Citrus Sinensis ID: 038331

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MATCSSTATIPKDFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLRNAALKLKDDFTINDAKTKGNR
cccccccccccccccccEEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEcccccccccEEEEEEcccEEEEccEEEEcccccccEEEEEEcccEEEEEccEEEccccccccccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEcccccEEEEcccccccccEEEEEEccEEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHccccccccccccccccccccccccccEEEEccccccc
ccccHHHHHHHHcccccccEEEEcccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEcccccccEcEEEEEEEcccEEEEEEEEEcccccccccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccEEEEccccccccccEEEEEEcEEEccccccEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHcccccccccccccHHHHHHccHHHHcccccccccccccccccEEEccccccccc
matcsstatipkdfSTAVLIRVEKYGRGDFRTIQEAIdsvpannaELVFISVapgiyrekiivpankpfitisgtrashtkitwsdggsildsaTLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRilsynhtllddtgnhyyskcyiegatdfisGNANSFFERCLIHSLSTWGGAITAQKrvssqentgftfldckisgvgkavlgrtwgpYSRVVYALTYMsdvivpqgwndlndhakhnklyygeyrcsgpgadgskrvawSNSLSDAEASMFlskdltgggAWLRNAALklkddftindaktkgnr
matcsstatipkdfstaVLIRVEKYGRGDFRTIQEaidsvpannAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLRNAalklkddftindaktkgnr
MATCSSTATIPKDFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLRNAALKLKDDFTINDAKTKGNR
***********KDFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHNKLYYGEYRCSGP*******VAW*********SMFLSKDLTGGGAWLRNAALKLKDDFTI*********
*****************VLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLRNAALKLKDDFTI*********
MATCSSTATIPKDFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLRNAALKLKDDFTINDAKTKGNR
************DFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLRNAALKLKDDFTIND*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MATCSSTATIPKDFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLRNAALKLKDDFTINDAKTKGNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
Q9SIJ9352 Putative pectinesterase 1 yes no 0.912 0.832 0.606 1e-106
Q8VYZ3383 Probable pectinesterase 5 no no 0.900 0.754 0.452 4e-72
Q9ZQA3407 Probable pectinesterase 1 no no 0.928 0.732 0.392 2e-63
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.878 0.742 0.434 7e-63
Q9LSP1344 Probable pectinesterase 6 no no 0.872 0.813 0.410 3e-62
O23038393 Probable pectinesterase 8 no no 0.915 0.748 0.387 3e-61
Q8LPF3362 Probable pectinesterase 6 no no 0.875 0.776 0.395 4e-61
Q9LY18361 Probable pectinesterase 4 no no 0.875 0.778 0.403 2e-60
Q9LY17361 Probable pectinesterase 5 no no 0.875 0.778 0.4 3e-60
Q9LVQ0317 Pectinesterase 31 OS=Arab no no 0.847 0.858 0.421 4e-58
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function desciption
 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/295 (60%), Positives = 224/295 (75%), Gaps = 2/295 (0%)

Query: 16  TAVLIRVEKYGRGDFRTIQEAIDSVPAN--NAELVFISVAPGIYREKIIVPANKPFITIS 73
           TA+LIRV++ G+GDF  IQEAI+S+P N  N++L FI V PGIYREK+++PA KP+IT+S
Sbjct: 47  TAILIRVDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITLS 106

Query: 74  GTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFY 133
           GT+AS+T + WSDG  IL+S TLT+ AS F+ R LTIQN +G+ G+AVALRV+AD+AAFY
Sbjct: 107 GTQASNTFLIWSDGEDILESPTLTIFASDFVCRFLTIQNKFGTAGRAVALRVAADKAAFY 166

Query: 134 GCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGAITAQKR 193
           GC I SY  TLLDD GNHY+  CYIEGATDFI G+A+S +ERC +HSLS   G+ITAQ R
Sbjct: 167 GCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGSITAQMR 226

Query: 194 VSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLNDHAKHN 253
            S+ E +GFTFL CK++G G   LGR WG YSRVV+A ++ S+V+ PQGWN   D  K N
Sbjct: 227 TSATEKSGFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKEN 286

Query: 254 KLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLRNAALKLKD 308
            +YYGEY+C GPGAD  +RV WS  LSD EA++FLSKD  GG  WLR A    K+
Sbjct: 287 TVYYGEYKCYGPGADREQRVEWSKQLSDEEATVFLSKDFIGGKDWLRPAPSHFKN 341
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVQ0|PME31_ARATH Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
224077850315 predicted protein [Populus trichocarpa] 0.956 0.974 0.652 1e-113
147843788342 hypothetical protein VITISV_004378 [Viti 0.928 0.871 0.640 1e-110
359475108318 PREDICTED: putative pectinesterase 11 [V 0.928 0.937 0.634 1e-109
297744396365 unnamed protein product [Vitis vinifera] 0.928 0.816 0.634 1e-109
255543703346 Pectinesterase-3 precursor, putative [Ri 0.897 0.832 0.652 1e-108
302142511 422 unnamed protein product [Vitis vinifera] 0.925 0.703 0.606 1e-106
225458247365 PREDICTED: putative pectinesterase 11 [V 0.925 0.813 0.606 1e-106
15226598352 pectinesterase 11 [Arabidopsis thaliana] 0.912 0.832 0.606 1e-104
297825017352 pectinesterase family protein [Arabidops 0.928 0.846 0.59 1e-103
449462266314 PREDICTED: putative pectinesterase 11-li 0.953 0.974 0.588 1e-101
>gi|224077850|ref|XP_002305435.1| predicted protein [Populus trichocarpa] gi|222848399|gb|EEE85946.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/308 (65%), Positives = 240/308 (77%), Gaps = 1/308 (0%)

Query: 1   MATCSSTATIPKDFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIY-RE 59
           ++  S+  T   D STA+LIRVE+ G+GDF+ IQ+AIDSVP+NN+ELVFI V PG Y RE
Sbjct: 8   LSLMSAATTGSIDMSTAILIRVEQSGKGDFKKIQDAIDSVPSNNSELVFIWVKPGTYSRE 67

Query: 60  KIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGK 119
           KI+VPA+KPFIT+SGT+ S T ITW+DGG+I++S TLTVLAS F+ R LTIQNT+GS GK
Sbjct: 68  KIVVPADKPFITLSGTQPSDTIITWNDGGNIMESPTLTVLASDFVGRYLTIQNTFGSAGK 127

Query: 120 AVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIH 179
           AVALRVS DRAAFYGCRILSY  TLLDDTG+HYYS CYIEGATDFI GNA S FERC +H
Sbjct: 128 AVALRVSGDRAAFYGCRILSYQDTLLDDTGSHYYSNCYIEGATDFICGNAASLFERCHLH 187

Query: 180 SLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIV 239
           S+ST  G+ITAQ R  + ENTG  FL CKI+G G   LGR WG YSRV+YA TYMS VI 
Sbjct: 188 SISTNNGSITAQHRNLASENTGLVFLGCKITGAGTTFLGRPWGAYSRVLYAFTYMSGVIA 247

Query: 240 PQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWL 299
           P GW+D  D +KH+ ++Y EY+C GPGAD SKRV WS SLS+ +A+  L+KD+ GG +WL
Sbjct: 248 PAGWDDWADPSKHSTVFYAEYKCYGPGADRSKRVGWSQSLSNDDAAPLLTKDMIGGSSWL 307

Query: 300 RNAALKLK 307
           R A    K
Sbjct: 308 RPAPTSFK 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147843788|emb|CAN79458.1| hypothetical protein VITISV_004378 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475108|ref|XP_002280496.2| PREDICTED: putative pectinesterase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744396|emb|CBI37658.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255543703|ref|XP_002512914.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223547925|gb|EEF49417.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142511|emb|CBI19714.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458247|ref|XP_002281308.1| PREDICTED: putative pectinesterase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15226598|ref|NP_179755.1| pectinesterase 11 [Arabidopsis thaliana] gi|75206124|sp|Q9SIJ9.1|PME11_ARATH RecName: Full=Putative pectinesterase 11; Short=PE 11; AltName: Full=Pectin methylesterase 11; Short=AtPME11 gi|4567229|gb|AAD23644.1| putative pectinesterase [Arabidopsis thaliana] gi|330252108|gb|AEC07202.1| pectinesterase 11 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825017|ref|XP_002880391.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326230|gb|EFH56650.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449462266|ref|XP_004148862.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] gi|449507359|ref|XP_004163009.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.953 0.869 0.603 2.7e-100
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.900 0.754 0.452 1.1e-66
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.919 0.724 0.403 1.5e-60
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.869 0.770 0.406 4.5e-59
TAIR|locus:2086037344 AT3G17060 [Arabidopsis thalian 0.875 0.816 0.408 5.7e-59
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.884 0.786 0.404 8.4e-58
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.875 0.778 0.4 7.5e-57
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.919 0.885 0.389 4.8e-55
TAIR|locus:2196805361 PPME1 [Arabidopsis thaliana (t 0.866 0.770 0.395 9.9e-55
TAIR|locus:2183334361 AT5G07410 [Arabidopsis thalian 0.866 0.770 0.395 4.3e-54
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
 Identities = 187/310 (60%), Positives = 235/310 (75%)

Query:     1 MATCSSTATIPKDFSTAVLIRVEKYGRGDFRTIQEAIDSVPAN--NAELVFISVAPGIYR 58
             MA+ SS ++I  DFSTA+LIRV++ G+GDF  IQEAI+S+P N  N++L FI V PGIYR
Sbjct:    34 MASSSSPSSI--DFSTAILIRVDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYR 91

Query:    59 EKIIVPANKPFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYG 118
             EK+++PA KP+IT+SGT+AS+T + WSDG  IL+S TLT+ AS F+ R LTIQN +G+ G
Sbjct:    92 EKVVIPAEKPYITLSGTQASNTFLIWSDGEDILESPTLTIFASDFVCRFLTIQNKFGTAG 151

Query:   119 KAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLI 178
             +AVALRV+AD+AAFYGC I SY  TLLDD GNHY+  CYIEGATDFI G+A+S +ERC +
Sbjct:   152 RAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHL 211

Query:   179 HSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVI 238
             HSLS   G+ITAQ R S+ E +GFTFL CK++G G   LGR WG YSRVV+A ++ S+V+
Sbjct:   212 HSLSPNNGSITAQMRTSATEKSGFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVV 271

Query:   239 VPQGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAW 298
              PQGWN   D  K N +YYGEY+C GPGAD  +RV WS  LSD EA++FLSKD  GG  W
Sbjct:   272 APQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWSKQLSDEEATVFLSKDFIGGKDW 331

Query:   299 LRNAALKLKD 308
             LR A    K+
Sbjct:   332 LRPAPSHFKN 341
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196805 PPME1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183334 AT5G07410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SIJ9PME11_ARATH3, ., 1, ., 1, ., 1, 10.60670.91270.8323yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-166
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-110
PLN02671359 PLN02671, PLN02671, pectinesterase 4e-95
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 7e-94
PLN02773317 PLN02773, PLN02773, pectinesterase 5e-89
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 1e-87
PLN02304379 PLN02304, PLN02304, probable pectinesterase 8e-87
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-84
PLN02634359 PLN02634, PLN02634, probable pectinesterase 7e-82
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 7e-77
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-61
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 4e-58
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 7e-53
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-52
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-51
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 9e-51
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-50
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 7e-50
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 2e-49
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 4e-49
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 3e-48
PLN02314586 PLN02314, PLN02314, pectinesterase 5e-47
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 5e-47
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 4e-46
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 6e-45
PLN02217670 PLN02217, PLN02217, probable pectinesterase/pectin 6e-44
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-43
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 2e-42
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 3e-42
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 5e-40
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-37
PLN02197588 PLN02197, PLN02197, pectinesterase 3e-37
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 1e-32
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 5e-23
TIGR04247377 TIGR04247, NosD_copper_fam, nitrous oxide reductas 3e-04
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information 
 Score =  463 bits (1192), Expect = e-166
 Identities = 198/293 (67%), Positives = 240/293 (81%)

Query: 8   ATIPKDFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANK 67
           +T   D STA+LIRV++ G+GDFR IQ+AID+VP+NN++LVFI V PGIYREK++VPA+K
Sbjct: 1   STSSIDLSTAILIRVDQSGKGDFRKIQDAIDAVPSNNSQLVFIWVKPGIYREKVVVPADK 60

Query: 68  PFITISGTRASHTKITWSDGGSILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSA 127
           PFIT+SGT+AS+T ITW+DGG I +S TL+VLAS F+ R LTIQNT+GS GKAVALRV+ 
Sbjct: 61  PFITLSGTQASNTIITWNDGGDIFESPTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAG 120

Query: 128 DRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGA 187
           DRAAFYGCRILSY  TLLDDTG HYY  CYIEGATDFI GNA S FE+C +HSLS   GA
Sbjct: 121 DRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAASLFEKCHLHSLSPNNGA 180

Query: 188 ITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLN 247
           ITAQ+R S+ ENTGFTFL CK++G G   LGR WGPYSRVV+AL+YMS V+ PQGW+D  
Sbjct: 181 ITAQQRTSASENTGFTFLGCKLTGAGTTYLGRPWGPYSRVVFALSYMSSVVAPQGWDDWG 240

Query: 248 DHAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLR 300
           D +K + ++YGEY+C GPGAD SKRV WS+ LS  EA+ FL+KD+ GG +WLR
Sbjct: 241 DSSKQSTVFYGEYKCYGPGADRSKRVEWSHDLSQDEAAPFLTKDMIGGQSWLR 293

Length = 293
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family maturation protein NosD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
PLN02432293 putative pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.5
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.88
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.86
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.76
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.46
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.97
KOG1777 625 consensus Putative Zn-finger protein [General func 97.61
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.33
PLN02793443 Probable polygalacturonase 97.22
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.1
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.94
PLN03010409 polygalacturonase 96.93
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.89
PLN02773317 pectinesterase 96.85
PLN03003456 Probable polygalacturonase At3g15720 96.85
PLN02480343 Probable pectinesterase 96.82
PLN02671359 pectinesterase 96.79
smart00656190 Amb_all Amb_all domain. 96.71
PLN02218431 polygalacturonase ADPG 96.63
PRK10531422 acyl-CoA thioesterase; Provisional 96.36
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.3
PLN02155394 polygalacturonase 96.13
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.98
PLN02176340 putative pectinesterase 95.96
PLN02497331 probable pectinesterase 95.96
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.96
PLN02304379 probable pectinesterase 95.95
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.88
PLN02432293 putative pectinesterase 95.86
PLN02682369 pectinesterase family protein 95.63
PLN02634359 probable pectinesterase 95.6
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.47
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.42
PLN02197588 pectinesterase 95.34
PLN02301548 pectinesterase/pectinesterase inhibitor 95.23
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.23
PLN02665366 pectinesterase family protein 95.17
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.1
PLN02468565 putative pectinesterase/pectinesterase inhibitor 95.03
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.02
PLN02916502 pectinesterase family protein 95.01
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.89
PLN02217670 probable pectinesterase/pectinesterase inhibitor 94.89
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.87
PLN02314586 pectinesterase 94.83
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.77
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 94.45
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.4
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.3
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.24
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 94.05
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.97
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.93
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.72
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 93.38
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 92.96
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 91.84
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 91.4
PLN02188404 polygalacturonase/glycoside hydrolase family prote 90.51
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 87.63
PLN02218431 polygalacturonase ADPG 86.93
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 86.58
PLN02793443 Probable polygalacturonase 85.66
smart00722146 CASH Domain present in carbohydrate binding protei 85.14
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 84.39
PLN02155394 polygalacturonase 80.87
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 80.05
>PLN02432 putative pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-96  Score=688.24  Aligned_cols=292  Identities=68%  Similarity=1.178  Sum_probs=281.0

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEeCceEeeeEEecCCCCCeEEeCCCCCceEEEecCCC
Q 038331            9 TIPKDFSTAVLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGG   88 (321)
Q Consensus         9 ~~~~~~~~a~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~g~~~tvI~~~~~~   88 (321)
                      ++..+-+++..++|+++|+|+|+|||+||+++|..+++|++|+|+||+|+|+|.||++||+|+|+|+++++|+|++++..
T Consensus         2 ~~~~~~~~~~~~~Va~~Gsg~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~   81 (293)
T PLN02432          2 TSSIDLSTAILIRVDQSGKGDFRKIQDAIDAVPSNNSQLVFIWVKPGIYREKVVVPADKPFITLSGTQASNTIITWNDGG   81 (293)
T ss_pred             cccccccceEEEEECCCCCCCccCHHHHHhhccccCCceEEEEEeCceeEEEEEEeccCceEEEEEcCCCCeEEEecCCc
Confidence            34456667889999999999999999999999999899999999999999999999999999999999999999999988


Q ss_pred             CcCCceEEEEEcCcEEEEceEEEecCCCCCceEEEEEeCCceEEEeeEEeeccceeeeCCCcEEeeecEEeCceeEEeCc
Q 038331           89 SILDSATLTVLASHFIARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGN  168 (321)
Q Consensus        89 ~~~~sat~~v~a~~~~~~nlti~N~~g~~~qAvAl~v~gd~~~~~nC~~~g~QDTl~~~~gr~~~~~c~I~G~vDfIfG~  168 (321)
                      .++.++||.|.+++|+++||||+|+++..+||+||++.|||+.|++|+|+|||||||++.|||||+||+|+|+||||||+
T Consensus        82 ~~~~saT~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFIFG~  161 (293)
T PLN02432         82 DIFESPTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGN  161 (293)
T ss_pred             ccccceEEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEEecC
Confidence            88999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEEEEecCCCceEEEecccCCCCceeEEEEccEEeecCceeecccccccceEEEEccccCCccccCCCCCCCC
Q 038331          169 ANSFFERCLIHSLSTWGGAITAQKRVSSQENTGFTFLDCKISGVGKAVLGRTWGPYSRVVYALTYMSDVIVPQGWNDLND  248 (321)
Q Consensus       169 ~~a~fe~c~i~~~~~~~g~itA~~r~~~~~~~G~vf~~c~i~~~~~~yLGRpW~~~s~vvf~~t~~~~~I~p~GW~~w~~  248 (321)
                      |+++||+|+|+++....|+||||+|+++.+++||||++|+|++.+++||||||++|+||||++|+|+++|.|+||.+|+.
T Consensus       162 g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg~g~~yLGRpW~~~srvvf~~t~l~~~I~p~GW~~w~~  241 (293)
T PLN02432        162 AASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTGAGTTYLGRPWGPYSRVVFALSYMSSVVAPQGWDDWGD  241 (293)
T ss_pred             ceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcccchhhccCCCCCccEEEEEecccCCeEcCcccCccCC
Confidence            99999999999987667999999998888999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCccEEEEeCccCCCCCCCCcccccCCCCHHHHhcccccccccCCCCCC
Q 038331          249 HAKHNKLYYGEYRCSGPGADGSKRVAWSNSLSDAEASMFLSKDLTGGGAWLR  300 (321)
Q Consensus       249 ~~~~~~~~f~Ey~~~GpGa~~~~Rv~w~~~Lt~~ea~~~~~~~~~~g~~W~p  300 (321)
                      +.++++++|+||+|+|||+++++|++|+++|+++||++|+..+||++++|++
T Consensus       242 ~~~~~~~~f~Ey~~~GpGa~~s~Rv~w~~~Lt~~ea~~f~~~~~i~g~~Wl~  293 (293)
T PLN02432        242 SSKQSTVFYGEYKCYGPGADRSKRVEWSHDLSQDEAAPFLTKDMIGGQSWLR  293 (293)
T ss_pred             CCCCCceEEEEEcccCCCCCccCCccccccCCHHHHHHhhHHhccCCCccCC
Confidence            8888899999999999999999999999999999999999999999999985

>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-43
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 3e-39
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 5e-12
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 6e-12
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 6e-12
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 9e-11
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 150/301 (49%), Gaps = 20/301 (6%)
Query: 20  IRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASH 79
           + V   G GD++T+ EA+ + P ++     I +  G+YRE + VP  K  I   G   + 
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 80  TKITWS----DGGSILDSATLTVLASHFIARSLTIQNTYGSYG-KAVALRVSADRAAFYG 134
           T IT S    DG +  +SAT+  + + F+AR +T QNT G+   +AVALRV +D +AFY 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYR 128
Query: 135 CRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGGA---ITAQ 191
           C IL+Y  +L   +   ++  C+I G  DFI GNA    + C IH+     G    +TAQ
Sbjct: 129 CDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQ 188
Query: 192 KRVSSQENTGFTFLDCKISGVG---------KAVLGRTWGPYSRVVYALTYMSDVIVPQG 242
            R    +NTG      +I                LGR W  YSR V   + +++VI P G
Sbjct: 189 GRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAG 248
Query: 243 WNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSN---SLSDAEASMFLSKDLTGGGAWL 299
           W   + +   + LYYGEY+ +G GA  S RV W       S  EA  F       GG+WL
Sbjct: 249 WFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWL 308
Query: 300 R 300
           +
Sbjct: 309 K 309
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-118
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-117
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 5e-95
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-92
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-79
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  342 bits (880), Expect = e-118
 Identities = 105/311 (33%), Positives = 149/311 (47%), Gaps = 20/311 (6%)

Query: 20  IRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASH 79
           + V   G GD++T+ EA+ + P ++     I +  G+YRE + VP  K  I   G   + 
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 80  TKITWS----DGGSILDSATLTVLASHFIARSLTIQNTYGSYGK-AVALRVSADRAAFYG 134
           T IT S    DG +  +SAT+  + + F+AR +T QNT G+    AVALRV +D +AFY 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYR 128

Query: 135 CRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSL---STWGGAITAQ 191
           C IL+Y  +L   +   ++  C+I G  DFI GNA    + C IH+    S     +TAQ
Sbjct: 129 CDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQ 188

Query: 192 KRVSSQENTGFTFLDCKISG---------VGKAVLGRTWGPYSRVVYALTYMSDVIVPQG 242
            R    +NTG      +I                LGR W  YSR V   + +++VI P G
Sbjct: 189 GRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAG 248

Query: 243 WNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNS---LSDAEASMFLSKDLTGGGAWL 299
           W   + +   + LYYGEY+ +G GA  S RV W       S  EA  F       GG+WL
Sbjct: 249 WFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWL 308

Query: 300 RNAALKLKDDF 310
           +          
Sbjct: 309 KATTFPFSLGL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.74
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.49
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.95
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.37
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.92
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.89
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.74
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.69
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.58
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.57
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.51
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.5
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.48
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.46
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.46
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.45
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.43
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.43
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.37
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.35
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.35
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.19
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.11
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.04
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.94
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.93
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.85
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.75
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.75
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.73
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.42
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.15
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.96
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.95
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.78
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 95.45
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.62
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 93.67
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 93.51
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 92.44
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 92.31
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 91.71
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 91.16
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 90.79
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 90.08
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 89.87
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 86.37
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 84.7
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 84.3
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.4e-88  Score=645.41  Aligned_cols=293  Identities=35%  Similarity=0.598  Sum_probs=276.3

Q ss_pred             eEEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEeCceEeeeEEecCCCCCeEEeCCCCCceEEEecCC----CCcCCc
Q 038331           18 VLIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDG----GSILDS   93 (321)
Q Consensus        18 ~~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~g~~~tvI~~~~~----~~~~~s   93 (321)
                      ..++|+++|+|+|+|||+||++||+++++|++|+|+||+|+|+|.|++.||+|+|+|+++++|+|+++..    .+++.+
T Consensus         3 ~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s   82 (317)
T 1xg2_A            3 ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRS   82 (317)
T ss_dssp             CSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGG
T ss_pred             ceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccce
Confidence            3589999999999999999999999999999999999999999999988999999999999999999863    346689


Q ss_pred             eEEEEEcCcEEEEceEEEecCCC-CCceEEEEEeCCceEEEeeEEeeccceeeeCCCcEEeeecEEeCceeEEeCcccee
Q 038331           94 ATLTVLASHFIARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSF  172 (321)
Q Consensus        94 at~~v~a~~~~~~nlti~N~~g~-~~qAvAl~v~gd~~~~~nC~~~g~QDTl~~~~gr~~~~~c~I~G~vDfIfG~~~a~  172 (321)
                      +||.|.+++|+++||||+|++++ .+||+||++.+|++.|+||+|+|+|||||++.+||||++|+|+|+||||||++.++
T Consensus        83 atv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~av  162 (317)
T 1xg2_A           83 ATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVV  162 (317)
T ss_dssp             CSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEE
T ss_pred             eEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEE
Confidence            99999999999999999999986 47999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEecC---CCceEEEecccCCCCceeEEEEccEEeecC---------ceeecccccccceEEEEccccCCcccc
Q 038331          173 FERCLIHSLST---WGGAITAQKRVSSQENTGFTFLDCKISGVG---------KAVLGRTWGPYSRVVYALTYMSDVIVP  240 (321)
Q Consensus       173 fe~c~i~~~~~---~~g~itA~~r~~~~~~~G~vf~~c~i~~~~---------~~yLGRpW~~~s~vvf~~t~~~~~I~p  240 (321)
                      ||+|+|+++..   ..++||||+|+++.+++||||++|+|++.+         ++||||||++|+||||++|+|+++|.|
T Consensus       163 f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p  242 (317)
T 1xg2_A          163 FQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP  242 (317)
T ss_dssp             EESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBCT
T ss_pred             EeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCcccc
Confidence            99999999753   458999999999999999999999999764         689999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCccEEEEeCccCCCCCCCCcccccC--CC-CHHHHhcccccccccCCCCCCCCCCcccCCc
Q 038331          241 QGWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSN--SL-SDAEASMFLSKDLTGGGAWLRNAALKLKDDF  310 (321)
Q Consensus       241 ~GW~~w~~~~~~~~~~f~Ey~~~GpGa~~~~Rv~w~~--~L-t~~ea~~~~~~~~~~g~~W~p~~~~~~~~~~  310 (321)
                      +||.+|+.+..+++++|+||+|+|||+++++||+|++  +| +++||++|+..+||+|++|+|...+|+..++
T Consensus       243 ~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             TCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             cccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            9999999887889999999999999999999999996  56 5799999999999999999999999999887
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 321
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-102
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-67
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 3e-05
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  299 bits (768), Expect = e-102
 Identities = 105/301 (34%), Positives = 149/301 (49%), Gaps = 20/301 (6%)

Query: 22  VEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTK 81
           V   G GD++T+ EA+ + P ++     I +  G+YRE + VP  K  I   G   + T 
Sbjct: 11  VAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTI 70

Query: 82  ITWS----DGGSILDSATLTVLASHFIARSLTIQNTYG-SYGKAVALRVSADRAAFYGCR 136
           IT S    DG +  +SAT+  + + F+AR +T QNT G +  +AVALRV +D +AFY C 
Sbjct: 71  ITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCD 130

Query: 137 ILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFFERCLIHSLSTWGG---AITAQKR 193
           IL+Y  +L   +   ++  C+I G  DFI GNA    + C IH+     G    +TAQ R
Sbjct: 131 ILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGR 190

Query: 194 VSSQENTGFTFLDCKISGVG---------KAVLGRTWGPYSRVVYALTYMSDVIVPQGWN 244
               +NTG      +I                LGR W  YSR V   + +++VI P GW 
Sbjct: 191 TDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWF 250

Query: 245 DLNDHAKHNKLYYGEYRCSGPGADGSKRVAWSNS---LSDAEASMFLSKDLTGGGAWLRN 301
             + +   + LYYGEY+ +G GA  S RV W       S  EA  F       GG+WL+ 
Sbjct: 251 PWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA 310

Query: 302 A 302
            
Sbjct: 311 T 311
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.26
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.96
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.34
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.47
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.4
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.15
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.13
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.07
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.86
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.82
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.73
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.71
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.23
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.96
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.81
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.04
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.55
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 93.54
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 92.08
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 91.99
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 91.93
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 90.49
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 89.1
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 89.07
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 88.67
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 80.66
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=5.3e-93  Score=673.94  Aligned_cols=292  Identities=35%  Similarity=0.627  Sum_probs=276.5

Q ss_pred             EEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEeCceEeeeEEecCCCCCeEEeCCCCCceEEEecCCC----CcCCce
Q 038331           19 LIRVEKYGRGDFRTIQEAIDSVPANNAELVFISVAPGIYREKIIVPANKPFITISGTRASHTKITWSDGG----SILDSA   94 (321)
Q Consensus        19 ~~~V~~~g~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~g~~~tvI~~~~~~----~~~~sa   94 (321)
                      .++|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.||++||+|+|+|++++.|+|+++...    ++..++
T Consensus         8 ~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sa   87 (319)
T d1gq8a_           8 NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSA   87 (319)
T ss_dssp             SEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGC
T ss_pred             CEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcccccc
Confidence            4999999999999999999999999999999999999999999999999999999999999999998653    367899


Q ss_pred             EEEEEcCcEEEEceEEEecCCC-CCceEEEEEeCCceEEEeeEEeeccceeeeCCCcEEeeecEEeCceeEEeCccceeE
Q 038331           95 TLTVLASHFIARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYNHTLLDDTGNHYYSKCYIEGATDFISGNANSFF  173 (321)
Q Consensus        95 t~~v~a~~~~~~nlti~N~~g~-~~qAvAl~v~gd~~~~~nC~~~g~QDTl~~~~gr~~~~~c~I~G~vDfIfG~~~a~f  173 (321)
                      ||.+.+++|+++||||+|++|. ++||+||++.+||+.|++|+|+|+|||||++.|||||++|+|||+||||||+++++|
T Consensus        88 t~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a~f  167 (319)
T d1gq8a_          88 TVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVL  167 (319)
T ss_dssp             SEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEEEE
T ss_pred             ceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCceeEe
Confidence            9999999999999999999985 579999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecC---CCceEEEecccCCCCceeEEEEccEEeecC---------ceeecccccccceEEEEccccCCccccC
Q 038331          174 ERCLIHSLST---WGGAITAQKRVSSQENTGFTFLDCKISGVG---------KAVLGRTWGPYSRVVYALTYMSDVIVPQ  241 (321)
Q Consensus       174 e~c~i~~~~~---~~g~itA~~r~~~~~~~G~vf~~c~i~~~~---------~~yLGRpW~~~s~vvf~~t~~~~~I~p~  241 (321)
                      |+|+|+++..   ..++||||+|+++.+++||||++|+|++.+         ++||||||++++||||++|+|+++|.|+
T Consensus       168 ~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~p~  247 (319)
T d1gq8a_         168 QDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA  247 (319)
T ss_dssp             ESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBCTT
T ss_pred             ecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccccccc
Confidence            9999999753   346899999999999999999999999763         4699999999999999999999999999


Q ss_pred             CCCCCCCCCCCCccEEEEeCccCCCCCCCCccccc---CCCCHHHHhcccccccccCCCCCCCCCCcccCCc
Q 038331          242 GWNDLNDHAKHNKLYYGEYRCSGPGADGSKRVAWS---NSLSDAEASMFLSKDLTGGGAWLRNAALKLKDDF  310 (321)
Q Consensus       242 GW~~w~~~~~~~~~~f~Ey~~~GpGa~~~~Rv~w~---~~Lt~~ea~~~~~~~~~~g~~W~p~~~~~~~~~~  310 (321)
                      ||.+|+.+..+++++|+||+|+|||+++++||+|+   ++|+++||++|+.++||+|++|+|...+|+..++
T Consensus       248 GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             CCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            99999988889999999999999999999999997   5899999999999999999999999999998875
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure