BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038330
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 121/211 (57%), Gaps = 1/211 (0%)
Query: 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM 60
S N IEDC I G D +++KSGWDEYGIAYG PT + IRR+ S + +A GSEM
Sbjct: 256 SCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEM 315
Query: 61 SGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHP 120
SGGI +V+ E I +S +GI +T GRGGY+K I + + + AF GN GSH
Sbjct: 316 SGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHA 375
Query: 121 DDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISL-LINPGSYNSW 179
D+ +DP A P I I ++D++ N+++A GI PF IC+SN+++ L W
Sbjct: 376 DNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPW 435
Query: 180 ECSNIHGSSESVFPEPCPELENSSSNSSSTC 210
C+++ G S V P PC L + +S C
Sbjct: 436 TCTDVEGISSGVTPTPCSTLPDQGPEKTSLC 466
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana
GN=At3g15720 PE=1 SV=1
Length = 456
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 28/227 (12%)
Query: 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM 60
+S NV I+DCIIA G D I++ SG T+++HI + G ++ GS
Sbjct: 195 ASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGI--DCGPGHGISIGSLG 241
Query: 61 SGG----ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNIN--VAFGACG 114
G + NV V+ + ++NG +T +G GY + I + L N+ +
Sbjct: 242 KDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFY 301
Query: 115 NCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG-NFTGIQEAPFANICLSNISLLI-- 171
N G + + + ++ F + IGT+ + G +F + P I L ++ +
Sbjct: 302 NGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETAS 361
Query: 172 -NPGSYNSWECSNIHGSSESVFPE-PCPELENSSSNSS----STCFS 212
G +C N+ G+S P C EL +S+ TC S
Sbjct: 362 SGSGQVAQGQCLNVRGASTIAVPGLECLELSTDMFSSAQLLEQTCMS 408
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1
Length = 312
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 1 SSDNVCIEDCIIAMGHDAISLKSGW-----DEYGIAYGRPTTDVHIRRVLLQSSSGSSVA 55
S NV I ++G D I++K+G ++ +A R T +R L+Q G V
Sbjct: 79 SCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGIT---VRHCLMQPGHGGLV- 134
Query: 56 FGSEMSGGISNVQVEKIHLYDSLNGIEFRT-TKGRGGYIKQIVISDAELYNINVAFGACG 114
GSEMSGG+ +V VE + + G+ +T + GG + I + L + A A
Sbjct: 135 IGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANA 194
Query: 115 --NCGSHPDDDF----DP----DALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFAN 161
+C + DD+ +P D P +D IT +D+ N+ AG F G+ + P A
Sbjct: 195 HYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDVEIRNLAHAAGVFLGLPDVPSAT 252
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 42/213 (19%)
Query: 7 IEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSEMSGG-I 64
IE C+I G D I++ +G ++++ I+ ++ G S+ + G + S +
Sbjct: 246 IEKCVIGTGDDCIAIGTG-----------SSNITIKDLICGPGHGISIGSLGRDNSRAEV 294
Query: 65 SNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYN------INVAF----GACG 114
S+V V + D+ NG+ +T +G G I + E+ N IN + AC
Sbjct: 295 SHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQ 354
Query: 115 NCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG-NFTGIQEAPFANICLSNISLLINP 173
N S I +T+K+I GT+ T A P I LSN+SL +
Sbjct: 355 NQRSAVQ----------IQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTS 404
Query: 174 GSYNSWECSNIHG--------SSESVFPEPCPE 198
G S N G + +++ P P P+
Sbjct: 405 GKPASCVDKNARGFYSGRLIPTCKNLRPGPSPK 437
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2
Length = 439
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGS--- 58
+ N+ I+D I+ G D IS+ SG + ++R + G ++ GS
Sbjct: 251 TQNILIQDSIVRTGDDCISIVSGSE-------------NVRATGITCGPGHGISIGSLGE 297
Query: 59 -EMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNIN----VAFGAC 113
+SNV V K L + NG+ +T +G G K I+ D + N+ + C
Sbjct: 298 DNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYC 357
Query: 114 GNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLL 170
+ P+ + + + +K+I GT+ IA F + P I + N+ L+
Sbjct: 358 DRVEACPEQ----KSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLV 411
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1
Length = 457
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 20/200 (10%)
Query: 7 IEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGG--- 63
I D II G D IS+ SG +++ + G ++ GS SG
Sbjct: 261 ISDTIIGTGDDCISIVSG-------------SQNVQATNITCGPGHGISIGSLGSGNSEA 307
Query: 64 -ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDD 122
+SNV V + + + NG+ +T +G G I + E+ ++ N +
Sbjct: 308 YVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEP 367
Query: 123 DFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLLINPGSYNSWEC 181
+ + + +++I GT+ T +A F P I + NI+L+ G + C
Sbjct: 368 CIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESGKPSEATC 427
Query: 182 SNIH-GSSESVFPEPCPELE 200
N+H ++E V P C LE
Sbjct: 428 KNVHFNNAEHVTPH-CTSLE 446
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 49/219 (22%)
Query: 7 IEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISN 66
IE C I G D +++ +G ++++ I+ L G ++ GS + G S
Sbjct: 247 IEKCTIGTGDDCVAVGTG-----------SSNITIKD--LTCGPGHGMSIGS-LGKGNSR 292
Query: 67 VQVEKIHL-----YDSLNGIEFRTTKGRGGYIKQIVISDAELYN------INVAF----G 111
+V +HL D+ NG+ +T +G G I + E+ N IN +
Sbjct: 293 SEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEMINAENPILINQFYCTSAA 352
Query: 112 ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG-NFTGIQEAPFANICLSNISLL 170
AC N S I +TFK+I GT+ T A P +NI LSN+ L
Sbjct: 353 ACKNQRS----------AVKIQDVTFKNIHGTSATTAAIQLMCSDSVPCSNIKLSNVFLK 402
Query: 171 INPGSY--------NSWECSNIHGSSESVFPEPCP-ELE 200
+ G N + + ++ S +S+ P P ELE
Sbjct: 403 LTSGKVATCVNKNANGYYTNPLNPSCKSLHPGRTPKELE 441
>sp|A2QWT2|RHGD_ASPNC Putative rhamnogalacturonase D OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rhgD PE=3 SV=1
Length = 443
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 46/205 (22%)
Query: 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSE 59
S N I D + G + +++KS P+ +V + V S G ++ + G++
Sbjct: 200 SGANYWIHDVEVTNGDECVTVKS-----------PSANVRVENVFCNHSGGCAMGSLGTD 248
Query: 60 MSGGISNVQVEKIHLYDSLNGIEFRTTKGRG-----GYIKQIVISDAELYNINVAFGACG 114
+ ISN++ E I+ Y+S ++ G G + I S+A + +++ +G
Sbjct: 249 TN--ISNIEFENIYTYNSTQMYMIKSNGGNGTVTNCSFKNFIGYSNAYMLDLDTYWG--- 303
Query: 115 NCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPF----------ANICL 164
D+ D D + + I F++ GT+ GIQ +P NI L
Sbjct: 304 -------DESDGDGI-KYENIGFENWKGTS------SNGIQRSPIRILCPDANPCTNITL 349
Query: 165 SNISLLINPGSYNSWECSNIHGSSE 189
+ + L + G Y ECS+ +G E
Sbjct: 350 TAVELWTDTGDYVKQECSSAYGEGE 374
>sp|Q2UQ40|PGXC_ASPOR Probable exopolygalacturonase C OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=pgxC PE=3 SV=1
Length = 437
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 4 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGG 63
N+ I D I+ G DAI++ S D + I + R T + + S + AF +
Sbjct: 217 NIRISDSIMYNGDDAIAVGS--DSHNIVFERNTIGYQSHGMSIGSLGKDASAFAN----- 269
Query: 64 ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNI 106
I+N++ E + + D+L F++ G G +K + + +YN+
Sbjct: 270 ITNLRFEDVTVIDALYAARFKSWTGGQGLVKNVTWKNIRVYNV 312
>sp|B8MZZ6|PGXC_ASPFN Probable exopolygalacturonase C OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=pgxC PE=3 SV=1
Length = 437
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 4 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGG 63
N+ I D I+ G DAI++ S D + I + R T + + S + AF +
Sbjct: 217 NIRISDSIMYNGDDAIAVGS--DSHNIVFERNTIGYQSHGMSIGSLGKDASAFAN----- 269
Query: 64 ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNI 106
I+N++ E + + D+L F++ G G +K + + +YN+
Sbjct: 270 ITNLRFEDVTVIDALYAARFKSWTGGQGLVKNVTWKNIRVYNV 312
>sp|B8NGP8|RHGC_ASPFN Probable rhamnogalacturonase C OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=rhgC PE=3 SV=2
Length = 447
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 38/195 (19%)
Query: 4 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG- 62
NV I D + G + +++KS P +D I + S G+ A GS +G
Sbjct: 205 NVWIHDIEVTNGDECVTVKS-----------PASDFLIENIYCNLSGGT--AIGSLGTGT 251
Query: 63 GISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYN------INVAFGA-CGN 115
ISN+ +++ + + +T G G +K IV + ++ +N A+G G+
Sbjct: 252 NISNIHYRNLYM-NQADACYLKTHNGDG-IVKNIVWENVIVHGGPYPLAVNEAWGKDVGS 309
Query: 116 CGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ---EAPFANICLSNISLLIN 172
G + +TF++ G N + I+ + P +I L N++L
Sbjct: 310 TGVQ------------VQNLTFRNWYGENTANSRPAIRIECDEDVPCYDITLDNVNLWTE 357
Query: 173 PGSYNSWECSNIHGS 187
G Y W C+N +GS
Sbjct: 358 DGDYVEWSCANAYGS 372
>sp|Q2UFD2|RHGC_ASPOR Probable rhamnogalacturonase C OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=rhgC PE=3 SV=1
Length = 447
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 38/195 (19%)
Query: 4 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG- 62
NV + D + G + +++KS P +D I + S G+ A GS +G
Sbjct: 205 NVWVHDIEVTNGDECVTVKS-----------PASDFLIENIYCNLSGGT--AIGSLGTGT 251
Query: 63 GISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYN------INVAFGA-CGN 115
ISN+ +++ + + +T G G +K IV + ++ +N A+G G+
Sbjct: 252 NISNIHYRNLYM-NQADACYLKTHNGDG-IVKNIVWENVIVHRGPYPLAVNEAWGKDVGS 309
Query: 116 CGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ---EAPFANICLSNISLLIN 172
G + +TF++ G N + I+ + P +I L N++L
Sbjct: 310 TGVQ------------VQNLTFRNWYGENTANSRPAIRIECDEDVPCYDITLDNVNLWTE 357
Query: 173 PGSYNSWECSNIHGS 187
G Y W C+N +GS
Sbjct: 358 DGDYVEWSCANAYGS 372
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
Length = 467
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 18/200 (9%)
Query: 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS 61
+ N+ I C+I G D IS+ +G + +R + G ++ GS
Sbjct: 269 TQNIHISSCVIGTGDDCISIVNGSRK-------------VRVNDITCGPGHGISIGSLGY 315
Query: 62 GG----ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCG 117
G +S+V V L + NG+ +T +G G I + E++N+ N
Sbjct: 316 GNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIIIDQNYC 375
Query: 118 SHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLLINPGSY 176
+ + + + +++I GT + +A F + P I L ++ L I G+
Sbjct: 376 DQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAA 435
Query: 177 NSWECSNIHGSSESVFPEPC 196
C+N+ S V C
Sbjct: 436 AKALCNNVELSETGVVSPHC 455
>sp|B0XYC4|PGXC_ASPFC Probable exopolygalacturonase C OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=pgxC PE=3 SV=1
Length = 440
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 4 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS-- 61
N+ I D ++ G DAI++ + + I + R T + QS S + G + +
Sbjct: 219 NISITDSVMFNGDDAIAVNT--PSHNIVFARNT-------IGYQSHGMSIGSLGKDPTDF 269
Query: 62 GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNIN----VAFGACGNCG 117
I+N++ E + + D+L F++ G G +K +V + +N+ V
Sbjct: 270 ANITNLRFEDVTVIDALYAARFKSWSGGRGLVKNVVWKNIRTFNVTFPIFVTQSYSDQSA 329
Query: 118 SHPDDDFDPDALPAIDQITFKDIIGT-NITIAGNFTGIQEAPFANICLSNI 167
S P DP + ++ T+ D GT N G+ + + + + N+ L N+
Sbjct: 330 SRP-GTIDPFSSVMMEDFTWSDFSGTINTYHPGDGSCVTDPCWYNVGLPNL 379
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1
Length = 462
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 64 ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDD 123
+S V V+ +L+D+ NG+ +T +G G K I + ++N+ D
Sbjct: 317 VSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPC 376
Query: 124 FDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAPFANICLSNISLLINPGSYNSWECS 182
+ ++ + + + +I GT+ + +A F + +P + NI+L+ N G + CS
Sbjct: 377 PEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGGKETTMSCS 436
Query: 183 NI 184
NI
Sbjct: 437 NI 438
>sp|A1D7I1|PGXC_NEOFI Probable exopolygalacturonase C OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pgxC
PE=3 SV=1
Length = 440
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 4 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS-- 61
N+ I D ++ G DAI++ + + I + R T + QS S + G + +
Sbjct: 219 NISITDSVMYNGDDAIAVNT--PSHNIVFARNT-------IGYQSHGMSIGSLGKDPTDF 269
Query: 62 GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNI 106
I+N++ E + + D+L F++ G G +K +V + ++N+
Sbjct: 270 ANITNLRFEDVTVIDALYAARFKSWSGGKGLVKNVVWKNIRVFNV 314
>sp|Q4WX94|PGXC_ASPFU Probable exopolygalacturonase C OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pgxC
PE=3 SV=1
Length = 440
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 15/170 (8%)
Query: 4 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS-- 61
N+ I D ++ G DAI++ + + I + R T + QS S + G + +
Sbjct: 219 NISITDSVMFNGDDAIAVNT--PSHNIVFARNT-------IGYQSHGMSIGSLGKDPTDF 269
Query: 62 GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAF---GACGNCGS 118
I+N++ E + + D+L F++ G G +K +V + +N+ + + +
Sbjct: 270 ANITNLRFEDVTVIDALYAARFKSWSGGRGLVKNVVWKNIRTFNVTFPIFVTQSYSDQSA 329
Query: 119 HPDDDFDPDALPAIDQITFKDIIGT-NITIAGNFTGIQEAPFANICLSNI 167
DP + ++ T+ D GT N G+ + + + + N+ L N+
Sbjct: 330 SRSGTIDPFSSVMMEDFTWSDFSGTINTYHPGDGSCVTDPCWYNVGLPNL 379
>sp|Q0CXI3|PGXC_ASPTN Probable exopolygalacturonase C OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=pgxC PE=3 SV=1
Length = 432
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 4 NVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS-- 61
N+ I D ++ G DAI++ SG + I + R T + QS S + G + +
Sbjct: 208 NIRISDSVMYNGDDAIAVGSG--SHDIVFERNT-------IGYQSHGMSIGSLGKDPTDF 258
Query: 62 GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNI 106
I+N++ E + + D+L F++ G G +K + + ++N+
Sbjct: 259 ANITNLRFEDVTVIDALYAARFKSWTGGQGLVKNVTWKNIRVFNV 303
>sp|P58598|PGLR_RALSO Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000)
GN=pglA PE=3 SV=1
Length = 531
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 20/112 (17%)
Query: 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS---GSSVAFGS 58
S NV + + I+ G D +++K A G T R +L + G ++ GS
Sbjct: 293 STNVVLANSYISTGDDHVAIK--------ASGGAT-----RNLLFAHNHFYYGHGLSIGS 339
Query: 59 EMSGGISNVQVEKIHL--YDSL--NGIEFRTTKGRGGYIKQIVISDAELYNI 106
E GG+SN+QV + + DS NG+ ++ RGG + IV + + N+
Sbjct: 340 ETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNV 391
>sp|Q9I7F7|PR2_DROME Tyrosine-protein kinase PR2 OS=Drosophila melanogaster GN=PR2 PE=1
SV=3
Length = 1337
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 36 TTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQ 95
T + ++ +S + +++ G N ++K H Y+ EF T+ G Y+
Sbjct: 1069 TASLQFESIMEADTSKEGILQSPDVTDGFYNFSIQKEH-YNKGKDAEFEATQISGLYV-- 1125
Query: 96 IVISDAELYNINV-----AFGACGNCGSHPDDDFDPDALPAIDQIT 136
+D EL N+++ C +C + + PDALP+ + ++
Sbjct: 1126 ---NDDELRNLDIESSRRTATPCSSCSALESEHSQPDALPSTESVS 1168
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 76/219 (34%), Gaps = 55/219 (25%)
Query: 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS 61
S N+ IED I GH GI+ G + G E S
Sbjct: 264 SSNIVIEDLICGPGH------------GISIG---------------------SLGRENS 290
Query: 62 GG-ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYN------INVAF---- 110
+S V V D+ NG+ +T +G G I+ + E+ N IN +
Sbjct: 291 RAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSA 350
Query: 111 GACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG-NFTGIQEAPFANICLSNISL 169
AC N S I +T+K+I GT+ T A P +I LS+ISL
Sbjct: 351 SACQNQRSAVQ----------IQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISL 400
Query: 170 LINPGSYNSWECSNIHGSSESVFPEPCPELENSSSNSSS 208
+ G S N +G C L S+ S
Sbjct: 401 KLTSGKIASCLNDNANGYFSGHVIPACKNLSPSAKRKES 439
>sp|Q9QY40|PLXB3_MOUSE Plexin-B3 OS=Mus musculus GN=Plxnb3 PE=1 SV=2
Length = 1902
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 116 CGSHPDDDFDPDALPAIDQIT------FKDIIGTNITIA-GNFTGIQEAPFANICLSNIS 168
C + P D P+ P D +T F+D++ T T + + + +Q A C + +S
Sbjct: 569 CTTPPQDQMPPNP-PGSDHVTLPLALMFEDVVLTATTFSFYDCSAVQALEVAAPCRACVS 627
Query: 169 LLINPGSYNSWECSNIHGSSESVFPEPCPELENS 202
L W C SS ++ E CPE E +
Sbjct: 628 SL--------WRCHWCPQSSHCIYGEHCPEGEKA 653
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100
PE=2 SV=1
Length = 475
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSE 59
++ +V I + +++ G D IS+ +G +DV I+ V S G S+ + G
Sbjct: 267 NTRSVGIYNSVVSNGDDCISIGTG-----------CSDVDIQGVTCGPSHGISIGSLGVH 315
Query: 60 MSGG-ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNI 106
S +SN+ V + DS NG+ +T +G G + ++ + ++ N+
Sbjct: 316 NSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENV 363
>sp|Q1ZZM3|RHGE_ASPNG Probable rhamnogalacturonase E OS=Aspergillus niger GN=rhgE PE=3
SV=1
Length = 450
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 44/201 (21%)
Query: 3 DNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG 62
DN+ I D ++ + ++ K+ + + I + SS G A GS SG
Sbjct: 209 DNMWIHDIMVTNKDECVTTKTN-----------SHNFLIENIYCNSSGG--CAIGSLGSG 255
Query: 63 G-ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPD 121
+SN+ ++ +DS + ++ G G +S+A N F GN S
Sbjct: 256 ANVSNIVYRNVYTWDSNQMMMIKSNGGSGD------VSNAVFEN----FIGHGNAYSLDL 305
Query: 122 DDFDPDALPAIDQITFKDIIGTNITIAGNFTGI---------------QEAPFANICLSN 166
D + ++D I I NIT N+TG ++ P I L
Sbjct: 306 DSY----WSSMDAIDGDGIYYHNITFQ-NWTGTAVDGETRPPIRVICPEDTPCTEIALVQ 360
Query: 167 ISLLINPGSYNSWECSNIHGS 187
I L + G Y+ + C N +GS
Sbjct: 361 IDLWVEEGGYDEYICKNAYGS 381
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2
Length = 433
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGSE 59
++ N+ + + II G D IS++SG + +V I + G S+ + G +
Sbjct: 249 NTQNIRVSESIIGTGDDCISIESG-----------SQNVQINDITCGPGHGISIGSLGDD 297
Query: 60 MSGG-ISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNI 106
S +S V V+ L + NG+ +T +G G I+ + ++ N+
Sbjct: 298 NSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNV 345
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3
PE=2 SV=1
Length = 422
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 31/155 (20%)
Query: 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSV-AFGS- 58
++DNV I D IA G D +S+ GR + +V + RV+ G SV + G
Sbjct: 226 NADNVSILDSTIATGDDCVSV-----------GRGSNNVTVERVICGPGHGLSVGSLGKY 274
Query: 59 EMSGGISNVQVEKIHLYDSLNGIEFRTTKG----RGGYIKQIVISDAELYN---INVAFG 111
+ +S + V + ++ NG+ +T G + IK I + N I+ +G
Sbjct: 275 KNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYG 334
Query: 112 ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT 146
+ G D+ AI I FK+I GT IT
Sbjct: 335 SRGG-----------DSQVAISDILFKNIRGTTIT 358
>sp|P17969|CR3BA_BACTO Pesticidal crystal protein cry3Ba OS=Bacillus thuringiensis subsp.
tolworthi GN=cry3Ba PE=2 SV=1
Length = 659
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 131 AIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLIN---PGSYNSWEC 181
+D T KD +GT I++ G G+ PFA S +N P + W+
Sbjct: 64 VLDSSTVKDAVGTGISVVGQILGVVGVPFAGALTSFYQSFLNAIWPSDADPWKA 117
>sp|Q9GYZ0|KIF15_STRPU Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus
GN=KIF15 PE=1 SV=1
Length = 1463
Score = 30.8 bits (68), Expect = 7.9, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 31 AYGRPTTDVHIRRVLLQS----SSGSSVAF-----GSEMSGGISNVQVEKIHLYDSLNGI 81
AYG H RRV S SS S F E G+SN++V ++HL D
Sbjct: 202 AYGVLQAGWHNRRVAATSMNRESSRSHAVFTVSIESKEKKAGVSNIRVSQLHLVDLAGSE 261
Query: 82 EFRTTKGRGGYIKQ 95
+ TK G +K+
Sbjct: 262 RQKDTKAIGVRLKE 275
>sp|Q06117|CR3BB_BACTU Pesticidal crystal protein cry3Bb OS=Bacillus thuringiensis
GN=cry3Bb PE=1 SV=1
Length = 652
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 131 AIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLIN---PGSYNSWEC 181
+D T KD +GT I++ G G+ PFA S +N P + W+
Sbjct: 56 VLDNSTVKDAVGTGISVVGQILGVVGVPFAGALTSFYQSFLNTIWPSDADPWKA 109
>sp|A2QLQ5|RHGC_ASPNC Probable rhamnogalacturonase C OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=rhgC PE=3 SV=1
Length = 459
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 132 IDQITFKDIIGTNITIAGNFTGIQ---EAPFANICLSNISLLINPGSYNSWECSNIHGSS 188
+ +TF++ G +++ + +Q + P +I + N++L N +Y W+C N +G
Sbjct: 313 VSNLTFRNWHGESVSASRPVIRLQCDSDVPCYDITIENVNLWANDSNYVVWQCENAYGDG 372
Query: 189 ESV-FPEPCPELENSSSNSSSTC 210
+ E +LE +S + T
Sbjct: 373 ACLSSAEGTKDLETFTSKQTITA 395
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,312,214
Number of Sequences: 539616
Number of extensions: 3566162
Number of successful extensions: 7849
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 7821
Number of HSP's gapped (non-prelim): 47
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)