Query 038330
Match_columns 223
No_of_seqs 174 out of 1370
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03003 Probable polygalactur 100.0 1.4E-39 3E-44 296.9 26.3 191 1-204 195-396 (456)
2 PLN02155 polygalacturonase 100.0 3.2E-39 6.8E-44 291.5 25.1 185 1-198 202-393 (394)
3 PLN02793 Probable polygalactur 100.0 3.8E-39 8.3E-44 294.9 26.0 188 1-201 234-427 (443)
4 PLN02188 polygalacturonase/gly 100.0 1.2E-38 2.6E-43 288.8 25.5 184 1-197 212-404 (404)
5 PLN02218 polygalacturonase ADP 100.0 2.4E-38 5.2E-43 288.6 24.1 178 1-197 249-431 (431)
6 PLN03010 polygalacturonase 100.0 5.8E-38 1.3E-42 284.1 25.4 184 1-198 214-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.4E-35 3.1E-40 263.0 22.3 170 1-187 149-323 (326)
8 COG5434 PGU1 Endopygalactoruna 99.9 3.7E-22 8E-27 185.2 12.3 112 1-113 294-405 (542)
9 PLN02218 polygalacturonase ADP 99.8 4.9E-19 1.1E-23 162.0 19.2 149 2-173 223-384 (431)
10 PLN03003 Probable polygalactur 99.8 1E-18 2.3E-23 160.0 20.2 150 1-173 168-333 (456)
11 PF00295 Glyco_hydro_28: Glyco 99.8 1.4E-18 3E-23 154.4 18.5 149 2-173 123-284 (326)
12 PLN02155 polygalacturonase 99.8 4E-18 8.7E-23 154.4 20.4 150 2-173 176-339 (394)
13 PLN02793 Probable polygalactur 99.8 3.4E-18 7.3E-23 157.1 19.5 148 2-172 208-369 (443)
14 PLN03010 polygalacturonase 99.8 7E-18 1.5E-22 153.3 19.9 150 2-174 188-351 (409)
15 PLN02188 polygalacturonase/gly 99.8 7.2E-18 1.6E-22 153.3 19.4 151 2-173 186-350 (404)
16 COG5434 PGU1 Endopygalactoruna 99.3 2.1E-11 4.6E-16 113.8 13.6 124 2-146 269-399 (542)
17 PF03718 Glyco_hydro_49: Glyco 98.7 2.3E-06 5E-11 79.5 17.7 144 2-173 379-555 (582)
18 PF03718 Glyco_hydro_49: Glyco 98.0 4.7E-05 1E-09 70.9 11.0 130 25-170 371-513 (582)
19 PF12541 DUF3737: Protein of u 98.0 0.00012 2.6E-09 62.7 11.4 32 2-47 18-49 (277)
20 TIGR03805 beta_helix_1 paralle 97.8 0.00043 9.4E-09 61.4 12.6 87 2-113 62-158 (314)
21 PF13229 Beta_helix: Right han 97.7 0.00038 8.3E-09 53.8 9.1 127 2-172 8-137 (158)
22 PF12541 DUF3737: Protein of u 97.5 0.0033 7.2E-08 54.0 12.9 12 159-170 212-223 (277)
23 TIGR03805 beta_helix_1 paralle 97.5 0.001 2.2E-08 59.1 9.9 88 1-112 84-179 (314)
24 PF12708 Pectate_lyase_3: Pect 97.2 0.0043 9.3E-08 51.1 10.7 72 36-115 120-207 (225)
25 PF13229 Beta_helix: Right han 97.1 0.0032 6.9E-08 48.6 7.8 106 36-174 8-114 (158)
26 smart00656 Amb_all Amb_all dom 96.8 0.013 2.8E-07 48.3 9.9 95 2-105 39-143 (190)
27 PF05048 NosD: Periplasmic cop 96.8 0.042 9.1E-07 46.2 12.7 86 2-112 21-106 (236)
28 smart00656 Amb_all Amb_all dom 96.5 0.013 2.7E-07 48.4 7.7 64 2-77 68-144 (190)
29 PF00544 Pec_lyase_C: Pectate 96.5 0.0092 2E-07 49.6 6.8 87 2-106 45-158 (200)
30 COG3866 PelB Pectate lyase [Ca 96.5 0.035 7.6E-07 48.8 10.4 90 2-106 124-229 (345)
31 PF05048 NosD: Periplasmic cop 96.1 0.061 1.3E-06 45.2 10.1 88 2-114 43-130 (236)
32 PF12708 Pectate_lyase_3: Pect 96.0 0.48 1E-05 38.7 14.8 108 39-166 94-219 (225)
33 PF00544 Pec_lyase_C: Pectate 95.3 0.032 7E-07 46.3 4.9 63 2-77 83-158 (200)
34 COG3866 PelB Pectate lyase [Ca 93.0 0.49 1.1E-05 41.8 7.6 65 1-77 152-229 (345)
35 TIGR03808 RR_plus_rpt_1 twin-a 92.5 5.5 0.00012 37.2 14.1 50 2-56 114-163 (455)
36 TIGR03808 RR_plus_rpt_1 twin-a 92.4 5.6 0.00012 37.1 14.1 22 1-22 142-164 (455)
37 PF09251 PhageP22-tail: Salmon 91.0 2.3 4.9E-05 39.4 9.7 66 36-103 263-347 (549)
38 PRK10123 wcaM putative colanic 85.2 1.4 3E-05 38.9 4.4 22 91-112 243-264 (464)
39 PF01696 Adeno_E1B_55K: Adenov 82.8 8.7 0.00019 35.2 8.6 44 37-86 121-165 (386)
40 PF07602 DUF1565: Protein of u 81.2 19 0.0004 31.0 9.7 47 38-84 123-170 (246)
41 PF09251 PhageP22-tail: Salmon 80.5 8.5 0.00019 35.7 7.7 88 3-99 264-365 (549)
42 PF01696 Adeno_E1B_55K: Adenov 68.6 93 0.002 28.6 11.2 59 4-81 122-182 (386)
43 smart00710 PbH1 Parallel beta- 65.9 9.3 0.0002 19.4 2.8 19 4-22 3-22 (26)
44 PLN02480 Probable pectinestera 63.1 37 0.00081 30.7 7.6 37 133-171 240-276 (343)
45 PLN02773 pectinesterase 57.3 1.4E+02 0.0031 26.6 11.4 133 2-171 101-239 (317)
46 PRK10123 wcaM putative colanic 56.8 13 0.00028 33.0 3.4 41 131-171 244-284 (464)
47 PF14592 Chondroitinas_B: Chon 52.2 82 0.0018 29.4 8.0 56 91-152 273-329 (425)
48 PLN02773 pectinesterase 45.7 2.2E+02 0.0048 25.4 15.3 105 37-173 102-213 (317)
49 PLN02634 probable pectinestera 44.0 2.3E+02 0.005 25.8 9.5 131 3-171 149-290 (359)
50 PF07602 DUF1565: Protein of u 43.4 1E+02 0.0022 26.5 6.8 72 4-84 123-195 (246)
51 TIGR03804 para_beta_helix para 42.2 41 0.00088 20.2 3.2 19 38-57 9-27 (44)
52 PLN02217 probable pectinestera 41.0 3.7E+02 0.0081 26.7 12.2 13 133-145 440-452 (670)
53 PRK10531 acyl-CoA thioesterase 40.6 1.6E+02 0.0034 27.5 7.9 40 66-105 239-282 (422)
54 PLN02682 pectinesterase family 36.7 3.4E+02 0.0073 24.9 9.6 132 3-172 163-305 (369)
55 PF03211 Pectate_lyase: Pectat 35.9 2.7E+02 0.0058 23.5 11.1 123 38-188 83-205 (215)
56 PLN02480 Probable pectinestera 35.8 3.3E+02 0.0072 24.6 9.2 42 2-55 131-182 (343)
57 PF01095 Pectinesterase: Pecti 35.0 58 0.0013 28.7 4.2 17 66-82 116-132 (298)
58 PLN02432 putative pectinestera 34.4 1.9E+02 0.0041 25.6 7.2 36 134-171 194-229 (293)
59 PLN02497 probable pectinestera 34.1 1.8E+02 0.004 26.1 7.2 38 133-172 227-264 (331)
60 PLN02176 putative pectinestera 33.3 2.1E+02 0.0045 25.9 7.4 37 133-171 234-270 (340)
61 PLN02170 probable pectinestera 29.6 5.2E+02 0.011 24.9 10.4 111 36-173 317-428 (529)
62 PLN02713 Probable pectinestera 29.3 2.5E+02 0.0054 27.2 7.7 40 133-172 443-489 (566)
63 PLN02671 pectinesterase 29.3 4.2E+02 0.009 24.2 8.7 110 36-172 185-295 (359)
64 PF08480 Disaggr_assoc: Disagg 29.2 3.3E+02 0.0072 22.6 8.8 14 64-77 33-46 (198)
65 PLN02197 pectinesterase 27.9 1.7E+02 0.0036 28.6 6.2 39 133-171 468-513 (588)
66 PLN02416 probable pectinestera 27.4 1.1E+02 0.0024 29.5 4.9 39 133-171 420-465 (541)
67 PLN02304 probable pectinestera 27.2 3E+02 0.0065 25.3 7.4 37 133-171 275-311 (379)
68 PLN02432 putative pectinestera 26.6 4.5E+02 0.0097 23.2 9.4 42 3-56 94-139 (293)
69 PLN02708 Probable pectinestera 26.3 1.5E+02 0.0033 28.6 5.6 40 133-172 437-487 (553)
70 PLN02301 pectinesterase/pectin 26.2 1.6E+02 0.0035 28.4 5.8 40 133-172 426-472 (548)
71 PF14592 Chondroitinas_B: Chon 25.9 1.7E+02 0.0037 27.3 5.7 24 91-114 307-330 (425)
72 PLN02698 Probable pectinestera 24.0 1.6E+02 0.0035 28.0 5.3 40 133-172 373-419 (497)
73 PLN02506 putative pectinestera 23.8 1.7E+02 0.0037 28.2 5.4 37 133-171 422-458 (537)
74 PF01095 Pectinesterase: Pecti 23.5 3.9E+02 0.0085 23.5 7.4 146 2-184 86-247 (298)
75 PLN02313 Pectinesterase/pectin 23.4 1.6E+02 0.0034 28.7 5.2 13 133-145 465-477 (587)
76 PLN02488 probable pectinestera 23.0 2.1E+02 0.0045 27.4 5.7 39 133-171 387-432 (509)
77 PLN02634 probable pectinestera 22.6 4.3E+02 0.0094 24.1 7.5 110 36-173 153-267 (359)
78 PF05342 Peptidase_M26_N: M26 22.4 46 0.00099 28.7 1.2 17 90-106 211-227 (250)
79 PLN03043 Probable pectinestera 21.8 2E+02 0.0044 27.6 5.6 39 133-171 416-461 (538)
80 PLN02933 Probable pectinestera 21.6 2.1E+02 0.0046 27.5 5.6 50 133-183 408-464 (530)
81 PLN02665 pectinesterase family 20.8 6.5E+02 0.014 23.0 11.0 133 2-171 153-297 (366)
82 PLN02201 probable pectinestera 20.6 2.9E+02 0.0063 26.5 6.3 40 133-172 396-442 (520)
83 PLN02995 Probable pectinestera 20.6 1.8E+02 0.004 28.0 5.0 39 133-171 415-460 (539)
84 PLN02314 pectinesterase 20.1 2.4E+02 0.0051 27.5 5.7 40 133-172 468-509 (586)
No 1
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.4e-39 Score=296.87 Aligned_cols=191 Identities=26% Similarity=0.434 Sum_probs=163.8
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCC----CCEEEEEEEeeEEeC
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYD 76 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~----g~v~NI~v~n~~i~~ 76 (223)
+|+||+|+||+|.+||||||||++ ++||+|+||+|. + +|||+|||++. +.|+||+|+||+|.+
T Consensus 195 ~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~I~n~~c~-~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~ 261 (456)
T PLN03003 195 ASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCG-P-GHGISIGSLGKDGETATVENVCVQNCNFRG 261 (456)
T ss_pred CcceEEEEecEEecCCCeEEeCCC-----------CccEEEEeeEEE-C-CCCeEEeeccCCCCcceEEEEEEEeeEEEC
Confidence 589999999999999999999997 899999999998 5 89999999985 459999999999999
Q ss_pred CCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecCCCC-CCCC-CCCCCCcEEEEEEEEEEEeccc-eeEEEEe
Q 038330 77 SLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHP-DDDF-DPDALPAIDQITFKDIIGTNIT-IAGNFTG 153 (223)
Q Consensus 77 ~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~-~~~~-~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g 153 (223)
+.+|+|||||++++|+|+||+|+||+|+++.+||.|+++|...+ ...+ .+...+.|+||+|+||+++... .++.|.|
T Consensus 262 T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~C 341 (456)
T PLN03003 262 TMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRC 341 (456)
T ss_pred CCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEe
Confidence 99999999999989999999999999999999999999997422 1111 1222359999999999998654 5889999
Q ss_pred cCCCCEEeEEEEeEEEEecC-C--CCCCceEEeeecCC-CceeCCCCCCCCCCCC
Q 038330 154 IQEAPFANICLSNISLLINP-G--SYNSWECSNIHGSS-ESVFPEPCPELENSSS 204 (223)
Q Consensus 154 ~~~~~i~nI~f~NV~i~~~~-~--~~~~~~c~nv~g~~-~~~~p~~c~~~~~~~~ 204 (223)
.++.||+||+|+||+++... + ....|+|+||+|.. +.++|.||.++...-+
T Consensus 342 s~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~~~~ 396 (456)
T PLN03003 342 SERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTDMF 396 (456)
T ss_pred CCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccCCCcc
Confidence 99999999999999999863 2 23579999999988 4455558998876443
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=3.2e-39 Score=291.49 Aligned_cols=185 Identities=24% Similarity=0.353 Sum_probs=161.8
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCC----CCCEEEEEEEeeEEeC
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM----SGGISNVQVEKIHLYD 76 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~----~g~v~NI~v~n~~i~~ 76 (223)
+|+||+|+||+|.+||||||||++ ++||+|+||+|. + +|||+|||++ .++|+||+|+||+|.+
T Consensus 202 ~s~nV~I~~~~I~~gDDcIaik~g-----------s~nI~I~n~~c~-~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 202 FSTGVTFTGSTVQTGDDCVAIGPG-----------TRNFLITKLACG-P-GHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred cceeEEEEeeEEecCCceEEcCCC-----------CceEEEEEEEEE-C-CceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 589999999999999999999997 899999999998 5 8999999983 6789999999999999
Q ss_pred CCceEEEEEecC-CCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccc-eeEEEEec
Q 038330 77 SLNGIEFRTTKG-RGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGI 154 (223)
Q Consensus 77 ~~~gi~Ikt~~g-~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~ 154 (223)
+.+|+|||||.+ ++|+|+||+|+||+|++++.||.|+++|.........+...+.|+||+|+||+++... .++.|.|.
T Consensus 269 t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~ 348 (394)
T PLN02155 269 SQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCS 348 (394)
T ss_pred CCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeC
Confidence 999999999865 6899999999999999999999999999643221111122248999999999999874 68899999
Q ss_pred CCCCEEeEEEEeEEEEecCCCCCCceEEeeecCC-CceeCCCCCC
Q 038330 155 QEAPFANICLSNISLLINPGSYNSWECSNIHGSS-ESVFPEPCPE 198 (223)
Q Consensus 155 ~~~~i~nI~f~NV~i~~~~~~~~~~~c~nv~g~~-~~~~p~~c~~ 198 (223)
++.||+||+|+||+++...+.+..++|+|++|.. +.++|.||.+
T Consensus 349 ~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 349 KSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred CCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 9999999999999999987665689999999986 6668889974
No 3
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=3.8e-39 Score=294.95 Aligned_cols=188 Identities=23% Similarity=0.378 Sum_probs=163.9
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCC----CCCEEEEEEEeeEEeC
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM----SGGISNVQVEKIHLYD 76 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~----~g~v~NI~v~n~~i~~ 76 (223)
+|+||+|+||+|.+|||||+||++ ++||+|+||+|. + +|||+|||++ .++|+||+|+||+|.+
T Consensus 234 ~s~nV~I~n~~I~~gDDcIaik~~-----------s~nI~I~n~~c~-~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~~ 300 (443)
T PLN02793 234 ASRGVVIKDSIVRTGDDCISIVGN-----------SSRIKIRNIACG-P-GHGISIGSLGKSNSWSEVRDITVDGAFLSN 300 (443)
T ss_pred ccceEEEEeCEEeCCCCeEEecCC-----------cCCEEEEEeEEe-C-CccEEEecccCcCCCCcEEEEEEEccEEeC
Confidence 589999999999999999999986 899999999997 5 8999999984 4789999999999999
Q ss_pred CCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccc-eeEEEEecC
Q 038330 77 SLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQ 155 (223)
Q Consensus 77 ~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~ 155 (223)
+.+|+|||||++++|.|+||+|+||+|+++.+||.|+++|.........+.....|+||+|+||+++... .++.|.|.+
T Consensus 301 t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~ 380 (443)
T PLN02793 301 TDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSD 380 (443)
T ss_pred CCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCC
Confidence 9999999999999999999999999999999999999999642211111222348999999999999854 589999999
Q ss_pred CCCEEeEEEEeEEEEecCCCCCCceEEeeecCC-CceeCCCCCCCCC
Q 038330 156 EAPFANICLSNISLLINPGSYNSWECSNIHGSS-ESVFPEPCPELEN 201 (223)
Q Consensus 156 ~~~i~nI~f~NV~i~~~~~~~~~~~c~nv~g~~-~~~~p~~c~~~~~ 201 (223)
+.||+||+|+||+++...+....+.|+|++|.. +.+.|.||.+...
T Consensus 381 ~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~~~~ 427 (443)
T PLN02793 381 SSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFSDST 427 (443)
T ss_pred CCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccccCCC
Confidence 999999999999999876555579999999988 6688999986544
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.2e-38 Score=288.78 Aligned_cols=184 Identities=22% Similarity=0.354 Sum_probs=160.7
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEcc----CCCCCEEEEEEEeeEEeC
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGS----EMSGGISNVQVEKIHLYD 76 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGS----e~~g~v~NI~v~n~~i~~ 76 (223)
+|+||+|+||+|.+|||||++|++ ++||+|+||.|. + +|||+||| |+.++|+||+|+||++.+
T Consensus 212 ~s~nV~I~n~~I~~GDDcIaiksg-----------~~nI~I~n~~c~-~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~~ 278 (404)
T PLN02188 212 RSSGVYISDSRIGTGDDCISIGQG-----------NSQVTITRIRCG-P-GHGISVGSLGRYPNEGDVTGLVVRDCTFTG 278 (404)
T ss_pred CcccEEEEeeEEeCCCcEEEEccC-----------CccEEEEEEEEc-C-CCcEEeCCCCCCCcCCcEEEEEEEeeEEEC
Confidence 589999999999999999999997 789999999997 5 89999999 777899999999999999
Q ss_pred CCceEEEEEecC--CCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccc-eeEEEEe
Q 038330 77 SLNGIEFRTTKG--RGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTG 153 (223)
Q Consensus 77 ~~~gi~Ikt~~g--~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g 153 (223)
+.+|+|||||.+ ++|+|+||+|+||+|++++.||.|+++|.....+...+...+.|+||+|+||+++... .++.|.|
T Consensus 279 t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~c 358 (404)
T PLN02188 279 TTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKC 358 (404)
T ss_pred CCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEE
Confidence 999999999976 3589999999999999999999999999753322111122358999999999998864 6889999
Q ss_pred cCCCCEEeEEEEeEEEEecCCC-CCCceEEeeecCC-CceeCCCCC
Q 038330 154 IQEAPFANICLSNISLLINPGS-YNSWECSNIHGSS-ESVFPEPCP 197 (223)
Q Consensus 154 ~~~~~i~nI~f~NV~i~~~~~~-~~~~~c~nv~g~~-~~~~p~~c~ 197 (223)
.++.||+||+|+||+++.+.+. ...|.|+|++|.. +.++|.||+
T Consensus 359 s~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 359 SRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred CCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 9999999999999999987543 3579999999987 688899995
No 5
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.4e-38 Score=288.64 Aligned_cols=178 Identities=21% Similarity=0.381 Sum_probs=156.6
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCC----CCEEEEEEEeeEEeC
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS----GGISNVQVEKIHLYD 76 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~----g~v~NI~v~n~~i~~ 76 (223)
+|+||+|+||+|.+||||||||++ ++||+|+||+|. + +|||+||||+. +.|+||+|+||++.+
T Consensus 249 ss~nV~I~n~~I~tGDDcIaIksg-----------s~nI~I~n~~c~-~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~~ 315 (431)
T PLN02218 249 NTQNIRVSNSIIGTGDDCISIESG-----------SQNVQINDITCG-P-GHGISIGSLGDDNSKAFVSGVTVDGAKLSG 315 (431)
T ss_pred ccceEEEEccEEecCCceEEecCC-----------CceEEEEeEEEE-C-CCCEEECcCCCCCCCceEEEEEEEccEEec
Confidence 589999999999999999999997 899999999997 5 89999999984 579999999999999
Q ss_pred CCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccc-eeEEEEecC
Q 038330 77 SLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQ 155 (223)
Q Consensus 77 ~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~ 155 (223)
+.+|+|||||++++|+|+||+|+||+|+++++||.|++.|.....+..++.. +.|+||+|+||+++... .++.|.|.+
T Consensus 316 t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~-v~I~nI~~~NI~gtsa~~~ai~l~cs~ 394 (431)
T PLN02218 316 TDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSA-VQVKNVVYRNISGTSASDVAITFNCSK 394 (431)
T ss_pred CCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCC-eEEEEEEEEeEEEEecCCcEEEEEECC
Confidence 9999999999999999999999999999999999999999764433333333 48999999999999764 688999999
Q ss_pred CCCEEeEEEEeEEEEecCCCCCCceEEeeecCCCceeCCCCC
Q 038330 156 EAPFANICLSNISLLINPGSYNSWECSNIHGSSESVFPEPCP 197 (223)
Q Consensus 156 ~~~i~nI~f~NV~i~~~~~~~~~~~c~nv~g~~~~~~p~~c~ 197 (223)
+.||+||+|+||+++.. ...|.||++....+.+++|+
T Consensus 395 ~~pc~nI~l~nV~i~~~-----~~~c~n~~~~~~~~~~p~c~ 431 (431)
T PLN02218 395 NYPCQGIVLDNVNIKGG-----KATCTNANVVDKGAVSPQCN 431 (431)
T ss_pred CCCEeeEEEEeEEEECC-----eeeEEEeeEEEcccCCCCCC
Confidence 99999999999999863 35799999987333444885
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=5.8e-38 Score=284.06 Aligned_cols=184 Identities=22% Similarity=0.350 Sum_probs=162.1
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCC----EEEEEEEeeEEeC
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGG----ISNVQVEKIHLYD 76 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~----v~NI~v~n~~i~~ 76 (223)
+|+||+|+||+|.+||||||||++ +.|+.|+++.|. + +|||+|||++.++ |+||+|+||+|.+
T Consensus 214 ~s~nV~I~n~~I~~gDDcIaiksg-----------s~ni~I~~~~C~-~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~ 280 (409)
T PLN03010 214 YSTNINIFDSTIQTGDDCIAINSG-----------SSNINITQINCG-P-GHGISVGSLGADGANAKVSDVHVTHCTFNQ 280 (409)
T ss_pred ccceEEEEeeEEecCCCeEEecCC-----------CCcEEEEEEEeE-C-cCCEEEccCCCCCCCCeeEEEEEEeeEEeC
Confidence 589999999999999999999997 678999999997 5 8999999998654 9999999999999
Q ss_pred CCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecCCCCCC-CCCCCCCCcEEEEEEEEEEEeccc-eeEEEEec
Q 038330 77 SLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDD-DFDPDALPAIDQITFKDIIGTNIT-IAGNFTGI 154 (223)
Q Consensus 77 ~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~-~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~ 154 (223)
+.+|+|||||.+++|+|+||+|+||+|+++++||.|+++|...... ..++++ ..|+||+|+||+++... .++.|.|.
T Consensus 281 t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~-v~Isdi~~~ni~GT~~~~~~i~l~Cs 359 (409)
T PLN03010 281 TTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSA-VAISNVKYVGFRGTTSNENAITLKCS 359 (409)
T ss_pred CCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCc-eEEEeEEEEeeEEEeCCCccEEEEeC
Confidence 9999999999999999999999999999999999999999753221 222333 48999999999998654 68999999
Q ss_pred CCCCEEeEEEEeEEEEecCCCCCCceEEeeecCC-CceeCCCCCC
Q 038330 155 QEAPFANICLSNISLLINPGSYNSWECSNIHGSS-ESVFPEPCPE 198 (223)
Q Consensus 155 ~~~~i~nI~f~NV~i~~~~~~~~~~~c~nv~g~~-~~~~p~~c~~ 198 (223)
+..||+||+|+||+++...+.++.+.|.|+.+.. +.+.|.+|.+
T Consensus 360 ~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 360 AITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred CCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCcccc
Confidence 9999999999999999886656789999999976 7788889983
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.4e-35 Score=263.02 Aligned_cols=170 Identities=29% Similarity=0.448 Sum_probs=149.8
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCC----CEEEEEEEeeEEeC
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSG----GISNVQVEKIHLYD 76 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g----~v~NI~v~n~~i~~ 76 (223)
+|+||+|+||+|+++|||||||++ ..||+|+||+|. + +|||+||||+.+ .|+||+|+||++.+
T Consensus 149 ~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~-~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~~ 215 (326)
T PF00295_consen 149 SSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCS-G-GHGISIGSEGSGGSQNDIRNVTFENCTIIN 215 (326)
T ss_dssp SEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEE-S-SSEEEEEEESSSSE--EEEEEEEEEEEEES
T ss_pred eeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEe-c-cccceeeeccCCccccEEEeEEEEEEEeec
Confidence 589999999999999999999997 569999999998 4 899999999976 59999999999999
Q ss_pred CCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccc-eeEEEEecC
Q 038330 77 SLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQ 155 (223)
Q Consensus 77 ~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~ 155 (223)
+.+|++||++++++|.|+||+|+||+|+++.+||.|++.|...... ..++..+.|+||+|+||+++... .++.|.|.+
T Consensus 216 t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~-~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~ 294 (326)
T PF00295_consen 216 TDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPC-GKPPSGVSISNITFRNITGTSAGSSAISIDCSP 294 (326)
T ss_dssp ESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEES-SCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BT
T ss_pred cceEEEEEEecccceEEeceEEEEEEecCCceEEEEEecccccccc-CcccCCceEEEEEEEeeEEEeccceEEEEEECC
Confidence 9999999999999999999999999999999999999998752211 12223348999999999999987 789999999
Q ss_pred CCCEEeEEEEeEEEEecCCCCCCceEEeeecC
Q 038330 156 EAPFANICLSNISLLINPGSYNSWECSNIHGS 187 (223)
Q Consensus 156 ~~~i~nI~f~NV~i~~~~~~~~~~~c~nv~g~ 187 (223)
+.||+||+|+||+++. . ...+.|.|++..
T Consensus 295 ~~~~~ni~f~nv~i~~-g--~~~~~c~nv~~~ 323 (326)
T PF00295_consen 295 GSPCSNITFENVNITG-G--KKPAQCKNVPSG 323 (326)
T ss_dssp TSSEEEEEEEEEEEES-S--BSESEEBSCCTT
T ss_pred cCcEEeEEEEeEEEEc-C--CcCeEEECCCCC
Confidence 9999999999999999 3 357999998753
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=3.7e-22 Score=185.24 Aligned_cols=112 Identities=32% Similarity=0.548 Sum_probs=104.5
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCce
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG 80 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~g 80 (223)
||+||+|++|+|++|||||++|++...++.+...|++||+|+||++..+ +.++.+|||+.++|+||++|||+|.++++|
T Consensus 294 sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~~~~~~d~G 372 (542)
T COG5434 294 SCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDCVMDNTDRG 372 (542)
T ss_pred cceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEeeeeccCcce
Confidence 7999999999999999999999999888777788999999999999987 888999999999999999999999999999
Q ss_pred EEEEEecCCCceEEEEEEEeEEEEecCeeeEEe
Q 038330 81 IEFRTTKGRGGYIKQIVISDAELYNINVAFGAC 113 (223)
Q Consensus 81 i~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~ 113 (223)
|||||..+++|.++||+|++++|.++..++.+.
T Consensus 373 LRikt~~~~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 373 LRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eeeeeecccceeEEEEEEecccccCcccceeee
Confidence 999999999999999999999999986544443
No 9
>PLN02218 polygalacturonase ADPG
Probab=99.83 E-value=4.9e-19 Score=161.98 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=121.9
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
|+||+|+|.+|.+..| ..|+||+++.. ++||+|+||++.++ +++|+|+| +.+||+|+||++.. .+||
T Consensus 223 ~~nV~i~~v~I~a~~~------spNTDGIdi~s-s~nV~I~n~~I~tG-DDcIaIks----gs~nI~I~n~~c~~-GHGi 289 (431)
T PLN02218 223 CSNVQVSNVVVTAPAD------SPNTDGIHITN-TQNIRVSNSIIGTG-DDCISIES----GSQNVQINDITCGP-GHGI 289 (431)
T ss_pred eeeEEEEEEEEeCCCC------CCCCCcEeecc-cceEEEEccEEecC-CceEEecC----CCceEEEEeEEEEC-CCCE
Confidence 6777777777766433 25899998864 89999999999999 99999998 36899999999976 4799
Q ss_pred EEEEecCC--CceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecC----
Q 038330 82 EFRTTKGR--GGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ---- 155 (223)
Q Consensus 82 ~Ikt~~g~--gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~---- 155 (223)
.|+|.... .+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||+++....|+.|....
T Consensus 290 sIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~ 359 (431)
T PLN02218 290 SIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS 359 (431)
T ss_pred EECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccccEEEEeeccCCC
Confidence 99987422 3689999999999999999999998632 2358999999999999999888876321
Q ss_pred -------CCCEEeEEEEeEEEEecC
Q 038330 156 -------EAPFANICLSNISLLINP 173 (223)
Q Consensus 156 -------~~~i~nI~f~NV~i~~~~ 173 (223)
...++||+|+||+.+...
T Consensus 360 ~~~~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 360 KCTSQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCCCCeEEEEEEEEeEEEEecC
Confidence 124999999999998764
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.82 E-value=1e-18 Score=160.03 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=123.8
Q ss_pred CcccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCce
Q 038330 1 SSDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG 80 (223)
Q Consensus 1 s~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~g 80 (223)
.|+||+|++..|.+..+ ..|+||+++.. ++||+|+||.+.++ +++|+|++. .+||+|+||++... +|
T Consensus 168 ~c~nV~i~~l~I~ap~~------spNTDGIDi~~-S~nV~I~n~~I~tG-DDCIaiksg----s~NI~I~n~~c~~G-HG 234 (456)
T PLN03003 168 ECNYVTISSLRINAPES------SPNTDGIDVGA-SSNVVIQDCIIATG-DDCIAINSG----TSNIHISGIDCGPG-HG 234 (456)
T ss_pred ccccEEEEEEEEeCCCC------CCCCCcEeecC-cceEEEEecEEecC-CCeEEeCCC----CccEEEEeeEEECC-CC
Confidence 37888888888887543 36899999864 89999999999998 999999973 68999999999765 79
Q ss_pred EEEEEecCC--CceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecC---
Q 038330 81 IEFRTTKGR--GGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ--- 155 (223)
Q Consensus 81 i~Ikt~~g~--gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~--- 155 (223)
|.|+|.... .+.|+||+++|+++.+..++++|+.+.+ +.+.++||+|+||++.+...|+.|....
T Consensus 235 ISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~ 304 (456)
T PLN03003 235 ISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVENPIIIDQFYNGG 304 (456)
T ss_pred eEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccceEEEEcccCCC
Confidence 999987432 2579999999999999999999998632 2258999999999999999898884221
Q ss_pred -----------CCCEEeEEEEeEEEEecC
Q 038330 156 -----------EAPFANICLSNISLLINP 173 (223)
Q Consensus 156 -----------~~~i~nI~f~NV~i~~~~ 173 (223)
...++||+|+||+.+...
T Consensus 305 ~~~~~~~~~~s~v~IsnI~f~NI~GTs~~ 333 (456)
T PLN03003 305 DSDNAKDRKSSAVEVSKVVFSNFIGTSKS 333 (456)
T ss_pred CCCCcccCCCCCcEEEeEEEEeEEEEeCc
Confidence 126899999999988654
No 11
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.81 E-value=1.4e-18 Score=154.39 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=120.3
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
|+||+|++..|.+..+. .++||+++.. |+||+|+||++.++ +++|+|++... ||+++||++.+. +|+
T Consensus 123 ~~nv~i~~i~I~~~~~~------~NtDGid~~~-s~nv~I~n~~i~~g-DD~Iaiks~~~----ni~v~n~~~~~g-hGi 189 (326)
T PF00295_consen 123 CDNVTISNITINNPANS------PNTDGIDIDS-SKNVTIENCFIDNG-DDCIAIKSGSG----NILVENCTCSGG-HGI 189 (326)
T ss_dssp EEEEEEESEEEEEGGGC------TS--SEEEES-EEEEEEESEEEESS-SESEEESSEEC----EEEEESEEEESS-SEE
T ss_pred cCCeEEcceEEEecCCC------CCcceEEEEe-eeEEEEEEeecccc-cCccccccccc----ceEEEeEEEecc-ccc
Confidence 67888888888775432 6789988763 89999999999998 99999998543 999999999774 789
Q ss_pred EEEEecCCC--ceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEec-C---
Q 038330 82 EFRTTKGRG--GYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGI-Q--- 155 (223)
Q Consensus 82 ~Ikt~~g~g--g~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~-~--- 155 (223)
.|.+....+ ..|+||+|+|+++.+..+++.|+...+ +.+.++||+|+||+++....|+.|.-. .
T Consensus 190 siGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~----------~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~ 259 (326)
T PF00295_consen 190 SIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG----------GGGYVSNITFENITMENVKYPIFIDQDYRDGG 259 (326)
T ss_dssp EEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT----------TSEEEEEEEEEEEEEEEESEEEEEEEEECTTE
T ss_pred eeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc----------cceEEeceEEEEEEecCCceEEEEEecccccc
Confidence 999874322 369999999999999999999998532 235899999999999999888877521 1
Q ss_pred -------CCCEEeEEEEeEEEEecC
Q 038330 156 -------EAPFANICLSNISLLINP 173 (223)
Q Consensus 156 -------~~~i~nI~f~NV~i~~~~ 173 (223)
...++||+|+||+.+...
T Consensus 260 ~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 260 PCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp ESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred ccCcccCCceEEEEEEEeeEEEecc
Confidence 125999999999999886
No 12
>PLN02155 polygalacturonase
Probab=99.81 E-value=4e-18 Score=154.43 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=122.7
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
|+||+|++..|.+..+ ..|+||+++.. ++||+|+||++.++ +++|+|++ +.+||+|+||++... +|+
T Consensus 176 ~~nv~i~~v~I~~p~~------~~NtDGidi~~-s~nV~I~~~~I~~g-DDcIaik~----gs~nI~I~n~~c~~G-hGi 242 (394)
T PLN02155 176 CTNVVVRNVKLVAPGN------SPNTDGFHVQF-STGVTFTGSTVQTG-DDCVAIGP----GTRNFLITKLACGPG-HGV 242 (394)
T ss_pred eeeEEEEEEEEECCCC------CCCCCcccccc-ceeEEEEeeEEecC-CceEEcCC----CCceEEEEEEEEECC-ceE
Confidence 6788888888877433 47899998853 89999999999998 99999987 368999999999874 799
Q ss_pred EEEEecC--CCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecC----
Q 038330 82 EFRTTKG--RGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ---- 155 (223)
Q Consensus 82 ~Ikt~~g--~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~---- 155 (223)
.|+|... ..+.|+||+++|+++.+..++++|+.+.+. +.+.++||+|+||++++...|+.|....
T Consensus 243 sIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~---------~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~ 313 (394)
T PLN02155 243 SIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP---------STGFVRNVFFQDLVMKNVENPIIIDQNYCPTH 313 (394)
T ss_pred EeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC---------CCEEEEEEEEEeEEEcCccccEEEEecccCCC
Confidence 9998621 247799999999999999999999975321 2258999999999999999888884211
Q ss_pred --------CCCEEeEEEEeEEEEecC
Q 038330 156 --------EAPFANICLSNISLLINP 173 (223)
Q Consensus 156 --------~~~i~nI~f~NV~i~~~~ 173 (223)
...++||+|+||+.+...
T Consensus 314 ~~~~~~~s~v~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 314 EGCPNEYSGVKISQVTYKNIQGTSAT 339 (394)
T ss_pred CCCcCCCCCeEEEEEEEEeeEEEecC
Confidence 125999999999998763
No 13
>PLN02793 Probable polygalacturonase
Probab=99.80 E-value=3.4e-18 Score=157.08 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=121.1
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
|+||+|++.+|.+..+ ..|+||+++.. ++||+|+||++.++ +++|+|++ +.+||+|+||++... +||
T Consensus 208 ~~nv~i~~l~I~~p~~------spNTDGIdi~~-s~nV~I~n~~I~~g-DDcIaik~----~s~nI~I~n~~c~~G-hGi 274 (443)
T PLN02793 208 CRRVTISGLKVIAPAT------SPNTDGIHISA-SRGVVIKDSIVRTG-DDCISIVG----NSSRIKIRNIACGPG-HGI 274 (443)
T ss_pred cCcEEEEEEEEECCCC------CCCCCcEeeec-cceEEEEeCEEeCC-CCeEEecC----CcCCEEEEEeEEeCC-ccE
Confidence 6777777777776543 36899998863 89999999999998 99999986 368999999999775 799
Q ss_pred EEEEecC--CCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecC---C
Q 038330 82 EFRTTKG--RGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ---E 156 (223)
Q Consensus 82 ~Ikt~~g--~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~---~ 156 (223)
.|.+... ..+.|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++++...|+.|.... .
T Consensus 275 sIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~ 344 (443)
T PLN02793 275 SIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVSNPIIIDQYYCDSR 344 (443)
T ss_pred EEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCCceEEEEeeecCCC
Confidence 9998622 23679999999999999999999998632 2258999999999999999898885421 1
Q ss_pred ---------CCEEeEEEEeEEEEec
Q 038330 157 ---------APFANICLSNISLLIN 172 (223)
Q Consensus 157 ---------~~i~nI~f~NV~i~~~ 172 (223)
..++||+|+||+.+..
T Consensus 345 ~~~~~~ts~v~I~nI~~~nI~Gt~~ 369 (443)
T PLN02793 345 KPCANQTSAVKVENISFVHIKGTSA 369 (443)
T ss_pred CCCCCCCCCeEEEeEEEEEEEEEEc
Confidence 2489999999999874
No 14
>PLN03010 polygalacturonase
Probab=99.80 E-value=7e-18 Score=153.32 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=118.8
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
|+||+|+|..|.+..+ ..|+||+++.. ++||+|+||++.++ +++|+|++. -.|+.|+++.+... +||
T Consensus 188 ~~nv~i~~i~I~a~~~------s~NTDGiDi~~-s~nV~I~n~~I~~g-DDcIaiksg----s~ni~I~~~~C~~g-HGi 254 (409)
T PLN03010 188 CNYVAISKINILAPET------SPNTDGIDISY-STNINIFDSTIQTG-DDCIAINSG----SSNINITQINCGPG-HGI 254 (409)
T ss_pred cccEEEEEEEEeCCCC------CCCCCceeeec-cceEEEEeeEEecC-CCeEEecCC----CCcEEEEEEEeECc-CCE
Confidence 6667777777766432 36899998853 89999999999999 999999984 34777777777654 799
Q ss_pred EEEEecCC--CceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecC---C
Q 038330 82 EFRTTKGR--GGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ---E 156 (223)
Q Consensus 82 ~Ikt~~g~--gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~---~ 156 (223)
.|++.... ...|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||+++....|+.|.... .
T Consensus 255 sIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~ 324 (409)
T PLN03010 255 SVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQGYARNISFENITLINTKNPIIIDQQYIDKG 324 (409)
T ss_pred EEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCccEEEEeeccCCC
Confidence 99987332 2569999999999999999999998643 2258999999999999999898885321 1
Q ss_pred ---------CCEEeEEEEeEEEEecCC
Q 038330 157 ---------APFANICLSNISLLINPG 174 (223)
Q Consensus 157 ---------~~i~nI~f~NV~i~~~~~ 174 (223)
..++||+|+||+.+....
T Consensus 325 ~~~~~~~s~v~Isdi~~~ni~GT~~~~ 351 (409)
T PLN03010 325 KLDATKDSAVAISNVKYVGFRGTTSNE 351 (409)
T ss_pred CCCCCCCCceEEEeEEEEeeEEEeCCC
Confidence 268999999999986643
No 15
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.79 E-value=7.2e-18 Score=153.29 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=120.6
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
|+||+|++.+|.+..+ ..|+||+++.. ++||+|+||++.++ +++|+|++. .+||+|+|+.+... +||
T Consensus 186 ~~~v~i~~v~I~~~~~------spNtDGidi~~-s~nV~I~n~~I~~G-DDcIaiksg----~~nI~I~n~~c~~g-hGi 252 (404)
T PLN02188 186 CRNFKGSGLKISAPSD------SPNTDGIHIER-SSGVYISDSRIGTG-DDCISIGQG----NSQVTITRIRCGPG-HGI 252 (404)
T ss_pred cccEEEEEEEEeCCCC------CCCCCcEeeeC-cccEEEEeeEEeCC-CcEEEEccC----CccEEEEEEEEcCC-CcE
Confidence 6777777777776433 36899998863 89999999999998 999999874 46999999999664 799
Q ss_pred EEEEec--CCCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEec-----
Q 038330 82 EFRTTK--GRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGI----- 154 (223)
Q Consensus 82 ~Ikt~~--g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~----- 154 (223)
.|.|.- +..+.|+||+|+|+++.+..++++|+.+.+. .+.+.++||+|+||++.+...|+.|...
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~--------~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~ 324 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS--------PGKSAATNMTFENIVMNNVTNPIIIDQKYCPFY 324 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC--------CCceEEEEEEEEeEEecCccceEEEEccccCCC
Confidence 998842 1136699999999999999999999986331 1124899999999999999888887521
Q ss_pred -------CCCCEEeEEEEeEEEEecC
Q 038330 155 -------QEAPFANICLSNISLLINP 173 (223)
Q Consensus 155 -------~~~~i~nI~f~NV~i~~~~ 173 (223)
....++||+|+||+.+...
T Consensus 325 ~~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 325 SCESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred CCCcCCCCCcEEEeEEEEEEEEEecC
Confidence 1135999999999998864
No 16
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=2.1e-11 Score=113.83 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=101.1
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCC-------CCEEEEEEEeeEE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS-------GGISNVQVEKIHL 74 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~-------g~v~NI~v~n~~i 74 (223)
|+|++++|..|.+.++. |+||+++. .|+|++|++|+|..+ +++|+|+|... +.-+||+|+||.|
T Consensus 269 ~~nl~~~nl~I~~~~~~-------NtDG~d~~-sc~NvlI~~~~fdtg-DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~ 339 (542)
T COG5434 269 CDNLTFRNLTIDANRFD-------NTDGFDPG-SCSNVLIEGCRFDTG-DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYF 339 (542)
T ss_pred ccCceecceEEECCCCC-------CCCccccc-cceeEEEeccEEecC-CceEEeecccCCcccccccccccEEEeccee
Confidence 45555555555554331 68888875 599999999999998 99999998643 3469999999999
Q ss_pred eCCCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccc
Q 038330 75 YDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT 146 (223)
Q Consensus 75 ~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~ 146 (223)
.....++.+.++. +|-|+||++||+.|.+...+|.|+...+. .+.++||+|+++.+....
T Consensus 340 ~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~~----------gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 340 SSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDGR----------GGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred cccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeeccc----------ceeEEEEEEecccccCcc
Confidence 9888889999987 78899999999999998999999987432 258999999999998874
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.65 E-value=2.3e-06 Score=79.45 Aligned_cols=144 Identities=19% Similarity=0.267 Sum_probs=84.8
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCC-CCeEEEccCCCCCEEEEEEEeeEEeCCC--
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-GSSVAFGSEMSGGISNVQVEKIHLYDSL-- 78 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~-~~gi~IGSe~~g~v~NI~v~n~~i~~~~-- 78 (223)
++|-+|+|||+.+.||+|.+. -.|+.|+||++|... +.-+.+|.. +..+.||.|+|+++....
T Consensus 379 y~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViWk~~Ngpiiq~GW~-pr~isnv~veni~IIh~r~~ 444 (582)
T PF03718_consen 379 YPNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIWKNENGPIIQWGWT-PRNISNVSVENIDIIHNRWI 444 (582)
T ss_dssp -TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEEE-SSS-SEE--CS----EEEEEEEEEEEEE---S
T ss_pred cCCCeeeeeEEEecCchhhee-------------ecCcceeeeEEEecCCCCeEEeecc-ccccCceEEeeeEEEeeeee
Confidence 467789999999999998544 269999999999751 333777764 567999999999999762
Q ss_pred -------ceEEEEEecC----C------CceEEEEEEEeEEEEecCe-eeEEeeecCCCCCCCCCCCCCCcEEEEEEEEE
Q 038330 79 -------NGIEFRTTKG----R------GGYIKQIVISDAELYNINV-AFGACGNCGSHPDDDFDPDALPAIDQITFKDI 140 (223)
Q Consensus 79 -------~gi~Ikt~~g----~------gg~v~nI~~~ni~~~~~~~-~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI 140 (223)
.+|.--+..- . .-.||+++|+|+++++.-. .+.|.. +...+|+.++|+
T Consensus 445 ~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p--------------lqn~~nl~ikN~ 510 (582)
T PF03718_consen 445 WHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP--------------LQNYDNLVIKNV 510 (582)
T ss_dssp SGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE----------------SEEEEEEEEEEE
T ss_pred cccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEee--------------cCCCcceEEEEe
Confidence 3443322211 0 1368999999999998544 455542 225667777777
Q ss_pred EEeccc------eeEEEE---ec---CCCCEEeEEEEeEEEEecC
Q 038330 141 IGTNIT------IAGNFT---GI---QEAPFANICLSNISLLINP 173 (223)
Q Consensus 141 ~~~~~~------~~~~i~---g~---~~~~i~nI~f~NV~i~~~~ 173 (223)
.+..-. ....+. +. ......+|.|+|.++.++.
T Consensus 511 ~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 511 HFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp EECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred ecccccCcccccceeeccccccccccccccccceEEEeEEECCEE
Confidence 776211 011111 11 1235889999999987754
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.04 E-value=4.7e-05 Score=70.94 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=73.8
Q ss_pred CCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceEEEEE-ecCCCceEEEEEEEeEEE
Q 038330 25 WDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRT-TKGRGGYIKQIVISDAEL 103 (223)
Q Consensus 25 ~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~Ikt-~~g~gg~v~nI~~~ni~~ 103 (223)
.++||+.+ .+|=+|+||.++.. +++|++= -.|+.++||+++...+|--|.. |. ...++||+|+|+.+
T Consensus 371 ~qtDGi~l---y~nS~i~dcF~h~n-DD~iKlY------hS~v~v~~~ViWk~~Ngpiiq~GW~--pr~isnv~veni~I 438 (582)
T PF03718_consen 371 FQTDGIEL---YPNSTIRDCFIHVN-DDAIKLY------HSNVSVSNTVIWKNENGPIIQWGWT--PRNISNVSVENIDI 438 (582)
T ss_dssp TT----B-----TT-EEEEEEEEES-S-SEE--------STTEEEEEEEEEE-SSS-SEE--CS-----EEEEEEEEEEE
T ss_pred eccCCccc---cCCCeeeeeEEEec-Cchhhee------ecCcceeeeEEEecCCCCeEEeecc--ccccCceEEeeeEE
Confidence 36788755 68889999999987 9999762 3589999999998766655543 33 45699999999999
Q ss_pred EecCe---------eeEEe-eecCCCCCC-CCCCCCCCcEEEEEEEEEEEeccce-eEEEEecCCCCEEeEEEEeEEEE
Q 038330 104 YNINV---------AFGAC-GNCGSHPDD-DFDPDALPAIDQITFKDIIGTNITI-AGNFTGIQEAPFANICLSNISLL 170 (223)
Q Consensus 104 ~~~~~---------~i~i~-~~y~~~~~~-~~~~~~~~~i~nIt~~nI~~~~~~~-~~~i~g~~~~~i~nI~f~NV~i~ 170 (223)
-..++ +|... -+|.+-+.. ..+|. ..|++++|+|+++++.-. .++|.- ...-+|+.++|+.+.
T Consensus 439 Ih~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~--~ti~~~~~~nv~~EG~~~~l~ri~p--lqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 439 IHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPS--TTIRNMTFSNVRCEGMCPCLFRIYP--LQNYDNLVIKNVHFE 513 (582)
T ss_dssp EE---SSGGCTTT-ECEEE--BTTS-SSS--BEEE--EEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred EeeeeecccCCCCceeEecccccccccCCCCCCcc--cceeeEEEEeEEEecccceeEEEee--cCCCcceEEEEeecc
Confidence 76532 33332 244221110 00111 178999999999998653 344542 233556777777776
No 19
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.97 E-value=0.00012 Score=62.71 Aligned_cols=32 Identities=22% Similarity=0.612 Sum_probs=22.6
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEe
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQ 47 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~ 47 (223)
.+|+.|+||.|..|.- ++|- ++||.+.||.|.
T Consensus 18 ~~d~~l~~~~f~dGES--~LKe------------s~nI~~~~~~F~ 49 (277)
T PF12541_consen 18 SHDLRLENCTFADGES--PLKE------------SRNIELKNCIFK 49 (277)
T ss_pred cCCCEEEeeEEeCCCc--cccc------------ccceEEECCEEe
Confidence 4678888888885433 3442 788888888876
No 20
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.80 E-value=0.00043 Score=61.43 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=45.5
Q ss_pred cccEEEEeeEEecC-CceEEeccCCCcCCccCCCceecEEEEeEEEe--------cCCCCeEEEccCCCCCEEEEEEEee
Q 038330 2 SDNVCIEDCIIAMG-HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQ--------SSSGSSVAFGSEMSGGISNVQVEKI 72 (223)
Q Consensus 2 ~~nV~I~nc~i~~g-DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~--------~~~~~gi~IGSe~~g~v~NI~v~n~ 72 (223)
+++|+|++..+... .++|.++. +++++|+++.+. .+ ..||.+. ..++++|+|+
T Consensus 62 a~~VtI~~ltI~~~~~~GI~v~~------------s~~i~I~n~~i~~~~~~~~~~~-~~GI~~~-----~s~~v~I~~n 123 (314)
T TIGR03805 62 SDDVTLSDLAVENTKGDGVKVKG------------SDGIIIRRLRVEWTGGPKSSNG-AYGIYPV-----ESTNVLVEDS 123 (314)
T ss_pred eCCeEEEeeEEEcCCCCeEEEeC------------CCCEEEEeeEEEeccCccccCC-cceEEEe-----ccCCEEEECC
Confidence 45666666666542 34443332 455666666553 11 3444442 2456666666
Q ss_pred EEeCCC-ceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEe
Q 038330 73 HLYDSL-NGIEFRTTKGRGGYIKQIVISDAELYNINVAFGAC 113 (223)
Q Consensus 73 ~i~~~~-~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~ 113 (223)
++.+.. .||+++.. ++++|+|.++++..++|++.
T Consensus 124 ~i~g~~d~GIyv~~s-------~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 124 YVRGASDAGIYVGQS-------QNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred EEECCCcccEEECCC-------CCeEEECCEEccCcceEEEE
Confidence 665532 35554321 46677777776666666654
No 21
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.66 E-value=0.00038 Score=53.80 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=65.0
Q ss_pred cccEEEEeeEEec-CCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCce
Q 038330 2 SDNVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNG 80 (223)
Q Consensus 2 ~~nV~I~nc~i~~-gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~g 80 (223)
+.+++|++|.|.. +.++|.+... .+++|+||++... ..||.+... .++++++|++.+...+
T Consensus 8 ~~~~~i~~~~i~~~~~~gi~~~~~------------~~~~i~n~~i~~~-~~gi~~~~~-----~~~~i~~~~~~~~~~~ 69 (158)
T PF13229_consen 8 GSNVTIRNCTISNNGGDGIHVSGS------------SNITIENCTISNG-GYGIYVSGG-----SNVTISNNTISDNGSG 69 (158)
T ss_dssp CEC-EEESEEEESSSSECEEE-SS------------CESEEES-EEESS-TTSEEEECC-----ES-EEES-EEES-SEE
T ss_pred CcCeEEeeeEEEeCCCeEEEEEcC------------CCeEEECeEEECC-CcEEEEecC-----CCeEEECeEEEEccce
Confidence 4567888888877 5777776653 4478888888864 777777643 6777777777776544
Q ss_pred EEEEEecCCCceEEEEEEEeEEEEecCe-eeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccc-eeEEEEecCCCC
Q 038330 81 IEFRTTKGRGGYIKQIVISDAELYNINV-AFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNIT-IAGNFTGIQEAP 158 (223)
Q Consensus 81 i~Ikt~~g~gg~v~nI~~~ni~~~~~~~-~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~~~~ 158 (223)
+.+. . -.+++++++++.+... +|++.. .-++++|++-++.... .++.+....
T Consensus 70 i~~~--~-----~~~~~i~~~~i~~~~~~gi~~~~----------------~~~~~~i~~n~~~~~~~~gi~~~~~~--- 123 (158)
T PF13229_consen 70 IYVS--G-----SSNITIENNRIENNGDYGIYISN----------------SSSNVTIENNTIHNNGGSGIYLEGGS--- 123 (158)
T ss_dssp EECC--S------CS-EEES-EEECSSS-SCE-TC----------------EECS-EEES-EEECCTTSSCEEEECC---
T ss_pred EEEE--e-----cCCceecCcEEEcCCCccEEEec----------------cCCCEEEEeEEEEeCcceeEEEECCC---
Confidence 4443 1 1355666666665543 444431 1233555555555544 445555432
Q ss_pred EEeEEEEeEEEEec
Q 038330 159 FANICLSNISLLIN 172 (223)
Q Consensus 159 i~nI~f~NV~i~~~ 172 (223)
-.+++|++-++...
T Consensus 124 ~~~~~i~~n~i~~~ 137 (158)
T PF13229_consen 124 SPNVTIENNTISNN 137 (158)
T ss_dssp --S-EEECEEEECE
T ss_pred CCeEEEEEEEEEeC
Confidence 11344555555443
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.49 E-value=0.0033 Score=54.03 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=7.3
Q ss_pred EEeEEEEeEEEE
Q 038330 159 FANICLSNISLL 170 (223)
Q Consensus 159 i~nI~f~NV~i~ 170 (223)
+++++|+|.++.
T Consensus 212 ~~~L~l~nC~~~ 223 (277)
T PF12541_consen 212 CDNLVLENCTMI 223 (277)
T ss_pred ecceEEeCcEee
Confidence 556666666655
No 23
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.45 E-value=0.001 Score=59.08 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=62.3
Q ss_pred CcccEEEEeeEEe--------cCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEee
Q 038330 1 SSDNVCIEDCIIA--------MGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKI 72 (223)
Q Consensus 1 s~~nV~I~nc~i~--------~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~ 72 (223)
.|++++|+++.+. .+.++|.+. .++|++|++|.+....+.||.++. .+|+.|+|+
T Consensus 84 ~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~------------~s~~v~I~~n~i~g~~d~GIyv~~-----s~~~~v~nN 146 (314)
T TIGR03805 84 GSDGIIIRRLRVEWTGGPKSSNGAYGIYPV------------ESTNVLVEDSYVRGASDAGIYVGQ-----SQNIVVRNN 146 (314)
T ss_pred CCCCEEEEeeEEEeccCccccCCcceEEEe------------ccCCEEEECCEEECCCcccEEECC-----CCCeEEECC
Confidence 3789999999996 233444443 279999999999865356898864 579999999
Q ss_pred EEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEE
Q 038330 73 HLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGA 112 (223)
Q Consensus 73 ~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i 112 (223)
++.+...||.+... .++.+++-++.+...++.+
T Consensus 147 ~~~~n~~GI~i~~S-------~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 147 VAEENVAGIEIENS-------QNADVYNNIATNNTGGILV 179 (314)
T ss_pred EEccCcceEEEEec-------CCcEEECCEEeccceeEEE
Confidence 99998889988633 2344445455554455554
No 24
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.24 E-value=0.0043 Score=51.06 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=38.9
Q ss_pred eecEEEEeEEEecCCCCeEEEccCCC-----C-CEEEEEE---------EeeEEeCCCceEEEEEecCCCceEEEEEEEe
Q 038330 36 TTDVHIRRVLLQSSSGSSVAFGSEMS-----G-GISNVQV---------EKIHLYDSLNGIEFRTTKGRGGYIKQIVISD 100 (223)
Q Consensus 36 ~~NI~I~nc~~~~~~~~gi~IGSe~~-----g-~v~NI~v---------~n~~i~~~~~gi~Ikt~~g~gg~v~nI~~~n 100 (223)
+++++|+||.+.....+|+.+..... . ..+++.+ .|+.+.....|+...+ ++++++|
T Consensus 120 ~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~i~n 191 (225)
T PF12708_consen 120 SQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIFNGGDNGIILGN--------NNITISN 191 (225)
T ss_dssp EEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEEESSSCSEECEE--------EEEEEEC
T ss_pred CCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccccCCCceeEeec--------ceEEEEe
Confidence 67888888888754466777662211 1 1223333 3333333333421111 6888888
Q ss_pred EEEEe-cCeeeEEeee
Q 038330 101 AELYN-INVAFGACGN 115 (223)
Q Consensus 101 i~~~~-~~~~i~i~~~ 115 (223)
+.+++ ...+|.+...
T Consensus 192 ~~~~~~~~~gi~i~~~ 207 (225)
T PF12708_consen 192 NTFEGNCGNGINIEGG 207 (225)
T ss_dssp EEEESSSSESEEEEEC
T ss_pred EEECCccceeEEEECC
Confidence 88877 5567777654
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.06 E-value=0.0032 Score=48.55 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=63.8
Q ss_pred eecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeee
Q 038330 36 TTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGN 115 (223)
Q Consensus 36 ~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~ 115 (223)
..+++|+||++.....+||.+.... .++|+||++.+...|+.+... .+++++++++.+...++.+.
T Consensus 8 ~~~~~i~~~~i~~~~~~gi~~~~~~-----~~~i~n~~i~~~~~gi~~~~~-------~~~~i~~~~~~~~~~~i~~~-- 73 (158)
T PF13229_consen 8 GSNVTIRNCTISNNGGDGIHVSGSS-----NITIENCTISNGGYGIYVSGG-------SNVTISNNTISDNGSGIYVS-- 73 (158)
T ss_dssp CEC-EEESEEEESSSSECEEE-SSC-----ESEEES-EEESSTTSEEEECC-------ES-EEES-EEES-SEEEECC--
T ss_pred CcCeEEeeeEEEeCCCeEEEEEcCC-----CeEEECeEEECCCcEEEEecC-------CCeEEECeEEEEccceEEEE--
Confidence 5789999999997447899997632 378888888887788888643 67888888888777444332
Q ss_pred cCCCCCCCCCCCCCCcEEEEEEEEEEEeccce-eEEEEecCCCCEEeEEEEeEEEEecCC
Q 038330 116 CGSHPDDDFDPDALPAIDQITFKDIIGTNITI-AGNFTGIQEAPFANICLSNISLLINPG 174 (223)
Q Consensus 116 y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~-~~~i~g~~~~~i~nI~f~NV~i~~~~~ 174 (223)
.-.++++++.++..... ++.+.. +..+++|++-++....+
T Consensus 74 ---------------~~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~ 114 (158)
T PF13229_consen 74 ---------------GSSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGG 114 (158)
T ss_dssp ---------------S-CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTT
T ss_pred ---------------ecCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcc
Confidence 12234445555544442 444442 35678888888888663
No 26
>smart00656 Amb_all Amb_all domain.
Probab=96.83 E-value=0.013 Score=48.34 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=46.9
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecC---------CCCeEEEccCCCCCEEEEEEEee
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS---------SGSSVAFGSEMSGGISNVQVEKI 72 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~---------~~~gi~IGSe~~g~v~NI~v~n~ 72 (223)
++||.|+|..|+..++. ..++.|++.+. .++||.|..|++..+ .+..+.++ ....+|++++|
T Consensus 39 ~~NVIirnl~i~~~~~~----~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~----~~s~~vTvs~~ 109 (190)
T smart00656 39 VSNVIIRNLTIHDPKPV----YGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIK----NGSTYVTISNN 109 (190)
T ss_pred cceEEEeCCEEECCccC----CCCCCCEEEEe-CCCeEEEEccEeEcceeccCCCCCCCccEEEC----cccccEEEECc
Confidence 45777777777654221 00122333221 256777777777642 12223332 23567777777
Q ss_pred EEeCCCceEEEEEecCC-CceEEEEEEEeEEEEe
Q 038330 73 HLYDSLNGIEFRTTKGR-GGYIKQIVISDAELYN 105 (223)
Q Consensus 73 ~i~~~~~gi~Ikt~~g~-gg~v~nI~~~ni~~~~ 105 (223)
.|.+...+.-|...... .....+|||.+..+.+
T Consensus 110 ~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~ 143 (190)
T smart00656 110 YFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN 143 (190)
T ss_pred eEecCCEEEEEccCCCccccccceEEEECcEEcC
Confidence 77666666666543211 1113355555555543
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.75 E-value=0.042 Score=46.22 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=55.3
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
++++.|++..+....|+|.+.. +.+++|+++++... ..||.+.. .++++++++++.+...||
T Consensus 21 ~~~~~i~~n~i~~~~~gi~~~~------------s~~~~I~~n~i~~~-~~GI~~~~-----s~~~~i~~n~i~~n~~Gi 82 (236)
T PF05048_consen 21 SSNNSIENNTISNSRDGIYVEN------------SDNNTISNNTISNN-RYGIHLMG-----SSNNTIENNTISNNGYGI 82 (236)
T ss_pred CCCCEEEcCEEEeCCCEEEEEE------------cCCeEEEeeEEECC-CeEEEEEc-----cCCCEEEeEEEEccCCCE
Confidence 3566777778877777775443 57888888888865 67777754 334777777777766777
Q ss_pred EEEEecCCCceEEEEEEEeEEEEecCeeeEE
Q 038330 82 EFRTTKGRGGYIKQIVISDAELYNINVAFGA 112 (223)
Q Consensus 82 ~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i 112 (223)
.+.... +.++++.++.+...+|.+
T Consensus 83 ~l~~s~-------~~~I~~N~i~~n~~GI~l 106 (236)
T PF05048_consen 83 YLMGSS-------NNTISNNTISNNGYGIYL 106 (236)
T ss_pred EEEcCC-------CcEEECCEecCCCceEEE
Confidence 776442 225555555554445444
No 28
>smart00656 Amb_all Amb_all domain.
Probab=96.51 E-value=0.013 Score=48.41 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=50.2
Q ss_pred cccEEEEeeEEecC----------CceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCC---CCCEEEEE
Q 038330 2 SDNVCIEDCIIAMG----------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM---SGGISNVQ 68 (223)
Q Consensus 2 ~~nV~I~nc~i~~g----------DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~---~g~v~NI~ 68 (223)
++||+|++|.|..+ |..+.+|.+ +.+|+|++|.|... .-++-+|+.. .....+|+
T Consensus 68 ~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~-----------s~~vTvs~~~f~~h-~~~~liG~~d~~~~~~~~~vT 135 (190)
T smart00656 68 SSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNG-----------STYVTISNNYFHNH-WKVMLLGHSDSDTDDGKMRVT 135 (190)
T ss_pred CCeEEEEccEeEcceeccCCCCCCCccEEECcc-----------cccEEEECceEecC-CEEEEEccCCCccccccceEE
Confidence 68999999999986 555566654 79999999999855 6788888742 23456899
Q ss_pred EEeeEEeCC
Q 038330 69 VEKIHLYDS 77 (223)
Q Consensus 69 v~n~~i~~~ 77 (223)
+.++.+.++
T Consensus 136 ~h~N~~~~~ 144 (190)
T smart00656 136 IAHNYFGNL 144 (190)
T ss_pred EECcEEcCc
Confidence 999988774
No 29
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.49 E-value=0.0092 Score=49.57 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=50.9
Q ss_pred cccEEEEeeEEec----------------CCceEEeccCCCcCCccCCCceecEEEEeEEEecC--------CCCeEEEc
Q 038330 2 SDNVCIEDCIIAM----------------GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSS--------SGSSVAFG 57 (223)
Q Consensus 2 ~~nV~I~nc~i~~----------------gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~--------~~~gi~IG 57 (223)
++||.|+|..|+. +.|+|.+.. ++||.|..|++... .+..+.++
T Consensus 45 ~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~------------~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~ 112 (200)
T PF00544_consen 45 ASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDN------------SSNVWIDHCSFSWGNFECNSDSSDGLIDIK 112 (200)
T ss_dssp CEEEEEES-EEECEEEECSTEEETTEEECS--SEEEES------------TEEEEEES-EEEETTS-GGGSSSSSSEEEE
T ss_pred CCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEe------------cccEEEeccEEeccccccccccCCceEEEE
Confidence 5678888888876 335555552 56888888888765 44556654
Q ss_pred cCCCCCEEEEEEEeeEEeCCCceEEEEEecC---CCceEEEEEEEeEEEEec
Q 038330 58 SEMSGGISNVQVEKIHLYDSLNGIEFRTTKG---RGGYIKQIVISDAELYNI 106 (223)
Q Consensus 58 Se~~g~v~NI~v~n~~i~~~~~gi~Ikt~~g---~gg~v~nI~~~ni~~~~~ 106 (223)
. ...+|++++|.|.+...+..++..+. ..+ .+|||.+....++
T Consensus 113 ~----~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~--~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 113 K----GSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG--LRVTFHHNYFANT 158 (200)
T ss_dssp S----STEEEEEES-EEEEEEETCEESSCTTCGGGTT--EEEEEES-EEEEE
T ss_pred e----CCceEEEEchhccccccccccCCCCCccccCC--ceEEEEeEEECch
Confidence 3 45788888888877655555544311 113 6777777666654
No 30
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.035 Score=48.81 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=57.7
Q ss_pred cccEEEEeeEEecC------CceEEeccCCCcCCccCCCceecEEEEeEEEecCC-------CCe-EEEccCCCCCEEEE
Q 038330 2 SDNVCIEDCIIAMG------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSS-------GSS-VAFGSEMSGGISNV 67 (223)
Q Consensus 2 ~~nV~I~nc~i~~g------DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~-------~~g-i~IGSe~~g~v~NI 67 (223)
.+||.|+|..|.-- +|+|.|-- +.+||.|.+|+|..+. .+| +.|+ .+...|
T Consensus 124 a~NVIirNltf~~~~~~d~~~D~Isi~~-----------~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik----~~AnyI 188 (345)
T COG3866 124 AGNVIIRNLTFEGFYQGDPNYDAISIYD-----------DGHNIWIDHNTFSGGSYNASGSHGDGLVDIK----KDANYI 188 (345)
T ss_pred CCcEEEEeeEEEeeccCCCCCCcEEecc-----------CCeEEEEEeeEeccccccccccCCCccEEec----cCCcEE
Confidence 46888888887652 36666631 2578888888887520 112 3333 356788
Q ss_pred EEEeeEEeCCCceEEEEEecCC--CceEEEEEEEeEEEEec
Q 038330 68 QVEKIHLYDSLNGIEFRTTKGR--GGYIKQIVISDAELYNI 106 (223)
Q Consensus 68 ~v~n~~i~~~~~gi~Ikt~~g~--gg~v~nI~~~ni~~~~~ 106 (223)
+|+++.+++.+.++-+...+.. -+.-.+|||.+...++.
T Consensus 189 TiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 189 TISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred EEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 8888888888877777654321 12336788887777764
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.14 E-value=0.061 Score=45.21 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=65.6
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
+.+++|+++.|.....+|.+.. +++++|+++++... ..||.+... .+.++++.++.+...||
T Consensus 43 s~~~~I~~n~i~~~~~GI~~~~------------s~~~~i~~n~i~~n-~~Gi~l~~s-----~~~~I~~N~i~~n~~GI 104 (236)
T PF05048_consen 43 SDNNTISNNTISNNRYGIHLMG------------SSNNTIENNTISNN-GYGIYLMGS-----SNNTISNNTISNNGYGI 104 (236)
T ss_pred cCCeEEEeeEEECCCeEEEEEc------------cCCCEEEeEEEEcc-CCCEEEEcC-----CCcEEECCEecCCCceE
Confidence 5789999999998877887765 57799999999965 688888642 24588888888877788
Q ss_pred EEEEecCCCceEEEEEEEeEEEEecCeeeEEee
Q 038330 82 EFRTTKGRGGYIKQIVISDAELYNINVAFGACG 114 (223)
Q Consensus 82 ~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~ 114 (223)
.+.... +.++++-++.+...+|++..
T Consensus 105 ~l~~s~-------~~~I~~N~i~~~~~GI~l~~ 130 (236)
T PF05048_consen 105 YLYGSS-------NNTISNNTISNNGYGIYLSS 130 (236)
T ss_pred EEeeCC-------ceEEECcEEeCCCEEEEEEe
Confidence 876432 35566666666667777654
No 32
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.03 E-value=0.48 Score=38.71 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=60.5
Q ss_pred EEEEeEEEecCCC-------CeEEEccCCCCCEEEEEEEeeEEeCC-CceEEEEEecC----CCceEEEEEEEe----EE
Q 038330 39 VHIRRVLLQSSSG-------SSVAFGSEMSGGISNVQVEKIHLYDS-LNGIEFRTTKG----RGGYIKQIVISD----AE 102 (223)
Q Consensus 39 I~I~nc~~~~~~~-------~gi~IGSe~~g~v~NI~v~n~~i~~~-~~gi~Ikt~~g----~gg~v~nI~~~n----i~ 102 (223)
+.|+|.++... . .++.+.+ .++++++||++.+. ..++.+..... ......++.+++ +.
T Consensus 94 ~~i~nl~i~~~-~~~~~~~~~~i~~~~-----~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (225)
T PF12708_consen 94 IQIRNLTIDGN-GIDPNNNNNGIRFNS-----SQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVI 167 (225)
T ss_dssp EEEEEEEEEET-CGCE-SCEEEEEETT-----EEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEE
T ss_pred EEEEeeEEEcc-cccCCCCceEEEEEe-----CCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEE
Confidence 55888888754 2 3455544 89999999999985 56788763211 112333555554 22
Q ss_pred EEecCeeeEEeeecCCCCCCCCCCCCC-CcEEEEEEEEEEEec-cceeEEEEecCCCCEEeEEEEe
Q 038330 103 LYNINVAFGACGNCGSHPDDDFDPDAL-PAIDQITFKDIIGTN-ITIAGNFTGIQEAPFANICLSN 166 (223)
Q Consensus 103 ~~~~~~~i~i~~~y~~~~~~~~~~~~~-~~i~nIt~~nI~~~~-~~~~~~i~g~~~~~i~nI~f~N 166 (223)
..+ +.+...+. +. -.-++++++|..... ...++.+.+.....+++++|+|
T Consensus 168 ~~~----~~~~~~~~----------g~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~ 219 (225)
T PF12708_consen 168 VNN----CIFNGGDN----------GIILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIEN 219 (225)
T ss_dssp EEC----EEEESSSC----------SEECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEES
T ss_pred ECC----ccccCCCc----------eeEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEEC
Confidence 111 11111100 10 012789999999887 5578989875543444444444
No 33
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.27 E-value=0.032 Score=46.33 Aligned_cols=63 Identities=24% Similarity=0.433 Sum_probs=45.9
Q ss_pred cccEEEEeeEEecC---------CceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCC----CCCEEEEE
Q 038330 2 SDNVCIEDCIIAMG---------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEM----SGGISNVQ 68 (223)
Q Consensus 2 ~~nV~I~nc~i~~g---------DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~----~g~v~NI~ 68 (223)
++||+|++|.+..+ |..+.+|.+ +.+|+|++|.|... ..+..+|+.. ..+ .+|+
T Consensus 83 ~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~-----------s~~vTiS~n~f~~~-~k~~l~G~~d~~~~~~~-~~vT 149 (200)
T PF00544_consen 83 SSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG-----------SDNVTISNNIFDNH-NKTMLIGSSDSNSTDRG-LRVT 149 (200)
T ss_dssp TEEEEEES-EEEETTS-GGGSSSSSSEEEESS-----------TEEEEEES-EEEEE-EETCEESSCTTCGGGTT-EEEE
T ss_pred cccEEEeccEEeccccccccccCCceEEEEeC-----------CceEEEEchhcccc-ccccccCCCCCccccCC-ceEE
Confidence 67999999999876 455666654 89999999999965 5667788752 234 8999
Q ss_pred EEeeEEeCC
Q 038330 69 VEKIHLYDS 77 (223)
Q Consensus 69 v~n~~i~~~ 77 (223)
+.++.+.++
T Consensus 150 ~hhN~f~~~ 158 (200)
T PF00544_consen 150 FHHNYFANT 158 (200)
T ss_dssp EES-EEEEE
T ss_pred EEeEEECch
Confidence 999988764
No 34
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=92.98 E-value=0.49 Score=41.81 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=50.5
Q ss_pred CcccEEEEeeEEec---------CCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCC----CCEEEE
Q 038330 1 SSDNVCIEDCIIAM---------GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS----GGISNV 67 (223)
Q Consensus 1 s~~nV~I~nc~i~~---------gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~----g~v~NI 67 (223)
.++|++|++|+|.. +|..+-||- .+..|+|+++.|... +-++-+|+... .+-.+|
T Consensus 152 ~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~-----------~AnyITiS~n~fhdh-~Kssl~G~sD~~~~~~~~~kv 219 (345)
T COG3866 152 DGHNIWIDHNTFSGGSYNASGSHGDGLVDIKK-----------DANYITISYNKFHDH-DKSSLLGSSDSSNYDDGKYKV 219 (345)
T ss_pred CCeEEEEEeeEeccccccccccCCCccEEecc-----------CCcEEEEEeeeeecC-CeeeeeccCCcccccCCceeE
Confidence 36899999999987 344445554 489999999999966 77888887542 466889
Q ss_pred EEEeeEEeCC
Q 038330 68 QVEKIHLYDS 77 (223)
Q Consensus 68 ~v~n~~i~~~ 77 (223)
++.++.|.+.
T Consensus 220 T~hhNyFkn~ 229 (345)
T COG3866 220 TIHHNYFKNL 229 (345)
T ss_pred EEeccccccc
Confidence 9999999875
No 35
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=92.49 E-value=5.5 Score=37.17 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=26.5
Q ss_pred cccEEEEeeEEecCCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEE
Q 038330 2 SDNVCIEDCIIAMGHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAF 56 (223)
Q Consensus 2 ~~nV~I~nc~i~~gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~I 56 (223)
.+||+|+++.|+...... .....+..+ ..+++++|+||++......||-+
T Consensus 114 A~nVTIsGLtIdGsG~dl----~~rdAgI~v-~~a~~v~Iedn~L~gsg~FGI~L 163 (455)
T TIGR03808 114 ADGIGLSGLTLDGGGIPL----PQRRGLIHC-QGGRDVRITDCEITGSGGNGIWL 163 (455)
T ss_pred CCCeEEEeeEEEeCCCcc----cCCCCEEEE-ccCCceEEEeeEEEcCCcceEEE
Confidence 357788888776532100 011112222 23778888888887431266666
No 36
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=92.43 E-value=5.6 Score=37.10 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=16.2
Q ss_pred CcccEEEEeeEEecCC-ceEEec
Q 038330 1 SSDNVCIEDCIIAMGH-DAISLK 22 (223)
Q Consensus 1 s~~nV~I~nc~i~~gD-D~Iaik 22 (223)
.|++++|+||.|...- -+|.+.
T Consensus 142 ~a~~v~Iedn~L~gsg~FGI~L~ 164 (455)
T TIGR03808 142 GGRDVRITDCEITGSGGNGIWLE 164 (455)
T ss_pred cCCceEEEeeEEEcCCcceEEEE
Confidence 3789999999998652 555554
No 37
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=91.03 E-value=2.3 Score=39.38 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=38.0
Q ss_pred eecEEEEeEEEecCCCCeEEEccCCC-------------------CCEEEEEEEeeEEeCCCceEEEEEecCCCceEEEE
Q 038330 36 TTDVHIRRVLLQSSSGSSVAFGSEMS-------------------GGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQI 96 (223)
Q Consensus 36 ~~NI~I~nc~~~~~~~~gi~IGSe~~-------------------g~v~NI~v~n~~i~~~~~gi~Ikt~~g~gg~v~nI 96 (223)
+-|+.++|.+.....-+|+.+|+... .-=.|=.++|+...++ .|+.+. ++|++++|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEeeE
Confidence 67889999988877788999988731 1123445566655554 355554 35778999988
Q ss_pred EEEeEEE
Q 038330 97 VISDAEL 103 (223)
Q Consensus 97 ~~~ni~~ 103 (223)
+.+++.-
T Consensus 341 ~~~d~~g 347 (549)
T PF09251_consen 341 TVQDCAG 347 (549)
T ss_dssp EEES-SS
T ss_pred EeecccC
Confidence 8877643
No 38
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=85.17 E-value=1.4 Score=38.87 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=13.9
Q ss_pred ceEEEEEEEeEEEEecCeeeEE
Q 038330 91 GYIKQIVISDAELYNINVAFGA 112 (223)
Q Consensus 91 g~v~nI~~~ni~~~~~~~~i~i 112 (223)
..|+|..+-||+-.++++-+++
T Consensus 243 q~vknfvvanitgs~crqlvhv 264 (464)
T PRK10123 243 QAVKNFVVANITGSDCRQLIHV 264 (464)
T ss_pred hhhhhEEEEeccCcChhheEEe
Confidence 4567777777776666655444
No 39
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=82.77 E-value=8.7 Score=35.18 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=19.0
Q ss_pred ecEEEEeEEEecCC-CCeEEEccCCCCCEEEEEEEeeEEeCCCceEEEEEe
Q 038330 37 TDVHIRRVLLQSSS-GSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTT 86 (223)
Q Consensus 37 ~NI~I~nc~~~~~~-~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~Ikt~ 86 (223)
.+|++.||.|.... .+|+-+=+ ..++++.+|.|.+- +|+.++.+
T Consensus 121 ~~VtF~ni~F~~~~~~~g~~f~~-----~t~~~~hgC~F~gf-~g~cl~~~ 165 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDTFSGVVFHA-----NTNTLFHGCSFFGF-HGTCLESW 165 (386)
T ss_pred eeeEEEEEEEecCCccceeEEEe-----cceEEEEeeEEecC-cceeEEEc
Confidence 45555555554331 23333322 23455555555543 34444443
No 40
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=81.22 E-value=19 Score=31.03 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=23.8
Q ss_pred cEEEEeEEEecCCCCeEEEccC-CCCCEEEEEEEeeEEeCCCceEEEE
Q 038330 38 DVHIRRVLLQSSSGSSVAFGSE-MSGGISNVQVEKIHLYDSLNGIEFR 84 (223)
Q Consensus 38 NI~I~nc~~~~~~~~gi~IGSe-~~g~v~NI~v~n~~i~~~~~gi~Ik 84 (223)
+.+|+||+|.....+||.+-.. ....+.++.|+...+.....||.+-
T Consensus 123 ~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~ 170 (246)
T PF07602_consen 123 SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISIS 170 (246)
T ss_pred CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEE
Confidence 5566666665422445544222 1345555555555555555555554
No 41
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=80.55 E-value=8.5 Score=35.72 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=47.9
Q ss_pred ccEEEEeeE-EecCCceEEeccCCC--cCCc----------cCCCceecEEEEeEEEecCCCCeEEEccCCC-CCEEEEE
Q 038330 3 DNVCIEDCI-IAMGHDAISLKSGWD--EYGI----------AYGRPTTDVHIRRVLLQSSSGSSVAFGSEMS-GGISNVQ 68 (223)
Q Consensus 3 ~nV~I~nc~-i~~gDD~Iaiksg~~--~~g~----------~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~-g~v~NI~ 68 (223)
-|..++|.. |.+--|++-+.+.++ +.-. .+..--.|-.|+|...+ + +.|+.+|-.++ +.++||+
T Consensus 264 YnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~-~-~lGVG~~~DG~~~yvsni~ 341 (549)
T PF09251_consen 264 YNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVR-G-SLGVGIGMDGKGGYVSNIT 341 (549)
T ss_dssp BS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEE-S--SSESCEEECCS-EEEEEE
T ss_pred eeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhhee-c-cceeeeeecCCCceEeeEE
Confidence 356677765 455688888876532 1111 11122357788999888 5 88888887664 6799999
Q ss_pred EEeeEEeCCCceEEEEEecCCCceEEEEEEE
Q 038330 69 VEKIHLYDSLNGIEFRTTKGRGGYIKQIVIS 99 (223)
Q Consensus 69 v~n~~i~~~~~gi~Ikt~~g~gg~v~nI~~~ 99 (223)
+++|. ..|+.+++. +-.+.||++-
T Consensus 342 ~~d~~----g~G~~~~~~---~~~ftNitvI 365 (549)
T PF09251_consen 342 VQDCA----GAGIFIRGT---NKVFTNITVI 365 (549)
T ss_dssp EES-S----SESEEEECC---S-EEEEEEEE
T ss_pred eeccc----CCceEEeec---CCceeeeEEE
Confidence 99884 457777755 3445555543
No 42
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=68.55 E-value=93 Score=28.61 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=29.4
Q ss_pred cEEEEeeEEecCC--ceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceE
Q 038330 4 NVCIEDCIIAMGH--DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGI 81 (223)
Q Consensus 4 nV~I~nc~i~~gD--D~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi 81 (223)
+|++.||.|...| -++.+-+ .+++++.+|.|. + -+|.++-+-.. ..++.|+|.+...|+
T Consensus 122 ~VtF~ni~F~~~~~~~g~~f~~------------~t~~~~hgC~F~-g-f~g~cl~~~~~-----~~VrGC~F~~C~~gi 182 (386)
T PF01696_consen 122 GVTFVNIRFEGRDTFSGVVFHA------------NTNTLFHGCSFF-G-FHGTCLESWAG-----GEVRGCTFYGCWKGI 182 (386)
T ss_pred eeEEEEEEEecCCccceeEEEe------------cceEEEEeeEEe-c-CcceeEEEcCC-----cEEeeeEEEEEEEEe
Confidence 4666666666433 1333332 466666777766 3 55555544322 234444444443343
No 43
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=65.94 E-value=9.3 Score=19.43 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=8.4
Q ss_pred cEEEEeeEEecCCc-eEEec
Q 038330 4 NVCIEDCIIAMGHD-AISLK 22 (223)
Q Consensus 4 nV~I~nc~i~~gDD-~Iaik 22 (223)
+++|++|.|..... +|.++
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 44555555544322 44443
No 44
>PLN02480 Probable pectinesterase
Probab=63.06 E-value=37 Score=30.66 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=22.5
Q ss_pred EEEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
....|.|.++++.. . ...|.|=.+-..+.|.|..+..
T Consensus 240 ~GfvF~~C~i~g~g-~-~yLGRPW~~ya~vVf~~t~l~~ 276 (343)
T PLN02480 240 SGFVFIKGKVYGIG-E-VYLGRAKGAYSRVIFAKTYLSK 276 (343)
T ss_pred CEEEEECCEEcccC-c-eeeecCCCCcceEEEEecccCC
Confidence 35677777777643 2 2345555566677777766654
No 45
>PLN02773 pectinesterase
Probab=57.34 E-value=1.4e+02 Score=26.61 Aligned_cols=133 Identities=7% Similarity=0.030 Sum_probs=76.7
Q ss_pred cccEEEEeeEEecC-----CceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeC
Q 038330 2 SDNVCIEDCIIAMG-----HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD 76 (223)
Q Consensus 2 ~~nV~I~nc~i~~g-----DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~ 76 (223)
++++..+|.+|.+. .-++|+... ...+.+.||.|... -+-|-... -.-+|+||.|.+
T Consensus 101 a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-----------gDr~~f~~c~~~G~-QDTL~~~~------gr~yf~~c~IeG 162 (317)
T PLN02773 101 GEDFIAENITFENSAPEGSGQAVAIRVT-----------ADRCAFYNCRFLGW-QDTLYLHY------GKQYLRDCYIEG 162 (317)
T ss_pred CCCeEEEeeEEEeCCCCCCCcEEEEEec-----------CccEEEEccEeecc-cceeEeCC------CCEEEEeeEEee
Confidence 35777888888764 246777654 57899999999954 66666542 257888888887
Q ss_pred CCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccce-eEEEEecC
Q 038330 77 SLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITI-AGNFTGIQ 155 (223)
Q Consensus 77 ~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~-~~~i~g~~ 155 (223)
+-.=|. + . -...|++|++.....+ .|..... ..+. .=....|.|.+++.... .....|.+
T Consensus 163 ~VDFIF-G-----~---g~a~Fe~c~i~s~~~g-~ITA~~r------~~~~---~~~GfvF~~c~it~~~~~~~~yLGRp 223 (317)
T PLN02773 163 SVDFIF-G-----N---STALLEHCHIHCKSAG-FITAQSR------KSSQ---ESTGYVFLRCVITGNGGSGYMYLGRP 223 (317)
T ss_pred cccEEe-e-----c---cEEEEEeeEEEEccCc-EEECCCC------CCCC---CCceEEEEccEEecCCCCcceeecCC
Confidence 532222 1 1 1356777777644322 1211100 0010 11246777777776542 22235555
Q ss_pred CCCEEeEEEEeEEEEe
Q 038330 156 EAPFANICLSNISLLI 171 (223)
Q Consensus 156 ~~~i~nI~f~NV~i~~ 171 (223)
=.+-..+.|.|..+..
T Consensus 224 W~~~a~vVf~~t~l~~ 239 (317)
T PLN02773 224 WGPFGRVVFAYTYMDA 239 (317)
T ss_pred CCCCceEEEEecccCC
Confidence 5556667777766655
No 46
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=56.84 E-value=13 Score=33.00 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=24.2
Q ss_pred cEEEEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEe
Q 038330 131 AIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 131 ~i~nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
.++|..+-||++.....-+.++--.-.-++||.-+||+-..
T Consensus 244 ~vknfvvanitgs~crqlvhvengkhfvirnvkaknitpdf 284 (464)
T PRK10123 244 AVKNFVVANITGSDCRQLIHVENGKHFVIRNIKAKNITPDF 284 (464)
T ss_pred hhhhEEEEeccCcChhheEEecCCcEEEEEeeeccccCCCc
Confidence 57777777777777665555443222345666666665444
No 47
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=52.18 E-value=82 Score=29.35 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=24.7
Q ss_pred ceEEEEEEEeEEEEecCeeeE-EeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEE
Q 038330 91 GYIKQIVISDAELYNINVAFG-ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFT 152 (223)
Q Consensus 91 g~v~nI~~~ni~~~~~~~~i~-i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~ 152 (223)
=.|.|=+|++++-.....++. +...... | ...-.+++|+++.|=+.-....++.+-
T Consensus 273 H~I~nNY~~gl~g~~~~~~~~v~ng~p~s-~-----ln~y~qv~nv~I~~NT~In~~~~i~~g 329 (425)
T PF14592_consen 273 HTIYNNYFEGLTGTRFRGALAVMNGVPNS-P-----LNRYDQVKNVLIANNTFINCKSPIHFG 329 (425)
T ss_dssp -EEES-EEEESSB-TTTTSEE-EEE--BS-T-----TSTT---BSEEEES-EEES-SEEEESS
T ss_pred cEEEcceeeccccceeecceeeccCCCCC-C-----cccccccceeEEecceEEccCCceEEc
Confidence 356666677766554445555 3332211 1 111226778887777776665555543
No 48
>PLN02773 pectinesterase
Probab=45.72 E-value=2.2e+02 Score=25.40 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=58.5
Q ss_pred ecEEEEeEEEecC----CCCeEEEccCCCCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEE
Q 038330 37 TDVHIRRVLLQSS----SGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGA 112 (223)
Q Consensus 37 ~NI~I~nc~~~~~----~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i 112 (223)
.++.++|++|.+. .+.++++-.. -..+.|.||.|.+...-|..+. -.-+|+|+.+++.---|
T Consensus 102 ~~f~a~nlT~~Nt~~~~~gQAvAl~v~----gDr~~f~~c~~~G~QDTL~~~~--------gr~yf~~c~IeG~VDFI-- 167 (317)
T PLN02773 102 EDFIAENITFENSAPEGSGQAVAIRVT----ADRCAFYNCRFLGWQDTLYLHY--------GKQYLRDCYIEGSVDFI-- 167 (317)
T ss_pred CCeEEEeeEEEeCCCCCCCcEEEEEec----CccEEEEccEeecccceeEeCC--------CCEEEEeeEEeecccEE--
Confidence 3455555555432 1345555432 2478999999999877777542 14688999998632111
Q ss_pred eeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEec--CC-CCEEeEEEEeEEEEecC
Q 038330 113 CGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGI--QE-APFANICLSNISLLINP 173 (223)
Q Consensus 113 ~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~--~~-~~i~nI~f~NV~i~~~~ 173 (223)
|+. +...+++-+|.. .. ..+|... .. ..-.++.|.|.+|++..
T Consensus 168 ---FG~---------g~a~Fe~c~i~s-----~~-~g~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 168 ---FGN---------STALLEHCHIHC-----KS-AGFITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ---eec---------cEEEEEeeEEEE-----cc-CcEEECCCCCCCCCCceEEEEccEEecCC
Confidence 221 112455555432 22 2334332 11 22358999999999865
No 49
>PLN02634 probable pectinesterase
Probab=43.97 E-value=2.3e+02 Score=25.80 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=71.4
Q ss_pred ccEEEEeeEEecC----------CceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEee
Q 038330 3 DNVCIEDCIIAMG----------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKI 72 (223)
Q Consensus 3 ~nV~I~nc~i~~g----------DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~ 72 (223)
.+...+|..|.+. .-+||+... .....+.||.|... -+-|-... -.-+|+||
T Consensus 149 ~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~-----------gDra~f~~C~f~G~-QDTL~~~~------gR~yf~~C 210 (359)
T PLN02634 149 NYFTARNISFKNTAPAPMPGMQGWQAVAFRIS-----------GDKAFFFGCGFYGA-QDTLCDDA------GRHYFKEC 210 (359)
T ss_pred CCeEEEeCeEEeCCccCCCCCCCCceEEEEec-----------CCcEEEEEeEEecc-cceeeeCC------CCEEEEee
Confidence 3455666666553 245666653 57899999999954 66665432 26788888
Q ss_pred EEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCee-eEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEE
Q 038330 73 HLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVA-FGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNF 151 (223)
Q Consensus 73 ~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~-i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i 151 (223)
.|.++-.=|. |. | ...|+|+++...... =.|... ++..+. .-....|.|.++++.+ .+ .
T Consensus 211 yIeG~VDFIF-----G~-g---~a~Fe~C~I~s~~~~~g~ITA~------~R~~~~---~~~GfvF~~C~vtg~g-~~-y 270 (359)
T PLN02634 211 YIEGSIDFIF-----GN-G---RSMYKDCELHSIASRFGSIAAH------GRTCPE---EKTGFAFVGCRVTGTG-PL-Y 270 (359)
T ss_pred EEcccccEEc-----CC-c---eEEEeccEEEEecCCCcEEEeC------CCCCCC---CCcEEEEEcCEEcCCc-ce-E
Confidence 8887532221 11 1 345777777653221 111111 000111 2245678888877754 22 2
Q ss_pred EecCCCCEEeEEEEeEEEEe
Q 038330 152 TGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 152 ~g~~~~~i~nI~f~NV~i~~ 171 (223)
.|.+=.+-..+.|.+..+..
T Consensus 271 LGRPW~~yarvVf~~t~l~~ 290 (359)
T PLN02634 271 VGRAMGQYSRIVYAYTYFDA 290 (359)
T ss_pred ecCCCCCcceEEEEecccCC
Confidence 45444455666676665554
No 50
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=43.38 E-value=1e+02 Score=26.54 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=47.8
Q ss_pred cEEEEeeEEec-CCceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceEE
Q 038330 4 NVCIEDCIIAM-GHDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIE 82 (223)
Q Consensus 4 nV~I~nc~i~~-gDD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~ 82 (223)
+.+|+||+|.. +.++|.+.... ..-...+++|++..+... ..||++-....+ ++| .++|..+.+...||.
T Consensus 123 ~~tI~Nntf~~~~~~GI~v~g~~------~~~~i~~~vI~GN~~~~~-~~Gi~i~~~~~~-~~n-~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 123 SPTIANNTFTNNGREGIFVTGTS------ANPGINGNVISGNSIYFN-KTGISISDNAAP-VEN-KIENNIIENNNIGIV 193 (246)
T ss_pred CcEEEeeEEECCccccEEEEeee------cCCcccceEeecceEEec-CcCeEEEcccCC-ccc-eeeccEEEeCCcCeE
Confidence 67899999886 46677664321 011367888999999866 889998654444 444 447777776656776
Q ss_pred EE
Q 038330 83 FR 84 (223)
Q Consensus 83 Ik 84 (223)
+-
T Consensus 194 ~~ 195 (246)
T PF07602_consen 194 AI 195 (246)
T ss_pred ee
Confidence 53
No 51
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=42.18 E-value=41 Score=20.18 Aligned_cols=19 Identities=0% Similarity=0.023 Sum_probs=9.6
Q ss_pred cEEEEeEEEecCCCCeEEEc
Q 038330 38 DVHIRRVLLQSSSGSSVAFG 57 (223)
Q Consensus 38 NI~I~nc~~~~~~~~gi~IG 57 (223)
+.+|+++++... ..||.+-
T Consensus 9 ~~~i~~N~i~~~-~~GI~~~ 27 (44)
T TIGR03804 9 NNTLENNTASNN-SYGIYLT 27 (44)
T ss_pred CCEEECcEEeCC-CCEEEEE
Confidence 334555555543 4455553
No 52
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=41.00 E-value=3.7e+02 Score=26.67 Aligned_cols=13 Identities=0% Similarity=-0.123 Sum_probs=8.9
Q ss_pred EEEEEEEEEEecc
Q 038330 133 DQITFKDIIGTNI 145 (223)
Q Consensus 133 ~nIt~~nI~~~~~ 145 (223)
..+.|.|.+++..
T Consensus 440 tGfvf~~C~i~~~ 452 (670)
T PLN02217 440 TGFVLQGCTIVGE 452 (670)
T ss_pred ceEEEEeeEEecC
Confidence 4577777777764
No 53
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=40.57 E-value=1.6e+02 Score=27.54 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=20.1
Q ss_pred EEEEEeeEEeCCCceEEEEEecCCC----ceEEEEEEEeEEEEe
Q 038330 66 NVQVEKIHLYDSLNGIEFRTTKGRG----GYIKQIVISDAELYN 105 (223)
Q Consensus 66 NI~v~n~~i~~~~~gi~Ikt~~g~g----g~v~nI~~~ni~~~~ 105 (223)
.+.|.||.|.+...=|...+..... ...-.-+|+|+.|++
T Consensus 239 ra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 239 KVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred cEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 6667777777665555543221100 122245566666654
No 54
>PLN02682 pectinesterase family protein
Probab=36.65 E-value=3.4e+02 Score=24.87 Aligned_cols=132 Identities=9% Similarity=-0.021 Sum_probs=76.9
Q ss_pred ccEEEEeeEEecCC----------ceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEee
Q 038330 3 DNVCIEDCIIAMGH----------DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKI 72 (223)
Q Consensus 3 ~nV~I~nc~i~~gD----------D~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~ 72 (223)
.++..+|..|.+.- -+||+... .....+.||.|... -+-|--.. -.-+++||
T Consensus 163 ~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~-----------gDr~~fy~C~f~G~-QDTLy~~~------gRqyf~~C 224 (369)
T PLN02682 163 PYFIAKNITFKNTAPVPPPGALGKQAVALRIS-----------ADTAAFYGCKFLGA-QDTLYDHL------GRHYFKDC 224 (369)
T ss_pred CCeEEEeeEEEcccccCCCCCCcccEEEEEec-----------CCcEEEEcceEecc-ccceEECC------CCEEEEee
Confidence 46667777776632 26777653 67999999999954 56555432 25789999
Q ss_pred EEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCee-eEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEE
Q 038330 73 HLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVA-FGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNF 151 (223)
Q Consensus 73 ~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~-i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i 151 (223)
.|.++-.=|. |. -...|+++++...... -.|...- +..+. .-....|.|.+++..+ .+ .
T Consensus 225 ~IeG~VDFIF-----G~----g~a~Fe~C~I~s~~~~~G~ITA~~------r~~~~---~~~GfvF~~C~itg~g-~~-y 284 (369)
T PLN02682 225 YIEGSVDFIF-----GN----GLSLYEGCHLHAIARNFGALTAQK------RQSVL---EDTGFSFVNCKVTGSG-AL-Y 284 (369)
T ss_pred EEcccccEEe-----cC----ceEEEEccEEEEecCCCeEEecCC------CCCCC---CCceEEEEeeEecCCC-ce-E
Confidence 9988632221 11 2456777777643221 1122110 00111 2246778888888764 22 3
Q ss_pred EecCCCCEEeEEEEeEEEEec
Q 038330 152 TGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 152 ~g~~~~~i~nI~f~NV~i~~~ 172 (223)
.|.+=.+-..+.|.|..+...
T Consensus 285 LGRpW~~yarvVf~~t~m~~~ 305 (369)
T PLN02682 285 LGRAWGTFSRVVFAYTYMDNI 305 (369)
T ss_pred eecCCCCcceEEEEeccCCCc
Confidence 465555667777888776654
No 55
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=35.94 E-value=2.7e+02 Score=23.51 Aligned_cols=123 Identities=8% Similarity=0.060 Sum_probs=55.4
Q ss_pred cEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeeecC
Q 038330 38 DVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGNCG 117 (223)
Q Consensus 38 NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~y~ 117 (223)
+-+|+|+....-..++++|+.... .++|.+.-..+.. =.+-...++ | .++++|+++++.... +...
T Consensus 83 ~Ctl~NVwwedVcEDA~T~kg~~~----~~~I~ggga~~A~--DKV~Q~Ng~-G---tv~I~nF~a~d~GKl--~RSC-- 148 (215)
T PF03211_consen 83 SCTLENVWWEDVCEDAATFKGDGG----TVTIIGGGARNAS--DKVFQHNGG-G---TVTIKNFYAEDFGKL--YRSC-- 148 (215)
T ss_dssp CEEEEEEEESS-SSESEEEESSEE----EEEEESTEEEEEE--EEEEEE-SS-E---EEEEEEEEEEEEEEE--EEE---
T ss_pred CEEEEEEEecccceeeeEEcCCCc----eEEEeCCcccCCC--ccEEEecCc-e---eEEEEeEEEcCCCEE--EEeC--
Confidence 567778777644468999987543 3333332222210 011112222 2 466777776654321 1211
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEecCCCCCCceEEeeecCC
Q 038330 118 SHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNIHGSS 188 (223)
Q Consensus 118 ~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~~~~~~~~~~c~nv~g~~ 188 (223)
..+ .... +.=+.|.++++.......-+-|.-..+.. .+++++.+... -.|....+..
T Consensus 149 --GnC--~~~~-~~~r~v~v~~~~~~~~~~~~giN~N~gD~---ati~~~~~~~~------~vC~~y~G~~ 205 (215)
T PF03211_consen 149 --GNC--SNNG-GPRRHVVVNNVVAGPGNSLVGINRNYGDT---ATISNSCIKGK------KVCQEYKGVD 205 (215)
T ss_dssp --TTE--TS-----EEEEEEEEEEEEEEEEEEEEEEGGTTT---EEEEEEEEEEE------CCEEEEESCB
T ss_pred --CCC--CCCC-CcceEEEEeeEEecCCcEEEEEECCCCCe---EEEEEEEecCC------ccCcceEecC
Confidence 111 1111 13466777777766555444555443332 12444444431 3366666544
No 56
>PLN02480 Probable pectinesterase
Probab=35.84 E-value=3.3e+02 Score=24.59 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=29.4
Q ss_pred cccEEEEeeEEecC----------CceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEE
Q 038330 2 SDNVCIEDCIIAMG----------HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVA 55 (223)
Q Consensus 2 ~~nV~I~nc~i~~g----------DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~ 55 (223)
..+++++|++|.+. +-+||+... ...+.++||.|... -+-|-
T Consensus 131 a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~-----------gDra~f~~c~f~G~-QDTLy 182 (343)
T PLN02480 131 APHFVAFGISIRNDAPTGMAFTSENQSVAAFVG-----------ADKVAFYHCAFYST-HNTLF 182 (343)
T ss_pred CCCEEEEeeEEEecCCCCCCCCCCCceEEEEec-----------CCcEEEEeeEEecc-cceeE
Confidence 35788888888874 246666543 57899999999853 55554
No 57
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=35.04 E-value=58 Score=28.71 Aligned_cols=17 Identities=0% Similarity=-0.042 Sum_probs=8.4
Q ss_pred EEEEEeeEEeCCCceEE
Q 038330 66 NVQVEKIHLYDSLNGIE 82 (223)
Q Consensus 66 NI~v~n~~i~~~~~gi~ 82 (223)
++.|.||.|.+...-|.
T Consensus 116 ~~~f~~c~~~g~QDTL~ 132 (298)
T PF01095_consen 116 RAAFYNCRFLGYQDTLY 132 (298)
T ss_dssp SEEEEEEEEE-STT-EE
T ss_pred cEEEEEeEEccccceee
Confidence 45566666665544443
No 58
>PLN02432 putative pectinesterase
Probab=34.37 E-value=1.9e+02 Score=25.57 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=21.9
Q ss_pred EEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEe
Q 038330 134 QITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 134 nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
...|.|.+++..+ -...|.|=.+-..+.|.|..+..
T Consensus 194 Gfvf~~c~itg~g--~~yLGRpW~~~srvvf~~t~l~~ 229 (293)
T PLN02432 194 GFTFLGCKLTGAG--TTYLGRPWGPYSRVVFALSYMSS 229 (293)
T ss_pred eEEEEeeEEcccc--hhhccCCCCCccEEEEEecccCC
Confidence 5677777777543 22345555566667777766654
No 59
>PLN02497 probable pectinesterase
Probab=34.08 E-value=1.8e+02 Score=26.14 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=22.8
Q ss_pred EEEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEec
Q 038330 133 DQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~~ 172 (223)
....|.|.+++..+ -...|.|=.+-..+.|.|..+...
T Consensus 227 ~GfvF~~C~itg~g--~~yLGRPW~~ysrvvf~~t~m~~~ 264 (331)
T PLN02497 227 NGFVFKNCLVYGTG--SAYLGRPWRGYSRVLFYNSNLTDV 264 (331)
T ss_pred ceEEEEccEEccCC--CEEEeCCCCCCceEEEEecccCCe
Confidence 35677777777643 233555555566677777666553
No 60
>PLN02176 putative pectinesterase
Probab=33.31 E-value=2.1e+02 Score=25.86 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=21.5
Q ss_pred EEEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
....|.|.+++... -...|.|=.+-..+.|.|..+..
T Consensus 234 ~GfvF~~C~itg~g--~~yLGRPW~~yarvVf~~t~m~~ 270 (340)
T PLN02176 234 GGFVFKDCTVTGVG--KALLGRAWGSYARVIFYRSRFSD 270 (340)
T ss_pred cEEEEECCEEccCc--ceeeecCCCCCceEEEEecCcCC
Confidence 35677777777643 23345555555666666665554
No 61
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=29.64 E-value=5.2e+02 Score=24.91 Aligned_cols=111 Identities=7% Similarity=-0.012 Sum_probs=0.0
Q ss_pred eecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCeeeEEeee
Q 038330 36 TTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFGACGN 115 (223)
Q Consensus 36 ~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~i~~~ 115 (223)
.+||+|+|-.-... +-++++-.... ...|.||.|.+...-|.-.+. .-+|+||++++.--=|+=...
T Consensus 317 a~nitf~Ntag~~~-~QAVALrv~gD----r~~fy~C~f~GyQDTLy~~~~--------Rqyy~~C~I~GtVDFIFG~a~ 383 (529)
T PLN02170 317 ARDITFVNSAGPNS-EQAVALRVGSD----KSVVYRCSVEGYQDSLYTHSK--------RQFYRETDITGTVDFIFGNSA 383 (529)
T ss_pred EEeeEEEecCCCCC-CceEEEEecCC----cEEEEeeeEeccCCcceeCCC--------CEEEEeeEEccccceecccce
Q ss_pred cCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEe-cCCCCEEeEEEEeEEEEecC
Q 038330 116 CGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTG-IQEAPFANICLSNISLLINP 173 (223)
Q Consensus 116 y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g-~~~~~i~nI~f~NV~i~~~~ 173 (223)
..+++-+|.-..-.+...-+..++ .+...-.++.|.|.+|++..
T Consensus 384 --------------avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 384 --------------VVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred --------------EEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
No 62
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=29.28 E-value=2.5e+02 Score=27.24 Aligned_cols=40 Identities=3% Similarity=-0.078 Sum_probs=22.8
Q ss_pred EEEEEEEEEEeccce-------eEEEEecCCCCEEeEEEEeEEEEec
Q 038330 133 DQITFKDIIGTNITI-------AGNFTGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~-------~~~i~g~~~~~i~nI~f~NV~i~~~ 172 (223)
..+.|.|.+++.... .-...|.|=.+-..+.|-+..+...
T Consensus 443 ~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 443 TGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGL 489 (566)
T ss_pred CEEEEEcCEEecCCcccccccccceeeecCCCCcceEEEEecccCCe
Confidence 467788887776431 1122455545556666776666553
No 63
>PLN02671 pectinesterase
Probab=29.25 E-value=4.2e+02 Score=24.18 Aligned_cols=110 Identities=8% Similarity=0.025 Sum_probs=58.9
Q ss_pred eecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCe-eeEEee
Q 038330 36 TTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINV-AFGACG 114 (223)
Q Consensus 36 ~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~-~i~i~~ 114 (223)
...+.+.||.|... -+-|--.+ -.-+|+||.|.++-.-|. + . -...|+++++..... .-.|..
T Consensus 185 gDra~f~~c~f~G~-QDTLy~~~------gR~yf~~CyIeG~VDFIF-G----~----g~A~Fe~C~I~s~~~~~G~ITA 248 (359)
T PLN02671 185 GDKAFFYKVRVLGA-QDTLLDET------GSHYFYQCYIQGSVDFIF-G----N----AKSLYQDCVIQSTAKRSGAIAA 248 (359)
T ss_pred CccEEEEcceEecc-ccccEeCC------CcEEEEecEEEEeccEEe-c----c----eeEEEeccEEEEecCCCeEEEe
Confidence 57899999999954 55554322 146888888887532222 1 1 135667777754321 112221
Q ss_pred ecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEec
Q 038330 115 NCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 115 ~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~~ 172 (223)
.-.. .+. .-....|.|.++++.+ .+ ..|.|=.+-..+.|.|..+...
T Consensus 249 ~~r~------~~~---~~~GfvF~~C~itg~g-~v-yLGRPW~~yarvVf~~t~m~~~ 295 (359)
T PLN02671 249 HHRD------SPT---EDTGFSFVNCVINGTG-KI-YLGRAWGNYSRTVYSNCFIADI 295 (359)
T ss_pred eccC------CCC---CCccEEEEccEEccCc-cE-EEeCCCCCCceEEEEecccCCe
Confidence 1100 011 1235677777777654 22 2444444555667777666553
No 64
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=29.16 E-value=3.3e+02 Score=22.55 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=6.6
Q ss_pred EEEEEEEeeEEeCC
Q 038330 64 ISNVQVEKIHLYDS 77 (223)
Q Consensus 64 v~NI~v~n~~i~~~ 77 (223)
.+||++++..|+.+
T Consensus 33 a~nVhIhhN~fY~t 46 (198)
T PF08480_consen 33 AKNVHIHHNIFYDT 46 (198)
T ss_pred cccEEEECcEeecC
Confidence 34555555555443
No 65
>PLN02197 pectinesterase
Probab=27.86 E-value=1.7e+02 Score=28.60 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=21.1
Q ss_pred EEEEEEEEEEeccce--e-----EEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITI--A-----GNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~--~-----~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
..+.|.|.+++.... + -...|.|=.+...+.|-+-.+..
T Consensus 468 tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~ 513 (588)
T PLN02197 468 IGIVLQNCRIVPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGD 513 (588)
T ss_pred cEEEEEccEEecCCcccccccccccccCCCCCCCceEEEEecccCC
Confidence 457777777776431 0 11245444455566666665544
No 66
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=27.42 E-value=1.1e+02 Score=29.45 Aligned_cols=39 Identities=5% Similarity=-0.036 Sum_probs=19.7
Q ss_pred EEEEEEEEEEeccce------e-EEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITI------A-GNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~------~-~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
..+.|.|.+++.... + -.-.|.|=.+-..+.|-+-.+..
T Consensus 420 ~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~ 465 (541)
T PLN02416 420 TGISIQNCSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDD 465 (541)
T ss_pred CEEEEEeeEEecCCccccccccccccccCCCCCCccEEEEecccCC
Confidence 467777777765431 0 11234443344555566655544
No 67
>PLN02304 probable pectinesterase
Probab=27.24 E-value=3e+02 Score=25.29 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=19.9
Q ss_pred EEEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
....|.|.++++.+ -.-.|.+=.+-..+.|.+..+..
T Consensus 275 ~GfvF~~C~itg~g--~vyLGRPW~pysrvVf~~t~m~~ 311 (379)
T PLN02304 275 TGFSFVNCTIGGTG--RIWLGRAWRPYSRVVFAYTSMTD 311 (379)
T ss_pred ceEEEECCEEccCc--ceeecCCCCCcceEEEEecccCC
Confidence 35667777776533 12234444455566666655544
No 68
>PLN02432 putative pectinesterase
Probab=26.57 E-value=4.5e+02 Score=23.19 Aligned_cols=42 Identities=10% Similarity=-0.021 Sum_probs=27.5
Q ss_pred ccEEEEeeEEecC----CceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEE
Q 038330 3 DNVCIEDCIIAMG----HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAF 56 (223)
Q Consensus 3 ~nV~I~nc~i~~g----DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~I 56 (223)
.++..+|..|.+. .-+||+... .....+.||.+... -+-|-.
T Consensus 94 ~~f~a~nlt~~Nt~g~~~QAvAl~v~-----------gDr~~f~~c~~~G~-QDTLy~ 139 (293)
T PLN02432 94 SDFVGRFLTIQNTFGSSGKAVALRVA-----------GDRAAFYGCRILSY-QDTLLD 139 (293)
T ss_pred CCeEEEeeEEEeCCCCCCceEEEEEc-----------CCcEEEEcceEecc-cceeEE
Confidence 4566777777653 356666653 56888888888854 565554
No 69
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=26.34 E-value=1.5e+02 Score=28.62 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=22.5
Q ss_pred EEEEEEEEEEeccce--------e---EEEEecCCCCEEeEEEEeEEEEec
Q 038330 133 DQITFKDIIGTNITI--------A---GNFTGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~--------~---~~i~g~~~~~i~nI~f~NV~i~~~ 172 (223)
..+.|.|.+++.... + -...|.|=.+...+.|-+-.+...
T Consensus 437 ~G~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~ 487 (553)
T PLN02708 437 TGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYSRTVFIGCNLEAL 487 (553)
T ss_pred ceEEEEccEEecCCcccccccccccccceeeecCCCCcceEEEEecccCCe
Confidence 467788887766431 0 122455545566666766665543
No 70
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=26.25 E-value=1.6e+02 Score=28.41 Aligned_cols=40 Identities=5% Similarity=-0.040 Sum_probs=22.4
Q ss_pred EEEEEEEEEEeccce--e-----EEEEecCCCCEEeEEEEeEEEEec
Q 038330 133 DQITFKDIIGTNITI--A-----GNFTGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~--~-----~~i~g~~~~~i~nI~f~NV~i~~~ 172 (223)
..+.|.|.+++.... + -...|.|=.+-..+.|-+-.+...
T Consensus 426 tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~ 472 (548)
T PLN02301 426 TGISIQKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDH 472 (548)
T ss_pred CEEEEEeeEEecCccccccccccceeeecCCCCCceEEEEecccCCe
Confidence 467778877776431 1 123455545566666666655543
No 71
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=25.85 E-value=1.7e+02 Score=27.28 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=16.3
Q ss_pred ceEEEEEEEeEEEEecCeeeEEee
Q 038330 91 GYIKQIVISDAELYNINVAFGACG 114 (223)
Q Consensus 91 g~v~nI~~~ni~~~~~~~~i~i~~ 114 (223)
..+.|+++.+-++-++..+|.+..
T Consensus 307 ~qv~nv~I~~NT~In~~~~i~~g~ 330 (425)
T PF14592_consen 307 DQVKNVLIANNTFINCKSPIHFGA 330 (425)
T ss_dssp ---BSEEEES-EEES-SEEEESST
T ss_pred cccceeEEecceEEccCCceEEcc
Confidence 568999999999999998877644
No 72
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=24.01 E-value=1.6e+02 Score=28.01 Aligned_cols=40 Identities=3% Similarity=-0.041 Sum_probs=21.5
Q ss_pred EEEEEEEEEEeccce--e-----EEEEecCCCCEEeEEEEeEEEEec
Q 038330 133 DQITFKDIIGTNITI--A-----GNFTGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~--~-----~~i~g~~~~~i~nI~f~NV~i~~~ 172 (223)
..+.|.|.+++.... + -...|.|=.+-..+.|-+..+...
T Consensus 373 ~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~l~~~ 419 (497)
T PLN02698 373 TGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESYIDDA 419 (497)
T ss_pred ceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecccCCc
Confidence 457777777776431 1 112454444555666666655543
No 73
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=23.77 E-value=1.7e+02 Score=28.18 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=20.4
Q ss_pred EEEEEEEEEEeccceeEEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITIAGNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~~~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
..+.|.|.+++... +. -.|.|=.+-..+.|-+-.+..
T Consensus 422 ~G~vf~~c~i~~~~-~~-yLGRPW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 422 TGFSIQDSYVLATQ-PT-YLGRPWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred cEEEEEcCEEccCC-ce-EEecCCCCCceEEEEecCCCC
Confidence 45777777777643 22 244444445555566655554
No 74
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=23.49 E-value=3.9e+02 Score=23.46 Aligned_cols=146 Identities=10% Similarity=0.071 Sum_probs=70.5
Q ss_pred cccEEEEeeEEecC-----CceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEeeEEeC
Q 038330 2 SDNVCIEDCIIAMG-----HDAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEKIHLYD 76 (223)
Q Consensus 2 ~~nV~I~nc~i~~g-----DD~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n~~i~~ 76 (223)
.+++..+|..|.+. .-++||... ...+.+.||.|... -+-|-..+ .+.+|+||.|.+
T Consensus 86 a~~f~~~nit~~Nt~g~~~~qAvAl~~~-----------~d~~~f~~c~~~g~-QDTL~~~~------~r~y~~~c~IeG 147 (298)
T PF01095_consen 86 ADDFTAENITFENTAGPSGGQAVALRVS-----------GDRAAFYNCRFLGY-QDTLYANG------GRQYFKNCYIEG 147 (298)
T ss_dssp STT-EEEEEEEEEHCSGSG----SEEET------------TSEEEEEEEEE-S-TT-EEE-S------SEEEEES-EEEE
T ss_pred ccceeeeeeEEecCCCCcccceeeeeec-----------CCcEEEEEeEEccc-cceeeecc------ceeEEEeeEEEe
Confidence 35677777777662 124554432 56889999999965 67776654 168999999988
Q ss_pred CCceEEEEEecCCCceEEEEEEEeEEEEecCe----eeEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccce-----
Q 038330 77 SLNGIEFRTTKGRGGYIKQIVISDAELYNINV----AFGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITI----- 147 (223)
Q Consensus 77 ~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~----~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~----- 147 (223)
.-.=|. . .+ ...|+++++..... .-.|...-. .++ ..=..+.|.|.+++....
T Consensus 148 ~vDFIf-G----~~----~a~f~~c~i~~~~~~~~~~~~ItA~~r------~~~---~~~~G~vF~~c~i~~~~~~~~~~ 209 (298)
T PF01095_consen 148 NVDFIF-G----NG----TAVFENCTIHSRRPGGGQGGYITAQGR------TSP---SQKSGFVFDNCTITGDSGVSPSY 209 (298)
T ss_dssp SEEEEE-E----SS----EEEEES-EEEE--SSTSSTEEEEEE---------CT---TSS-EEEEES-EEEESTTTCGGC
T ss_pred cCcEEE-C----Ce----eEEeeeeEEEEeccccccceeEEeCCc------ccc---CCCeEEEEEEeEEecCccccccc
Confidence 632221 1 11 34577777764321 122221100 001 123567888888886531
Q ss_pred --eEEEEecCCCCEEeEEEEeEEEEecCCCCCCceEEee
Q 038330 148 --AGNFTGIQEAPFANICLSNISLLINPGSYNSWECSNI 184 (223)
Q Consensus 148 --~~~i~g~~~~~i~nI~f~NV~i~~~~~~~~~~~c~nv 184 (223)
.-.-.|.|=.+-..+.|.|..+...-. +..|.-++.
T Consensus 210 ~~~~~yLGRpW~~~s~vvf~~t~m~~~I~-p~GW~~w~~ 247 (298)
T PF01095_consen 210 SDGSVYLGRPWGPYSRVVFINTYMDDHIN-PEGWTPWSG 247 (298)
T ss_dssp CCSTEEEE--SSEETEEEEES-EE-TTEE-TCES--EEE
T ss_pred cceeEEecCcccceeeEEEEccccCCeee-ccCcccccc
Confidence 122345554556678888887776432 234655554
No 75
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=23.44 E-value=1.6e+02 Score=28.74 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=8.6
Q ss_pred EEEEEEEEEEecc
Q 038330 133 DQITFKDIIGTNI 145 (223)
Q Consensus 133 ~nIt~~nI~~~~~ 145 (223)
..+.|.|.+++..
T Consensus 465 tG~v~~~c~i~~~ 477 (587)
T PLN02313 465 TGIVIQNCRIGGT 477 (587)
T ss_pred ceEEEEecEEecC
Confidence 4577777777654
No 76
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=22.99 E-value=2.1e+02 Score=27.42 Aligned_cols=39 Identities=5% Similarity=-0.020 Sum_probs=22.1
Q ss_pred EEEEEEEEEEeccce--e-----EEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITI--A-----GNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~--~-----~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
..+.|.|.+++.... + -...|.|=.+...+.|-+..+..
T Consensus 387 tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~ 432 (509)
T PLN02488 387 SGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGD 432 (509)
T ss_pred cEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEeccCCC
Confidence 457788888776531 1 12345554555666666655554
No 77
>PLN02634 probable pectinesterase
Probab=22.61 E-value=4.3e+02 Score=24.07 Aligned_cols=110 Identities=7% Similarity=-0.024 Sum_probs=60.6
Q ss_pred eecEEEEeEEEec----CCCCeEEEccCCCCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCeeeE
Q 038330 36 TTDVHIRRVLLQS----SSGSSVAFGSEMSGGISNVQVEKIHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVAFG 111 (223)
Q Consensus 36 ~~NI~I~nc~~~~----~~~~gi~IGSe~~g~v~NI~v~n~~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~i~ 111 (223)
.+||+|+|-.-.. ..+.++++-.. -....|.||.|.+...-|.-. .| .-+|+|+.+++.-
T Consensus 153 a~niTf~Nta~~~~~g~~~~QAVAl~v~----gDra~f~~C~f~G~QDTL~~~-----~g---R~yf~~CyIeG~V---- 216 (359)
T PLN02634 153 ARNISFKNTAPAPMPGMQGWQAVAFRIS----GDKAFFFGCGFYGAQDTLCDD-----AG---RHYFKECYIEGSI---- 216 (359)
T ss_pred EEeCeEEeCCccCCCCCCCCceEEEEec----CCcEEEEEeEEecccceeeeC-----CC---CEEEEeeEEcccc----
Confidence 6788888775321 01334444332 237889999999987666632 12 5688999998632
Q ss_pred EeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeEEEEecC-CCCEEeEEEEeEEEEecC
Q 038330 112 ACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAGNFTGIQ-EAPFANICLSNISLLINP 173 (223)
Q Consensus 112 i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~-~~~i~nI~f~NV~i~~~~ 173 (223)
+.=|+. +...+++-+|.-... ....+..++.. ...-.++.|.|.++++.+
T Consensus 217 -DFIFG~---------g~a~Fe~C~I~s~~~--~~g~ITA~~R~~~~~~~GfvF~~C~vtg~g 267 (359)
T PLN02634 217 -DFIFGN---------GRSMYKDCELHSIAS--RFGSIAAHGRTCPEEKTGFAFVGCRVTGTG 267 (359)
T ss_pred -cEEcCC---------ceEEEeccEEEEecC--CCcEEEeCCCCCCCCCcEEEEEcCEEcCCc
Confidence 111221 122555555544311 01123333321 123368999999998753
No 78
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=22.36 E-value=46 Score=28.74 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=14.3
Q ss_pred CceEEEEEEEeEEEEec
Q 038330 90 GGYIKQIVISDAELYNI 106 (223)
Q Consensus 90 gg~v~nI~~~ni~~~~~ 106 (223)
+|.|+|+.++|+.+...
T Consensus 211 gatI~nL~l~nv~I~~~ 227 (250)
T PF05342_consen 211 GATIKNLNLKNVNINGP 227 (250)
T ss_pred CCEEEcceeEEeeeecc
Confidence 78899999999888764
No 79
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=21.80 E-value=2e+02 Score=27.62 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=21.3
Q ss_pred EEEEEEEEEEeccce-------eEEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITI-------AGNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~-------~~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
..+.|.|.+++.... .-...|.|=.+-..+.|-+-.+..
T Consensus 416 tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~ 461 (538)
T PLN03043 416 TGISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGD 461 (538)
T ss_pred ceEEEEecEEecCCcccccccccceeccCCCCCCceEEEEecccCC
Confidence 467788887776431 011245444455566666665554
No 80
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=21.57 E-value=2.1e+02 Score=27.49 Aligned_cols=50 Identities=6% Similarity=-0.102 Sum_probs=27.5
Q ss_pred EEEEEEEEEEeccce--e-----EEEEecCCCCEEeEEEEeEEEEecCCCCCCceEEe
Q 038330 133 DQITFKDIIGTNITI--A-----GNFTGIQEAPFANICLSNISLLINPGSYNSWECSN 183 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~--~-----~~i~g~~~~~i~nI~f~NV~i~~~~~~~~~~~c~n 183 (223)
..+.|.|.+++.... + -...|.|=.+-..+.|.+..+...-. +..|.-++
T Consensus 408 tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~~I~-p~GW~~W~ 464 (530)
T PLN02933 408 TGISIISSRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDLIH-PAGWLEWK 464 (530)
T ss_pred ceEEEEeeEEecCCcccccccccceEeccCCCCCceEEEEecccCCeec-ccccCcCC
Confidence 357788887776421 1 12345555556677777766665422 23455444
No 81
>PLN02665 pectinesterase family protein
Probab=20.79 E-value=6.5e+02 Score=22.98 Aligned_cols=133 Identities=8% Similarity=0.016 Sum_probs=69.2
Q ss_pred cccEEEEeeEEecCC----------ceEEeccCCCcCCccCCCceecEEEEeEEEecCCCCeEEEccCCCCCEEEEEEEe
Q 038330 2 SDNVCIEDCIIAMGH----------DAISLKSGWDEYGIAYGRPTTDVHIRRVLLQSSSGSSVAFGSEMSGGISNVQVEK 71 (223)
Q Consensus 2 ~~nV~I~nc~i~~gD----------D~Iaiksg~~~~g~~~~~~~~NI~I~nc~~~~~~~~gi~IGSe~~g~v~NI~v~n 71 (223)
+++...+|..|.+.- -+||+.-. .....+.||.|... -+-|--.. -.-+|+|
T Consensus 153 a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-----------gDka~f~~C~f~G~-QDTL~~~~------gr~yf~~ 214 (366)
T PLN02665 153 SDYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-----------GDKAAFYNCRFIGF-QDTLCDDK------GRHFFKD 214 (366)
T ss_pred CCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-----------CCcEEEEcceeccc-cceeEeCC------CCEEEEe
Confidence 356667777776632 35555542 57899999999954 56665432 2567888
Q ss_pred eEEeCCCceEEEEEecCCCceEEEEEEEeEEEEecCee--eEEeeecCCCCCCCCCCCCCCcEEEEEEEEEEEeccceeE
Q 038330 72 IHLYDSLNGIEFRTTKGRGGYIKQIVISDAELYNINVA--FGACGNCGSHPDDDFDPDALPAIDQITFKDIIGTNITIAG 149 (223)
Q Consensus 72 ~~i~~~~~gi~Ikt~~g~gg~v~nI~~~ni~~~~~~~~--i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~ 149 (223)
|.|.++-.=|. + . -...|++|++...... -.|... .+..+. .=....|.|.++++....+
T Consensus 215 CyIeG~VDFIF-G----~----g~a~fe~C~i~s~~~~~~g~ITA~------~r~~~~---~~~GfvF~~C~itg~~~~~ 276 (366)
T PLN02665 215 CYIEGTVDFIF-G----S----GKSLYLNTELHVVGDGGLRVITAQ------ARNSEA---EDSGFSFVHCKVTGTGTGA 276 (366)
T ss_pred eEEeeccceec-c----c----cceeeEccEEEEecCCCcEEEEcC------CCCCCC---CCceEEEEeeEEecCCCce
Confidence 88887532221 1 1 1335666666543221 111111 000000 1234567777776654222
Q ss_pred EEEecCCCCEEeEEEEeEEEEe
Q 038330 150 NFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 150 ~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
..|.+=.+-..+.|.+-.+..
T Consensus 277 -yLGRpW~~ysrvVf~~t~m~~ 297 (366)
T PLN02665 277 -YLGRAWMSRPRVVFAYTEMSS 297 (366)
T ss_pred -eecCCCCCcceEEEEccccCC
Confidence 345444455556666655554
No 82
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=20.64 E-value=2.9e+02 Score=26.53 Aligned_cols=40 Identities=5% Similarity=-0.097 Sum_probs=22.4
Q ss_pred EEEEEEEEEEeccce-------eEEEEecCCCCEEeEEEEeEEEEec
Q 038330 133 DQITFKDIIGTNITI-------AGNFTGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~-------~~~i~g~~~~~i~nI~f~NV~i~~~ 172 (223)
..+.|.|.+++.... .-.-.|.|=.+-..+.|-+..+...
T Consensus 396 ~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 396 TGFSIQFSNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDA 442 (520)
T ss_pred cEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEecCcCCe
Confidence 457777777766321 0122455555566666766666553
No 83
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=20.64 E-value=1.8e+02 Score=27.95 Aligned_cols=39 Identities=10% Similarity=-0.024 Sum_probs=23.3
Q ss_pred EEEEEEEEEEecccee-------EEEEecCCCCEEeEEEEeEEEEe
Q 038330 133 DQITFKDIIGTNITIA-------GNFTGIQEAPFANICLSNISLLI 171 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~~-------~~i~g~~~~~i~nI~f~NV~i~~ 171 (223)
..+.|.|.+++..... -...|.|=.+-..+.|-+..+..
T Consensus 415 ~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~ 460 (539)
T PLN02995 415 TGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDN 460 (539)
T ss_pred ceEEEEeeEEecCCcccccccccceeccCCCCCCcceEEEeccccC
Confidence 4678888887774311 12345555556667777766654
No 84
>PLN02314 pectinesterase
Probab=20.10 E-value=2.4e+02 Score=27.49 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=21.2
Q ss_pred EEEEEEEEEEeccce--eEEEEecCCCCEEeEEEEeEEEEec
Q 038330 133 DQITFKDIIGTNITI--AGNFTGIQEAPFANICLSNISLLIN 172 (223)
Q Consensus 133 ~nIt~~nI~~~~~~~--~~~i~g~~~~~i~nI~f~NV~i~~~ 172 (223)
..+.|.|.+++.... .-...|.|=.+-..+.|-+-.+...
T Consensus 468 ~G~vf~~c~i~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 468 TGISIQRCTISAFGNLTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred CEEEEEeeEEecCCcccccccccCCCCCCceEEEEecccCCc
Confidence 456777777776531 1112344434455556666555553
Done!