Citrus Sinensis ID: 038332

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MRPVLKSLIVFTLLSTISFRAARADQDCKGSNVAYTVTVDQSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSYFINQDGWISKQPQ
cHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEEcccccEEEEccccccccEEEEEEEcccEEEEccEEEEccccccccccccccccEEEEEEEccEEEEEccEEEEccccEEcccccEEEcccEEEEEcEEEEcccEEEEEccEEEEEccccccccccEEEEEccccccccccEEEEEccEEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccEEccccccccccc
ccHHHHccccccccccccHHHHHHHHcccccccccEEEEEccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEEccccccEcEEEEEEEcccEEEEEEEEEccccccccccccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccccccEEEEccccccccccEEEEEEcEEEccccccccccHHHHccEEEEEccccccccccccccccccccccEEEEHEEccccccccccccccccEEccHHHHHHccHHHHHccccccccccc
MRPVLKSLIVFTLLSTISFRAARadqdckgsnvAYTVTVDQSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVkiqrnkpcillegegsgvtkityddhqstdtsatfssfadnVVAKGITFevegrdlgtlqaGNDITQALAARiygdksafydcrflgvqdtlwdvqgrhffkscyIEGAIDFIfgngqsvyedcsvnstaglliggrgsgyitaqsrgsandpggfvfrggevtgtgqaylgraygpysRVIFYNAWlssvvtppgwnawnlqgqegnFMYAEvnckgpgsdtsnrvswekkidpkllykYSTSyfinqdgwiskqpq
MRPVLKSLIVFTLLSTISFRAaradqdckgSNVAYTvtvdqsssqYRTVQSAidsipaennqWIKVHIKagtykekvkiqrNKPCILLEGEGSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKgpgsdtsnrvsWEKKIDPKLLYKYSTsyfinqdgwiskqpq
MRPVLKSLIVFTLLSTISFRAARADQDCKGSNVAYTVTVDQSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQstdtsatfssfadNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSYFINQDGWISKQPQ
****LKSLIVFTLLSTISFRAARADQDCKGSNVAYTVTVDQ***QYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQ***TSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQ******DPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGP*****NRVSWEKKIDPKLLYKYSTSYFINQDGWI*****
*****KS*IVFTLLSTISFRAARA*****GSNVAYTVTVDQSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSYFINQDGWIS****
MRPVLKSLIVFTLLSTISFRAARADQDCKGSNVAYTVTVDQSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKG********VSWEKKIDPKLLYKYSTSYFINQDGWISKQPQ
MR***KSLIVFTLLSTISFRAARADQDCKGSNVAYTVTVDQSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSYFINQDGWISK***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRPVLKSLIVFTLLSTISFRAARADQDCKGSNVAYTVTVDQSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSYFINQDGWISKQPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
Q4PSQ5336 Probable pectinesterase 6 yes no 0.889 0.886 0.472 1e-73
Q3E9D3330 Probable pectinesterase 5 no no 0.889 0.903 0.478 3e-72
Q4PSN0335 Probable pectinesterase 2 no no 0.883 0.883 0.471 6e-72
O64479339 Putative pectinesterase 1 no no 0.949 0.938 0.437 1e-71
O04953293 Putative pectinesterase 5 no no 0.737 0.843 0.543 3e-71
Q9LSP1344 Probable pectinesterase 6 no no 0.862 0.840 0.392 4e-56
Q9ZQA3407 Probable pectinesterase 1 no no 0.874 0.719 0.387 8e-55
O23038393 Probable pectinesterase 8 no no 0.874 0.745 0.384 2e-54
Q8VYZ3383 Probable pectinesterase 5 no no 0.856 0.749 0.383 3e-53
Q8LPF3362 Probable pectinesterase 6 no no 0.835 0.773 0.384 5e-52
>sp|Q4PSQ5|PME66_ARATH Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2 Back     alignment and function desciption
 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/305 (47%), Positives = 196/305 (64%), Gaps = 7/305 (2%)

Query: 33  VAYTVTVD-QSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGE 91
           +AYT+TVD      + TVQSAIDSI   N+ WI+V  + G Y+EKV I + K  I L+G+
Sbjct: 31  IAYTITVDLNGGGNFTTVQSAIDSISPPNHNWIRVFTQNGIYREKVTIPKEKGFIYLQGK 90

Query: 92  GSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGN--DITQALAAR 149
           G   T I YDDHQ+TD SATF++FAD++V  GITF    ++   +   N  +I  A+AAR
Sbjct: 91  GIEQTVIEYDDHQATDISATFTAFADDIVISGITF----KNTYNIVPNNKREIVPAVAAR 146

Query: 150 IYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGL 209
           + GD+    D  F+G+QDTL+D +GRH++K C I G IDFIFG GQS++++C++N T G+
Sbjct: 147 MLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGI 206

Query: 210 LIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVV 269
                  G ITA  R S +D GGFVF    VTG G+  LGRA+G  +RVIF  + LS VV
Sbjct: 207 YAPDNPYGTITAHQRPSPSDEGGFVFSDCTVTGVGKTLLGRAWGSNARVIFDRSRLSDVV 266

Query: 270 TPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSYFINQDGW 329
            P GW+AW  +G E +  + E  C G G+DTS RV W KK+    +  +++  FI+QDGW
Sbjct: 267 LPIGWDAWRAKGNERDLTFVEAGCTGAGADTSQRVPWLKKLSLSEVDGFASVSFIDQDGW 326

Query: 330 ISKQP 334
           IS+ P
Sbjct: 327 ISRFP 331
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q3E9D3|PME55_ARATH Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1 Back     alignment and function description
>sp|O64479|PME10_ARATH Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1 Back     alignment and function description
>sp|O04953|PME52_ARATH Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
255576760388 Pectinesterase-2 precursor, putative [Ri 0.988 0.853 0.531 1e-101
449454131362 PREDICTED: probable pectinesterase 66-li 0.958 0.886 0.526 1e-94
356533537305 PREDICTED: probable pectinesterase 66-li 0.898 0.986 0.556 6e-92
224124474324 predicted protein [Populus trichocarpa] 0.928 0.959 0.538 8e-92
224122908339 predicted protein [Populus trichocarpa] 0.970 0.958 0.524 4e-90
356553547311 PREDICTED: probable pectinesterase 66-li 0.904 0.974 0.532 4e-86
357493703332 Pectinesterase [Medicago truncatula] gi| 0.970 0.978 0.494 7e-86
255548405 663 pectinesterase, putative [Ricinus commun 0.946 0.478 0.504 3e-84
357493699329 Pectinesterase [Medicago truncatula] gi| 0.937 0.954 0.497 7e-83
225462781328 PREDICTED: probable pectinesterase 29-li 0.895 0.914 0.509 4e-81
>gi|255576760|ref|XP_002529267.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223531256|gb|EEF33099.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/335 (53%), Positives = 235/335 (70%), Gaps = 4/335 (1%)

Query: 3   PVLKSLIVFTLLSTISFRAARADQDCKG--SNVAYTVTVDQS-SSQYRTVQSAIDSIPAE 59
           P L   I+  +   +         +CK    NVA TVTV +S   Q++T+Q+AIDSIP  
Sbjct: 4   PWLLVFIIIIMWLNVYLAVVYGAVECKNWSENVASTVTVGKSGHEQFKTIQTAIDSIPQS 63

Query: 60  NNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQSTDTSATFSSFADNV 119
           NN+WIK+ +  G Y EKV I   KPCI LEG G  ++ I ++ H+ TDTSATFSS ADN 
Sbjct: 64  NNKWIKITVSPGVYMEKVNIPEEKPCIFLEGSGRSLSTIVFNAHEETDTSATFSSLADNF 123

Query: 120 VAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFK 179
           +A GITF+    +    +    I QA+AA+++GDKSAFY+C F+G QDTLWD +GRH+F 
Sbjct: 124 LATGITFQ-NSYNRALKEEDEKIRQAVAAKLFGDKSAFYECGFVGFQDTLWDEKGRHYFY 182

Query: 180 SCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGE 239
           +CYIEGAIDFIFGNGQS Y+DC +N+T+  + G   +GYITAQSRGS  +  GFVFR G 
Sbjct: 183 NCYIEGAIDFIFGNGQSFYQDCLLNATSPAVAGNVEAGYITAQSRGSNTETTGFVFRKGS 242

Query: 240 VTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSD 299
           V+G+ Q YLGRAYGPYSRVIF+    +++V+P GWNAW+ QG++GN +Y E++CKGPGSD
Sbjct: 243 VSGSSQTYLGRAYGPYSRVIFHETTFNAIVSPQGWNAWHFQGRQGNLVYTEIDCKGPGSD 302

Query: 300 TSNRVSWEKKIDPKLLYKYSTSYFINQDGWISKQP 334
           TS RV W KK+D + + K+S S FI++DGW+ K P
Sbjct: 303 TSKRVPWMKKLDQEEICKFSRSSFIDEDGWLHKLP 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449454131|ref|XP_004144809.1| PREDICTED: probable pectinesterase 66-like [Cucumis sativus] gi|449490909|ref|XP_004158746.1| PREDICTED: probable pectinesterase 66-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356533537|ref|XP_003535320.1| PREDICTED: probable pectinesterase 66-like [Glycine max] Back     alignment and taxonomy information
>gi|224124474|ref|XP_002330032.1| predicted protein [Populus trichocarpa] gi|222871457|gb|EEF08588.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122908|ref|XP_002318946.1| predicted protein [Populus trichocarpa] gi|222857322|gb|EEE94869.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356553547|ref|XP_003545116.1| PREDICTED: probable pectinesterase 66-like [Glycine max] Back     alignment and taxonomy information
>gi|357493703|ref|XP_003617140.1| Pectinesterase [Medicago truncatula] gi|355518475|gb|AET00099.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255548405|ref|XP_002515259.1| pectinesterase, putative [Ricinus communis] gi|223545739|gb|EEF47243.1| pectinesterase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357493699|ref|XP_003617138.1| Pectinesterase [Medicago truncatula] gi|355518473|gb|AET00097.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|225462781|ref|XP_002263748.1| PREDICTED: probable pectinesterase 29-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
TAIR|locus:2148508293 AT5G26810 [Arabidopsis thalian 0.734 0.839 0.521 2.6e-67
TAIR|locus:2179659330 AT5G18990 [Arabidopsis thalian 0.886 0.9 0.460 4e-67
TAIR|locus:2093736335 AT3G24130 [Arabidopsis thalian 0.883 0.883 0.448 1.3e-66
TAIR|locus:2065145336 AT2G47280 [Arabidopsis thalian 0.940 0.937 0.430 6.7e-65
TAIR|locus:2059030339 AT2G19150 [Arabidopsis thalian 0.949 0.938 0.416 1.1e-64
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.862 0.710 0.38 1.2e-51
TAIR|locus:2086037344 AT3G17060 [Arabidopsis thalian 0.865 0.843 0.373 1.2e-51
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.859 0.732 0.38 2.4e-51
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.937 0.826 0.340 4.6e-50
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.925 0.880 0.364 1.2e-49
TAIR|locus:2148508 AT5G26810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 649 (233.5 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
 Identities = 131/251 (52%), Positives = 159/251 (63%)

Query:    90 GEGSGVTKITYDDHQXXXXXXXXXXXXXNVVAKGITFEVEGRDLGTLQAGN----DITQA 145
             GEG  VT ITY+ H              ++V + ++       L +L   N    DI  A
Sbjct:    42 GEGQRVTTITYNGHAATDVSSTFTSYPSHIVVRNLSIMNTYNRLTSLTKANGMSWDIKPA 101

Query:   146 LAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNS 205
             +A  +YGDKSAFY+C FLG+QDT+WD  GRH FK+CYIEGAIDFIFG+GQSVYEDC +N+
Sbjct:   102 VAISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINA 161

Query:   206 TAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWL 265
             TAG L      GYITAQ R S +DP GFVF  G V+G+   YLGRAYGP+SRVIF    L
Sbjct:   162 TAGALASKVSFGYITAQGRSSDSDPSGFVFLRGSVSGSTSVYLGRAYGPFSRVIFIQTDL 221

Query:   266 SSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLL-YKYSTSYFI 324
             SSVV P GW +W+  G E +F YAEV CKG GSD S RV W  K+       ++S S FI
Sbjct:   222 SSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPWIDKLHSFYTKQQFSISNFI 281

Query:   325 NQDGWISKQPQ 335
             +QD WIS  P+
Sbjct:   282 DQDQWISNIPR 292
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2179659 AT5G18990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093736 AT3G24130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065145 AT2G47280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059030 AT2G19150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4PSQ5PME66_ARATH3, ., 1, ., 1, ., 1, 10.47210.88950.8869yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-124
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-103
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 5e-87
PLN02432293 PLN02432, PLN02432, putative pectinesterase 3e-82
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 6e-80
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 4e-78
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-71
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-71
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 2e-67
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-67
PLN02773317 PLN02773, PLN02773, pectinesterase 2e-65
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 7e-56
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 7e-52
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-49
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-48
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 5e-47
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 9e-46
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 2e-44
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 5e-44
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 6e-44
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 6e-43
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 7e-43
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 3e-42
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 9e-41
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 6e-39
PLN02314586 PLN02314, PLN02314, pectinesterase 3e-38
PLN02197588 PLN02197, PLN02197, pectinesterase 7e-37
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 2e-36
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 5e-36
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 2e-35
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 3e-33
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 4e-28
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-24
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 4e-21
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information 
 Score =  358 bits (920), Expect = e-124
 Identities = 152/302 (50%), Positives = 193/302 (63%), Gaps = 3/302 (0%)

Query: 34  AYTVTVDQSS-SQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEG 92
              V VDQS    + T+QSAIDS+P+ N  W  +++KAG Y+EKVKI  +KP I+L G G
Sbjct: 31  QQQVFVDQSGHGNFTTIQSAIDSVPSNNKHWFCINVKAGLYREKVKIPYDKPFIVLVGAG 90

Query: 93  SGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYG 152
              T+I +DDH ST  S TFS+ ADN V K ITF     +  +    N    A+AA I G
Sbjct: 91  KRRTRIEWDDHDSTAQSPTFSTLADNTVVKSITF-ANSYNFPSKGNKNPRVPAVAAMIGG 149

Query: 153 DKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIG 212
           DKSAFY C F GVQDTLWD  GRH+FK C I+GA+DFIFG+GQS+YE C +    G L  
Sbjct: 150 DKSAFYSCGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQSIYESCVIQVLGGQLEP 209

Query: 213 GRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPP 272
           G  +G+ITAQ R +  D  GFVF+   V GTG AYLGR +  YSRV+FYN+ L+ VV P 
Sbjct: 210 GL-AGFITAQGRTNPYDANGFVFKNCLVYGTGSAYLGRPWRGYSRVLFYNSNLTDVVVPE 268

Query: 273 GWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSYFINQDGWISK 332
           GW+AWN  G E    +AE  C G G++TS RVSW KK+    +   ++  FIN++GW+  
Sbjct: 269 GWDAWNFVGHENQLTFAEHGCFGSGANTSKRVSWVKKLSGSAVQNLTSLSFINREGWVED 328

Query: 333 QP 334
           QP
Sbjct: 329 QP 330

Length = 331
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.56
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.03
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.95
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.78
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.72
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.45
PLN02793443 Probable polygalacturonase 97.91
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.82
PLN02682369 pectinesterase family protein 97.76
PLN03010409 polygalacturonase 97.73
PLN02634359 probable pectinesterase 97.73
PLN02218431 polygalacturonase ADPG 97.35
PLN03003456 Probable polygalacturonase At3g15720 97.33
PLN02480343 Probable pectinesterase 97.22
PLN02773317 pectinesterase 97.21
KOG1777 625 consensus Putative Zn-finger protein [General func 97.13
PLN02497331 probable pectinesterase 97.12
PLN02432293 putative pectinesterase 97.07
PLN02671359 pectinesterase 97.01
PLN02155394 polygalacturonase 96.95
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.9
PLN02665366 pectinesterase family protein 96.87
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.76
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.68
PRK10531422 acyl-CoA thioesterase; Provisional 96.59
PLN02176340 putative pectinesterase 96.55
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.41
PLN02304379 probable pectinesterase 96.32
PLN02916502 pectinesterase family protein 96.27
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.26
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.2
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.15
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.13
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 96.09
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.03
PLN02197588 pectinesterase 95.9
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.89
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.85
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.79
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.78
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.77
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.65
smart00656190 Amb_all Amb_all domain. 95.64
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.63
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 95.6
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.59
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.57
PLN02484587 probable pectinesterase/pectinesterase inhibitor 95.36
PLN02314586 pectinesterase 95.25
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.19
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.17
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.17
PLN02313587 Pectinesterase/pectinesterase inhibitor 95.03
PLN02301548 pectinesterase/pectinesterase inhibitor 94.97
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.96
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.2
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 92.69
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 92.32
smart00722146 CASH Domain present in carbohydrate binding protei 91.55
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 91.34
PLN02188404 polygalacturonase/glycoside hydrolase family prote 91.08
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 89.86
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 88.84
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 88.72
PLN02218431 polygalacturonase ADPG 88.03
PLN02793443 Probable polygalacturonase 84.5
PLN02155394 polygalacturonase 83.68
>PLN02176 putative pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=5.6e-93  Score=680.40  Aligned_cols=320  Identities=45%  Similarity=0.810  Sum_probs=286.6

Q ss_pred             HHHHHhhhhhcccccccccCCCcccEEEEcCCCC-CCccHHHHHHhCCCCCCceEEEEEeCeEEeeeeeecCCcCeeEEE
Q 038332           11 FTLLSTISFRAARADQDCKGSNVAYTVTVDQSSS-QYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLE   89 (335)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~~G~-~f~TIq~AIdaa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~   89 (335)
                      -||+.++++.-  +-..+++...+.+++|+++|+ +|+|||+|||++|+++.+|++|+|+||+|+|+|+||++||+|+|+
T Consensus        17 ~~~~~~~~~~~--~~~~~~~~~~~~~i~Va~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~EkV~Ip~~k~~vtl~   94 (340)
T PLN02176         17 CLLVMTLAYGS--AEYDAASSQIAKTIIVNPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYREKVTIPKEKGYIYMQ   94 (340)
T ss_pred             HHHHHHHhhcc--ccccccccccCceEEECCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEEEEEEECCCCccEEEE
Confidence            33444444433  334455677788999999999 999999999999999889999999999999999999999999999


Q ss_pred             ecCCCceEEEecCCCCCCCceEEEEEcCceEEEceEEEeccCCccccCCCCCcCceEEEEEeCCceEEEeeEEeecccee
Q 038332           90 GEGSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTL  169 (335)
Q Consensus        90 G~~~~~tiI~~~~~~~~~~sat~~v~a~~~~~~nlt~~N~~~~~~~~~~~~~~~qavAl~v~~d~~~~~nc~~~g~QDTL  169 (335)
                      |++.++|+|++++...+..++||.+.+++|+++||||+|+++..  .+....++|||||++.+||++|++|+|+|+||||
T Consensus        95 G~g~~~TiIt~~~~~~t~~saT~~v~a~~F~a~nlT~~Nt~~~~--~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTL  172 (340)
T PLN02176         95 GKGIEKTIIAYGDHQATDTSATFTSYASNIIITGITFKNTYNIA--SNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTL  172 (340)
T ss_pred             EcCCCceEEEEeCCcccccceEEEEECCCEEEEeeEEEeCCCcc--CCCCCCccceEEEEecCccEEEEccEEeccccee
Confidence            99999999999988878889999999999999999999999731  1111223499999999999999999999999999


Q ss_pred             eecccceeEeecEEEceeeEEeccceeEEeeeEEEeccCCccCCCcceeEEecCcCCCCCCceEEEECcEEEeeceEEee
Q 038332          170 WDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQAYLG  249 (335)
Q Consensus       170 ~~~~gr~~f~~c~I~G~vDfIfG~g~a~fe~c~i~~~~~~~~~~~~~g~ItA~~~~~~~~~~Gfvf~~c~i~~~~~~yLG  249 (335)
                      |++.|||||++|+|||+||||||+|+++||+|+|+++.+........|+||||+|.++++++||||++|+|++++++|||
T Consensus       173 y~~~gRqyf~~CyIeG~VDFIFG~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g~~yLG  252 (340)
T PLN02176        173 FDGKGRHYYKRCVISGGIDFIFGYAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGVGKALLG  252 (340)
T ss_pred             EeCCcCEEEEecEEEecccEEecCceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccCcceeee
Confidence            99999999999999999999999999999999999985311011126999999998878899999999999999999999


Q ss_pred             ecccCcceEEEEccccCCccCCCCCCCCCCCCCCcceEEEEecccCCCCCCCCceecccCCCHHHHhcccccccccCCCC
Q 038332          250 RAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSYFINQDGW  329 (335)
Q Consensus       250 RpW~~~~~vv~~~t~~~~~I~~~GW~~~~~~~~~~~~~f~Ey~~~G~Ga~~~~r~~~~~~l~~~ea~~~~~~~~~~~~~W  329 (335)
                      |||++|+||||++|+|+++|.|+||.+|+...+.++++|+||+|+|||+++++|++|+++|+++||.+|+..+||++++|
T Consensus       253 RPW~~yarvVf~~t~m~~~I~p~GW~~W~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~Lt~~ea~~~t~~~fi~g~~W  332 (340)
T PLN02176        253 RAWGSYARVIFYRSRFSDVILPIGWDAWRAKGQERHITFVEFGCTGVGADTSKRVPWLKKASEKDVLQFTNLTFIDEEGW  332 (340)
T ss_pred             cCCCCCceEEEEecCcCCeEccCCcCccCCCCCCCceEEEEecccCCCCCcccCccccccCCHHHHhhhhHhhccCCCCc
Confidence            99999999999999999999999999999876778999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 038332          330 ISKQP  334 (335)
Q Consensus       330 ~~~~~  334 (335)
                      +|.+|
T Consensus       333 l~~~~  337 (340)
T PLN02176        333 LSRLP  337 (340)
T ss_pred             CCcCC
Confidence            99987

>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 3e-32
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 3e-27
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-14
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 3e-14
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 3e-13
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 7e-11
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 129/291 (44%), Gaps = 27/291 (9%)
Query: 30  GSNVAYTVTVDQSSSQYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLE 89
           G NV   V     S  Y+TV  A+ + P ++     + IKAG Y+E V + + K  I+  
Sbjct: 6   GPNV---VVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFL 62
Query: 90  GEGSGVTKIT----YDDHQXXXXXXXXXXXXXNVVAKGITFEVEGRDLGTLQAGNDITQA 145
           G+G   T IT      D                 +A+ ITF+          AG    QA
Sbjct: 63  GDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNT--------AGAAKHQA 114
Query: 146 LAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNS 205
           +A R+  D SAFY C  L  QD+L+    R FF +C+I G +DFIFGN   V +DC +++
Sbjct: 115 VALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHA 174
Query: 206 TAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTGQ---------AYLGRAYGPYS 256
                 G      +TAQ R   N   G V +   +  T            YLGR +  YS
Sbjct: 175 RRP---GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYS 231
Query: 257 RVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWE 307
           R +   + +++V+ P GW  W+         Y E    G G+ TS RV+W+
Sbjct: 232 RTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWK 282
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-116
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-115
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-98
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 2e-98
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-78
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  337 bits (866), Expect = e-116
 Identities = 96/318 (30%), Positives = 142/318 (44%), Gaps = 28/318 (8%)

Query: 30  GSNVAYTVTVDQSSS-QYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILL 88
            S V   V V    S  Y+TV  A+ + P ++     + IKAG Y+E V + + K  I+ 
Sbjct: 2   SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMF 61

Query: 89  EGEGSGVTKITYDDHQ----STDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQ 144
            G+G   T IT   +     +T  SAT ++     +A+ ITF+          AG    Q
Sbjct: 62  LGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNT--------AGAAKHQ 113

Query: 145 ALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVN 204
           A+A R+  D SAFY C  L  QD+L+    R FF +C+I G +DFIFGN   V +DC ++
Sbjct: 114 AVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIH 173

Query: 205 STAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTG---------QAYLGRAYGPY 255
           +      G      +TAQ R   N   G V +   +  T            YLGR +  Y
Sbjct: 174 ARRP---GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEY 230

Query: 256 SRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWE---KKIDP 312
           SR +   + +++V+ P GW  W+         Y E    G G+ TS RV+W+        
Sbjct: 231 SRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSS 290

Query: 313 KLLYKYSTSYFINQDGWI 330
                ++   FI    W+
Sbjct: 291 TEAQGFTPGSFIAGGSWL 308
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.78
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.69
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.11
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.58
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.25
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.04
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.98
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.97
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.81
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.79
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.76
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.72
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.69
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.68
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.68
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.6
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.52
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.5
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.35
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.33
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.32
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.06
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.86
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.83
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.68
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.63
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.59
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.49
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.43
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.34
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.3
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.23
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.03
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 95.81
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.67
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.64
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.49
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 95.44
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.33
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 95.3
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 91.6
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 91.25
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 91.09
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 89.84
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 89.72
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 88.91
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 88.61
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 88.13
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 88.12
2inu_A410 Insulin fructotransferase; right-handed parallel b 87.75
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 83.94
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=1.2e-83  Score=615.71  Aligned_cols=290  Identities=32%  Similarity=0.577  Sum_probs=269.2

Q ss_pred             cccEEEEcCCCC-CCccHHHHHHhCCCCCCceEEEEEeCeEEeeeeeecCCcCeeEEEecCCCceEEEecCCCC----CC
Q 038332           33 VAYTVTVDQSSS-QYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQS----TD  107 (335)
Q Consensus        33 ~~~~i~V~~~G~-~f~TIq~AIdaa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~tiI~~~~~~~----~~  107 (335)
                      .+.+++|+++|+ +|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|+|+|++.++|+|+++....    +.
T Consensus         5 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   84 (319)
T 1gq8_A            5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             ccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccccCCCCcc
Confidence            567899999999 9999999999999999999999999999999999999899999999999999999987532    45


Q ss_pred             CceEEEEEcCceEEEceEEEeccCCccccCCCCCcCceEEEEEeCCceEEEeeEEeeccceeeecccceeEeecEEEcee
Q 038332          108 TSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAI  187 (335)
Q Consensus       108 ~sat~~v~a~~~~~~nlt~~N~~~~~~~~~~~~~~~qavAl~v~~d~~~~~nc~~~g~QDTL~~~~gr~~f~~c~I~G~v  187 (335)
                      .++||.|.+++|+++||||+|+++        +..+||+||++.+|++.|+||+|+|+|||||++++|+||++|+|+|++
T Consensus        85 ~satv~v~a~~f~~~nlt~~Nt~g--------~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~v  156 (319)
T 1gq8_A           85 NSATVAAVGAGFLARDITFQNTAG--------AAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTV  156 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCC--------GGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESS
T ss_pred             ceEEEEEECCCEEEEEeEeEccCC--------CcCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEEeee
Confidence            789999999999999999999988        334599999999999999999999999999999999999999999999


Q ss_pred             eEEeccceeEEeeeEEEeccCCccCCCcceeEEecCcCCCCCCceEEEECcEEEeec---------eEEeeecccCcceE
Q 038332          188 DFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTG---------QAYLGRAYGPYSRV  258 (335)
Q Consensus       188 DfIfG~g~a~fe~c~i~~~~~~~~~~~~~g~ItA~~~~~~~~~~Gfvf~~c~i~~~~---------~~yLGRpW~~~~~v  258 (335)
                      |||||++.++||+|+|+++++...+   .++||||+|.++++++||||+||+|++++         ++||||||++|+|+
T Consensus       157 DFIfG~~~a~f~~c~i~~~~~~~~~---~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~  233 (319)
T 1gq8_A          157 DFIFGNAAVVLQDCDIHARRPGSGQ---KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRT  233 (319)
T ss_dssp             SCEEESCEEEEESCEEEECCCSTTC---CEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEE
T ss_pred             eEEecCCcEEEEeeEEEEecCCCCC---ceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceE
Confidence            9999999999999999998863322   68999999998889999999999999865         69999999999999


Q ss_pred             EEEccccCCccCCCCCCCCCCCCCCcceEEEEecccCCCCCCCCceeccc--CC-CHHHHhcccccccccCCCCCCCC
Q 038332          259 IFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEK--KI-DPKLLYKYSTSYFINQDGWISKQ  333 (335)
Q Consensus       259 v~~~t~~~~~I~~~GW~~~~~~~~~~~~~f~Ey~~~G~Ga~~~~r~~~~~--~l-~~~ea~~~~~~~~~~~~~W~~~~  333 (335)
                      ||++|+|+++|.|+||.+|++..+.++++|+||+|+|||+++++|++|++  +| +++||++|+..+||+|++|+|..
T Consensus       234 v~~~t~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~  311 (319)
T 1gq8_A          234 VVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKAT  311 (319)
T ss_dssp             EEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGG
T ss_pred             EEEeccCCCcccccccCcCCCCCCCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCCC
Confidence            99999999999999999999877778999999999999999999999997  56 56999999999999999999853
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 335
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 4e-97
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 3e-69
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 0.002
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  288 bits (738), Expect = 4e-97
 Identities = 97/319 (30%), Positives = 142/319 (44%), Gaps = 28/319 (8%)

Query: 31  SNVAYTVTVDQSSS-QYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLE 89
           S V   V V    S  Y+TV  A+ + P ++     + IKAG Y+E V + + K  I+  
Sbjct: 3   STVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFL 62

Query: 90  GEGSGVTKITYD----DHQSTDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQA 145
           G+G   T IT      D  +T  SAT ++     +A+ ITF+          AG    QA
Sbjct: 63  GDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQN--------TAGAAKHQA 114

Query: 146 LAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNS 205
           +A R+  D SAFY C  L  QD+L+    R FF +C+I G +DFIFGN   V +DC +++
Sbjct: 115 VALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHA 174

Query: 206 TAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTG---------QAYLGRAYGPYS 256
                 G      +TAQ R   N   G V +   +  T            YLGR +  YS
Sbjct: 175 RRP---GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYS 231

Query: 257 RVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWE---KKIDPK 313
           R +   + +++V+ P GW  W+         Y E    G G+ TS RV+W+         
Sbjct: 232 RTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSST 291

Query: 314 LLYKYSTSYFINQDGWISK 332
               ++   FI    W+  
Sbjct: 292 EAQGFTPGSFIAGGSWLKA 310
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.35
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.97
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.61
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.89
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.78
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.36
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 97.23
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.8
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.66
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.43
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.31
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.3
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.22
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.06
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.72
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.66
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.48
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 94.01
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 92.6
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 92.3
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 89.88
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 86.34
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 86.19
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 85.45
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 85.18
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.5e-88  Score=645.35  Aligned_cols=291  Identities=32%  Similarity=0.572  Sum_probs=271.4

Q ss_pred             CCcccEEEEcCCCC-CCccHHHHHHhCCCCCCceEEEEEeCeEEeeeeeecCCcCeeEEEecCCCceEEEecCCCC----
Q 038332           31 SNVAYTVTVDQSSS-QYRTVQSAIDSIPAENNQWIKVHIKAGTYKEKVKIQRNKPCILLEGEGSGVTKITYDDHQS----  105 (335)
Q Consensus        31 ~~~~~~i~V~~~G~-~f~TIq~AIdaa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~tiI~~~~~~~----  105 (335)
                      +..+.+++|++||+ ||+|||+|||++|+++++|++|+|+||+|+|+|+||++||+|||+|++++.|+|+++.+..    
T Consensus         3 ~~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~   82 (319)
T d1gq8a_           3 STVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGST   82 (319)
T ss_dssp             CSSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CcCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCc
Confidence            44556799999999 9999999999999999999999999999999999999999999999999999999987543    


Q ss_pred             CCCceEEEEEcCceEEEceEEEeccCCccccCCCCCcCceEEEEEeCCceEEEeeEEeeccceeeecccceeEeecEEEc
Q 038332          106 TDTSATFSSFADNVVAKGITFEVEGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEG  185 (335)
Q Consensus       106 ~~~sat~~v~a~~~~~~nlt~~N~~~~~~~~~~~~~~~qavAl~v~~d~~~~~nc~~~g~QDTL~~~~gr~~f~~c~I~G  185 (335)
                      +..++||.+.+++|+++||||+|+++        ..++||+||++.+||+.|++|+|+|+|||||+++|||||++|+|+|
T Consensus        83 t~~sat~~v~~~~f~a~nitf~Nt~g--------~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG  154 (319)
T d1gq8a_          83 TFNSATVAAVGAGFLARDITFQNTAG--------AAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAG  154 (319)
T ss_dssp             TGGGCSEEECSTTCEEEEEEEEECCC--------GGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEE
T ss_pred             cccccceeeecCCeEEEeeEEEeCCC--------CCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEe
Confidence            56789999999999999999999998        3345999999999999999999999999999999999999999999


Q ss_pred             eeeEEeccceeEEeeeEEEeccCCccCCCcceeEEecCcCCCCCCceEEEECcEEEeec---------eEEeeecccCcc
Q 038332          186 AIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQSRGSANDPGGFVFRGGEVTGTG---------QAYLGRAYGPYS  256 (335)
Q Consensus       186 ~vDfIfG~g~a~fe~c~i~~~~~~~~~~~~~g~ItA~~~~~~~~~~Gfvf~~c~i~~~~---------~~yLGRpW~~~~  256 (335)
                      +||||||+|+++||+|+|+++++...+   .++||||+|.++.+++||||.+|+|++++         ++||||||++++
T Consensus       155 ~vDFIfG~~~a~f~~c~i~~~~~~~~~---~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s  231 (319)
T d1gq8a_         155 TVDFIFGNAAVVLQDCDIHARRPGSGQ---KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYS  231 (319)
T ss_dssp             SSSCEEESCEEEEESCEEEECCCSTTC---CEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTC
T ss_pred             eccEEecCceeEeecceeeeecCCCCC---ceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcc
Confidence            999999999999999999998874333   68999999998889999999999999874         579999999999


Q ss_pred             eEEEEccccCCccCCCCCCCCCCCCCCcceEEEEecccCCCCCCCCceecc---cCCCHHHHhcccccccccCCCCCCC
Q 038332          257 RVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWE---KKIDPKLLYKYSTSYFINQDGWISK  332 (335)
Q Consensus       257 ~vv~~~t~~~~~I~~~GW~~~~~~~~~~~~~f~Ey~~~G~Ga~~~~r~~~~---~~l~~~ea~~~~~~~~~~~~~W~~~  332 (335)
                      ||||++|+|+++|.|+||.+|+...+.++++|+||+|+|||+++++|++|+   ++|+++||++|+..+||+|++|+|+
T Consensus       232 ~vvf~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~  310 (319)
T d1gq8a_         232 RTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA  310 (319)
T ss_dssp             EEEEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGG
T ss_pred             eEEEEecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCccccc
Confidence            999999999999999999999987778899999999999999999999997   4799999999999999999999975
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure