+..++ +|++|++++|++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 666666543332221 666666666666663 677777777765
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=2e-14 Score=111.17 Aligned_cols=119 Identities=29% Similarity=0.353 Sum_probs=83.0
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 76 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 456777777777776 5666677777777888888777755556677777788888888877765555667777788888
Q ss_pred CCCCcccccCCCCC-C------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANI-P------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~-~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|+++ .+|... . |.+. .+|..+..+.+|+.|+|++|++
T Consensus 155 L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 8887776 444322 1 4444 5666666677777777777765
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=129.26 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=107.6
Q ss_pred CceeeEeCCCCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccC-CcccCCCCCCCEEeccCCcCCCCCCcc
Q 038329 55 NWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTI-PSSIFSLNSLQILDLSDNQLSGSFPSS 133 (187)
Q Consensus 55 ~w~g~~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~ 133 (187)
.|..|.+ ...++++|++++|.+++..+..|..+++|++|++++|...+.+ |..|..+++|++|++++|.+.+..|..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 4555554 2577899999999999877888999999999999999665555 678899999999999999999888899
Q ss_pred ccCCCCCCEEECCCCcccccCCCC--CC------------CCCCCcCc-hhccCCccCceeeeecccCC
Q 038329 134 IFNMSSLKVADFRKNRLSGEFPAN--IP------------NKLPGAMQ-KGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 134 l~~l~~L~~L~l~~n~l~g~~p~~--~~------------n~~~~~ip-~~l~~l~~L~~L~l~~N~l~ 187 (187)
|..+++|++|++++|.+++.+|.. +. |.+.+..| ..++++++|++|+|++|.++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999999999999999998766654 32 77776654 57899999999999998763
No 42
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=3.7e-15 Score=111.83 Aligned_cols=138 Identities=17% Similarity=0.261 Sum_probs=105.8
Q ss_pred CCCCCCCCc-ee--eEeCC------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCc-ccccCCcccCCCCCCC
Q 038329 48 TSNTSVCNW-MG--VTCDV------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNR-FNGTIPSSIFSLNSLQ 117 (187)
Q Consensus 48 ~~~~~~c~w-~g--~~c~~------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~ 117 (187)
-+..+.|.+ .. +.|.. ....++.|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|+
T Consensus 4 cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~ 83 (239)
T 2xwt_C 4 SSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83 (239)
T ss_dssp CSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred CCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence 344455654 44 34742 23478899999999996666688899999999999997 8755666788999999
Q ss_pred EEeccC-CcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC---------------C-CCCCcCchhccCCccCc-ee
Q 038329 118 ILDLSD-NQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP---------------N-KLPGAMQKGIGNLTKLE-KL 179 (187)
Q Consensus 118 ~L~l~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~---------------n-~~~~~ip~~l~~l~~L~-~L 179 (187)
+|++++ |.++...+..|..+++|++|++++|++++ +|. +. | .+.+..+..+..+++|+ .|
T Consensus 84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp EEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence 999998 99986666788899999999999999884 664 21 4 55555555688888888 89
Q ss_pred eeecccCC
Q 038329 180 YLGHNRLQ 187 (187)
Q Consensus 180 ~l~~N~l~ 187 (187)
++++|+++
T Consensus 162 ~l~~n~l~ 169 (239)
T 2xwt_C 162 KLYNNGFT 169 (239)
T ss_dssp ECCSCCCC
T ss_pred EcCCCCCc
Confidence 98888764
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=9.3e-15 Score=119.33 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=103.1
Q ss_pred CCCC--ceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEe
Q 038329 52 SVCN--WMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120 (187)
Q Consensus 52 ~~c~--w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 120 (187)
+.|. |..+.|.. ...+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 50 C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 50 CSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 4454 45677741 234789999999999988888899999999999999999988888999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCch-hccCCccCceeeeecccC
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQK-GIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~-~l~~l~~L~~L~l~~N~l 186 (187)
+++|.++...+..+..+++|++|++++|+++...+..+. |+..+.+|. .+..+++|++|++++|++
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 999999976667789999999999999999843332332 122333333 456666666666666654
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=9.3e-15 Score=121.92 Aligned_cols=122 Identities=25% Similarity=0.199 Sum_probs=90.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45777888888877666667777888888888888777666667777888888888888777666677777888888888
Q ss_pred CCCcccccCCCCCC------------CCCCC-cCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP------------NKLPG-AMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~-~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|.+++..+..+. |.+.+ .+|..++.+++|++|++++|+++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 88877643222222 55655 57888888999999999888763
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=5.9e-15 Score=124.50 Aligned_cols=121 Identities=19% Similarity=0.218 Sum_probs=92.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.++++++.+....+..+..++.|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 35677888888877444445677888888888888888766777888888888888888888777777788888888888
Q ss_pred CCCcccccCCCC-CC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPAN-IP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~-~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|.++ .+|.. +. |.+.+..|..++.+++|++|++++|.++
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 888887 44443 22 7777777778888888888888888763
No 46
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=2.2e-14 Score=107.23 Aligned_cols=115 Identities=30% Similarity=0.329 Sum_probs=98.0
Q ss_pred EEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCC
Q 038329 69 TVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKN 148 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 148 (187)
+.++.+++++. .+|..+. +.|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 46889999887 6776554 88999999999999888888999999999999999998665567899999999999999
Q ss_pred cccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 149 RLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 149 ~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++++..+..+. |.+. .+|..+..+++|++|+|++|+|+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 99854444332 6776 78999999999999999999874
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.4e-14 Score=112.05 Aligned_cols=120 Identities=28% Similarity=0.335 Sum_probs=91.7
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+++. +. ...+++|++|++++|.+. .+|..+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 54 l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 45677788888777743 32 267778888888888887 6777788888999999999999866667788899999999
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|++++..+..+. |++++..+..+..+++|++|+|++|+++
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 999998844333332 7777555556688899999999998874
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=9e-15 Score=113.42 Aligned_cols=121 Identities=21% Similarity=0.244 Sum_probs=76.5
Q ss_pred CcEEEEEecCCCccccCC-ccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCC-CCCccccCCCCCCEE
Q 038329 66 HRVTVLNISHLNLTGSIP-SQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG-SFPSSIFNMSSLKVA 143 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L 143 (187)
.+++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 445566666665553332 345666666666666666665566666666777777777776664 456666677777777
Q ss_pred ECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 144 DFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++++|.+++..|..+. |.+.+..+..+..+++|++|++++|++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 7777777655454442 566655555666777777777777765
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.58 E-value=8e-15 Score=125.01 Aligned_cols=121 Identities=24% Similarity=0.294 Sum_probs=66.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++++|++++|.+.+..+..|..++.|++|++++|.+.+..|..+..+++|++|++++|.++...+..|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 34556666666665444444555666666666666665555555555566666666666555333334555556666666
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++|.+++..|..+. |.+.+..|..++.+++|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 66555533333332 445555555555566666666665544
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.58 E-value=6.5e-15 Score=123.95 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=69.1
Q ss_pred CcEEEEEecCCCccccCC-ccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCC-CCCccccCCCCCCEE
Q 038329 66 HRVTVLNISHLNLTGSIP-SQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG-SFPSSIFNMSSLKVA 143 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L 143 (187)
.+++.|++++|.+.+..+ ..+..++.|++|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+..+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 344555555555554433 345555555555565555555555555556666666666666554 245555666666666
Q ss_pred ECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 144 DFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++++|++++..|..+. |.+++.+|..+..+++|+.|++++|++
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 6666666555444432 566666666666666666666666655
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=7.9e-15 Score=121.42 Aligned_cols=122 Identities=26% Similarity=0.318 Sum_probs=96.5
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccc--cCCcccCCCCCCCEEeccCCcCCCCCCcc-ccCCCCCC
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNG--TIPSSIFSLNSLQILDLSDNQLSGSFPSS-IFNMSSLK 141 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~ 141 (187)
..+++.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++.+|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 5678899999999998788888899999999999999986 45677888999999999999998756654 77788888
Q ss_pred EEECCCCcccccCCCCCC----------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 142 VADFRKNRLSGEFPANIP----------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 142 ~L~l~~n~l~g~~p~~~~----------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+|++++|++++.+|..+. |.++ .+|..+..+++|++|++++|+++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp EEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred EEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 888888888776665442 5665 67776667777777777777653
No 52
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=8.7e-15 Score=106.85 Aligned_cols=116 Identities=21% Similarity=0.335 Sum_probs=68.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+. .++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 45666666666443 2234556666666666666666555556666666666666666666555555666666666666
Q ss_pred CCCc-ccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNR-LSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~-l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|. ++ .+|. +. |.+.+ ++ .+..+++|+.|++++|++.
T Consensus 144 ~~n~~i~-~~~~-l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 144 SYNGAIT-DIMP-LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSCTBCC-CCGG-GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCCCCcc-ccHh-hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 6665 33 3331 11 33333 33 5778889999999998863
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=2.6e-14 Score=116.29 Aligned_cols=135 Identities=22% Similarity=0.233 Sum_probs=101.1
Q ss_pred CCCC--ceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEe
Q 038329 52 SVCN--WMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120 (187)
Q Consensus 52 ~~c~--w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 120 (187)
+.|. |..+.|.. ....++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|+
T Consensus 39 C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 39 CSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp SEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 4454 56777741 234678999999999977778899999999999999999877778899999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCch-hccCCccCceeeeecccC
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQK-GIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~-~l~~l~~L~~L~l~~N~l 186 (187)
+++|.++...+..|..+++|++|++++|+++...+..+. |+..+.++. .+..+++|++|++++|.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 999999966666789999999999999998744333332 222333333 466666666666666654
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.57 E-value=1.4e-14 Score=115.94 Aligned_cols=121 Identities=20% Similarity=0.226 Sum_probs=91.9
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 46778888888877433334677888888888888887666667888888888888888888776777888888888888
Q ss_pred CCCcccccCCCCC-C------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANI-P------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~-~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|.++ .+|... . |.+.+..|..+..+++|++|++++|+++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 888887 555432 2 6777777777888888888888888763
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=5.6e-16 Score=131.74 Aligned_cols=120 Identities=19% Similarity=0.351 Sum_probs=80.3
Q ss_pred CCcEEEEEecCCCcccc-----------------CCcccc--CCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCc
Q 038329 65 SHRVTVLNISHLNLTGS-----------------IPSQLG--NLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQ 125 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 125 (187)
..++++|++++|.+++. +|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 56677888888887764 777777 78888888888888777777777777778888777776
Q ss_pred -CCC-CCCccccCC------CCCCEEECCCCcccccCCC--CCC------------CCCCCcCchhccCCccCceeeeec
Q 038329 126 -LSG-SFPSSIFNM------SSLKVADFRKNRLSGEFPA--NIP------------NKLPGAMQKGIGNLTKLEKLYLGH 183 (187)
Q Consensus 126 -l~~-~~p~~l~~l------~~L~~L~l~~n~l~g~~p~--~~~------------n~~~~~ip~~l~~l~~L~~L~l~~ 183 (187)
+++ .+|..++.+ ++|++|++++|+++ .+|. .+. |.+.|.+| .++.+++|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 766 566555554 56666666666665 5554 222 55555555 555555555555555
Q ss_pred ccC
Q 038329 184 NRL 186 (187)
Q Consensus 184 N~l 186 (187)
|++
T Consensus 363 N~l 365 (636)
T 4eco_A 363 NQI 365 (636)
T ss_dssp SEE
T ss_pred Ccc
Confidence 543
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=116.80 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=92.4
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 56788888888888877777888888888888888888755555677888888888888888877777788888888888
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|.+++..|..+. |.+.+..+..+..+++|+.|++++|.+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 888888765554443 566665555677777777777777654
No 57
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=3.2e-14 Score=103.54 Aligned_cols=104 Identities=23% Similarity=0.248 Sum_probs=89.1
Q ss_pred EEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCc-ccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 69 TVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPS-SIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
+.++++++++. .+|..+.. .++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57899999997 77776643 899999999999865554 488999999999999999988899999999999999999
Q ss_pred CcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 148 NRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 148 n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
|++++.. |..+..+++|++|+|++|+++
T Consensus 88 N~l~~~~------------~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 88 NKIKEIS------------NKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp CCCCEEC------------SSSSTTCTTCCEEECCSSCCC
T ss_pred CcCCccC------------HHHhcCCCCCCEEECCCCcCC
Confidence 9998433 334678999999999999874
No 58
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=7.1e-15 Score=126.72 Aligned_cols=105 Identities=30% Similarity=0.395 Sum_probs=65.1
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
.++.|++++|.+. .+|..+..++.|++|+|++|.++ .+|..|..+.+|++|+|++|.++ .+|..|..+++|++|+|+
T Consensus 225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 4455555555555 44444445555555555555555 55555555555555555555555 445555555555555555
Q ss_pred CCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 147 KNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 147 ~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+|.++ .+|..|+.+++|++|+|++|+|+
T Consensus 302 ~N~l~-------------~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 302 DNMVT-------------TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSCCC-------------CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCC-------------ccChhhhcCCCccEEeCCCCccC
Confidence 55554 66777899999999999999874
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=3.8e-14 Score=118.60 Aligned_cols=122 Identities=25% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccc--cCCcccCCCCCCCEEeccCCcCCCCCCc-cccCCCCCC
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNG--TIPSSIFSLNSLQILDLSDNQLSGSFPS-SIFNMSSLK 141 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~ 141 (187)
..+++.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++.+|. .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 5678889999999888788888888999999999998885 2345678888999999999988874554 477778888
Q ss_pred EEECCCCcccccCCCCCC----------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 142 VADFRKNRLSGEFPANIP----------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 142 ~L~l~~n~l~g~~p~~~~----------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+|++++|++++.+|..+. |.++ .+|..+..+++|++|++++|+++
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 888888888776665442 5554 56666667777777777777653
No 60
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=3.8e-14 Score=105.34 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=98.9
Q ss_pred EEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCC-cccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 69 TVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIP-SSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
+.++++++.++ .+|..+. ..++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 37999999998 5776553 456899999999997654 4578999999999999999987777899999999999999
Q ss_pred CcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 148 NRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 148 n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
|.+++..|..+. |.+.+..|..+..+++|++|+|++|+++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 999865554332 8899888999999999999999999874
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=2.6e-14 Score=109.31 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=68.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCC-CCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGS-FPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~ 144 (187)
.+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 4566666666666654445566666666666666666544444566666666666666666542 466666666666666
Q ss_pred CCCCcccccCCCCCC----------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP----------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~----------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|++++..+..+. |.+.+..+ ......+|+.|++++|+++
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLK 213 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCS
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCcee
Confidence 666666543222111 34433322 2233346777777777653
No 62
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=7.1e-14 Score=101.90 Aligned_cols=103 Identities=27% Similarity=0.346 Sum_probs=89.6
Q ss_pred EEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCC
Q 038329 69 TVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKN 148 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 148 (187)
+.++++++++. .+|..+. +.|+.|++++|.++ .+|..|..+.+|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46899999988 6776553 68999999999998 78889999999999999999999877788999999999999999
Q ss_pred cccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 149 RLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 149 ~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++++. .|..+..+++|++|+|++|+|+
T Consensus 89 ~l~~i------------~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 89 RLRCI------------PPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCCBC------------CTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCEe------------CHHHhCCCCCCCEEECCCCCCC
Confidence 99832 2345678999999999999874
No 63
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=4.7e-14 Score=100.81 Aligned_cols=104 Identities=24% Similarity=0.244 Sum_probs=89.1
Q ss_pred CCCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEe
Q 038329 50 NTSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120 (187)
Q Consensus 50 ~~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 120 (187)
..+.|.|+.+.|.. ....++.|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 5 ~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 5 SQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp -CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 34667888888751 235789999999999987788899999999999999999966666778999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCccccc
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGE 153 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~ 153 (187)
+++|.+++..+..|..+++|++|++++|+++..
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999976666799999999999999999743
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=4.9e-14 Score=110.41 Aligned_cols=133 Identities=21% Similarity=0.305 Sum_probs=100.3
Q ss_pred CCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEec
Q 038329 51 TSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDL 121 (187)
Q Consensus 51 ~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 121 (187)
.+.|.|..+.|.. ....++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4567888888851 2346889999999999766668999999999999999999777889999999999999
Q ss_pred cCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCC--CcCchhccCCccCceeeeecccC
Q 038329 122 SDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLP--GAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 122 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~--~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++|.++ .+|..+. ++|++|++++|.+++..+..+. |.+. +..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 999988 5666543 6788888888887743332111 4443 25566677777777777777765
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.53 E-value=4e-14 Score=118.06 Aligned_cols=121 Identities=23% Similarity=0.315 Sum_probs=82.0
Q ss_pred cEEEEEecCCCccccCC-ccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCC-CCCCccccCCCCCCEEE
Q 038329 67 RVTVLNISHLNLTGSIP-SQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS-GSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~ 144 (187)
+++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 45555555555554333 34566667777777777776666666677777777777777766 45667777777777777
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|++++..|..+. |.+++..|..+..+++|+.|++++|+++
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 777777766565543 6677776777778888888888888763
No 66
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.7e-14 Score=102.51 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=96.1
Q ss_pred CCcEEEEEecCCCcc-ccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLT-GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 143 (187)
..+++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467899999999998 78888889999999999999999855 778999999999999999997788888889999999
Q ss_pred ECCCCcccccCCCCCCCCCCCcCc--hhccCCccCceeeeecccCC
Q 038329 144 DFRKNRLSGEFPANIPNKLPGAMQ--KGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~n~~~~~ip--~~l~~l~~L~~L~l~~N~l~ 187 (187)
++++|.++ .+| ..+..+++|++|++++|+++
T Consensus 101 ~Ls~N~l~-------------~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 101 NLSGNKLK-------------DISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp ECBSSSCC-------------SSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred eccCCccC-------------cchhHHHHhcCCCCCEEEeeCCcCc
Confidence 99999997 323 56889999999999999864
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=112.29 Aligned_cols=122 Identities=17% Similarity=0.232 Sum_probs=101.6
Q ss_pred CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCc--cccCCCCCC
Q 038329 64 HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPS--SIFNMSSLK 141 (187)
Q Consensus 64 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~ 141 (187)
...+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++. +|. .+..+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCc
Confidence 35689999999999997777789999999999999999985444458899999999999999994 554 788999999
Q ss_pred EEECCCCc-ccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 142 VADFRKNR-LSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 142 ~L~l~~n~-l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+|++++|+ +++..|..+. |.+.+..|..+..+++|++|++++|.+
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999995 6544444443 888888899999999999999988875
No 68
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.53 E-value=7e-14 Score=110.25 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=83.1
Q ss_pred EecCC-CccccCCccccCCCCCCEEeCcC-CcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCc
Q 038329 72 NISHL-NLTGSIPSQLGNLSSLQALDLSF-NRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNR 149 (187)
Q Consensus 72 ~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 149 (187)
+.+++ ++. .+|. +..+++|+.|+|++ |.+.+..+..|..+.+|+.|+|++|.+++..|..|..+++|++|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 33444 566 5787 99999999999996 99997777889999999999999999998888899999999999999999
Q ss_pred ccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 150 LSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 150 l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++ .+|+.. +..++ |+.|+|++|+++
T Consensus 92 l~-~~~~~~-----------~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LE-SLSWKT-----------VQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CS-CCCSTT-----------TCSCC-CCEEECCSSCCC
T ss_pred cc-eeCHHH-----------cccCC-ceEEEeeCCCcc
Confidence 98 333322 33344 999999999874
No 69
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.53 E-value=9e-14 Score=109.04 Aligned_cols=132 Identities=25% Similarity=0.297 Sum_probs=98.0
Q ss_pred CCCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEec
Q 038329 51 TSVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDL 121 (187)
Q Consensus 51 ~~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 121 (187)
.+.|.|..+.|.. ...+++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4557888888851 1347899999999999776778999999999999999999777888999999999999
Q ss_pred cCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCC--CcCchhccCCccCceeeeecccC
Q 038329 122 SDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLP--GAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 122 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~--~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++|.++ .+|..+. ++|++|++++|.+++..+..+. |.+. +..|..+..+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999998 6676554 7899999999998732222121 3332 2444455555 666666666654
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=3.3e-14 Score=103.72 Aligned_cols=117 Identities=14% Similarity=0.235 Sum_probs=97.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.++++++.+. .+| .+..+++|++|++++|.+. .++.+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 46889999999998 566 6889999999999999775 3457889999999999999999878889999999999999
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|.+++..|..+. |.+.+.+| .+..+++|++|++++|+++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 99999875554322 55455666 6888889999999988764
No 71
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4.8e-14 Score=101.12 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=69.9
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCc--cccCCCCCCEEE
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPS--SIFNMSSLKVAD 144 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~ 144 (187)
+++.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 567777777777743 45667777777777777777443333466777777777777775 4454 566777777777
Q ss_pred CCCCcccccCCCCCCCCCCCcCch----hccCCccCceeeeeccc
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQK----GIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~----~l~~l~~L~~L~l~~N~ 185 (187)
+++|+++ .+|. .+..+++|++||+++|.
T Consensus 120 l~~N~i~-------------~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVT-------------NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGG-------------GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCCCC-------------CcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777776 3333 26778888888888775
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.52 E-value=1e-13 Score=113.13 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=55.8
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|+
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 46778888888888866667778888888888888888755555677778888888888777644333333333333333
Q ss_pred CC
Q 038329 145 FR 146 (187)
Q Consensus 145 l~ 146 (187)
++
T Consensus 178 l~ 179 (452)
T 3zyi_A 178 LG 179 (452)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=6.9e-14 Score=117.61 Aligned_cols=109 Identities=25% Similarity=0.346 Sum_probs=61.3
Q ss_pred cEEEEEecCCCcc-ccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 67 RVTVLNISHLNLT-GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 67 ~l~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++.+++++|.+. +..|..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|++
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 3444555554432 223444455555555555555555444555555555555555555555444444555555555555
Q ss_pred CCCcccccCCCCCCCCCCCcCchhccCC-ccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIPNKLPGAMQKGIGNL-TKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~n~~~~~ip~~l~~l-~~L~~L~l~~N~l~ 187 (187)
++|+++ +..|..+..+ ++|++|+|++|+++
T Consensus 550 s~N~l~------------~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 550 SLNHIM------------TSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCC------------BCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCC------------CCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 555554 5556666666 68999999999874
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=4e-14 Score=117.15 Aligned_cols=107 Identities=30% Similarity=0.316 Sum_probs=87.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++++|++++|.+.+..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57889999999998766678889999999999999998777888999999999999999998 56665 7899999999
Q ss_pred CCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 146 RKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++|.+++. .+|..++.+++|++|++++|++
T Consensus 98 ~~N~l~~~-----------~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 98 SFNAFDAL-----------PICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CSSCCSSC-----------CCCGGGGGCTTCCEEEEEESSC
T ss_pred cCCccccc-----------cchhhhccCCcceEEEecCccc
Confidence 99998731 3455666777777777777665
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=3.6e-14 Score=117.11 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=94.1
Q ss_pred CceeeEeCCCCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccC-CCCCCCEEeccCCcCCCCCCcc
Q 038329 55 NWMGVTCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQLSGSFPSS 133 (187)
Q Consensus 55 ~w~g~~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~ 133 (187)
.+.++.+.. ..+++.|++++|.+++..|..+..++.|++|++++|.+++..|..+. .+++|+.|++++|.+++. | .
T Consensus 110 ~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~ 186 (487)
T 3oja_A 110 NISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-G 186 (487)
T ss_dssp CCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-C
T ss_pred cCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-c
Confidence 344444432 45678888888888877777788888888888888888877777765 678888888888888855 2 2
Q ss_pred ccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 134 IFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 134 l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+..+++|++|++++|.+++..| .+. |.+++ +|..+..+++|+.|++++|+++
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 3457888888888888875433 232 66664 6777888888899998888763
No 76
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=4.2e-13 Score=98.51 Aligned_cols=116 Identities=24% Similarity=0.240 Sum_probs=95.2
Q ss_pred EEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCC
Q 038329 69 TVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKN 148 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 148 (187)
+.++..++++. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46788888887 556544 468999999999999666667889999999999999999666667889999999999999
Q ss_pred cccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 149 RLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 149 ~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++++..+..+. |.+.+..+..+..+++|++|++++|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 99854443332 7888777777899999999999999874
No 77
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.51 E-value=8.2e-14 Score=117.24 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=108.2
Q ss_pred CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 038329 64 HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 64 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 143 (187)
...++++|++++|.+.+..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 35689999999999998888889999999999999999998889899999999999999999997667889999999999
Q ss_pred ECCCCccccc-CCCCCC-----------CCCCCcCchhccCCccCc--eeeeecccCC
Q 038329 144 DFRKNRLSGE-FPANIP-----------NKLPGAMQKGIGNLTKLE--KLYLGHNRLQ 187 (187)
Q Consensus 144 ~l~~n~l~g~-~p~~~~-----------n~~~~~ip~~l~~l~~L~--~L~l~~N~l~ 187 (187)
++++|.+++. +|..+. |.+.+..|..++.+++|+ .|++++|.++
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 9999999863 344332 788888888899999999 8999998764
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.50 E-value=5.6e-14 Score=116.86 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=98.0
Q ss_pred CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCC-CCCccccCCCCCCE
Q 038329 64 HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSG-SFPSSIFNMSSLKV 142 (187)
Q Consensus 64 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~ 142 (187)
...++++|++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 35678999999999997777889999999999999999987666668999999999999999886 35678889999999
Q ss_pred EECCCCcccccCCC-CCC------------CCCCCcCchhccCCccCceeeeeccc
Q 038329 143 ADFRKNRLSGEFPA-NIP------------NKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 143 L~l~~n~l~g~~p~-~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
|++++|.+.+.+|. .+. |.+.+.+|..++.+++|+.|++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 99999986556664 343 78888888877776666666555554
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=3.8e-14 Score=112.68 Aligned_cols=122 Identities=26% Similarity=0.301 Sum_probs=102.1
Q ss_pred CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 038329 64 HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 64 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 143 (187)
...+++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+.+|+.|++++|.+++..|..|..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 35779999999999997767789999999999999999987777778999999999999999998778889999999999
Q ss_pred ECCCCcccccCCCC-C------C---------CCCCCcCchhccCCcc--CceeeeecccC
Q 038329 144 DFRKNRLSGEFPAN-I------P---------NKLPGAMQKGIGNLTK--LEKLYLGHNRL 186 (187)
Q Consensus 144 ~l~~n~l~g~~p~~-~------~---------n~~~~~ip~~l~~l~~--L~~L~l~~N~l 186 (187)
++++|++++ +|.. + . |.+.+..+..+..++. |+.|+|++|++
T Consensus 142 ~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 142 YLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 999999984 4432 1 1 7777666667777877 48899999986
No 80
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=4.2e-14 Score=118.79 Aligned_cols=104 Identities=31% Similarity=0.412 Sum_probs=81.1
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
.++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 46678888888874 565 788888888888888887 778888888888888888888885 56 78888888888888
Q ss_pred CCcccccCCCCCCCCCCCcC-chhccCCccCceeeeecccCC
Q 038329 147 KNRLSGEFPANIPNKLPGAM-QKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 147 ~n~l~g~~p~~~~n~~~~~i-p~~l~~l~~L~~L~l~~N~l~ 187 (187)
+|++++ .+ |..++.+++|+.|+|++|+++
T Consensus 517 ~N~l~~------------~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 517 NNRLQQ------------SAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SSCCCS------------SSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCC------------CCCcHHHhcCCCCCEEEecCCcCC
Confidence 888872 22 566777888888888888763
No 81
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=1.9e-14 Score=125.99 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=104.5
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCc-ccc-cCCcccCCC-------CCCCEEeccCCcCCCCCCc--c
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNR-FNG-TIPSSIFSL-------NSLQILDLSDNQLSGSFPS--S 133 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~~p~--~ 133 (187)
..+++.|++++|.+.+.+|..|..+++|+.|++++|. +++ .+|..+..+ ++|+.|++++|.++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 5679999999999999999999999999999999998 887 777655544 49999999999999 8888 8
Q ss_pred ccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhccCCcc-CceeeeecccCC
Q 038329 134 IFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTK-LEKLYLGHNRLQ 187 (187)
Q Consensus 134 l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~-L~~L~l~~N~l~ 187 (187)
+..+++|++|++++|+++ .+| .+. |.+. .+|..+..+++ |+.|+|++|+++
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 999999999999999998 888 543 7777 88988999998 999999999864
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=111.73 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=47.2
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|+
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 45567777777777655555666677777777777766644444566666666666666666543333333333333333
Q ss_pred C
Q 038329 145 F 145 (187)
Q Consensus 145 l 145 (187)
+
T Consensus 167 l 167 (440)
T 3zyj_A 167 L 167 (440)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.49 E-value=3.6e-14 Score=110.60 Aligned_cols=38 Identities=26% Similarity=0.176 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCccc
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFN 103 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 103 (187)
.++++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 44555666666655444455555666666666666544
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=115.51 Aligned_cols=107 Identities=29% Similarity=0.332 Sum_probs=77.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 46777788887777655567777777888888888777666777777778888888887777 55555 6777888888
Q ss_pred CCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 146 RKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++|++++. .+|..++.+++|++|++++|++
T Consensus 129 s~N~l~~l-----------~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 129 SFNDFDVL-----------PVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CSSCCSBC-----------CCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCCcccc-----------CchHhhcccCcccEEecCCCcc
Confidence 87777621 3345667777777777777765
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.49 E-value=2.6e-14 Score=111.43 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=95.5
Q ss_pred CCcEEEEEecCCCccccCCccc--cCCCCCCEEeCcCCcccccCCcccCCC-----CCCCEEeccCCcCCCCCCccccCC
Q 038329 65 SHRVTVLNISHLNLTGSIPSQL--GNLSSLQALDLSFNRFNGTIPSSIFSL-----NSLQILDLSDNQLSGSFPSSIFNM 137 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~l~~l 137 (187)
..++++|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5678999999999998888876 8899999999999999866 7766666 899999999999998777899999
Q ss_pred CCCCEEECCCCcccccC--CC-----CCC---------CCCCC--cCc-hhccCCccCceeeeecccCC
Q 038329 138 SSLKVADFRKNRLSGEF--PA-----NIP---------NKLPG--AMQ-KGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 138 ~~L~~L~l~~n~l~g~~--p~-----~~~---------n~~~~--~ip-~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|++|++++|++.+.+ |. .+. |.+.+ .++ ..+..+++|++|++++|+++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 99999999999976542 11 111 66652 233 23356788888888888764
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=9.2e-14 Score=108.13 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=56.2
Q ss_pred cEEEEEecCCCccccCCccc--cCCCCCCEEeCcCCcccccCC----cccCCCCCCCEEeccCCcCCCCCCccccCCCCC
Q 038329 67 RVTVLNISHLNLTGSIPSQL--GNLSSLQALDLSFNRFNGTIP----SSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSL 140 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 140 (187)
++++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 36777777777776666666 667777777777777765433 233456667777777777765555666666777
Q ss_pred CEEECCCCccc
Q 038329 141 KVADFRKNRLS 151 (187)
Q Consensus 141 ~~L~l~~n~l~ 151 (187)
++|++++|++.
T Consensus 172 ~~L~Ls~N~l~ 182 (310)
T 4glp_A 172 TSLDLSDNPGL 182 (310)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECCCCCCc
Confidence 77777777654
No 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=3.6e-13 Score=113.57 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=85.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 46788888888888766667888888888888888888766777788888888888888888554455688888888888
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
++|.+++..|..+. |.+.+.- ++.+++|+.|++++|.+
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 88888866665543 5555432 34445555555554443
No 88
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=6.3e-13 Score=95.21 Aligned_cols=104 Identities=27% Similarity=0.347 Sum_probs=86.6
Q ss_pred EEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCC
Q 038329 69 TVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKN 148 (187)
Q Consensus 69 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 148 (187)
+.++++++++. .+|..+ .+.|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 57889999988 566544 378999999999999666667889999999999999999766667899999999999999
Q ss_pred cccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 149 RLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 149 ~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++++. | +..+..+++|++|++++|+++
T Consensus 87 ~l~~~-~-----------~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 87 KLQSL-P-----------NGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp CCCCC-C-----------TTTTTTCTTCCEEECCSSCCS
T ss_pred Ccccc-C-----------HHHhhCCcccCEEECcCCcce
Confidence 99822 2 233578899999999999874
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.47 E-value=1.5e-13 Score=117.24 Aligned_cols=121 Identities=20% Similarity=0.236 Sum_probs=76.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++++|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 45667777777766655666666777777777777766333335666777777777777766555556666777777777
Q ss_pred CCCcccccCCCCCC------------CCCCCcCchhcc--CCccCceeeeecccC
Q 038329 146 RKNRLSGEFPANIP------------NKLPGAMQKGIG--NLTKLEKLYLGHNRL 186 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------n~~~~~ip~~l~--~l~~L~~L~l~~N~l 186 (187)
++|.+++..|..+. |.+++..+..++ .+++|+.|++++|++
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 77766655554432 555555555443 346777777777654
No 90
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=5.5e-13 Score=106.67 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=58.7
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 45666777777766555556666777777777777776555555666777777777777766332233466667777777
Q ss_pred CCCcccccCCCCC
Q 038329 146 RKNRLSGEFPANI 158 (187)
Q Consensus 146 ~~n~l~g~~p~~~ 158 (187)
++|.+++..|..+
T Consensus 149 ~~n~l~~~~~~~~ 161 (390)
T 3o6n_A 149 SNNNLERIEDDTF 161 (390)
T ss_dssp CSSCCCBCCTTTT
T ss_pred CCCccCccChhhc
Confidence 7776664444333
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=4.9e-14 Score=101.05 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=89.1
Q ss_pred CCcEEEEEecCCCccccCCccccCCC-CCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLS-SLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 143 (187)
..+++.|++++|.+. .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 456899999999998 4554 55555 999999999999864 678999999999999999996544555899999999
Q ss_pred ECCCCcccccCCCCCCCCCCCcCch--hccCCccCceeeeecccCC
Q 038329 144 DFRKNRLSGEFPANIPNKLPGAMQK--GIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~n~~~~~ip~--~l~~l~~L~~L~l~~N~l~ 187 (187)
++++|.++ .+|. .+..+++|+.|++++|+++
T Consensus 94 ~L~~N~i~-------------~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNSLV-------------ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCCCC-------------CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcCC-------------cchhhHhhhcCCCCCEEEecCCCCC
Confidence 99999996 4454 6788999999999999863
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=6.8e-14 Score=115.49 Aligned_cols=116 Identities=22% Similarity=0.197 Sum_probs=68.1
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCC-------------------
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLS------------------- 127 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~------------------- 127 (187)
+++.|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 45556666665554444555555566666666665554333 555555555555555544
Q ss_pred CCCCccccCCCCCCEEECCCCcccccCCCCCC------------CCCCCcCchhcc-CCccCceeeeecccCC
Q 038329 128 GSFPSSIFNMSSLKVADFRKNRLSGEFPANIP------------NKLPGAMQKGIG-NLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 128 ~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~-~l~~L~~L~l~~N~l~ 187 (187)
+..+ ..+++|++|++++|.+++..|..+. |.+++.+|..+. .+++|+.|+|++|.|+
T Consensus 113 ~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 113 RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 2222 2345667777777777655554442 677777776665 6777778887777763
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=1.8e-13 Score=102.60 Aligned_cols=120 Identities=19% Similarity=0.229 Sum_probs=90.0
Q ss_pred CCcEEEEEecC-CCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCC---EEeccCC-cCCCCCCccccCCCC
Q 038329 65 SHRVTVLNISH-LNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQ---ILDLSDN-QLSGSFPSSIFNMSS 139 (187)
Q Consensus 65 ~~~l~~l~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~ 139 (187)
..+++.|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..+.+|+ .|++++| .+++..+..|..+++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence 35677777777 77775555567777778888888877774 554 67777777 8888888 787665566888899
Q ss_pred CC-EEECCCCcccccCCCCCC------------CC-CCCcCchhccCC-ccCceeeeecccCC
Q 038329 140 LK-VADFRKNRLSGEFPANIP------------NK-LPGAMQKGIGNL-TKLEKLYLGHNRLQ 187 (187)
Q Consensus 140 L~-~L~l~~n~l~g~~p~~~~------------n~-~~~~ip~~l~~l-~~L~~L~l~~N~l~ 187 (187)
|+ +|++++|.++ .+|...+ |. +.+..+..+..+ ++|+.|++++|+++
T Consensus 157 L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 157 ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp SEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred ceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 99 9999999998 6665432 63 776666778888 99999999999874
No 94
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=4e-14 Score=122.05 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhhhcCCCCCCcccCCCCC-CCCCCCceeeEeCC----------------CCCcEEEEEecCCCccc----
Q 038329 22 TTDQDALLTLKPHIAHEPGNLLAKNWTS-NTSVCNWMGVTCDV----------------HSHRVTVLNISHLNLTG---- 80 (187)
Q Consensus 22 ~~~~~~l~~~~~~l~~~~~~~~~~~w~~-~~~~c~w~g~~c~~----------------~~~~l~~l~l~~~~l~~---- 80 (187)
+.+..++.+++....+....... .|.. ....+.|.++.+.. ....+..++++.+.+.+
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~ 209 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQ-QPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDI 209 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccC-CCcCCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCcccc
Confidence 45567778877766322222222 4532 23345566554431 01122334444444332
Q ss_pred -----cCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCC
Q 038329 81 -----SIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFP 155 (187)
Q Consensus 81 -----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p 155 (187)
..+..+..+..|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---- 283 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT---- 283 (727)
T ss_dssp ------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS----
T ss_pred ccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC----
Confidence 23556888899999999999998 78888889999999999999999 88999999999999999999997
Q ss_pred CCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 156 ANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 156 ~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
.+|..++.+++|++|+|++|.|+
T Consensus 284 ---------~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 284 ---------SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp ---------SCCSSGGGGTTCSEEECCSSCCC
T ss_pred ---------ccChhhcCCCCCCEEECCCCCCC
Confidence 55667789999999999999874
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=4.4e-14 Score=98.44 Aligned_cols=108 Identities=21% Similarity=0.189 Sum_probs=90.3
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCC-CCccccCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGS-FPSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L 143 (187)
..+++.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 57899999999999855 6789999999999999999977888777899999999999999963 34789999999999
Q ss_pred ECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeec
Q 038329 144 DFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGH 183 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~ 183 (187)
++++|++++..+ .....+..+++|++|++++
T Consensus 119 ~l~~N~l~~~~~---------~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLND---------YRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTT---------HHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHH---------HHHHHHHHCCCcccccCCC
Confidence 999999982211 0013678899999999864
No 96
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=4.1e-13 Score=105.11 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=86.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 46778888888888766777888888888888888888776767888888888888888888 77888888888889999
Q ss_pred CCCcccccCCCCCC------------------CCCC--CcCchhccCCccCceeeeeccc
Q 038329 146 RKNRLSGEFPANIP------------------NKLP--GAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------------n~~~--~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
++|++++..+..+. |.+. ...|..+..+.+++.++|++|+
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 88888743333221 3332 1334566667777777777664
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=107.61 Aligned_cols=120 Identities=25% Similarity=0.277 Sum_probs=74.7
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCccccc--C--Ccc---------------------------cCCC
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGT--I--PSS---------------------------IFSL 113 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~---------------------------l~~l 113 (187)
..+++.|++++|.+.+..+..|..+++|++|++++|.+.+. + +.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 45678888888888766667777888888888888876431 1 111 1234
Q ss_pred CCCCEEeccCCcCCCCCCccccCC---CCCCEEECCCCcccccCCCCCC----------CCCCCcCchhccCCccCceee
Q 038329 114 NSLQILDLSDNQLSGSFPSSIFNM---SSLKVADFRKNRLSGEFPANIP----------NKLPGAMQKGIGNLTKLEKLY 180 (187)
Q Consensus 114 ~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~l~~n~l~g~~p~~~~----------n~~~~~ip~~l~~l~~L~~L~ 180 (187)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. |.+++. |. +..+++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSC-CC-TTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCC-ch-hhhCCCccEEE
Confidence 566666666666665555555555 46677777777666 5555432 555542 22 45667777777
Q ss_pred eecccCC
Q 038329 181 LGHNRLQ 187 (187)
Q Consensus 181 l~~N~l~ 187 (187)
+++|+|+
T Consensus 301 L~~N~l~ 307 (310)
T 4glp_A 301 LDGNPFL 307 (310)
T ss_dssp CSSTTTS
T ss_pred CcCCCCC
Confidence 7777664
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=2.8e-13 Score=107.20 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=69.8
Q ss_pred CCCCceeeEeCC---------CCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCc-ccCCCCCCCE-Ee
Q 038329 52 SVCNWMGVTCDV---------HSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPS-SIFSLNSLQI-LD 120 (187)
Q Consensus 52 ~~c~w~g~~c~~---------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~-L~ 120 (187)
+.|.+..|.|.. ...+++.|++++|+++...+..|..+++|++|++++|.+.+.++. .|..+++++. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 567888888841 124688999999999954445689999999999999998655543 4556666554 44
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCccc
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLS 151 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 151 (187)
+..|.++...|..|..+++|++|++++|+++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred ccCCcccccCchhhhhccccccccccccccc
Confidence 5556666555566666666777776666665
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.44 E-value=2.3e-13 Score=106.77 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=92.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 46788888888888776778889999999999999998777778888999999999999998 78888999999999999
Q ss_pred CCCcccccCCCCCC------------------CCCC--CcCchhccCCccCceeeeeccc
Q 038329 146 RKNRLSGEFPANIP------------------NKLP--GAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 146 ~~n~l~g~~p~~~~------------------n~~~--~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
++|++++..+..+. |.+. +..|..+..+++|+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999844332221 4444 4556667778888888887774
No 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.43 E-value=3.8e-13 Score=117.63 Aligned_cols=122 Identities=24% Similarity=0.276 Sum_probs=80.2
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcc--cCCCCCCCEEeccCCcCCCCCC-ccccCCCCCC
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSS--IFSLNSLQILDLSDNQLSGSFP-SSIFNMSSLK 141 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~ 141 (187)
..+++.|++++|.+.+..|..|..+++|++|++++|.+.+.++.. +..+++|++|++++|.+.+..+ ..++.+++|+
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 456677777777777666666777777777777777776555443 6677777777777777765443 4567777777
Q ss_pred EEECCCCcccccCCCCCC--------------CCCCCcCchhccCCcc------CceeeeecccC
Q 038329 142 VADFRKNRLSGEFPANIP--------------NKLPGAMQKGIGNLTK------LEKLYLGHNRL 186 (187)
Q Consensus 142 ~L~l~~n~l~g~~p~~~~--------------n~~~~~ip~~l~~l~~------L~~L~l~~N~l 186 (187)
+|++++|.+++..|..+. |.+.+.+|..++.+++ |+.|++++|.+
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 777777777655443321 5666666666665555 77888877754
No 101
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.2e-12 Score=93.89 Aligned_cols=86 Identities=23% Similarity=0.231 Sum_probs=77.3
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 57899999999999877888999999999999999999655556789999999999999999665556999999999999
Q ss_pred CCCccc
Q 038329 146 RKNRLS 151 (187)
Q Consensus 146 ~~n~l~ 151 (187)
++|++.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 999997
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=6.7e-13 Score=103.58 Aligned_cols=119 Identities=22% Similarity=0.228 Sum_probs=83.7
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccC-CCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF-SLNSLQILDLSDNQLSGSFPSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 143 (187)
..+++.|++++|.+.+..+..+..++.|++|++++|.+.+..+..+. .+++|++|++++|.+++. + ....+++|++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEE
Confidence 35677888888888766566677777888888888887765555553 567777777777777743 2 23346777777
Q ss_pred ECCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 144 DFRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++++|++++ +|..+. |.+. .+|..+..+++|+.|++++|+++
T Consensus 197 ~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 777777763 333232 5555 57778888999999999999863
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=4.6e-13 Score=112.43 Aligned_cols=93 Identities=28% Similarity=0.452 Sum_probs=46.2
Q ss_pred CCCCCCCCC-----Cceee-EeCCCCCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEE
Q 038329 46 NWTSNTSVC-----NWMGV-TCDVHSHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQIL 119 (187)
Q Consensus 46 ~w~~~~~~c-----~w~g~-~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 119 (187)
+|..+..+| .|.++ .|. ..+++.|++++|++++ +|..+ +++|++|++++|.++ .+| ..+++|+.|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 344344455 57777 554 2345666666666653 44433 245555555555555 344 234455555
Q ss_pred eccCCcCCCCCCccccCCCCCCEEECCCCccc
Q 038329 120 DLSDNQLSGSFPSSIFNMSSLKVADFRKNRLS 151 (187)
Q Consensus 120 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 151 (187)
++++|.+++ +|. +.. +|++|++++|+++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCC
Confidence 555555543 333 322 4444444444444
No 104
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=1e-12 Score=102.57 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=95.9
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccc-cCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSI-FNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L 143 (187)
...++.|++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 35788899999998855443 36789999999999997777788899999999999999997766666 478999999
Q ss_pred ECCCCcccccCCCCCC-----------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 144 DFRKNRLSGEFPANIP-----------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~-----------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++++|.+++. |.... |.+++ +|..+..+++|+.|++++|+++
T Consensus 175 ~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 175 NLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp ECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred ECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence 9999999854 32221 77765 5556889999999999999874
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=2.1e-12 Score=99.71 Aligned_cols=80 Identities=26% Similarity=0.335 Sum_probs=43.2
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+. ++ +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEc
Confidence 4566666666666532 22 5556666666666666552 22 255555555555555555532 33445555555555
Q ss_pred CCCccc
Q 038329 146 RKNRLS 151 (187)
Q Consensus 146 ~~n~l~ 151 (187)
++|+++
T Consensus 142 ~~n~l~ 147 (291)
T 1h6t_A 142 GNNKIT 147 (291)
T ss_dssp CSSCCC
T ss_pred cCCcCC
Confidence 555554
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=1.7e-12 Score=109.01 Aligned_cols=105 Identities=25% Similarity=0.291 Sum_probs=90.6
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCC-CccccCCCCCCEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSF-PSSIFNMSSLKVA 143 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L 143 (187)
..+++.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 567999999999999 889999999999999999999995 66 8999999999999999999776 9999999999999
Q ss_pred ECCCCcccccCCCCCCCCCCCcCchhccCCccCceeee
Q 038329 144 DFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYL 181 (187)
Q Consensus 144 ~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l 181 (187)
++++|++++..|. +...+..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~~---------~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGI---------QERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSC---------TTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccH---------HHHHHHHCcccCccCC
Confidence 9999999854331 1223455888999874
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=4.7e-12 Score=96.46 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=77.1
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+. ++ +..+++|++|++++|.+++ ++. +.. .+|+.|++++|.+++ + ..+..+++|++|+
T Consensus 62 l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILS 134 (263)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEE
Confidence 45688888888888843 33 7888888888888888874 443 223 778888888888874 3 3577788888888
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|++++. +. +. |.+.+. ..+..+++|+.|++++|++
T Consensus 135 Ls~N~i~~~-~~-l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 135 IRNNKLKSI-VM-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CTTSCCCBC-GG-GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CCCCcCCCC-hH-HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 888887742 21 11 555444 4567777777777777764
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.36 E-value=5e-12 Score=98.36 Aligned_cols=80 Identities=25% Similarity=0.435 Sum_probs=37.7
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+ ++. +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 63 ~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEEC
Confidence 345555555555552 222 4555555555555555542 22 34445555555555555442 22 1444444444444
Q ss_pred CCCccc
Q 038329 146 RKNRLS 151 (187)
Q Consensus 146 ~~n~l~ 151 (187)
++|.++
T Consensus 137 ~~n~l~ 142 (308)
T 1h6u_A 137 DLNQIT 142 (308)
T ss_dssp CSSCCC
T ss_pred CCCccC
Confidence 444444
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=4.8e-12 Score=96.40 Aligned_cols=112 Identities=25% Similarity=0.311 Sum_probs=89.9
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+. .++ .+..+++|+.|++++|.+++ +++ +..+++|++|++++|.+++ +|... . ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEE
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEE
Confidence 457889999999998 455 68899999999999999985 444 8999999999999999995 45433 3 8999999
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|.+++ ++. +. |.+++. | .+..+++|+.|++++|+++
T Consensus 113 L~~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 113 LDNNELRD-TDS-LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSB-SGG-GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ccCCccCC-Chh-hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 99999985 332 21 666653 4 5788888999999888764
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.34 E-value=2e-12 Score=101.64 Aligned_cols=115 Identities=25% Similarity=0.373 Sum_probs=82.1
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+. +. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 220 ~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEE
Confidence 45678888888888743 33 7778888888888888874 3 4577788888888888888743 4577778888888
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|.+++..|..+. |.+++..| +..+++|++|++++|+|+
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888887754433211 66666555 788899999999999874
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=3.4e-12 Score=98.60 Aligned_cols=112 Identities=20% Similarity=0.361 Sum_probs=86.1
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+ ++ .+..+++|++|++++|.+.+ + +.+..+++|+.|++++|.+++. ..+..+++|++|+
T Consensus 89 l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (291)
T ss_dssp CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence 5678899999998874 33 48888999999999999874 3 4677888999999999988854 6788888899999
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|.+++..| +. |.+++ +| .+..+++|+.|++++|++
T Consensus 163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence 99998875433 21 55544 44 377888888888888865
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.33 E-value=4.9e-12 Score=98.40 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=44.8
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS 157 (308)
T ss_dssp CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence 4456666666666653 22 45566666666666666653 222 55555666666666555532 22 45555555555
Q ss_pred CCCCccc
Q 038329 145 FRKNRLS 151 (187)
Q Consensus 145 l~~n~l~ 151 (187)
+++|.++
T Consensus 158 l~~n~l~ 164 (308)
T 1h6u_A 158 IGNAQVS 164 (308)
T ss_dssp CCSSCCC
T ss_pred ccCCcCC
Confidence 5555554
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=6.8e-12 Score=106.10 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=40.8
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+..+ +..++.|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.+ + ..+..+++|+.|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 137 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEE
Confidence 3455666666666553222 5555555555555555542 22 34555555555555555542 2 2344445555555
Q ss_pred CCCCccc
Q 038329 145 FRKNRLS 151 (187)
Q Consensus 145 l~~n~l~ 151 (187)
+++|.++
T Consensus 138 Ls~N~l~ 144 (605)
T 1m9s_A 138 LGNNKIT 144 (605)
T ss_dssp CCSSCCC
T ss_pred CCCCccC
Confidence 5555444
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=2.7e-11 Score=99.09 Aligned_cols=111 Identities=27% Similarity=0.407 Sum_probs=87.5
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++++|++++|.+.+ +| .+..+++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .+..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 468888888888885 66 58888999999999998884 5543 3588999999999885 56 5889999999999
Q ss_pred CCCcccccCCCC---CC------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPAN---IP------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~---~~------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|.+++ +|.. +. |.+. .+|. ++.+++|++|++++|+++
T Consensus 203 ~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 203 DNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred CCCcCCc-CCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence 9999985 4432 22 6666 6774 888999999999998764
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=1.8e-11 Score=96.23 Aligned_cols=116 Identities=22% Similarity=0.419 Sum_probs=97.5
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.+++++|.+.+..+ +..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++ + ..+..+++|++|+
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN 271 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence 4678999999999985433 7889999999999999984 444 8899999999999999985 3 5689999999999
Q ss_pred CCCCcccccCCC-----CCC------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 145 FRKNRLSGEFPA-----NIP------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 145 l~~n~l~g~~p~-----~~~------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+++|.+++ ++. .+. |.+.+..|..++.+++|++|++++|+++
T Consensus 272 l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 272 VGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred ccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 99999984 332 111 8888888899999999999999999874
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=1.3e-11 Score=104.41 Aligned_cols=112 Identities=20% Similarity=0.364 Sum_probs=88.2
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+ ++ .+..+++|+.|++++|.+.+ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+
T Consensus 86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 5678899999998884 33 68889999999999999874 3 4578889999999999998854 6788889999999
Q ss_pred CCCCcccccCCCCCC------------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIP------------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~------------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
|++|.+++..| +. |.+++ +| .+..+++|+.|+|++|++
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEE
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcC
Confidence 99998886544 21 56655 33 578888899999888865
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.25 E-value=1.3e-11 Score=100.96 Aligned_cols=81 Identities=27% Similarity=0.417 Sum_probs=41.4
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+..+ +..++.|+.|++++|.+.+. +. +..+++|+.|++++|.+++..+ +..+++|++|++
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 455666666666553322 55555555566655555532 22 4455555555555555553221 444555555555
Q ss_pred CCCcccc
Q 038329 146 RKNRLSG 152 (187)
Q Consensus 146 ~~n~l~g 152 (187)
++|++++
T Consensus 317 ~~n~l~~ 323 (466)
T 1o6v_A 317 YFNNISD 323 (466)
T ss_dssp CSSCCSC
T ss_pred cCCcCCC
Confidence 5555543
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=3.7e-11 Score=98.42 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=65.1
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.++++|++++|.+.+ +| .+..++.|++|++++|.+++ ++ +..+++|++|++++|.+++. + +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 446666666666664 33 46666666666666666664 22 56666666666666666642 2 566666666666
Q ss_pred CCCcccccCCCC-CC---------CCCCCcCchhccCCccCceeeeeccc
Q 038329 146 RKNRLSGEFPAN-IP---------NKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 146 ~~n~l~g~~p~~-~~---------n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
++|++++ +|-. +. |.+++ ++ ++.+++|++|++++|+
T Consensus 114 ~~N~l~~-l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 114 DTNKLTK-LDVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSSCCSC-CCCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCS
T ss_pred CCCcCCe-ecCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCC
Confidence 6666653 2210 00 44444 22 6778888888888883
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.25 E-value=2.6e-11 Score=99.24 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=39.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+.+. +. +..++.|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|++|++
T Consensus 265 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 265 TKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 3455555555555532 22 4455555555555555543222 4455555555555555554322 445555555555
Q ss_pred CCCccc
Q 038329 146 RKNRLS 151 (187)
Q Consensus 146 ~~n~l~ 151 (187)
++|+++
T Consensus 339 ~~n~l~ 344 (466)
T 1o6v_A 339 YNNKVS 344 (466)
T ss_dssp CSSCCC
T ss_pred CCCccC
Confidence 555554
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=3.6e-14 Score=103.66 Aligned_cols=104 Identities=26% Similarity=0.326 Sum_probs=87.2
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..+++.|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++ +| .+..+++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 4578899999999885 66 7888899999999999998 677777777899999999999985 44 678888999999
Q ss_pred CCCCcccccCCCCCCCCCCCcCc--hhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQ--KGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip--~~l~~l~~L~~L~l~~N~l 186 (187)
+++|+++ .+| ..+..+++|++|++++|++
T Consensus 122 l~~N~i~-------------~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 122 MSNNKIT-------------NWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ESEEECC-------------CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCcCC-------------chhHHHHHhcCCCCCEEEecCCcc
Confidence 9999987 333 3678899999999999975
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=3.7e-11 Score=100.87 Aligned_cols=107 Identities=25% Similarity=0.361 Sum_probs=85.0
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
+++.|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|++|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 56777777777774 555 57788999999999884 665 57899999999999995 777 65 899999999
Q ss_pred CCcccccCCC---CC-------C------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 147 KNRLSGEFPA---NI-------P------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 147 ~n~l~g~~p~---~~-------~------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
+|+++ .+|. .+ . |.++ .+|..+..+++|+.|+|++|+++
T Consensus 189 ~N~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 189 TNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SSCCS-SCCCCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCCC-chhhHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 99998 6665 22 1 5555 68888888999999999999875
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.23 E-value=1.2e-10 Score=95.27 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
..++++|++++|.+++ +| +..+++|++|++++|.+++. + +..+++|++|++++|.+++ +| +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 4567778888887775 33 67777788888888877743 3 6777777777777777774 33 67777777777
Q ss_pred CCCCcccccCCC-CCC---------CCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPA-NIP---------NKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~-~~~---------n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|++++ ++- .+. |...+.+ .++.+++|++|++++|++
T Consensus 134 l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 134 CARNTLTE-IDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CTTSCCSC-CCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred CCCCccce-eccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 77777765 221 110 3233443 245555566666555554
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.23 E-value=9.5e-11 Score=95.88 Aligned_cols=109 Identities=30% Similarity=0.408 Sum_probs=76.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEEC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADF 145 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 145 (187)
.+++.|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .+..+++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 567788888888875 5543 3677788888887763 3321 2578888888888874 66 4778888888888
Q ss_pred CCCcccccCCCCCC---------CCCCCcCchhccCCccCceeeeecccCC
Q 038329 146 RKNRLSGEFPANIP---------NKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 146 ~~n~l~g~~p~~~~---------n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
++|++++ +|..+. |.+.+ +| .++.+++|++|++++|+++
T Consensus 161 ~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 161 DNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCcCcc-cCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 8888874 554332 66655 55 5778888888888887753
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.20 E-value=1.4e-10 Score=98.35 Aligned_cols=68 Identities=28% Similarity=0.338 Sum_probs=52.0
Q ss_pred CCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCC---------CCCCCcCchhccCCccCceeeeecc
Q 038329 114 NSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIP---------NKLPGAMQKGIGNLTKLEKLYLGHN 184 (187)
Q Consensus 114 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~---------n~~~~~ip~~l~~l~~L~~L~l~~N 184 (187)
++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|..+. |.++ .+|..+..+++|+.|+|++|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 567777777777773 45 44577888888888887 5665332 7777 78999999999999999999
Q ss_pred cCC
Q 038329 185 RLQ 187 (187)
Q Consensus 185 ~l~ 187 (187)
+++
T Consensus 295 ~l~ 297 (622)
T 3g06_A 295 PLS 297 (622)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=1e-13 Score=101.22 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=70.9
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCC-ccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFP-SSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ 144 (187)
.+++.|++++|.+. .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++...+ ..+..+++|++|+
T Consensus 70 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 45777777777777 566656666777888888887774 33 46667778888888877773221 3567777788888
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+++|++++..|..- .........+..+++|+.|| +|.+
T Consensus 147 l~~N~l~~~~~~~~--~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 147 LAGNPLYNDYKENN--ATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp ECSCHHHHHHHTTT--THHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred ecCCcccccccccc--chHHHHHHHHHhCCCcEEEC--Cccc
Confidence 88887764332210 00000112356677777776 5543
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.19 E-value=1.3e-11 Score=104.68 Aligned_cols=73 Identities=30% Similarity=0.346 Sum_probs=36.1
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
+++.|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 4455555555554 3333 3445555555555554 3333 34555555555555552 333 33445555555
Q ss_pred CCccc
Q 038329 147 KNRLS 151 (187)
Q Consensus 147 ~n~l~ 151 (187)
+|+++
T Consensus 130 ~N~l~ 134 (622)
T 3g06_A 130 GNQLT 134 (622)
T ss_dssp SSCCS
T ss_pred CCCCC
Confidence 55554
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=7.8e-11 Score=92.71 Aligned_cols=98 Identities=21% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCCceeeEeCCC-----------CCcEEEEEecC-CCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEe
Q 038329 53 VCNWMGVTCDVH-----------SHRVTVLNISH-LNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILD 120 (187)
Q Consensus 53 ~c~w~g~~c~~~-----------~~~l~~l~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 120 (187)
.|.|..+.|... ..+++.|++++ |.+.+..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 578888888632 23589999996 999977777899999999999999999988888999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEECCCCccc
Q 038329 121 LSDNQLSGSFPSSIFNMSSLKVADFRKNRLS 151 (187)
Q Consensus 121 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 151 (187)
|++|.|++..+..+..++ |+.|++.+|++.
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999999965555555555 999999999987
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.16 E-value=5.3e-12 Score=100.88 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=77.1
Q ss_pred CcEEEEEecCCCcc-ccCC---ccccCCCCCCEEeCcCCcccc-----cCCcccCCCCCCCEEeccCCcCC----CCCCc
Q 038329 66 HRVTVLNISHLNLT-GSIP---SQLGNLSSLQALDLSFNRFNG-----TIPSSIFSLNSLQILDLSDNQLS----GSFPS 132 (187)
Q Consensus 66 ~~l~~l~l~~~~l~-~~~~---~~l~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~p~ 132 (187)
.+++.|++++|.+. +.++ ..+..++.|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45677777777765 2333 345566677777777777652 22335666677777777777764 35566
Q ss_pred cccCCCCCCEEECCCCccccc----CCC--------CCC------CCCCC----cCchhc-cCCccCceeeeecccCC
Q 038329 133 SIFNMSSLKVADFRKNRLSGE----FPA--------NIP------NKLPG----AMQKGI-GNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 133 ~l~~l~~L~~L~l~~n~l~g~----~p~--------~~~------n~~~~----~ip~~l-~~l~~L~~L~l~~N~l~ 187 (187)
.+..+++|++|++++|.+++. ++. .+. |.+++ .+|..+ .++++|++|++++|+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 666677777777777776543 111 111 55555 377766 56889999999998874
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.16 E-value=8.3e-12 Score=97.62 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=78.0
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCccccc-CCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGT-IPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.+++.++++++.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4566777777777655444 45677777888887777654 666677777778888877777766666777777777777
Q ss_pred CCCC-ccccc-CCCC------CC------C-CCCCc-CchhccCCc-cCceeeeecc
Q 038329 145 FRKN-RLSGE-FPAN------IP------N-KLPGA-MQKGIGNLT-KLEKLYLGHN 184 (187)
Q Consensus 145 l~~n-~l~g~-~p~~------~~------n-~~~~~-ip~~l~~l~-~L~~L~l~~N 184 (187)
+++| .+++. ++.. +. | .+++. ++..+..++ +|++|++++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 7777 45532 2211 10 3 44433 566667777 7888888777
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.13 E-value=4.4e-12 Score=99.22 Aligned_cols=121 Identities=20% Similarity=0.215 Sum_probs=93.3
Q ss_pred CCcEEEEEecCCCcccc-CCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCC-cCCC-CCCccccCCCCCC
Q 038329 65 SHRVTVLNISHLNLTGS-IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDN-QLSG-SFPSSIFNMSSLK 141 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~-~~p~~l~~l~~L~ 141 (187)
..+++.|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 45788899999888755 6777788889999999999888777778888889999999888 5664 2556677788888
Q ss_pred EEECCCC-ccccc--------CCCCCC------C--CCC-CcCchhccCCccCceeeeeccc
Q 038329 142 VADFRKN-RLSGE--------FPANIP------N--KLP-GAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 142 ~L~l~~n-~l~g~--------~p~~~~------n--~~~-~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
+|++++| .+++. .|..+. | .++ +.+|..+..+++|+.|++++|.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 8888888 77642 221222 3 344 5677788899999999999997
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.12 E-value=2e-12 Score=103.32 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=18.6
Q ss_pred CcEEEEEecCCCccc----cCCccccCCCCCCEEeCcCCccc
Q 038329 66 HRVTVLNISHLNLTG----SIPSQLGNLSSLQALDLSFNRFN 103 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~ 103 (187)
.+++.|++++|.+.+ .++..+..+++|++|++++|.++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 345555555555543 23334444555555555555543
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=1.2e-11 Score=98.13 Aligned_cols=121 Identities=26% Similarity=0.299 Sum_probs=84.9
Q ss_pred cEEEEEecCCCccccCCccccCC-----CCCCEEeCcCCcccccCCcc----cCCC-CCCCEEeccCCcCCCCCCccc--
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNL-----SSLQALDLSFNRFNGTIPSS----IFSL-NSLQILDLSDNQLSGSFPSSI-- 134 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~p~~l-- 134 (187)
+++.|++++|.+.+..+..+..+ +.|++|++++|.+++..+.. +..+ ++|+.|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 78899999999886666656554 88999999999988665553 3344 789999999999886554433
Q ss_pred --cC-CCCCCEEECCCCccccc-----------CCCCCC------CCCCCcCchhcc----CC-ccCceeeeecccCC
Q 038329 135 --FN-MSSLKVADFRKNRLSGE-----------FPANIP------NKLPGAMQKGIG----NL-TKLEKLYLGHNRLQ 187 (187)
Q Consensus 135 --~~-l~~L~~L~l~~n~l~g~-----------~p~~~~------n~~~~~ip~~l~----~l-~~L~~L~l~~N~l~ 187 (187)
.. .++|++|++++|.+++. .|..+. |.+++..+..+. .+ ++|+.|+|++|.++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 33 35899999999988732 222332 666665554333 34 58888888888763
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.04 E-value=6.1e-10 Score=87.94 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=78.7
Q ss_pred EEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCC-ccccCCCCCCE-EECCC
Q 038329 70 VLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFP-SSIFNMSSLKV-ADFRK 147 (187)
Q Consensus 70 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-L~l~~ 147 (187)
+++.++++++ .+|..+ .++++.|++++|.++...+..|..+++|++|++++|.+.+.+| ..|..++++++ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5778889988 778766 3689999999999995555678999999999999999876665 46788888765 56667
Q ss_pred CcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 148 NRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 148 n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
|+++.. .|..+..+++|++|++++|++
T Consensus 90 N~l~~l------------~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 90 NNLLYI------------NPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp TTCCEE------------CTTSBCCCTTCCEEEEEEECC
T ss_pred Cccccc------------Cchhhhhcccccccccccccc
Confidence 888732 234456777888888887765
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.03 E-value=5.6e-11 Score=94.26 Aligned_cols=115 Identities=24% Similarity=0.280 Sum_probs=88.2
Q ss_pred CCcEEEEEecCCCccccCC----ccccCCC-CCCEEeCcCCcccccCCcccCCC-----CCCCEEeccCCcCCCCCCcc-
Q 038329 65 SHRVTVLNISHLNLTGSIP----SQLGNLS-SLQALDLSFNRFNGTIPSSIFSL-----NSLQILDLSDNQLSGSFPSS- 133 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~- 133 (187)
..+++.|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4559999999999986555 6677888 89999999999987766666654 89999999999998766553
Q ss_pred ---ccCC-CCCCEEECCCCcccccCCCCCCCCCCCcCchhccC-CccCceeeeecccCC
Q 038329 134 ---IFNM-SSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGN-LTKLEKLYLGHNRLQ 187 (187)
Q Consensus 134 ---l~~l-~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~-l~~L~~L~l~~N~l~ 187 (187)
+..+ ++|++|++++|.+++..+. .+...+.. .++|++|+|++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~--------~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSS--------EFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHH--------HHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHH--------HHHHHHHhCCCceeEEEccCCcCC
Confidence 4444 8999999999999733221 11223444 369999999999874
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.01 E-value=4.2e-12 Score=103.29 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=80.3
Q ss_pred CcEEEEEecCCCcccc----CCccccCCCCCCEEeCcCCcccccCCcccC-----CCCCCCEEeccCCcCCCC----CCc
Q 038329 66 HRVTVLNISHLNLTGS----IPSQLGNLSSLQALDLSFNRFNGTIPSSIF-----SLNSLQILDLSDNQLSGS----FPS 132 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~p~ 132 (187)
.+++.|++++|.++.. ++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++. ++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 4566777777766642 445555667777777777777543322222 225777777777777643 345
Q ss_pred cccCCCCCCEEECCCCcccccCC-----------CCCC------CCCCC----cCchhccCCccCceeeeecccCC
Q 038329 133 SIFNMSSLKVADFRKNRLSGEFP-----------ANIP------NKLPG----AMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 133 ~l~~l~~L~~L~l~~n~l~g~~p-----------~~~~------n~~~~----~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
.+..+++|++|++++|.+++..+ ..+. |.+++ .+|..+..+++|++|++++|+++
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 56667888888888888764321 1221 66665 77888888999999999999874
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.88 E-value=4.8e-11 Score=97.05 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=74.1
Q ss_pred cEEEEEecCCCcccc----CCccccCCCCCCEEeCcCCcccccC-----CcccCCCCCCCEEeccCCcCCCC----CCcc
Q 038329 67 RVTVLNISHLNLTGS----IPSQLGNLSSLQALDLSFNRFNGTI-----PSSIFSLNSLQILDLSDNQLSGS----FPSS 133 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~p~~ 133 (187)
+++.|++++|.+++. ++..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 566777777766642 3455566677777777777765432 22223467777788877777642 4555
Q ss_pred ccCCCCCCEEECCCCcccccCC-----------CCCC------CCCCCc----CchhccCCccCceeeeecccC
Q 038329 134 IFNMSSLKVADFRKNRLSGEFP-----------ANIP------NKLPGA----MQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 134 l~~l~~L~~L~l~~n~l~g~~p-----------~~~~------n~~~~~----ip~~l~~l~~L~~L~l~~N~l 186 (187)
+..+++|++|++++|.+++..+ ..+. |.+++. ++..+..+++|+.|++++|.+
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 6667778888888877753211 1121 444443 455566677777888777765
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=2.6e-10 Score=91.11 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=43.6
Q ss_pred CCCCEEeCcCCccccc----CCcccCCCCCCCEEeccCCcCCCC----CCccccCCCCCCEEECCCCcccccCCCCCCCC
Q 038329 90 SSLQALDLSFNRFNGT----IPSSIFSLNSLQILDLSDNQLSGS----FPSSIFNMSSLKVADFRKNRLSGEFPANIPNK 161 (187)
Q Consensus 90 ~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~ 161 (187)
+.|+.|++++|.++.. ++..+...++|++|++++|.++.. ++..+...++|++|++++|.++..-.
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~------ 228 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA------ 228 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH------
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH------
Confidence 4455555555554321 222223444555555555554421 12233344455555555555541100
Q ss_pred CCCcCchhccCCccCceeeeecccCC
Q 038329 162 LPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 162 ~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
..+...+...++|++|+|++|.|+
T Consensus 229 --~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 --LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp --HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred --HHHHHHHHhCCCCCEEeccCCCCC
Confidence 123344556678888888888764
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=5.4e-10 Score=89.21 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=82.5
Q ss_pred CcEEEEEecCCCccccCCccc-cCCCCCCEEeCcCCcccccCCccc-----CCCCCCCEEeccCCcCCC----CCCcccc
Q 038329 66 HRVTVLNISHLNLTGSIPSQL-GNLSSLQALDLSFNRFNGTIPSSI-----FSLNSLQILDLSDNQLSG----SFPSSIF 135 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~----~~p~~l~ 135 (187)
.+++.|++++|.+.......+ ..+++|+.|++++|.++......+ .....|+.|++++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 579999999998874332222 235678999999999875433333 346789999999999874 2334457
Q ss_pred CCCCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 136 NMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 136 ~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
.+++|++|++++|.+++.-. ..++..+...++|+.|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~--------~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGL--------ELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHH--------HHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCCcCEEeCCCCCCCcHHH--------HHHHHHHhcCCCcCeEECCCCCCC
Confidence 78899999999999873210 134556777889999999999874
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.59 E-value=1.6e-08 Score=77.07 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=60.6
Q ss_pred CCCCCCEEeCcCCcccc--cCCcccCCCCCCCEEeccCCcCCCCCCccccCCC--CCCEEECCCCcccccCCCCCCCCCC
Q 038329 88 NLSSLQALDLSFNRFNG--TIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMS--SLKVADFRKNRLSGEFPANIPNKLP 163 (187)
Q Consensus 88 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~g~~p~~~~n~~~ 163 (187)
.++.|+.|++++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+.+|..-
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~----- 240 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS----- 240 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH-----
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch-----
Confidence 46789999999999886 3455566788999999999998854 3344444 88999999999886554210
Q ss_pred CcCchhccCCccCceee
Q 038329 164 GAMQKGIGNLTKLEKLY 180 (187)
Q Consensus 164 ~~ip~~l~~l~~L~~L~ 180 (187)
.-....+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 01123456778888876
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=1.5e-07 Score=73.43 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=81.7
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCC-EEeccCCcCCCCCCccccCCCCCCEEE
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQ-ILDLSDNQLSGSFPSSIFNMSSLKVAD 144 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~L~ 144 (187)
.+++.+++++|++....+..|..+.+|+.+++.+| +....+..|..+.+|+ .+.+++ .++...+..|..+++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 57889999998888555567889999999999988 6655667788999999 999988 67656678899999999999
Q ss_pred CCCCcccccCCCCCCCCCCCcCchhccCCccCceeee
Q 038329 145 FRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYL 181 (187)
Q Consensus 145 l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l 181 (187)
++.|.++ .++. ..|..+++|+.++.
T Consensus 304 l~~n~i~-~I~~-----------~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKIT-TLGD-----------ELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCC-EECT-----------TTTCTTCCCCEEEC
T ss_pred eCCCccC-ccch-----------hhhcCCcchhhhcc
Confidence 9999887 3322 24678888988863
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=2.4e-09 Score=77.24 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=85.2
Q ss_pred CCcEEEEEecCC-Ccccc----CCccccCCCCCCEEeCcCCccccc----CCcccCCCCCCCEEeccCCcCCCC----CC
Q 038329 65 SHRVTVLNISHL-NLTGS----IPSQLGNLSSLQALDLSFNRFNGT----IPSSIFSLNSLQILDLSDNQLSGS----FP 131 (187)
Q Consensus 65 ~~~l~~l~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p 131 (187)
...++.|++++| .+... +...+...+.|++|++++|.+... +...+....+|++|++++|.++.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 467899999999 88632 344567778999999999999753 334455568899999999998843 34
Q ss_pred ccccCCCCCCEEEC--CCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 132 SSIFNMSSLKVADF--RKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 132 ~~l~~l~~L~~L~l--~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
..+...++|++|++ ++|.++..-. ..+...+...++|+.|+|++|.+
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~--------~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVE--------MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHH--------HHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHH--------HHHHHHHHhCCCcCEEeccCCCC
Confidence 56777789999999 8899873211 12344566778999999999975
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.51 E-value=7.7e-09 Score=86.54 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=54.7
Q ss_pred ccCCCCCCEEeCcCCc--ccccCCcccC-CCCCCCEEeccCCcCCC-CCCccccCCCCCCEEECCCCcccccCCCCCCCC
Q 038329 86 LGNLSSLQALDLSFNR--FNGTIPSSIF-SLNSLQILDLSDNQLSG-SFPSSIFNMSSLKVADFRKNRLSGEFPANIPNK 161 (187)
Q Consensus 86 l~~l~~L~~L~l~~n~--~~~~~~~~l~-~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~ 161 (187)
+..+++|+.|+++.+. +++.....+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++.
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------- 503 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-------- 503 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH--------
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH--------
Confidence 3345566666665322 3333332222 35667777777777664 2334456667777777777776522
Q ss_pred CCCcCchhccCCccCceeeeecccCC
Q 038329 162 LPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 162 ~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
.++..+..+++|++|++++|+++
T Consensus 504 ---~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 504 ---AIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp ---HHHHHHHHCSSCCEEEEESCBCC
T ss_pred ---HHHHHHHhcCccCeeECcCCcCC
Confidence 23444567888999999998864
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.49 E-value=2.9e-08 Score=83.05 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=18.7
Q ss_pred CCcCchhccCCccCceeeeecccC
Q 038329 163 PGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 163 ~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
.+.+|..+..+++|++|++++|.+
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCC
T ss_pred hhHHHHHHhhcCCCcEEecCCCcC
Confidence 355677777888899999988865
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=4.1e-07 Score=69.25 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=62.8
Q ss_pred CCcEEEEEecCCCccc--cCCccccCCCCCCEEeCcCCcccccCCcccCCCC--CCCEEeccCCcCCCCCCc-------c
Q 038329 65 SHRVTVLNISHLNLTG--SIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLN--SLQILDLSDNQLSGSFPS-------S 133 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~p~-------~ 133 (187)
..+++.|++++|.+.+ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4579999999999996 4556677899999999999999854 2233344 999999999999976662 3
Q ss_pred ccCCCCCCEEE
Q 038329 134 IFNMSSLKVAD 144 (187)
Q Consensus 134 l~~l~~L~~L~ 144 (187)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67789999886
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.26 E-value=5.3e-08 Score=81.40 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=56.1
Q ss_pred ccCCCCCCEEeCcCCcccccCCcccCC-CCCCCEEeccCCcCCCCCCccc-cCCCCCCEEECCCCcccccCCCCCCCCCC
Q 038329 86 LGNLSSLQALDLSFNRFNGTIPSSIFS-LNSLQILDLSDNQLSGSFPSSI-FNMSSLKVADFRKNRLSGEFPANIPNKLP 163 (187)
Q Consensus 86 l~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~g~~p~~~~n~~~ 163 (187)
+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~---------- 496 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK---------- 496 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH----------
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH----------
Confidence 34556677777755 444443333433 6777888888777764433333 5577788888888877522
Q ss_pred CcCchhccCCccCceeeeecccC
Q 038329 164 GAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 164 ~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
.+...+..+++|+.|++++|++
T Consensus 497 -~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 497 -ALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -HHHHTGGGGGGSSEEEEESSCC
T ss_pred -HHHHHHHhCCCCCEEeeeCCCC
Confidence 1122345688999999999875
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=4.2e-06 Score=65.20 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=70.8
Q ss_pred CCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCC-EEECCCCcccccCCCCCCCCCCCcCc
Q 038329 89 LSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLK-VADFRKNRLSGEFPANIPNKLPGAMQ 167 (187)
Q Consensus 89 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~l~~n~l~g~~p~~~~n~~~~~ip 167 (187)
++.|+.+++++|.++...+..|..+.+|+.+++++| +...-+..|..+++|+ .+++.. .++ .++ +
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~-----------~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIE-----------F 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EEC-----------T
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEc-----------h
Confidence 789999999999998666678999999999999998 7756677899999999 999988 565 222 3
Q ss_pred hhccCCccCceeeeecccCC
Q 038329 168 KGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 168 ~~l~~l~~L~~L~l~~N~l~ 187 (187)
..|..+++|+.+++++|.++
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCC
T ss_pred hhhhCCccCCEEEeCCCccC
Confidence 45788999999999888763
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=9.7e-08 Score=68.74 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=73.3
Q ss_pred CCccccCCCCCCEEeCcCC-ccccc----CCcccCCCCCCCEEeccCCcCCCC----CCccccCCCCCCEEECCCCcccc
Q 038329 82 IPSQLGNLSSLQALDLSFN-RFNGT----IPSSIFSLNSLQILDLSDNQLSGS----FPSSIFNMSSLKVADFRKNRLSG 152 (187)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~g 152 (187)
+...+...+.|+.|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.++.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4445677899999999999 88643 345566789999999999998742 23345556889999999999973
Q ss_pred cCCCCCCCCCCCcCchhccCCccCceeee--ecccCC
Q 038329 153 EFPANIPNKLPGAMQKGIGNLTKLEKLYL--GHNRLQ 187 (187)
Q Consensus 153 ~~p~~~~n~~~~~ip~~l~~l~~L~~L~l--~~N~l~ 187 (187)
.- ...+...+...++|++|+| ++|.|+
T Consensus 108 ~g--------~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 108 SG--------ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HH--------HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HH--------HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 21 1124456777889999999 889874
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.13 E-value=3.3e-07 Score=76.54 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=56.9
Q ss_pred CcEEEEEecCCCccccCCcccc-CCCCCCEEeCcCC-ccccc-CCcccCCCCCCCEEeccCCcCCCCCCccc----cCCC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLG-NLSSLQALDLSFN-RFNGT-IPSSIFSLNSLQILDLSDNQLSGSFPSSI----FNMS 138 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~l----~~l~ 138 (187)
.+++.|+++++.+.+..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4678888888887765555554 5778888888887 44432 33333467888888888888765443333 3566
Q ss_pred CCCEEECCCCc
Q 038329 139 SLKVADFRKNR 149 (187)
Q Consensus 139 ~L~~L~l~~n~ 149 (187)
+|++|++++|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 88888888776
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=8.2e-07 Score=70.54 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=14.5
Q ss_pred chhccCCccCceeeeecccCC
Q 038329 167 QKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 167 p~~l~~l~~L~~L~l~~N~l~ 187 (187)
+..+..+++|+.|+|++|.++
T Consensus 300 ~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 300 LDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HTTHHHHTTCSEEECCSBBCC
T ss_pred HhhcccCCcceEEECCCCcCC
Confidence 334456778888888888764
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=1.3e-06 Score=62.24 Aligned_cols=84 Identities=7% Similarity=0.071 Sum_probs=63.6
Q ss_pred CcEEEEEecCCCccccCCccccCCCCCCEEeCcCCc-ccccCCcccCCC----CCCCEEeccCCc-CCCCCCccccCCCC
Q 038329 66 HRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNR-FNGTIPSSIFSL----NSLQILDLSDNQ-LSGSFPSSIFNMSS 139 (187)
Q Consensus 66 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~p~~l~~l~~ 139 (187)
-+++.|+++++.++..--..+..+++|+.|+++++. +++.--..+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999876555567889999999999985 665544445554 379999999975 66433345677899
Q ss_pred CCEEECCCCc
Q 038329 140 LKVADFRKNR 149 (187)
Q Consensus 140 L~~L~l~~n~ 149 (187)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999875
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.83 E-value=0.00015 Score=58.16 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=69.0
Q ss_pred cEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 67 RVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 67 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
+++.+.+.. .+...-...|..+.+|+.++++.|.+.......|. ...|+.+.+..+ +...-...|..+++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 456666664 44433345677888888888888887733333443 578888888754 554555677788888888887
Q ss_pred CCcccccCCCC-CC----------CCCCCcCchhccCCccCceeeeeccc
Q 038329 147 KNRLSGEFPAN-IP----------NKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 147 ~n~l~g~~p~~-~~----------n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
.| ++ .++.. |. +.+...-...|..+++|+.+++.+|.
T Consensus 235 ~~-l~-~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TT-CC-EECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred CC-cc-CccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 64 32 22221 11 22222223456667777777776654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=5.5e-06 Score=59.08 Aligned_cols=92 Identities=11% Similarity=0.147 Sum_probs=66.7
Q ss_pred CCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCc-CCCCCCccccCC----CCCCEEECCCCc-ccccCC
Q 038329 82 IPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQ-LSGSFPSSIFNM----SSLKVADFRKNR-LSGEFP 155 (187)
Q Consensus 82 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l----~~L~~L~l~~n~-l~g~~p 155 (187)
+|.....-..|+.|+++++.++..--..+..+++|+.|+++++. ++...-..+..+ ++|++|+++++. +|..
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-- 130 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-- 130 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH--
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH--
Confidence 44433223469999999999987766778899999999999995 664322345554 379999999975 7622
Q ss_pred CCCCCCCCCcCchhccCCccCceeeeeccc
Q 038329 156 ANIPNKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 156 ~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
.+ ..+..+++|+.|++++..
T Consensus 131 ---------Gl-~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 ---------GI-IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp ---------HH-HHGGGCTTCCEEEEESCT
T ss_pred ---------HH-HHHhcCCCCCEEECCCCC
Confidence 11 246778999999999863
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.63 E-value=0.00024 Score=57.01 Aligned_cols=62 Identities=8% Similarity=-0.016 Sum_probs=31.1
Q ss_pred ccccCCCCCCEEeCcCCccc-----ccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 84 SQLGNLSSLQALDLSFNRFN-----GTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 84 ~~l~~l~~L~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
..|..+++|+.+.+.+|.+. ...+..|..+.+|+.+.+.. .+...-...|..+++|+.+.+.
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 34555556666665555443 12334455555555555552 2443333455555555555553
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.57 E-value=5.4e-05 Score=60.06 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=61.0
Q ss_pred CCcEEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccC--CCCCCCEEeccC--CcCCCC-----CCccc-
Q 038329 65 SHRVTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIF--SLNSLQILDLSD--NQLSGS-----FPSSI- 134 (187)
Q Consensus 65 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~p~~l- 134 (187)
.++++.|+++++.-. .++. + .+++|+.|++..+.+.......+. .+++|+.|+|+. +...+. +...+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 356777777665211 2332 3 266777777777766543322332 567777777643 111111 01112
Q ss_pred -cCCCCCCEEECCCCcccccCCCCCCCCCCCcCchhccCCccCceeeeecccCC
Q 038329 135 -FNMSSLKVADFRKNRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRLQ 187 (187)
Q Consensus 135 -~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l~ 187 (187)
..+++|++|++.+|.+++..+..+ .....+++|+.|+|+.|.++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~l---------a~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMF---------LESDILPQLETMDISAGVLT 292 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHH---------HHCSSGGGCSEEECCSSCCB
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHH---------HhCccCCCCCEEECCCCCCC
Confidence 246778888888777763221111 01135789999999998763
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.00079 Score=45.35 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=31.3
Q ss_pred EEEecCCCcc-ccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcC
Q 038329 70 VLNISHLNLT-GSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQL 126 (187)
Q Consensus 70 ~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 126 (187)
.++.++++++ ..+|..+. ..|+.|+|++|.++...+..|..+.+|+.|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4566666664 24443321 3466677777776644444455666666666666644
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.95 E-value=5.2e-05 Score=54.96 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=74.1
Q ss_pred CCcEEEEEecCC-Cccc----cCCccccCCCCCCEEeCcCCcccccC----CcccCCCCCCCEEeccCCcCCCC----CC
Q 038329 65 SHRVTVLNISHL-NLTG----SIPSQLGNLSSLQALDLSFNRFNGTI----PSSIFSLNSLQILDLSDNQLSGS----FP 131 (187)
Q Consensus 65 ~~~l~~l~l~~~-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~----~p 131 (187)
...++.|+++++ .+.. .+...+..-+.|+.|++++|.+...- ...+..-..|+.|+|++|.|+.. +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456888999885 6652 23445666778999999999987543 23344568899999999998742 12
Q ss_pred ccccCCCCCCEEECCCCc---ccccCCCCCCCCCCCcCchhccCCccCceeeeeccc
Q 038329 132 SSIFNMSSLKVADFRKNR---LSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNR 185 (187)
Q Consensus 132 ~~l~~l~~L~~L~l~~n~---l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~ 185 (187)
..+..-+.|++|+|++|. +... ....+-..+..-+.|+.|+++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~--------g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQ--------VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHH--------HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHH--------HHHHHHHHHHhCCCcCeEeccCCC
Confidence 344555679999998653 3210 001233456667788888887664
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.79 E-value=0.0032 Score=42.30 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=41.8
Q ss_pred CEEeCcCCccc-ccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCccc
Q 038329 93 QALDLSFNRFN-GTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLS 151 (187)
Q Consensus 93 ~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 151 (187)
..++.+++.++ ..+|..+ ..+|+.|+|++|.|+..-+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 2455433 346888899999888655566788888899999888774
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.58 E-value=0.019 Score=45.47 Aligned_cols=84 Identities=15% Similarity=0.214 Sum_probs=42.3
Q ss_pred ccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCCc
Q 038329 86 LGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPGA 165 (187)
Q Consensus 86 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~~ 165 (187)
|..+..|+.+.+.. .+.......|..+.+|+.+.+..+ ++..-..+|..+++|+.+.+..+ ++ . .
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~-----------I 348 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-K-----------I 348 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-B-----------C
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-E-----------E
Confidence 44445555555532 233223344555566666666543 33233345566666666655332 22 1 1
Q ss_pred CchhccCCccCceeeeecc
Q 038329 166 MQKGIGNLTKLEKLYLGHN 184 (187)
Q Consensus 166 ip~~l~~l~~L~~L~l~~N 184 (187)
-...|.++++|+.+++.+|
T Consensus 349 ~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CGGGGTTCTTCCEEEESSC
T ss_pred hHhHhhCCCCCCEEEECCc
Confidence 1235667777777777665
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.50 E-value=0.00044 Score=50.09 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=65.9
Q ss_pred ccccCCCCCCEEeCcCC-ccccc----CCcccCCCCCCCEEeccCCcCCCCC----CccccCCCCCCEEECCCCcccccC
Q 038329 84 SQLGNLSSLQALDLSFN-RFNGT----IPSSIFSLNSLQILDLSDNQLSGSF----PSSIFNMSSLKVADFRKNRLSGEF 154 (187)
Q Consensus 84 ~~l~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~l~~n~l~g~~ 154 (187)
..+..-+.|+.|++++| .+... +...+..-..|+.|+|++|.+.... ...+..-+.|++|+|+.|.++..-
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33455678999999986 77532 4456667789999999999998432 233444578999999999997321
Q ss_pred CCCCCCCCCCcCchhccCCccCceeeeecc
Q 038329 155 PANIPNKLPGAMQKGIGNLTKLEKLYLGHN 184 (187)
Q Consensus 155 p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N 184 (187)
- ..+-..+..-+.|+.|+|++|
T Consensus 115 a--------~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 L--------ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp H--------HHHHHHTTTTCCCSEEECCCC
T ss_pred H--------HHHHHHHhhCCceeEEECCCC
Confidence 1 123345666778999999865
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.45 E-value=0.011 Score=46.93 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=63.8
Q ss_pred EEEEEecCCCccccCCccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 68 VTVLNISHLNLTGSIPSQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 68 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
++.+.+. +.+...-...|..+.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++..-..+|.++++|+.+++.+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 4444443 2233223346888999999999865 55345667889999999999765 5545557899999999999998
Q ss_pred CcccccCCCCCCCCCCCcCchhccCCccCceeeeecccC
Q 038329 148 NRLSGEFPANIPNKLPGAMQKGIGNLTKLEKLYLGHNRL 186 (187)
Q Consensus 148 n~l~g~~p~~~~n~~~~~ip~~l~~l~~L~~L~l~~N~l 186 (187)
+.... ..+..+.+|+.+.+..|.+
T Consensus 367 ~~~~~---------------~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 367 SRSQW---------------NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CHHHH---------------HTCBCCCCC----------
T ss_pred ceeeh---------------hhhhccCCCCEEEeCCCCE
Confidence 76541 2345677888888776643
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.28 E-value=0.014 Score=46.32 Aligned_cols=85 Identities=20% Similarity=0.099 Sum_probs=55.7
Q ss_pred cccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCcccccCCCCCCCCCCC
Q 038329 85 QLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLSGEFPANIPNKLPG 164 (187)
Q Consensus 85 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~~~n~~~~ 164 (187)
.|..+..|+.+.+..+ +...-...|..+.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++ .++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~--------- 358 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIG--------- 358 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EEC---------
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Eeh---------
Confidence 4667778888887654 44344556777888888888654 55344567888888888877655 43 222
Q ss_pred cCchhccCCccCceeeeecc
Q 038329 165 AMQKGIGNLTKLEKLYLGHN 184 (187)
Q Consensus 165 ~ip~~l~~l~~L~~L~l~~N 184 (187)
...|..+++|+.+++..+
T Consensus 359 --~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 --ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp --TTTBTTCTTCCEEEEEGG
T ss_pred --HHHhhCCCCCCEEEECCC
Confidence 124667777777777654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.26 E-value=0.024 Score=44.53 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=36.3
Q ss_pred cccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 85 QLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 85 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
.|..+..|+.+.+..+ +.......|..+.+|+.+.+.++.++..-...|..+.+|+.+.+..
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 3455556666665433 3323334556667777777766666544445667777777777653
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.66 E-value=0.044 Score=43.38 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=30.4
Q ss_pred cccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECC
Q 038329 85 QLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFR 146 (187)
Q Consensus 85 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 146 (187)
.|..+.+|+.+++..+ +...-...|..+.+|+.+.+..+ ++..-..+|..+++|+.+++.
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 3555555666655432 33223344555556666655544 332333455555566655554
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.64 E-value=0.21 Score=39.03 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=45.7
Q ss_pred ccccCCCCCCEEeCcCCcccccCCcccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCCCccc
Q 038329 84 SQLGNLSSLQALDLSFNRFNGTIPSSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRKNRLS 151 (187)
Q Consensus 84 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 151 (187)
..+..+..|+.+.+..+ ++..-...|..+..|+.+.+..+ +.......|..+++|+.+.+..+.++
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc
Confidence 34566677777777655 43334456677888888888654 44344467888899999999887776
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.03 E-value=24 Score=21.88 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=19.3
Q ss_pred cccCCCCCCCEEeccCCcCCCCCCccccCCCCCCEEECCC
Q 038329 108 SSIFSLNSLQILDLSDNQLSGSFPSSIFNMSSLKVADFRK 147 (187)
Q Consensus 108 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 147 (187)
..|..+.+|+.+.+..+ ++..-..+|..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34445555555555543 2223334555556666555544
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=22.35 E-value=21 Score=15.31 Aligned_cols=9 Identities=33% Similarity=1.247 Sum_probs=6.7
Q ss_pred CCCCceeeE
Q 038329 52 SVCNWMGVT 60 (187)
Q Consensus 52 ~~c~w~g~~ 60 (187)
..|+|.|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 468998864
Done!