Query 038333
Match_columns 120
No_of_seqs 143 out of 1147
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.9 1.5E-23 3.2E-28 129.6 12.2 96 23-118 8-103 (103)
2 cd01793 Fubi Fubi ubiquitin-li 99.9 5.3E-22 1.1E-26 116.1 8.9 74 43-118 1-74 (74)
3 PTZ00044 ubiquitin; Provisiona 99.9 6.9E-22 1.5E-26 116.1 9.2 76 43-118 1-76 (76)
4 cd01803 Ubiquitin Ubiquitin. U 99.9 1.1E-21 2.3E-26 115.0 9.1 76 43-118 1-76 (76)
5 cd01806 Nedd8 Nebb8-like ubiq 99.9 2E-21 4.4E-26 113.9 9.5 76 43-118 1-76 (76)
6 cd01804 midnolin_N Ubiquitin-l 99.9 2.7E-21 5.9E-26 114.1 8.8 76 42-118 1-76 (78)
7 cd01807 GDX_N ubiquitin-like d 99.9 3.2E-21 7E-26 112.8 8.7 74 43-116 1-74 (74)
8 cd01810 ISG15_repeat2 ISG15 ub 99.9 3.2E-21 7E-26 112.8 8.5 74 45-118 1-74 (74)
9 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 4.7E-20 1E-24 107.4 8.4 71 42-112 1-71 (73)
10 cd01797 NIRF_N amino-terminal 99.8 4.4E-20 9.5E-25 108.9 8.4 74 43-116 1-76 (78)
11 cd01805 RAD23_N Ubiquitin-like 99.8 1.3E-19 2.8E-24 106.5 9.2 74 43-116 1-76 (77)
12 cd01809 Scythe_N Ubiquitin-lik 99.8 2E-19 4.3E-24 104.3 8.5 72 43-114 1-72 (72)
13 cd01800 SF3a120_C Ubiquitin-li 99.8 2E-19 4.3E-24 105.7 7.8 70 50-119 5-74 (76)
14 PF00240 ubiquitin: Ubiquitin 99.8 3.4E-19 7.4E-24 102.7 8.0 69 48-116 1-69 (69)
15 cd01794 DC_UbP_C dendritic cel 99.8 2.9E-19 6.4E-24 103.3 7.7 68 46-113 2-69 (70)
16 cd01798 parkin_N amino-termina 99.8 3.3E-19 7.2E-24 103.1 7.7 70 45-114 1-70 (70)
17 cd01792 ISG15_repeat1 ISG15 ub 99.8 5E-19 1.1E-23 104.9 7.7 72 43-114 3-76 (80)
18 cd01763 Sumo Small ubiquitin-r 99.8 2E-18 4.3E-23 103.9 10.1 80 39-118 8-87 (87)
19 cd01808 hPLIC_N Ubiquitin-like 99.8 1.9E-18 4.2E-23 100.2 8.0 71 43-114 1-71 (71)
20 cd01812 BAG1_N Ubiquitin-like 99.7 6.8E-18 1.5E-22 97.7 7.3 70 43-113 1-70 (71)
21 cd01796 DDI1_N DNA damage indu 99.7 7.9E-18 1.7E-22 97.6 7.4 68 45-112 1-70 (71)
22 cd01813 UBP_N UBP ubiquitin pr 99.7 9.7E-18 2.1E-22 97.9 7.2 69 43-112 1-72 (74)
23 cd01790 Herp_N Homocysteine-re 99.7 2.6E-17 5.6E-22 96.7 7.9 72 42-113 1-78 (79)
24 smart00213 UBQ Ubiquitin homol 99.7 1.9E-16 4.2E-21 89.4 7.0 64 43-107 1-64 (64)
25 KOG0003 Ubiquitin/60s ribosoma 99.6 1.6E-17 3.6E-22 100.9 0.1 76 43-118 1-76 (128)
26 TIGR00601 rad23 UV excision re 99.6 1E-15 2.2E-20 113.2 8.6 73 43-115 1-76 (378)
27 KOG0005 Ubiquitin-like protein 99.6 3.5E-16 7.7E-21 85.5 4.1 70 43-112 1-70 (70)
28 cd01799 Hoil1_N Ubiquitin-like 99.6 4.5E-15 9.8E-20 86.8 7.7 65 48-113 8-74 (75)
29 KOG0004 Ubiquitin/40S ribosoma 99.6 1.1E-15 2.3E-20 98.9 4.5 77 43-119 1-77 (156)
30 cd01769 UBL Ubiquitin-like dom 99.6 9.6E-15 2.1E-19 83.5 7.3 67 47-113 2-68 (69)
31 PF11976 Rad60-SLD: Ubiquitin- 99.6 1.3E-14 2.9E-19 84.1 7.6 71 43-113 1-72 (72)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 1.4E-14 2.9E-19 84.1 4.9 56 58-113 15-74 (75)
33 KOG0010 Ubiquitin-like protein 99.5 4.7E-14 1E-18 105.6 6.8 75 41-116 14-88 (493)
34 cd01795 USP48_C USP ubiquitin- 99.5 9E-14 2E-18 83.9 6.7 63 54-116 16-79 (107)
35 cd01814 NTGP5 Ubiquitin-like N 99.5 9.8E-14 2.1E-18 85.8 6.1 76 41-116 3-92 (113)
36 cd01789 Alp11_N Ubiquitin-like 99.4 2E-12 4.3E-17 77.2 8.8 71 43-113 2-80 (84)
37 KOG0011 Nucleotide excision re 99.4 5.8E-13 1.3E-17 95.5 7.1 74 43-116 1-76 (340)
38 PF14560 Ubiquitin_2: Ubiquiti 99.4 4.9E-12 1.1E-16 75.9 7.7 70 43-112 2-81 (87)
39 cd01788 ElonginB Ubiquitin-lik 99.3 3.9E-11 8.4E-16 74.1 8.0 75 45-120 5-86 (119)
40 PF13881 Rad60-SLD_2: Ubiquiti 99.3 1.6E-10 3.4E-15 72.3 10.2 75 42-116 2-90 (111)
41 PF11543 UN_NPL4: Nuclear pore 99.2 5.1E-11 1.1E-15 70.4 5.8 72 40-112 2-78 (80)
42 PLN02560 enoyl-CoA reductase 99.2 7.8E-11 1.7E-15 85.4 7.7 69 43-111 1-80 (308)
43 cd01801 Tsc13_N Ubiquitin-like 99.1 3.8E-10 8.2E-15 66.2 6.4 52 60-111 20-74 (77)
44 KOG0001 Ubiquitin and ubiquiti 99.1 2.4E-09 5.2E-14 61.0 9.2 73 45-117 2-74 (75)
45 KOG1769 Ubiquitin-like protein 99.1 3.6E-09 7.8E-14 64.0 9.4 79 40-118 18-96 (99)
46 KOG3493 Ubiquitin-like protein 99.0 1.6E-10 3.6E-15 64.3 1.5 70 43-112 2-71 (73)
47 cd01807 GDX_N ubiquitin-like d 98.9 9.2E-10 2E-14 64.0 3.4 39 1-39 35-73 (74)
48 cd00196 UBQ Ubiquitin-like pro 98.9 1.2E-08 2.6E-13 55.7 7.6 65 49-113 4-68 (69)
49 cd01797 NIRF_N amino-terminal 98.9 1.4E-09 3.1E-14 64.0 3.7 40 1-40 37-76 (78)
50 KOG4248 Ubiquitin-like protein 98.9 3.2E-09 6.9E-14 85.6 6.7 72 44-116 4-75 (1143)
51 cd01793 Fubi Fubi ubiquitin-li 98.9 2.2E-09 4.7E-14 62.5 3.9 40 1-40 33-72 (74)
52 cd01794 DC_UbP_C dendritic cel 98.9 2.2E-09 4.8E-14 61.9 3.2 37 1-37 33-69 (70)
53 cd01798 parkin_N amino-termina 98.8 6.8E-09 1.5E-13 59.7 3.2 37 1-37 33-69 (70)
54 PF00240 ubiquitin: Ubiquitin 98.8 1.4E-08 3E-13 58.1 4.4 39 1-39 30-68 (69)
55 cd01811 OASL_repeat1 2'-5' oli 98.7 8.9E-08 1.9E-12 54.9 7.0 70 43-113 1-75 (80)
56 cd01810 ISG15_repeat2 ISG15 ub 98.7 1.4E-08 3.1E-13 59.0 3.9 40 1-40 33-72 (74)
57 cd01802 AN1_N ubiquitin-like d 98.7 1.4E-08 3.1E-13 62.8 3.9 40 1-40 62-101 (103)
58 PTZ00044 ubiquitin; Provisiona 98.7 1.6E-08 3.4E-13 59.0 3.8 40 1-40 35-74 (76)
59 cd01815 BMSC_UbP_N Ubiquitin-l 98.7 8.8E-09 1.9E-13 59.9 2.7 36 2-37 38-74 (75)
60 cd01800 SF3a120_C Ubiquitin-li 98.7 2.9E-08 6.2E-13 58.0 3.7 40 1-40 32-71 (76)
61 cd01806 Nedd8 Nebb8-like ubiq 98.6 4.6E-08 9.9E-13 56.8 4.1 40 1-40 35-74 (76)
62 cd01805 RAD23_N Ubiquitin-like 98.6 5.1E-08 1.1E-12 56.9 4.0 38 3-40 39-76 (77)
63 cd01803 Ubiquitin Ubiquitin. U 98.6 5E-08 1.1E-12 56.6 3.8 40 1-40 35-74 (76)
64 cd01791 Ubl5 UBL5 ubiquitin-li 98.6 3.7E-08 8.1E-13 57.2 2.8 37 1-37 36-72 (73)
65 KOG1872 Ubiquitin-specific pro 98.6 2.2E-07 4.7E-12 69.9 6.9 72 43-115 4-76 (473)
66 cd01809 Scythe_N Ubiquitin-lik 98.6 6.9E-08 1.5E-12 55.5 3.3 37 1-37 35-71 (72)
67 cd01808 hPLIC_N Ubiquitin-like 98.6 6.9E-08 1.5E-12 55.6 3.2 37 1-37 34-70 (71)
68 cd01796 DDI1_N DNA damage indu 98.5 7.5E-08 1.6E-12 55.6 2.9 36 1-36 34-70 (71)
69 KOG0005 Ubiquitin-like protein 98.5 4.1E-08 9E-13 53.9 0.5 36 1-36 35-70 (70)
70 KOG0006 E3 ubiquitin-protein l 98.4 5.5E-07 1.2E-11 65.0 5.8 62 54-115 15-77 (446)
71 cd01804 midnolin_N Ubiquitin-l 98.4 2.2E-07 4.7E-12 54.6 3.1 39 1-40 36-74 (78)
72 KOG0004 Ubiquitin/40S ribosoma 98.4 1.2E-07 2.7E-12 61.6 2.0 40 1-40 35-74 (156)
73 cd01795 USP48_C USP ubiquitin- 98.4 4.3E-07 9.3E-12 55.1 3.7 38 1-38 39-77 (107)
74 PF08817 YukD: WXG100 protein 98.4 1.9E-06 4.1E-11 50.7 6.1 69 43-111 3-78 (79)
75 cd01792 ISG15_repeat1 ISG15 ub 98.4 2.5E-07 5.4E-12 54.5 2.3 39 1-39 37-77 (80)
76 PF13019 Telomere_Sde2: Telome 98.4 5.6E-06 1.2E-10 54.7 8.6 77 43-119 1-89 (162)
77 cd01812 BAG1_N Ubiquitin-like 98.3 3.6E-07 7.8E-12 52.3 2.5 36 1-36 34-69 (71)
78 COG5227 SMT3 Ubiquitin-like pr 98.3 1.1E-06 2.3E-11 52.3 3.9 79 40-118 22-100 (103)
79 cd01763 Sumo Small ubiquitin-r 98.3 1.5E-06 3.2E-11 52.1 4.4 40 1-40 46-85 (87)
80 cd01814 NTGP5 Ubiquitin-like N 98.3 8.4E-07 1.8E-11 55.1 3.2 40 1-40 45-92 (113)
81 PF00789 UBX: UBX domain; Int 98.2 2.6E-05 5.7E-10 45.9 9.1 73 40-112 4-81 (82)
82 PF11470 TUG-UBL1: GLUT4 regul 98.2 6.8E-06 1.5E-10 46.6 6.2 63 49-111 3-65 (65)
83 KOG4495 RNA polymerase II tran 98.2 2.1E-06 4.5E-11 51.6 4.2 58 45-103 5-64 (110)
84 cd01799 Hoil1_N Ubiquitin-like 98.1 2.9E-06 6.3E-11 49.5 2.7 36 1-37 37-74 (75)
85 cd01813 UBP_N UBP ubiquitin pr 98.0 3.6E-06 7.9E-11 48.9 2.5 36 1-36 34-72 (74)
86 cd01790 Herp_N Homocysteine-re 98.0 3.8E-06 8.2E-11 49.4 2.5 35 3-37 42-78 (79)
87 KOG0003 Ubiquitin/60s ribosoma 98.0 2E-07 4.4E-12 57.1 -3.1 40 1-40 35-74 (128)
88 COG5417 Uncharacterized small 98.0 8E-05 1.7E-09 42.8 7.6 68 44-111 8-80 (81)
89 smart00166 UBX Domain present 98.0 0.00011 2.4E-09 43.1 8.3 71 41-111 3-78 (80)
90 smart00213 UBQ Ubiquitin homol 97.9 6.4E-06 1.4E-10 45.8 2.2 31 1-31 34-64 (64)
91 PF10302 DUF2407: DUF2407 ubiq 97.9 4.6E-05 1E-09 46.6 5.5 57 45-101 3-64 (97)
92 cd01769 UBL Ubiquitin-like dom 97.9 1.5E-05 3.3E-10 44.9 2.9 37 1-37 32-68 (69)
93 cd01767 UBX UBX (ubiquitin reg 97.8 0.0004 8.8E-09 40.4 8.6 68 42-111 2-74 (77)
94 TIGR00601 rad23 UV excision re 97.8 2.1E-05 4.5E-10 58.8 3.7 39 2-40 39-77 (378)
95 cd01772 SAKS1_UBX SAKS1-like U 97.8 0.00038 8.2E-09 40.9 8.3 68 43-111 5-77 (79)
96 cd01773 Faf1_like1_UBX Faf1 ik 97.7 0.00057 1.2E-08 40.4 8.3 70 42-112 5-79 (82)
97 cd01770 p47_UBX p47-like ubiqu 97.7 0.00062 1.3E-08 40.0 8.1 68 41-109 3-74 (79)
98 cd01771 Faf1_UBX Faf1 UBX doma 97.7 0.00091 2E-08 39.4 8.4 71 41-112 3-78 (80)
99 cd01774 Faf1_like2_UBX Faf1 ik 97.6 0.0012 2.6E-08 39.3 8.7 71 41-112 3-83 (85)
100 KOG1639 Steroid reductase requ 97.6 0.00013 2.8E-09 51.3 4.6 69 43-111 1-76 (297)
101 KOG0001 Ubiquitin and ubiquiti 97.5 0.00019 4.2E-09 40.2 4.4 40 1-40 34-73 (75)
102 PF11976 Rad60-SLD: Ubiquitin- 97.5 0.00012 2.6E-09 41.9 3.4 36 1-36 35-71 (72)
103 KOG3206 Alpha-tubulin folding 97.5 0.0006 1.3E-08 46.8 6.7 69 44-112 3-79 (234)
104 KOG0010 Ubiquitin-like protein 97.4 0.00012 2.6E-09 55.8 2.7 40 1-40 49-88 (493)
105 PRK06437 hypothetical protein; 97.4 0.0031 6.8E-08 35.8 7.9 59 51-118 9-67 (67)
106 KOG0013 Uncharacterized conser 97.3 0.00053 1.1E-08 47.1 5.1 64 51-114 155-218 (231)
107 PRK08364 sulfur carrier protei 97.2 0.0082 1.8E-07 34.3 8.6 66 43-118 5-70 (70)
108 PF14836 Ubiquitin_3: Ubiquiti 97.2 0.0053 1.1E-07 36.8 8.0 66 53-119 14-85 (88)
109 cd00754 MoaD Ubiquitin domain 97.2 0.0036 7.9E-08 36.3 7.0 60 54-118 17-80 (80)
110 cd01789 Alp11_N Ubiquitin-like 97.1 0.00087 1.9E-08 39.8 4.0 38 1-38 37-81 (84)
111 cd06409 PB1_MUG70 The MUG70 pr 97.0 0.0031 6.8E-08 37.6 5.6 45 45-89 3-50 (86)
112 PLN02799 Molybdopterin synthas 97.0 0.0057 1.2E-07 35.9 6.8 71 43-118 2-82 (82)
113 PF09379 FERM_N: FERM N-termin 97.0 0.0084 1.8E-07 34.8 7.4 67 47-113 1-76 (80)
114 KOG4248 Ubiquitin-like protein 97.0 0.00069 1.5E-08 55.8 3.1 40 1-41 37-76 (1143)
115 KOG0011 Nucleotide excision re 96.9 0.00085 1.9E-08 48.9 3.2 40 2-41 38-77 (340)
116 cd06406 PB1_P67 A PB1 domain i 96.9 0.0077 1.7E-07 35.4 6.6 45 45-91 5-49 (80)
117 PRK06488 sulfur carrier protei 96.9 0.01 2.2E-07 33.3 7.0 60 51-118 6-65 (65)
118 PF11620 GABP-alpha: GA-bindin 96.9 0.0062 1.3E-07 36.1 6.1 60 55-114 5-64 (88)
119 KOG4583 Membrane-associated ER 96.9 0.00059 1.3E-08 49.9 2.0 62 40-101 7-72 (391)
120 PF13881 Rad60-SLD_2: Ubiquiti 96.7 0.0041 8.8E-08 38.9 4.8 38 3-40 47-90 (111)
121 cd06407 PB1_NLP A PB1 domain i 96.7 0.0082 1.8E-07 35.5 5.7 70 44-114 2-81 (82)
122 TIGR01682 moaD molybdopterin c 96.7 0.024 5.2E-07 33.0 7.7 60 54-118 17-80 (80)
123 cd01788 ElonginB Ubiquitin-lik 96.7 0.0018 4E-08 40.4 2.7 37 2-38 37-80 (119)
124 PF12754 Blt1: Cell-cycle cont 96.6 0.00053 1.1E-08 49.7 0.0 77 42-118 78-181 (309)
125 PRK05863 sulfur carrier protei 96.6 0.021 4.5E-07 32.1 6.4 57 56-118 9-65 (65)
126 PRK07440 hypothetical protein; 96.5 0.039 8.4E-07 31.6 7.5 67 42-118 4-70 (70)
127 PRK05659 sulfur carrier protei 96.5 0.028 6.2E-07 31.4 6.8 58 56-118 9-66 (66)
128 cd01801 Tsc13_N Ubiquitin-like 96.5 0.003 6.6E-08 36.7 2.7 34 2-35 39-74 (77)
129 cd00565 ThiS ThiaminS ubiquiti 96.4 0.029 6.2E-07 31.4 6.5 58 56-118 8-65 (65)
130 TIGR01687 moaD_arch MoaD famil 96.4 0.039 8.5E-07 32.6 7.3 61 54-118 17-88 (88)
131 PF02597 ThiS: ThiS family; I 96.4 0.028 6.1E-07 32.2 6.4 63 54-118 13-77 (77)
132 PF15044 CLU_N: Mitochondrial 96.4 0.0089 1.9E-07 34.8 4.2 56 59-114 1-58 (76)
133 smart00666 PB1 PB1 domain. Pho 96.3 0.031 6.6E-07 32.5 6.2 47 43-90 2-48 (81)
134 PRK08053 sulfur carrier protei 96.2 0.067 1.5E-06 30.1 7.4 58 56-118 9-66 (66)
135 TIGR01683 thiS thiamine biosyn 96.2 0.05 1.1E-06 30.4 6.7 58 56-118 7-64 (64)
136 KOG2982 Uncharacterized conser 96.1 0.011 2.3E-07 43.5 4.6 58 55-112 350-415 (418)
137 PRK06944 sulfur carrier protei 96.0 0.1 2.2E-06 29.0 7.4 57 56-118 9-65 (65)
138 smart00295 B41 Band 4.1 homolo 96.0 0.17 3.8E-06 34.0 9.9 74 41-114 2-83 (207)
139 PRK07696 sulfur carrier protei 95.9 0.086 1.9E-06 29.8 6.9 61 51-118 6-67 (67)
140 PRK06083 sulfur carrier protei 95.9 0.17 3.6E-06 30.0 8.8 62 50-118 23-84 (84)
141 PF14453 ThiS-like: ThiS-like 95.9 0.037 8.1E-07 30.4 4.9 49 55-114 8-56 (57)
142 PF10790 DUF2604: Protein of U 95.9 0.09 2E-06 29.6 6.4 67 51-117 4-74 (76)
143 cd06408 PB1_NoxR The PB1 domai 95.8 0.1 2.2E-06 31.1 6.9 55 42-100 2-56 (86)
144 KOG0012 DNA damage inducible p 95.8 0.016 3.5E-07 43.0 4.2 64 51-114 11-76 (380)
145 PF12436 USP7_ICP0_bdg: ICP0-b 95.7 0.14 3.1E-06 36.3 8.7 86 1-86 109-223 (249)
146 cd01760 RBD Ubiquitin-like dom 95.7 0.13 2.9E-06 29.6 6.9 45 45-89 2-46 (72)
147 PF14560 Ubiquitin_2: Ubiquiti 95.6 0.015 3.2E-07 34.6 2.9 39 1-39 38-84 (87)
148 KOG0006 E3 ubiquitin-protein l 95.3 0.0099 2.2E-07 43.5 1.7 39 1-39 38-77 (446)
149 PRK11840 bifunctional sulfur c 95.2 0.13 2.8E-06 37.9 7.1 60 56-120 9-68 (326)
150 PF00564 PB1: PB1 domain; Int 95.2 0.13 2.9E-06 29.8 6.1 46 43-89 2-48 (84)
151 COG2104 ThiS Sulfur transfer p 95.1 0.31 6.8E-06 27.7 7.6 59 55-118 10-68 (68)
152 cd01811 OASL_repeat1 2'-5' oli 95.0 0.043 9.4E-07 31.7 3.3 36 5-40 38-78 (80)
153 smart00455 RBD Raf-like Ras-bi 94.9 0.18 3.9E-06 28.8 5.8 49 45-93 2-52 (70)
154 PRK11130 moaD molybdopterin sy 94.6 0.48 1E-05 27.6 7.3 58 56-118 18-81 (81)
155 cd05992 PB1 The PB1 domain is 94.3 0.27 5.8E-06 28.3 5.9 45 45-90 3-48 (81)
156 cd06396 PB1_NBR1 The PB1 domai 94.1 0.33 7.1E-06 28.6 5.8 40 45-87 3-44 (81)
157 TIGR02958 sec_mycoba_snm4 secr 94.0 0.44 9.6E-06 36.8 7.9 71 44-115 4-81 (452)
158 KOG2086 Protein tyrosine phosp 93.9 0.2 4.3E-06 37.6 5.7 66 41-106 304-373 (380)
159 cd06411 PB1_p51 The PB1 domain 93.5 0.24 5.3E-06 28.9 4.4 36 54-89 8-43 (78)
160 cd06410 PB1_UP2 Uncharacterize 93.5 0.49 1.1E-05 28.8 5.9 40 47-87 17-56 (97)
161 KOG2561 Adaptor protein NUB1, 93.3 0.016 3.6E-07 44.2 -0.8 60 55-114 52-111 (568)
162 PF10209 DUF2340: Uncharacteri 93.1 0.28 6.1E-06 31.1 4.6 59 54-112 16-106 (122)
163 cd06398 PB1_Joka2 The PB1 doma 92.9 0.68 1.5E-05 27.9 5.9 66 50-115 7-88 (91)
164 cd00196 UBQ Ubiquitin-like pro 92.7 0.2 4.3E-06 26.0 3.2 37 1-37 32-68 (69)
165 cd01766 Ufm1 Urm1-like ubiquit 92.5 1.2 2.7E-05 25.7 6.4 63 56-118 19-82 (82)
166 PF02196 RBD: Raf-like Ras-bin 92.3 1.3 2.8E-05 25.3 8.5 53 45-97 3-57 (71)
167 PLN02560 enoyl-CoA reductase 91.8 0.19 4E-06 36.9 3.0 35 3-37 41-82 (308)
168 KOG2689 Predicted ubiquitin re 91.4 0.88 1.9E-05 32.8 5.9 71 41-111 209-284 (290)
169 cd06397 PB1_UP1 Uncharacterize 91.2 1 2.3E-05 26.4 5.1 52 50-101 7-63 (82)
170 COG5100 NPL4 Nuclear pore prot 90.9 1.1 2.3E-05 34.3 6.2 70 43-113 1-78 (571)
171 PF14732 UAE_UbL: Ubiquitin/SU 90.5 1 2.2E-05 26.8 4.8 56 57-112 2-67 (87)
172 cd01787 GRB7_RA RA (RAS-associ 90.3 2.2 4.8E-05 25.4 6.0 44 43-86 3-47 (85)
173 cd01764 Urm1 Urm1-like ubuitin 90.2 1.6 3.5E-05 26.3 5.6 56 61-118 27-94 (94)
174 PF14533 USP7_C2: Ubiquitin-sp 90.2 4.5 9.8E-05 28.0 8.5 60 42-101 20-90 (213)
175 PF00788 RA: Ras association ( 90.1 2.3 5.1E-05 24.8 6.3 42 45-86 5-52 (93)
176 PF02017 CIDE-N: CIDE-N domain 89.9 1.5 3.2E-05 25.7 5.0 38 63-100 21-60 (78)
177 PTZ00380 microtubule-associate 89.8 0.45 9.8E-06 30.2 3.0 61 40-100 25-88 (121)
178 KOG1769 Ubiquitin-like protein 89.1 0.92 2E-05 27.7 3.9 39 1-39 55-93 (99)
179 cd01768 RA RA (Ras-associating 88.6 3.2 6.9E-05 24.2 6.0 35 52-86 12-48 (87)
180 cd01818 TIAM1_RBD Ubiquitin do 88.2 3.3 7.1E-05 24.1 5.5 40 47-86 4-43 (77)
181 PF11069 DUF2870: Protein of u 87.7 0.72 1.6E-05 28.1 2.8 30 8-38 3-32 (98)
182 cd01777 SNX27_RA Ubiquitin dom 87.6 2.5 5.4E-05 25.2 5.0 42 43-84 2-43 (87)
183 KOG3439 Protein conjugation fa 87.5 3.4 7.3E-05 25.8 5.6 50 42-91 30-83 (116)
184 smart00266 CAD Domains present 87.4 2.3 4.9E-05 24.7 4.6 48 62-111 18-67 (74)
185 PF08817 YukD: WXG100 protein 87.2 0.65 1.4E-05 26.9 2.4 25 11-35 54-78 (79)
186 cd01775 CYR1_RA Ubiquitin doma 86.6 5.4 0.00012 24.3 6.7 43 44-86 4-47 (97)
187 PF08825 E2_bind: E2 binding d 85.9 1.3 2.9E-05 26.2 3.2 55 57-112 1-69 (84)
188 cd06539 CIDE_N_A CIDE_N domain 85.8 2.9 6.4E-05 24.4 4.5 48 62-111 20-69 (78)
189 KOG4146 Ubiquitin-like protein 85.7 5.9 0.00013 24.0 8.0 56 62-118 35-101 (101)
190 PF12436 USP7_ICP0_bdg: ICP0-b 85.6 1.1 2.3E-05 31.9 3.2 73 42-114 68-152 (249)
191 cd01817 RGS12_RBD Ubiquitin do 85.2 5.4 0.00012 23.0 7.6 47 47-93 4-52 (73)
192 KOG4495 RNA polymerase II tran 85.0 0.29 6.2E-06 29.8 0.1 27 3-29 38-66 (110)
193 KOG4250 TANK binding protein k 84.9 3.3 7E-05 33.8 5.8 42 51-92 323-364 (732)
194 cd01615 CIDE_N CIDE_N domain, 84.9 3.4 7.3E-05 24.2 4.5 48 62-111 20-69 (78)
195 PRK01777 hypothetical protein; 84.7 6.7 0.00015 23.7 8.4 65 42-115 3-77 (95)
196 KOG1872 Ubiquitin-specific pro 84.5 1.3 2.9E-05 34.2 3.4 39 1-39 38-76 (473)
197 PF14451 Ub-Mut7C: Mut7-C ubiq 84.0 6.5 0.00014 23.1 6.2 54 52-114 22-76 (81)
198 smart00314 RA Ras association 83.2 7 0.00015 22.8 6.3 51 51-101 14-72 (90)
199 PF02991 Atg8: Autophagy prote 83.1 3.3 7.3E-05 25.5 4.2 46 56-101 36-82 (104)
200 cd06536 CIDE_N_ICAD CIDE_N dom 82.9 4.1 8.9E-05 23.9 4.3 48 62-111 20-71 (80)
201 cd01611 GABARAP Ubiquitin doma 82.8 6.9 0.00015 24.4 5.7 58 55-113 43-105 (112)
202 PF06234 TmoB: Toluene-4-monoo 82.4 8.2 0.00018 23.0 6.7 70 45-114 6-84 (85)
203 KOG4572 Predicted DNA-binding 82.1 4 8.8E-05 34.1 5.4 62 51-112 3-68 (1424)
204 PF11834 DUF3354: Domain of un 81.6 3.5 7.5E-05 23.5 3.6 44 62-111 25-68 (69)
205 PF00276 Ribosomal_L23: Riboso 81.4 5.1 0.00011 24.0 4.5 40 53-92 21-61 (91)
206 cd01612 APG12_C Ubiquitin-like 81.4 9 0.0002 22.8 5.9 58 54-112 17-79 (87)
207 PF10407 Cytokin_check_N: Cdc1 81.1 8.3 0.00018 22.2 5.9 60 54-114 4-70 (73)
208 PF03671 Ufm1: Ubiquitin fold 80.7 8.4 0.00018 22.2 4.9 58 54-111 17-75 (76)
209 PF10790 DUF2604: Protein of U 80.5 2.9 6.2E-05 23.6 2.9 37 3-39 35-72 (76)
210 PF00794 PI3K_rbd: PI3-kinase 80.5 11 0.00023 23.0 6.8 73 40-112 14-100 (106)
211 cd06537 CIDE_N_B CIDE_N domain 80.1 6.3 0.00014 23.2 4.4 48 62-111 20-68 (81)
212 KOG2507 Ubiquitin regulatory p 79.4 5.1 0.00011 30.9 4.8 76 41-116 313-393 (506)
213 KOG0007 Splicing factor 3a, su 79.0 1 2.2E-05 33.5 1.1 50 49-98 289-339 (341)
214 cd01776 Rin1_RA Ubiquitin doma 78.8 6.6 0.00014 23.3 4.2 43 53-95 14-61 (87)
215 cd06538 CIDE_N_FSP27 CIDE_N do 78.1 7.9 0.00017 22.7 4.4 48 62-111 20-68 (79)
216 PRK05738 rplW 50S ribosomal pr 77.3 7.2 0.00016 23.4 4.3 39 52-90 20-59 (92)
217 PF09138 Urm1: Urm1 (Ubiquitin 76.5 2.3 5E-05 25.9 2.0 64 53-118 18-96 (96)
218 PF14533 USP7_C2: Ubiquitin-sp 76.2 3 6.4E-05 28.9 2.7 30 52-81 132-161 (213)
219 PF08337 Plexin_cytopl: Plexin 75.8 15 0.00033 29.3 6.7 73 43-115 190-290 (539)
220 COG1977 MoaD Molybdopterin con 75.4 10 0.00022 22.2 4.6 54 61-118 26-84 (84)
221 PF11069 DUF2870: Protein of u 75.0 5 0.00011 24.5 3.1 30 84-114 3-32 (98)
222 TIGR03636 L23_arch archaeal ri 74.6 9.2 0.0002 22.3 4.1 34 53-86 15-48 (77)
223 PF02192 PI3K_p85B: PI3-kinase 74.3 5.8 0.00013 23.2 3.2 23 55-77 2-24 (78)
224 PF06487 SAP18: Sin3 associate 74.2 11 0.00025 23.8 4.8 61 53-113 37-120 (120)
225 PF08783 DWNN: DWNN domain; I 73.8 8.1 0.00018 22.3 3.7 32 54-85 11-44 (74)
226 cd06404 PB1_aPKC PB1 domain is 72.4 18 0.00038 21.5 5.9 40 50-89 7-47 (83)
227 KOG1364 Predicted ubiquitin re 72.4 3.9 8.5E-05 30.6 2.6 65 44-108 279-349 (356)
228 PRK14548 50S ribosomal protein 70.1 14 0.0003 21.9 4.2 34 53-86 22-55 (84)
229 cd01666 TGS_DRG_C TGS_DRG_C: 69.6 19 0.00041 20.7 5.5 52 55-112 17-74 (75)
230 COG0089 RplW Ribosomal protein 68.5 16 0.00035 22.1 4.3 35 52-86 21-55 (94)
231 cd01782 AF6_RA_repeat1 Ubiquit 68.3 26 0.00057 21.8 6.6 46 41-86 22-74 (112)
232 KOG2378 cAMP-regulated guanine 67.6 35 0.00075 26.9 6.8 77 35-114 228-311 (573)
233 KOG3391 Transcriptional co-rep 66.9 5.8 0.00013 25.8 2.2 61 55-116 54-138 (151)
234 KOG4598 Putative ubiquitin-spe 66.5 8.2 0.00018 32.0 3.5 56 54-111 878-939 (1203)
235 smart00144 PI3K_rbd PI3-kinase 65.8 29 0.00062 21.3 8.2 74 41-114 16-104 (108)
236 smart00143 PI3K_p85B PI3-kinas 65.3 9.7 0.00021 22.3 2.8 23 55-77 2-24 (78)
237 KOG3483 Uncharacterized conser 64.6 26 0.00056 20.4 5.5 63 56-118 30-93 (94)
238 PF02824 TGS: TGS domain; Int 64.6 21 0.00046 19.4 5.7 59 45-112 1-59 (60)
239 CHL00030 rpl23 ribosomal prote 63.1 23 0.00051 21.3 4.3 34 53-86 20-53 (93)
240 PTZ00490 Ferredoxin superfamil 58.2 35 0.00075 22.3 4.8 31 39-69 32-62 (143)
241 cd06535 CIDE_N_CAD CIDE_N doma 56.9 35 0.00076 19.9 4.1 47 62-111 20-68 (77)
242 KOG2660 Locus-specific chromos 56.9 8.5 0.00018 28.6 1.9 47 55-101 166-214 (331)
243 PF08154 NLE: NLE (NUC135) dom 55.6 34 0.00074 18.9 6.5 40 55-94 18-59 (65)
244 PF04110 APG12: Ubiquitin-like 54.7 44 0.00096 19.9 4.9 47 54-100 17-65 (87)
245 PRK12280 rplW 50S ribosomal pr 53.3 40 0.00086 22.5 4.5 38 53-90 23-61 (158)
246 COG5131 URM1 Ubiquitin-like pr 53.2 48 0.0011 19.9 6.9 67 52-118 17-96 (96)
247 PF08299 Bac_DnaA_C: Bacterial 52.5 6.3 0.00014 22.3 0.5 20 64-83 1-20 (70)
248 PRK05841 flgE flagellar hook p 52.0 27 0.00058 28.3 4.1 41 40-80 246-295 (603)
249 PF14847 Ras_bdg_2: Ras-bindin 51.8 55 0.0012 20.2 5.4 45 45-89 3-50 (105)
250 PF11620 GABP-alpha: GA-bindin 50.6 53 0.0011 19.6 4.2 34 5-38 31-64 (88)
251 PF13699 DUF4157: Domain of un 49.8 35 0.00075 19.8 3.4 46 66-111 4-49 (79)
252 PF11816 DUF3337: Domain of un 49.4 58 0.0013 24.2 5.3 56 61-116 256-329 (331)
253 smart00760 Bac_DnaA_C Bacteria 49.1 9.1 0.0002 20.8 0.8 20 64-83 1-20 (60)
254 PF09469 Cobl: Cordon-bleu ubi 48.6 13 0.00028 21.7 1.5 34 71-104 2-38 (79)
255 PF01376 Enterotoxin_b: Heat-l 47.1 39 0.00085 20.0 3.3 31 44-74 37-67 (102)
256 PF03658 Ub-RnfH: RnfH family 46.1 62 0.0014 19.1 6.8 57 54-115 15-74 (84)
257 PRK10872 relA (p)ppGpp synthet 45.0 81 0.0018 26.4 5.9 62 44-114 405-466 (743)
258 PF09269 DUF1967: Domain of un 43.9 14 0.00031 20.8 1.1 16 96-111 47-62 (69)
259 PRK09570 rpoH DNA-directed RNA 43.4 62 0.0013 19.0 3.8 45 64-114 19-63 (79)
260 PF12053 DUF3534: Domain of un 43.3 47 0.001 21.8 3.6 70 43-114 1-80 (145)
261 TIGR02008 fdx_plant ferredoxin 42.4 74 0.0016 18.9 4.4 26 43-68 3-28 (97)
262 PF01191 RNA_pol_Rpb5_C: RNA p 42.3 68 0.0015 18.5 3.8 46 65-116 17-62 (74)
263 PTZ00191 60S ribosomal protein 42.1 61 0.0013 21.3 4.0 34 53-86 83-116 (145)
264 cd01784 rasfadin_RA Ubiquitin- 41.9 76 0.0017 19.0 4.2 35 52-86 12-48 (87)
265 TIGR03595 Obg_CgtA_exten Obg f 40.4 19 0.00041 20.3 1.3 18 95-112 46-63 (69)
266 PF04126 Cyclophil_like: Cyclo 40.3 29 0.00063 21.8 2.3 29 43-72 1-29 (120)
267 KOG1654 Microtubule-associated 40.0 88 0.0019 19.6 4.2 58 40-97 26-90 (116)
268 KOG4261 Talin [Cytoskeleton] 39.7 33 0.00071 28.8 2.9 66 12-80 57-122 (1003)
269 KOG4147 Uncharacterized conser 38.3 33 0.00071 21.5 2.1 54 58-111 28-110 (127)
270 PF10610 Tafi-CsgC: Thin aggre 38.2 24 0.00053 21.8 1.6 20 100-119 72-91 (106)
271 PF03931 Skp1_POZ: Skp1 family 37.3 33 0.00072 18.6 1.9 32 43-74 1-32 (62)
272 PF01187 MIF: Macrophage migra 36.8 43 0.00092 20.6 2.6 25 64-88 75-99 (114)
273 PF12949 HeH: HeH/LEM domain; 36.6 27 0.00058 17.1 1.3 15 61-75 2-16 (35)
274 PF02037 SAP: SAP domain; Int 36.1 42 0.0009 16.1 2.0 19 62-81 3-21 (35)
275 PF01577 Peptidase_S30: Potyvi 35.0 1.6E+02 0.0034 20.5 6.1 74 43-117 150-226 (245)
276 COG0139 HisI Phosphoribosyl-AM 34.7 44 0.00095 20.9 2.3 75 42-119 18-96 (111)
277 cd01778 RASSF1_RA Ubiquitin-li 33.6 1.1E+02 0.0025 18.6 5.1 37 50-86 14-52 (96)
278 TIGR00691 spoT_relA (p)ppGpp s 33.4 1.9E+02 0.004 24.0 6.3 64 43-115 360-423 (683)
279 KOG3751 Growth factor receptor 33.3 1.6E+02 0.0034 23.8 5.5 46 41-86 187-233 (622)
280 cd01783 DAGK_delta_RA Ubiquiti 33.0 1.2E+02 0.0026 18.5 4.3 32 55-86 19-53 (97)
281 COG3142 CutC Uncharacterized p 33.0 32 0.00069 24.5 1.7 16 105-120 50-65 (241)
282 PF04023 FeoA: FeoA domain; I 32.5 39 0.00085 18.7 1.8 19 96-114 26-44 (74)
283 COG1163 DRG Predicted GTPase [ 32.5 2.1E+02 0.0046 21.7 5.9 70 43-114 291-365 (365)
284 KOG4842 Protein involved in si 31.5 35 0.00076 24.7 1.7 66 52-117 12-101 (278)
285 KOG4091 Transcription factor [ 31.2 1.6E+02 0.0035 23.2 5.3 74 42-116 372-452 (463)
286 PRK11572 copper homeostasis pr 31.0 39 0.00084 24.2 1.9 13 108-120 53-65 (248)
287 TIGR02037 degP_htrA_DO peripla 31.0 2.4E+02 0.0053 21.5 6.4 38 1-38 274-313 (428)
288 PF05402 PqqD: Coenzyme PQQ sy 30.7 36 0.00077 18.5 1.4 23 59-81 26-48 (68)
289 PRK09908 xanthine dehydrogenas 30.7 86 0.0019 20.9 3.4 35 42-78 6-40 (159)
290 PF13180 PDZ_2: PDZ domain; PD 30.5 83 0.0018 17.7 3.0 41 74-114 28-70 (82)
291 cd01816 Raf_RBD Ubiquitin doma 30.3 1.2E+02 0.0025 17.6 5.7 42 45-86 2-43 (74)
292 PTZ00397 macrophage migration 30.3 77 0.0017 19.4 3.0 55 34-88 38-101 (116)
293 PTZ00450 macrophage migration 30.0 81 0.0018 19.6 3.0 61 29-89 33-102 (113)
294 cd02413 40S_S3_KH K homology R 30.0 1.2E+02 0.0026 17.6 5.6 44 41-86 30-73 (81)
295 PF06622 SepQ: SepQ protein; 29.9 2.2E+02 0.0047 20.6 6.4 51 61-111 139-191 (305)
296 PF01282 Ribosomal_S24e: Ribos 29.3 1E+02 0.0022 18.0 3.3 26 61-86 11-36 (84)
297 cd01668 TGS_RelA_SpoT TGS_RelA 29.0 92 0.002 16.0 6.7 55 49-112 5-59 (60)
298 cd05484 retropepsin_like_LTR_2 28.6 90 0.0019 18.0 3.0 44 50-93 7-54 (91)
299 PF02563 Poly_export: Polysacc 28.1 98 0.0021 17.7 3.0 55 22-78 8-69 (82)
300 PF03932 CutC: CutC family; I 27.6 42 0.0009 23.2 1.5 16 105-120 49-64 (201)
301 PRK13605 endoribonuclease SymE 27.1 87 0.0019 19.7 2.7 38 45-83 58-96 (113)
302 PF04921 XAP5: XAP5, circadian 27.1 2.4E+02 0.0052 20.2 5.5 58 43-100 99-166 (239)
303 PF13439 Glyco_transf_4: Glyco 26.7 75 0.0016 19.8 2.6 26 66-92 148-173 (177)
304 KOG3309 Ferredoxin [Energy pro 26.5 1.5E+02 0.0032 19.8 3.8 30 40-69 41-70 (159)
305 KOG4361 BCL2-associated athano 26.2 36 0.00079 25.6 1.1 59 54-112 72-136 (344)
306 PF02594 DUF167: Uncharacteris 26.0 75 0.0016 18.3 2.2 58 32-89 5-66 (77)
307 PF09581 Spore_III_AF: Stage I 25.9 44 0.00095 22.3 1.4 25 62-86 163-187 (188)
308 cd06919 Asp_decarbox Aspartate 25.6 26 0.00056 21.9 0.2 37 81-117 15-51 (111)
309 PRK08453 fliD flagellar cappin 25.5 82 0.0018 26.0 3.0 25 50-74 135-159 (673)
310 PF09358 UBA_e1_C: Ubiquitin-a 24.0 95 0.0021 19.6 2.6 27 56-82 36-62 (125)
311 COG2080 CoxS Aerobic-type carb 23.7 1.3E+02 0.0029 20.0 3.3 54 45-99 4-64 (156)
312 PF12663 DUF3788: Protein of u 23.6 1.2E+02 0.0025 19.4 3.0 25 51-75 108-132 (133)
313 PF14420 Clr5: Clr5 domain 23.3 1E+02 0.0022 16.3 2.3 23 59-81 17-39 (54)
314 TIGR00223 panD L-aspartate-alp 23.2 33 0.00071 22.0 0.4 40 80-119 15-54 (126)
315 PF07971 Glyco_hydro_92: Glyco 23.1 2.5E+02 0.0055 22.3 5.3 77 22-113 422-498 (502)
316 PF13579 Glyco_trans_4_4: Glyc 23.1 71 0.0015 19.5 1.9 21 68-89 140-160 (160)
317 PF11061 DUF2862: Protein of u 23.1 63 0.0014 18.1 1.4 24 95-118 29-52 (64)
318 PF13592 HTH_33: Winged helix- 23.0 98 0.0021 16.6 2.2 21 61-81 3-23 (60)
319 smart00513 SAP Putative DNA-bi 23.0 1E+02 0.0022 14.5 2.5 18 62-80 3-20 (35)
320 PF12143 PPO1_KFDV: Protein of 22.9 84 0.0018 20.2 2.2 26 94-119 93-118 (130)
321 PRK09555 feoA ferrous iron tra 22.8 1E+02 0.0023 17.5 2.4 21 96-116 24-44 (74)
322 KOG0526 Nucleosome-binding fac 22.8 1.8E+02 0.0039 23.5 4.3 50 40-89 57-106 (615)
323 PRK11092 bifunctional (p)ppGpp 22.8 2.4E+02 0.0051 23.6 5.2 62 44-114 387-448 (702)
324 PRK06959 putative threonine-ph 22.6 1.1E+02 0.0024 22.4 3.1 29 61-90 52-80 (339)
325 PF04017 DUF366: Domain of unk 22.6 24 0.00052 24.1 -0.4 31 6-36 7-37 (183)
326 cd05883 Ig2_Necl-2 Second immu 22.4 1.3E+02 0.0028 17.5 2.8 19 78-96 12-30 (82)
327 TIGR02609 doc_partner putative 22.2 83 0.0018 17.8 1.9 21 94-114 15-35 (74)
328 COG3760 Uncharacterized conser 22.0 1.2E+02 0.0026 20.2 2.8 33 43-77 46-78 (164)
329 PF11604 CusF_Ec: Copper bindi 21.9 89 0.0019 17.5 2.0 19 101-119 41-59 (70)
330 PF03459 TOBE: TOBE domain; I 21.9 98 0.0021 16.4 2.1 20 96-115 40-59 (64)
331 PLN02593 adrenodoxin-like ferr 21.9 2.1E+02 0.0046 17.7 4.4 27 43-69 1-27 (117)
332 PF11816 DUF3337: Domain of un 21.8 76 0.0017 23.5 2.1 36 3-38 289-327 (331)
333 COG2002 AbrB Regulators of sta 21.7 72 0.0016 18.7 1.6 31 88-118 13-43 (89)
334 COG2029 Uncharacterized conser 21.6 35 0.00075 23.1 0.2 27 85-111 13-39 (189)
335 PF08766 DEK_C: DEK C terminal 21.6 48 0.0011 17.5 0.8 21 62-82 20-40 (54)
336 smart00806 AIP3 Actin interact 21.6 3.1E+02 0.0067 21.5 5.2 61 51-114 5-74 (426)
337 PRK11347 antitoxin ChpS; Provi 21.3 89 0.0019 18.3 1.9 21 94-114 17-37 (83)
338 cd05736 Ig2_Follistatin_like S 21.2 1.6E+02 0.0034 16.0 3.2 17 77-93 9-25 (76)
339 TIGR02281 clan_AA_DTGA clan AA 21.2 2.2E+02 0.0047 17.6 4.1 42 39-81 8-49 (121)
340 PF04014 Antitoxin-MazE: Antid 21.2 1.2E+02 0.0026 15.3 2.2 18 97-114 15-32 (47)
341 KOG4013 Predicted Cu2+ homeost 21.0 75 0.0016 22.2 1.8 14 107-120 60-73 (255)
342 PRK12765 flagellar capping pro 20.8 2.5E+02 0.0054 22.9 4.9 34 41-75 131-164 (595)
343 PF14538 Raptor_N: Raptor N-te 20.7 2.6E+02 0.0057 18.4 4.3 36 55-90 64-100 (154)
344 KOG0013 Uncharacterized conser 20.7 1.3E+02 0.0028 21.2 2.8 34 4-37 184-217 (231)
345 cd06405 PB1_Mekk2_3 The PB1 do 20.4 2E+02 0.0043 16.8 4.1 31 50-80 7-37 (79)
346 COG5560 UBP12 Ubiquitin C-term 20.3 4E+02 0.0086 22.4 5.8 46 44-89 457-508 (823)
347 PF14268 YoaP: YoaP-like 20.3 1E+02 0.0022 15.9 1.8 20 74-93 14-33 (44)
348 PRK13552 frdB fumarate reducta 20.3 2.4E+02 0.0051 20.0 4.2 25 53-77 24-48 (239)
349 PF11305 DUF3107: Protein of u 20.2 1.9E+02 0.0042 16.7 5.3 43 43-86 1-43 (74)
350 PF13085 Fer2_3: 2Fe-2S iron-s 20.0 1.4E+02 0.0031 18.5 2.7 49 54-102 20-80 (110)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.91 E-value=1.5e-23 Score=129.63 Aligned_cols=96 Identities=44% Similarity=0.642 Sum_probs=91.9
Q ss_pred cccccccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCC
Q 038333 23 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 102 (120)
Q Consensus 23 ~~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~ 102 (120)
-.|++..-+++++.++..+.|+|+|+..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+.+|++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~ 87 (103)
T cd01802 8 PFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87 (103)
T ss_pred CccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcC
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEcCCC
Q 038333 103 IQKESTLHLVLRLRGG 118 (120)
Q Consensus 103 i~~g~~i~v~~~~~gG 118 (120)
|+++++|+++++++||
T Consensus 88 I~~~stL~l~~~l~GG 103 (103)
T cd01802 88 ISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCEEEEEEecCCC
Confidence 9999999999999997
No 2
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.88 E-value=5.3e-22 Score=116.11 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=70.9
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|+|+.. +++.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+.+|++|+|++++++++++|++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 68899873 789999999999999999999999999999999999999999999999999999999999999998
No 3
>PTZ00044 ubiquitin; Provisional
Probab=99.88 E-value=6.9e-22 Score=116.05 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.3
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|+|+..+|+.+.+++++++||++||.+|++..|+|++.|+|+|+|+.|.|+.+|++|+++++++|+++++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 4
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.87 E-value=1.1e-21 Score=115.05 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.2
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++|++++|++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.87 E-value=2e-21 Score=113.85 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.1
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|.|+..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+.+|++|++++|++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 6
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.86 E-value=2.7e-21 Score=114.14 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=73.4
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+|+|+|+...|+.+.+++++++||++||++|++..++|+++|+|.|.|+.|.|+ +|++|||++|++|+++..++||
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 589999999999999999999999999999999999999999999999999998 9999999999999999999887
No 7
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.86 E-value=3.2e-21 Score=112.76 Aligned_cols=74 Identities=35% Similarity=0.640 Sum_probs=71.3
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
|+|+|+..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+.+|++|||+++++|+++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998853
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.86 E-value=3.2e-21 Score=112.77 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=71.8
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|+.+.|+.+.+++++++||++||++|++..|+|++.|+|.|+|+.|.|+.+|++|||++++++++..++.||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999987
No 9
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.83 E-value=4.7e-20 Score=107.43 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=68.3
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
.|.|+|++..|+.+.+++++++||++||++|++..|+|+++|||.|+|+.|.|+.+|++|||++|++|++.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 38899999999999999999999999999999999999999999999999999999999999999999986
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.83 E-value=4.4e-20 Score=108.91 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.2
Q ss_pred EEEEEEeCCCCE-EEEE-EcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 43 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 43 m~i~v~~~~g~~-~~i~-v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
|+|+|+..+|+. +.++ +++++||++||++|++..|+|++.|+|+|+|+.|.|+.+|++|||+++++|++++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999986 6885 8999999999999999999999999999999999999999999999999999999875
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.82 E-value=1.3e-19 Score=106.54 Aligned_cols=74 Identities=38% Similarity=0.692 Sum_probs=70.9
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCC--CCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~--~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
|+|+|+..+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|.|+.+|++||+++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999999999999999999999999999999 99999999999999999999999999999999988754
No 12
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.81 E-value=2e-19 Score=104.32 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.2
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|.|+.+|++||+++|+++++..|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999999999999998764
No 13
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.81 E-value=2e-19 Score=105.68 Aligned_cols=70 Identities=33% Similarity=0.669 Sum_probs=67.4
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
.+|+++.+++++++||++||.+|++.+|+|++.|+|+|+|+.|.|+.+|++|+|++|++|+++++++||+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4688999999999999999999999999999999999999999999999999999999999999999985
No 14
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.80 E-value=3.4e-19 Score=102.65 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=65.5
Q ss_pred EeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 48 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 48 ~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
+..+|+.+.+++++++||++||++|++..++|++.|+|+|+|+.|.|+.+|++|||++|++|++.+|.+
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 457889999999999999999999999999999999999999999999999999999999999998864
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.80 E-value=2.9e-19 Score=103.33 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.5
Q ss_pred EEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 46 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 46 ~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
.|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|++|+|+.+|.+|+|+++++|++++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 46888999999999999999999999999999999999999999999999999999999999999986
No 16
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.80 E-value=3.3e-19 Score=103.14 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=66.9
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|++|.|+.+|++|+|+++++++++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 4688899999999999999999999999999999999999999999999999999999999999999865
No 17
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.79 E-value=5e-19 Score=104.93 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=69.7
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEE--EeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L--~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+| .|+|+.|.|+.+|++||+++|++|+++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 8999999999999999999999999999999999999999999 78999999999999999999999999988
No 18
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.79 E-value=2e-18 Score=103.88 Aligned_cols=80 Identities=18% Similarity=0.446 Sum_probs=77.0
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.+..|+|.|++.+|+...+.|.+++|+..|+++++++.|+|++.++|+|+|+.|.++.|+.+|++++||+|+++.+++||
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999998
No 19
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.78 E-value=1.9e-18 Score=100.19 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=66.6
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
|+|+|+..+|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|.|+.+|++||+++|++|++++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46889999887 589999999999999999999999999999999999999999999999999999999865
No 20
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.75 E-value=6.8e-18 Score=97.67 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=65.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
|+|+|+.. |+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|.|+.+|.+||+++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57889976 88899999999999999999999999999999999999999999999999999999998863
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.75 E-value=7.9e-18 Score=97.63 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=63.4
Q ss_pred EEEEeC-CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCC-CccccCCCCCCCEEEEE
Q 038333 45 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 112 (120)
Q Consensus 45 i~v~~~-~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~-~~L~~~~i~~g~~i~v~ 112 (120)
|+|+.. +|+.+.+++++++||++||.+|++..|+|++.|+|+|+|+.|.|+ .+|++|||++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467888 899999999999999999999999999999999999999999887 68999999999999874
No 22
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.74 E-value=9.7e-18 Score=97.94 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=64.5
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe---CCEEcCCCCccccCCCCCCCEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~---~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
|.|+|+ ++|+.+.+++++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|+|++|+.|+++
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 467888 56789999999999999999999999999999999996 8999999999999999999999886
No 23
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.73 E-value=2.6e-17 Score=96.68 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=64.2
Q ss_pred CEEEEEEeCCCCEEEE--EEcCCCCHHHHHHHHHhhcC--CCCCceEEEeCCEEcCCCCccccCC--CCCCCEEEEEE
Q 038333 42 GMQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 113 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i--~v~~~~tV~~LK~~i~~~~~--~~~~~~~L~~~g~~L~d~~~L~~~~--i~~g~~i~v~~ 113 (120)
+|.|+|++++++.+.+ ++++++||++||++|++..+ .|++.|+|+|+|+.|.|+.+|++|. +.++.+||++.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 4789999999988555 55899999999999999885 5579999999999999999999996 99999999975
No 24
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.68 E-value=1.9e-16 Score=89.42 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=60.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 107 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~ 107 (120)
|+|+|+..+ +.+.+++++++||++||.+|++.+++|+++|+|+|+|+.|.|+.+|++||+++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999988 7899999999999999999999999999999999999999999999999999885
No 25
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.6e-17 Score=100.92 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=73.2
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+++++...|++..+++.|++||..+|.+|....|+|++.|+|.|+|+.|.|+.||++|||+..|+++++.|++||
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 4677888999999999999999999999999999999999999999999999999999999999999999999998
No 26
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1e-15 Score=113.25 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.1
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC---CCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~---~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
|+|+||..+|+++.++|++++||.+||++|++..| +|+++|+|+|+|+.|.|+.+|.+|+|+++++|+++++-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 78999999999999999999999999999999998 99999999999999999999999999999999998764
No 27
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.5e-16 Score=85.51 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=66.7
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
|.|.++..+|+...++++|+++|+.+|+++++..|+||..|||+|.|+.++|+.+.++|++..||+++++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999863
No 28
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.61 E-value=4.5e-15 Score=86.81 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=58.5
Q ss_pred EeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcC-CCCccccCCCC-CCCEEEEEE
Q 038333 48 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 113 (120)
Q Consensus 48 ~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~-d~~~L~~~~i~-~g~~i~v~~ 113 (120)
+...|.+..+++++++||++||.+|+++.|+|++.|+| |.|+.|. |+.+|++||++ +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34567889999999999999999999999999999999 9998885 77999999998 889998864
No 29
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.1e-15 Score=98.89 Aligned_cols=77 Identities=95% Similarity=1.311 Sum_probs=74.4
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
|+|+|+...+++..+++.+++||..+|.+|+...|||++.|+++|.|+.|.|+++|++|+|+..+++++.++++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999983
No 30
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.58 E-value=9.6e-15 Score=83.49 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.0
Q ss_pred EEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 47 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 47 v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
|+..+|+.+.+.+++++||++||++|++.+++|+++|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5667789999999999999999999999999999999999999999999999999999999998864
No 31
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.58 E-value=1.3e-14 Score=84.09 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
|+|.|+..+|+.+.+.+.+++++..|.+.+++..++|+ +.++|.|+|+.|+++.|++++|+++|++|.|.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999999864
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.53 E-value=1.4e-14 Score=84.15 Aligned_cols=56 Identities=30% Similarity=0.506 Sum_probs=50.0
Q ss_pred EEcC-CCCHHHHHHHHHhhc--CC-CCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 58 EVES-SDTIDNVKAKIQDKE--GI-PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 58 ~v~~-~~tV~~LK~~i~~~~--~~-~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
+++| ++||++||++|++.. ++ +++.|+|+|.|+.|.|+.+|++|||++|++|+++.
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 3444 679999999999996 46 48999999999999999999999999999999875
No 33
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.50 E-value=4.7e-14 Score=105.59 Aligned_cols=75 Identities=36% Similarity=0.559 Sum_probs=71.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
..++|+||+.++ ++.+.|..+.||.+||++|+.+++.+++.++|+|.|+.|+|+.||..|||+||.+||++++..
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 458899999987 799999999999999999999999999999999999999999999999999999999999854
No 34
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.50 E-value=9e-14 Score=83.86 Aligned_cols=63 Identities=27% Similarity=0.305 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcC-CCCccccCCCCCCCEEEEEEEcC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~-d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
...+.|++++||.+||.+|.+.++++|++|+|+++|+.|. |.+||++|||.+++.|.+.++.+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 4678899999999999999999999999999999999886 66999999999999999988654
No 35
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.48 E-value=9.8e-14 Score=85.79 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=65.8
Q ss_pred CCEEEEEEeCCCCE-EEEEEcCCCCHHHHHHHHHhhcC-------CCCCceEEEeCCEEcCCCCccccCC------CCCC
Q 038333 41 GGMQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYN------IQKE 106 (120)
Q Consensus 41 ~~m~i~v~~~~g~~-~~i~v~~~~tV~~LK~~i~~~~~-------~~~~~~~L~~~g~~L~d~~~L~~~~------i~~g 106 (120)
+.+.|.++..+|.. =+..+++++||++||++|++.++ .+++.|+|+|.|+.|.|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 45788888888854 46889999999999999997774 5599999999999999999999999 6777
Q ss_pred CEEEEEEEcC
Q 038333 107 STLHLVLRLR 116 (120)
Q Consensus 107 ~~i~v~~~~~ 116 (120)
.++||++|..
T Consensus 83 ~TmHvvlr~~ 92 (113)
T cd01814 83 ITMHVVVQPP 92 (113)
T ss_pred eEEEEEecCC
Confidence 8999998864
No 36
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.43 E-value=2e-12 Score=77.19 Aligned_cols=71 Identities=21% Similarity=0.382 Sum_probs=58.2
Q ss_pred EEEEEEeCC-CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCE-----Ec-CCCCccccCCCCCCCEEEEEE
Q 038333 43 MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 43 m~i~v~~~~-g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~-----~L-~d~~~L~~~~i~~g~~i~v~~ 113 (120)
+.|.|.+.. ....+.++++++||++||++++..+|+|++.|+|. |.++ .| +|..+|++||+++|++|+|.=
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 345555432 34456679999999999999999999999999995 7777 45 688999999999999999863
No 37
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.42 E-value=5.8e-13 Score=95.50 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.9
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC--CCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~--~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
|+|+||+..++++.+++.|++||.++|++|+...| +|++.|+|+|+|+.|.|+.++.+|++++++.|.+++.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999988754
No 38
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.36 E-value=4.9e-12 Score=75.93 Aligned_cols=70 Identities=27% Similarity=0.570 Sum_probs=57.1
Q ss_pred EEEEEEeCCC--CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeC-C------EEc-CCCCccccCCCCCCCEEEEE
Q 038333 43 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 43 m~i~v~~~~g--~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~-g------~~L-~d~~~L~~~~i~~g~~i~v~ 112 (120)
+.|.|.+... ...+.++++++||++||.+|+..+|+|++.|+|.+. . ..+ +|..+|.+||+++|++|+|.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 4566666654 488899999999999999999999999999999865 1 234 47899999999999999885
No 39
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.27 E-value=3.9e-11 Score=74.13 Aligned_cols=75 Identities=28% Similarity=0.442 Sum_probs=63.9
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCC-------CCCCEEEEEEEcCC
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRG 117 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i-------~~g~~i~v~~~~~g 117 (120)
+.|+ +...++-+++.++.||.+||++|+.....|+++|+|+..+..|+|++||++||+ +..+++-+..|...
T Consensus 5 lmIr-R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d 83 (119)
T cd01788 5 LMIR-RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSD 83 (119)
T ss_pred EEEE-ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCC
Confidence 3444 333455678999999999999999999999999999977788999999999999 77889999999877
Q ss_pred CCC
Q 038333 118 GEF 120 (120)
Q Consensus 118 G~~ 120 (120)
|.|
T Consensus 84 ~~f 86 (119)
T cd01788 84 DTF 86 (119)
T ss_pred CCc
Confidence 765
No 40
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.25 E-value=1.6e-10 Score=72.29 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=58.0
Q ss_pred CEEEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhcC-------CCCCceEEEeCCEEcCCCCccccCCCCCCC------
Q 038333 42 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 107 (120)
Q Consensus 42 ~m~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~-------~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~------ 107 (120)
.+.|.++..+|+ ..++.+++++||++||+.|...+. ..++.+||+|.|+.|+|+.+|+++++..|+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 467778888998 888999999999999999998874 244688999999999999999999998877
Q ss_pred EEEEEEEcC
Q 038333 108 TLHLVLRLR 116 (120)
Q Consensus 108 ~i~v~~~~~ 116 (120)
++|++++..
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 466776643
No 41
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=99.20 E-value=5.1e-11 Score=70.40 Aligned_cols=72 Identities=28% Similarity=0.417 Sum_probs=45.4
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC---EEc--CCCCccccCCCCCCCEEEEE
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g---~~L--~d~~~L~~~~i~~g~~i~v~ 112 (120)
..+|-|.|++++| .+.+++++++|+++|+++|++.+++|.+.+.|+.+. ..+ .++.+|+++||+.||.|++.
T Consensus 2 ~~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 2 ASSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ----EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 3578899999987 588999999999999999999999999999886432 345 46799999999999999874
No 42
>PLN02560 enoyl-CoA reductase
Probab=99.20 E-value=7.8e-11 Score=85.45 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=60.3
Q ss_pred EEEEEEeCCCCEE---EEEEcCCCCHHHHHHHHHhhcCC-CCCceEEEeC---C----EEcCCCCccccCCCCCCCEEEE
Q 038333 43 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 43 m~i~v~~~~g~~~---~i~v~~~~tV~~LK~~i~~~~~~-~~~~~~L~~~---g----~~L~d~~~L~~~~i~~g~~i~v 111 (120)
|+|+|+.++|+.. .+++++++||++||++|++..+. ++++|+|.+. | ..|.|+++|+++|+++|+++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6788888888875 79999999999999999999986 8999999973 3 3788999999999999998765
No 43
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=99.10 E-value=3.8e-10 Score=66.23 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.7
Q ss_pred cCCCCHHHHHHHHHhhcC-CCCCceEEE--eCCEEcCCCCccccCCCCCCCEEEE
Q 038333 60 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 60 ~~~~tV~~LK~~i~~~~~-~~~~~~~L~--~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
+++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|.++|+++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578899999999999986 578999886 7899999999999999999999876
No 44
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.09 E-value=2.4e-09 Score=60.98 Aligned_cols=73 Identities=84% Similarity=1.145 Sum_probs=67.4
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
+.+....|+...+.+.+..++..+|.+|+...++|++.+++.+.|+.|.|+.++.+|+|..++++++..++.+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 3455678899999999999999999999999999999999999999999999999999999999999988764
No 45
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.6e-09 Score=63.97 Aligned_cols=79 Identities=16% Similarity=0.421 Sum_probs=74.0
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...+.+.|+..++....+.|..+++...|.+..+++.|++.+.+|+.|+|+.+.+..|-.+++..+||.|.+...+.||
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 3567888888888899999999999999999999999999999999999999999999999999999999999888877
No 46
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.6e-10 Score=64.25 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=63.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
+++.+..+-|+...+.+++++||+++|+.|++++|..++++.|...+..++|.-+|++|.|.+|..+.+.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 4567777789999999999999999999999999999999999888889999999999999999988764
No 47
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=98.94 E-value=9.2e-10 Score=64.03 Aligned_cols=39 Identities=46% Similarity=0.833 Sum_probs=37.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++.+++
T Consensus 35 gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 35 NVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 689999999999999999999999999999999999875
No 48
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.92 E-value=1.2e-08 Score=55.71 Aligned_cols=65 Identities=45% Similarity=0.653 Sum_probs=59.3
Q ss_pred eCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 49 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 49 ~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
..++....+.+++++|+.+|+.++++.++.+++.+.|+++|..+.+...+.++++.++++|++..
T Consensus 4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34678888999999999999999999999999999999999999988888899999999998864
No 49
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=98.91 E-value=1.4e-09 Score=63.95 Aligned_cols=40 Identities=43% Similarity=0.786 Sum_probs=38.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.++++|++..++++++++++.
T Consensus 37 gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 37 NVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999999865
No 50
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.2e-09 Score=85.60 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=68.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
.|.||.++.++..+.|...+||.+||..|.+..+|+.+.|||+|.|+.|.|++++++|+| +|-+||++=|..
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 488999999999999999999999999999999999999999999999999999999999 999999987743
No 51
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=98.89 E-value=2.2e-09 Score=62.48 Aligned_cols=40 Identities=38% Similarity=0.518 Sum_probs=37.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++.++..
T Consensus 33 gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01793 33 GIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLL 72 (74)
T ss_pred CCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999988654
No 52
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=98.86 E-value=2.2e-09 Score=61.88 Aligned_cols=37 Identities=35% Similarity=0.612 Sum_probs=35.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|+++|+|+|+|++|+|+.++.+|++..++++++.+
T Consensus 33 gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 33 GVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 6899999999999999999999999999999999976
No 53
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=98.77 E-value=6.8e-09 Score=59.70 Aligned_cols=37 Identities=46% Similarity=0.842 Sum_probs=35.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++..
T Consensus 33 gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 33 GVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 6899999999999999999999999999999999875
No 54
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=98.77 E-value=1.4e-08 Score=58.06 Aligned_cols=39 Identities=59% Similarity=1.083 Sum_probs=36.7
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|+.|+|+.++.+|++.+++++++..++
T Consensus 30 ~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 30 GIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred ccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 689999999999999999999999999999999998764
No 55
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.74 E-value=8.9e-08 Score=54.94 Aligned_cols=70 Identities=29% Similarity=0.407 Sum_probs=60.9
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeC---C--EEcCCCCccccCCCCCCCEEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~---g--~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
++|+|+..++....+.|+|..+|-.+|++|....+++- .|+|.|. | ..|.+..+|++|||-..-.|.++-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 47899989889999999999999999999999999985 8999873 2 467899999999998887776654
No 56
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.74 E-value=1.4e-08 Score=58.98 Aligned_cols=40 Identities=35% Similarity=0.628 Sum_probs=37.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|.|+|++|+|+.++++|++.+++++++.++..
T Consensus 33 gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 33 RVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 6899999999999999999999999999999999987653
No 57
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=98.73 E-value=1.4e-08 Score=62.75 Aligned_cols=40 Identities=53% Similarity=0.778 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.++++|++.+++++++.++..
T Consensus 62 gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~ 101 (103)
T cd01802 62 GIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMR 101 (103)
T ss_pred CCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999987643
No 58
>PTZ00044 ubiquitin; Provisional
Probab=98.72 E-value=1.6e-08 Score=58.97 Aligned_cols=40 Identities=50% Similarity=0.825 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++.++..
T Consensus 35 gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 35 GIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 6899999999999999999999999999999999988653
No 59
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.72 E-value=8.8e-09 Score=59.86 Aligned_cols=36 Identities=39% Similarity=0.659 Sum_probs=33.5
Q ss_pred C-CCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 2 I-PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 2 ~-~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
+ |+++|+|.|+|+.|+|+.||++|+|..++++++..
T Consensus 38 i~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 38 LPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 5 48999999999999999999999999999999874
No 60
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=98.66 E-value=2.9e-08 Score=58.04 Aligned_cols=40 Identities=35% Similarity=0.689 Sum_probs=37.7
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.++++|++.++++++++++..
T Consensus 32 gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~ 71 (76)
T cd01800 32 GMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER 71 (76)
T ss_pred CCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999998764
No 61
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.64 E-value=4.6e-08 Score=56.78 Aligned_cols=40 Identities=63% Similarity=1.049 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.++++|++..++++++.++..
T Consensus 35 g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 35 GIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 6899999999999999999999999999999999998654
No 62
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.63 E-value=5.1e-08 Score=56.88 Aligned_cols=38 Identities=37% Similarity=0.729 Sum_probs=35.6
Q ss_pred CCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 3 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 3 ~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+++|+|+|+|++|+|+.++++|++..++++++.++.+
T Consensus 39 ~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 39 PPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred ChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999987653
No 63
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.62 E-value=5e-08 Score=56.62 Aligned_cols=40 Identities=98% Similarity=1.423 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++.++..
T Consensus 35 g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 6899999999999999999999999999999999998754
No 64
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=98.60 E-value=3.7e-08 Score=57.20 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=34.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|+++|+|.|.|+.|+|+.++++|++.+++++++..
T Consensus 36 ~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 36 GTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 6899999999999999999999999999999999864
No 65
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.2e-07 Score=69.94 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=65.0
Q ss_pred EEEEEEeCCCCEEEEE-EcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 43 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~-v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
..|.|+ +.|+.+.++ ++.++|+..||.++...+|+||++|+++..|..+.|+..+...+|++|.+++++-..
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 457777 667888887 999999999999999999999999999999999999988999999999999987553
No 66
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.56 E-value=6.9e-08 Score=55.46 Aligned_cols=37 Identities=49% Similarity=0.913 Sum_probs=35.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|++.|+|+|+|++|+|+.++.+|++.+++++++..
T Consensus 35 gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 35 GIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 6899999999999999999999999999999999875
No 67
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=98.56 E-value=6.9e-08 Score=55.62 Aligned_cols=37 Identities=46% Similarity=0.593 Sum_probs=34.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|+++|+|.|+|+.|+|+.++++|++.+++++++.+
T Consensus 34 ~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 34 KANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 5789999999999999999999999999999999876
No 68
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.53 E-value=7.5e-08 Score=55.57 Aligned_cols=36 Identities=42% Similarity=0.706 Sum_probs=33.2
Q ss_pred CCCCCceEEEEccEEcCCC-CCccccccccCCeEEEE
Q 038333 1 GIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~-~~l~~y~i~~~s~i~~~ 36 (120)
|+|+++|+|+|+|++|+|+ .++++|++.+++.+++.
T Consensus 34 gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 34 GIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 6899999999999999887 68999999999999875
No 69
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.1e-08 Score=53.91 Aligned_cols=36 Identities=64% Similarity=1.023 Sum_probs=34.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEE
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~ 36 (120)
|||+.+|+|+|.|++|.|++|-.+|++..+|.+++.
T Consensus 35 GIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 35 GIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 799999999999999999999999999999999873
No 70
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.5e-07 Score=65.04 Aligned_cols=62 Identities=34% Similarity=0.658 Sum_probs=55.2
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE-EEc
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 115 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~-~~~ 115 (120)
.+++.|+.+++|.+||+.++.+.|+|+++.+++|.|++|.++.+++.+.+..-+.++++ .|.
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 57899999999999999999999999999999999999999999998877777777665 443
No 71
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=98.43 E-value=2.2e-07 Score=54.61 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=35.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
++|+++|+|.|+|+.|+|+ ++.+|++.++++++++....
T Consensus 36 ~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~ 74 (78)
T cd01804 36 KVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVE 74 (78)
T ss_pred CCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecc
Confidence 5789999999999999998 99999999999999997654
No 72
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.2e-07 Score=61.64 Aligned_cols=40 Identities=98% Similarity=1.423 Sum_probs=38.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
+||+++|+|.|.|++|+|..++++|+|...+++++.++..
T Consensus 35 gIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~ 74 (156)
T KOG0004|consen 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (156)
T ss_pred CCCchhhhhhhhhcccccCCccccccccccceEEEEEEec
Confidence 6999999999999999999999999999999999999864
No 73
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.39 E-value=4.3e-07 Score=55.13 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=35.4
Q ss_pred CCCCCceEEEEccEEc-CCCCCccccccccCCeEEEEee
Q 038333 1 GIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLR 38 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L-~d~~~l~~y~i~~~s~i~~~~~ 38 (120)
++|+++|+|+|+|+.| ||.+||++|++.++|++++..+
T Consensus 39 ~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 39 SVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred cCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 5899999999999999 8899999999999999999874
No 74
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=98.37 E-value=1.9e-06 Score=50.66 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=50.1
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC------ceEEE-eCCEEcCCCCccccCCCCCCCEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~------~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
+.|+|...+|+...+.++.+.+|++|...|.+..+.+.. .+.|. .+|..|+++.+|+++||.+|+.+++
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 456777655688999999999999999999998886332 35666 6789999999999999999999876
No 75
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.37 E-value=2.5e-07 Score=54.55 Aligned_cols=39 Identities=36% Similarity=0.483 Sum_probs=36.2
Q ss_pred CCCCCceEE--EEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l--~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
++|+++|+| .|+|+.|+|+.+|++|++.+++++++.++.
T Consensus 37 ~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 37 GVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred CCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 589999999 899999999999999999999999998864
No 76
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=98.35 E-value=5.6e-06 Score=54.73 Aligned_cols=77 Identities=30% Similarity=0.522 Sum_probs=58.4
Q ss_pred EEEEEEeCCC----CEEEEEEcCCCCHHHHHHHHHhhcCCCCCce-EEEe-CCEEc--CCCCccccCCCCCC----CEEE
Q 038333 43 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH 110 (120)
Q Consensus 43 m~i~v~~~~g----~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~-~L~~-~g~~L--~d~~~L~~~~i~~g----~~i~ 110 (120)
|+|.|.+.+| .++.+.+++++||++|+..|.+..+++...+ .|.. .++.+ .++..+.++.-.+. -++.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5789999999 5888999999999999999999999998874 3443 34444 35555666544333 3788
Q ss_pred EEEEcCCCC
Q 038333 111 LVLRLRGGE 119 (120)
Q Consensus 111 v~~~~~gG~ 119 (120)
+.+++.||+
T Consensus 81 l~~rl~GGK 89 (162)
T PF13019_consen 81 LSLRLRGGK 89 (162)
T ss_pred EEEeccCCC
Confidence 899999994
No 77
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.34 E-value=3.6e-07 Score=52.35 Aligned_cols=36 Identities=36% Similarity=0.645 Sum_probs=34.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEE
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~ 36 (120)
|+|+++|+|+|+|++|+|+.++.+|++.++++++++
T Consensus 34 gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 34 GVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 689999999999999999999999999999999876
No 78
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.1e-06 Score=52.31 Aligned_cols=79 Identities=16% Similarity=0.359 Sum_probs=72.4
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+..+.+.|...++...-+.+..++|...|-...+.+.|-..+.+|+.|+|+.++.++|-++++..+++.|.++....||
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 3467788888899999999999999999999999999999999999999999999999999999999999888777776
No 79
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.29 E-value=1.5e-06 Score=52.09 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|++..|..+|++..+++|++.++..
T Consensus 46 gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 46 GLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence 6899999999999999999999999999999999987653
No 80
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.27 E-value=8.4e-07 Score=55.12 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=34.8
Q ss_pred CCC--CCceEEEEccEEcCCCCCccccc------cccCCeEEEEeecC
Q 038333 1 GIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~--~~~q~l~~~g~~L~d~~~l~~y~------i~~~s~i~~~~~~~ 40 (120)
|+| +++|+|.|+|+.|+|+.||++|+ +....++|+.+++.
T Consensus 45 ~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr~~ 92 (113)
T cd01814 45 VGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVVQPP 92 (113)
T ss_pred cCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEecCC
Confidence 355 99999999999999999999999 66678888888775
No 81
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.24 E-value=2.6e-05 Score=45.91 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=61.5
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEE--eCCEEcCCC--CccccCCCCCCCEEEEE
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 112 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~--~~g~~L~d~--~~L~~~~i~~g~~i~v~ 112 (120)
.....|.|+.++|+...-...+++|+.+|..-|......+... +.|+ |..+.+.+. .+|.+.|+.+.++++|.
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 3557899999999999999999999999999999988877665 7786 667777633 69999999999988763
No 82
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.24 E-value=6.8e-06 Score=46.56 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.1
Q ss_pred eCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 49 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 49 ~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
..+++...+.+.|++++.++-+..+++++++++...|.|+++.++-+.++.-.|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 367888999999999999999999999999999999999999999999999999999998864
No 83
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.24 E-value=2.1e-06 Score=51.64 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=48.2
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe-CC-EEcCCCCccccCCC
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNI 103 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~-~g-~~L~d~~~L~~~~i 103 (120)
+.|+ +...++-++.+++.||-+||.+++....-|++.|+|+. +. +.|+|.++|+++|.
T Consensus 5 ~~Vr-R~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 5 LRVR-RHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred eeee-ecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 4444 33456677899999999999999999999999999986 33 57899999999976
No 84
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.09 E-value=2.9e-06 Score=49.47 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=31.9
Q ss_pred CCCCCceEEEEccEEc-CCCCCccccccc-cCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQL-EDGRTLADYNIQ-KESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L-~d~~~l~~y~i~-~~s~i~~~~ 37 (120)
|+|+++|+| |+|+.| +|+.++++|++. +++++++.+
T Consensus 37 gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 37 GFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred CcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 789999999 999998 578999999999 779988864
No 85
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.04 E-value=3.6e-06 Score=48.91 Aligned_cols=36 Identities=22% Similarity=0.530 Sum_probs=33.1
Q ss_pred CCCCCceEEEE---ccEEcCCCCCccccccccCCeEEEE
Q 038333 1 GIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~~~q~l~~---~g~~L~d~~~l~~y~i~~~s~i~~~ 36 (120)
|+|+++|+|.| .|+.++|+.++++|++.+++.+.++
T Consensus 34 gvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 34 GVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 68999999996 8999999999999999999988765
No 86
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.04 E-value=3.8e-06 Score=49.41 Aligned_cols=35 Identities=37% Similarity=0.457 Sum_probs=31.7
Q ss_pred CCCceEEEEccEEcCCCCCccccc--cccCCeEEEEe
Q 038333 3 PPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 37 (120)
Q Consensus 3 ~~~~q~l~~~g~~L~d~~~l~~y~--i~~~s~i~~~~ 37 (120)
|+++|+|.|+|+.|+|+.++++|. +..+.++|+..
T Consensus 42 ~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 42 LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 479999999999999999999996 88889998863
No 87
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2e-07 Score=57.09 Aligned_cols=40 Identities=100% Similarity=1.433 Sum_probs=37.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|||+++|+|.|+|+.|+|+.|+++|++...+++++.++..
T Consensus 35 Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~ 74 (128)
T KOG0003|consen 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
T ss_pred CCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHh
Confidence 7899999999999999999999999999999999887654
No 88
>COG5417 Uncharacterized small protein [Function unknown]
Probab=98.02 E-value=8e-05 Score=42.83 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=57.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCC---C--CceEEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP---P--DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~---~--~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
++-+++.+|.++.++++...++..|-..+++...+. . ..++..-+++.|.++..|.+|+|.+||.+.+
T Consensus 8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 344577889999999999999999999999887752 2 3467888999999999999999999999865
No 89
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.99 E-value=0.00011 Score=43.13 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=58.3
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcCC---CCccccCCCCCCCEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 111 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~d---~~~L~~~~i~~g~~i~v 111 (120)
....|.|+.++|+......++++|+.+|.+-+....+.....+.|. |..+.+.+ +.+|.+.|+.+.+++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3467889999999999999999999999999977667666777776 55666753 57999999988888765
No 90
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=97.94 E-value=6.4e-06 Score=45.80 Aligned_cols=31 Identities=74% Similarity=1.086 Sum_probs=28.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKES 31 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s 31 (120)
|+|+++|+|+|+|++|+|+.++.+|++..++
T Consensus 34 ~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 34 GIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 5789999999999999999999999998764
No 91
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.89 E-value=4.6e-05 Score=46.55 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=42.5
Q ss_pred EEEEeCCC-CEEEEEEc--CCCCHHHHHHHHHhhcC--CCCCceEEEeCCEEcCCCCccccC
Q 038333 45 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 45 i~v~~~~g-~~~~i~v~--~~~tV~~LK~~i~~~~~--~~~~~~~L~~~g~~L~d~~~L~~~ 101 (120)
|+|++.++ ....++++ .+.||..||.+|.+..+ ..-.++||+|+|+.|.|...|..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 34444432 34667776 67899999999999984 344678999999999998776654
No 92
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=97.87 E-value=1.5e-05 Score=44.88 Aligned_cols=37 Identities=70% Similarity=1.141 Sum_probs=34.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|++.|.|+|+|++|+|+.++.+|++.+++.+++..
T Consensus 32 ~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 32 GVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5789999999999999999999999999999998764
No 93
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.82 E-value=0.0004 Score=40.40 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=53.5
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcC---CCCccccCCCCCCCEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 111 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~---d~~~L~~~~i~~g~~i~v 111 (120)
...|.|+.++|+...-..+.++|+.+|.+-|.....- ...+.|+ |-.+.+. .+.+|.+.|+.+ +.+.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 3578899999999999999999999999999877544 4566776 5566664 478999999994 44433
No 94
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=2.1e-05 Score=58.84 Aligned_cols=39 Identities=31% Similarity=0.596 Sum_probs=36.8
Q ss_pred CCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 2 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 2 ~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
+|+++|+|+|+|++|+|+.+|.+|+|..++.+.+++...
T Consensus 39 ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 39 YPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 899999999999999999999999999999999998764
No 95
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.80 E-value=0.00038 Score=40.87 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=55.9
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcCC---CCccccCCCCCCCEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 111 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~d---~~~L~~~~i~~g~~i~v 111 (120)
..|.|+.++|+...-..+.++|+.++.+-|....+-+ ....|+ |..+.+.+ +.||.+.|+.+..++.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 5688999999999999999999999999999776543 556676 66777753 58999999998888865
No 96
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.74 E-value=0.00057 Score=40.44 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=59.2
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcC---CCCccccCCCCCCCEEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~---d~~~L~~~~i~~g~~i~v~ 112 (120)
.-+|.|+.++|+...-....++|+.+|..-+.. .|.+++.+.|+ |-.+.+. .+.||.+.|+.+..++.|-
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 457889999999999999999999999999998 57788899988 5555553 3589999999999998774
No 97
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.70 E-value=0.00062 Score=40.01 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=54.2
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCC-CCCceEEE--eCCEEcC-CCCccccCCCCCCCEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLE-DGRTLADYNIQKESTL 109 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~-~~~~~~L~--~~g~~L~-d~~~L~~~~i~~g~~i 109 (120)
+..+|.|+.++|+...-.++.++||++|.+-|....+- ....+.|. |-.+.+. ++.||.+.|+.+ +.|
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~-s~v 74 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLN-AVI 74 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcC-cEE
Confidence 34678999999999999999999999999999987643 23566776 5667775 578999999995 444
No 98
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.67 E-value=0.00091 Score=39.41 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=59.3
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcC---CCCccccCCCCCCCEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~---d~~~L~~~~i~~g~~i~v~ 112 (120)
+..+|.|+.++|+...-....++|+.+|..-+... |.++..++|+ |--+.+. .+.+|.+.|+.+..++.|-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 45788999999999999999999999999999875 7777888887 5556553 3579999999998888764
No 99
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.63 E-value=0.0012 Score=39.31 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeC--CEEcC--------CCCccccCCCCCCCEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLH 110 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~--g~~L~--------d~~~L~~~~i~~g~~i~ 110 (120)
...+|.|+.++|+...-+...++|+++|..-|... +..++.+.|+.+ .+.+. .+.||.+.|+.+..++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 45789999999999999999999999999999654 555678888743 36664 36799999999887776
Q ss_pred EE
Q 038333 111 LV 112 (120)
Q Consensus 111 v~ 112 (120)
|.
T Consensus 82 V~ 83 (85)
T cd01774 82 VQ 83 (85)
T ss_pred Ee
Confidence 53
No 100
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.58 E-value=0.00013 Score=51.31 Aligned_cols=69 Identities=26% Similarity=0.353 Sum_probs=50.4
Q ss_pred EEEEEEeCCC--CEEEEEEcCCCCHHHHHHHHHhh-cCCCCCce----EEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 43 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDK-EGIPPDQQ----RLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 43 m~i~v~~~~g--~~~~i~v~~~~tV~~LK~~i~~~-~~~~~~~~----~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
|+|++.+.++ .......+..+|+.|+++.+.++ ..+.+.++ ++..+|++|.|+.+|++|+..+|++|++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 5677777665 23345667788999999777665 44555333 3346899999999999999999977755
No 101
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.55 E-value=0.00019 Score=40.22 Aligned_cols=40 Identities=85% Similarity=1.222 Sum_probs=36.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
++|+++|.+.+.|++|+|+.++.+|+|...+++++..+..
T Consensus 34 ~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 34 GIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 5789999999999999999999999999999999887653
No 102
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=97.53 E-value=0.00012 Score=41.88 Aligned_cols=36 Identities=42% Similarity=0.791 Sum_probs=31.5
Q ss_pred CCCC-CceEEEEccEEcCCCCCccccccccCCeEEEE
Q 038333 1 GIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~-~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~ 36 (120)
|+|+ +..+|.|+|.+|+++.|+.+|++..++.|.+.
T Consensus 35 ~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 35 GIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp TTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 5788 89999999999999999999999999999875
No 103
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0006 Score=46.76 Aligned_cols=69 Identities=16% Similarity=0.326 Sum_probs=53.7
Q ss_pred EEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCC-----EEcC-CCCccccCCCCCCCEEEEE
Q 038333 44 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 44 ~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g-----~~L~-d~~~L~~~~i~~g~~i~v~ 112 (120)
.+.|.+...+ ...-+.+++.|+++||.+++..+|.+++.|.|. |.| ..|+ ++..|..|...+|..|+++
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 4555443222 245578889999999999999999999999987 554 2454 6789999999999999876
No 104
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.40 E-value=0.00012 Score=55.79 Aligned_cols=40 Identities=50% Similarity=0.845 Sum_probs=36.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
.+++++++|.|+|+.|+|+.|+..|+|..+.++|+..+..
T Consensus 49 ~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 49 GAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred CCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 3688999999999999999999999999999999998754
No 105
>PRK06437 hypothetical protein; Provisional
Probab=97.38 E-value=0.0031 Score=35.80 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=46.8
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+++...++++...|+++|-+.+ +++++...+..+|+.+. .++-+++||+|.+..-..||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 4566788888889999887654 78888898889999997 55567789999887656555
No 106
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00053 Score=47.09 Aligned_cols=64 Identities=28% Similarity=0.428 Sum_probs=57.3
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
.++.+.+.+...+|+.++|.++.+.-++.+-.|+++++|..+.|...|.+++|..|...++-+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 4567888888999999999999999999999999999999999999999999999976655444
No 107
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=97.23 E-value=0.0082 Score=34.30 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=48.7
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|.+.... ....++++...|+.+|.+.+ ++++....+..||+.... +.-+++||.|.+..-..||
T Consensus 5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 566665332 35677888889999998766 667777788899999854 5557789999888666665
No 108
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=97.23 E-value=0.0053 Score=36.76 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=47.4
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe--C--C-EEcC-CCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--A--G-KQLE-DGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~--~--g-~~L~-d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
..+...++..+||+.+...+.+.+.+ ..+.||.. . + ..|. ...|+.+.++.+|.+|.+-.|-.+|.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGt 85 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGT 85 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS-
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCC
Confidence 46778899999999999999999999 66778763 1 2 2464 56899999999999999999988875
No 109
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=97.18 E-value=0.0036 Score=36.27 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=46.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCC----CCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~----~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...++++...||.+|.+.+...++- ......+..||+... .+.-+++||.|.+.....||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4567777788999999999988653 334667778998886 34568889999999888877
No 110
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.13 E-value=0.00087 Score=39.77 Aligned_cols=38 Identities=29% Similarity=0.601 Sum_probs=32.8
Q ss_pred CCCCCceEEE-EccE-----Ec-CCCCCccccccccCCeEEEEee
Q 038333 1 GIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVLR 38 (120)
Q Consensus 1 ~~~~~~q~l~-~~g~-----~L-~d~~~l~~y~i~~~s~i~~~~~ 38 (120)
|+|+..|+|. |.|. .| +|..+|+.|++..+.+|++.-.
T Consensus 37 G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 37 GTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred CCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 7899999995 7887 56 8899999999999999998753
No 111
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=97.03 E-value=0.0031 Score=37.62 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=38.7
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC---CceEEEeCC
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFAG 89 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~---~~~~L~~~g 89 (120)
..++.+.|+++.+.+.+++++.+|++.|++++|... +...|.|-.
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlD 50 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVD 50 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEc
Confidence 346678999999999999999999999999999876 577887743
No 112
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=97.03 E-value=0.0057 Score=35.88 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=48.9
Q ss_pred EEEEEEeCC------C-CEEEEEEcCCCCHHHHHHHHHhhcC-CCC--CceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 43 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 43 m~i~v~~~~------g-~~~~i~v~~~~tV~~LK~~i~~~~~-~~~--~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
|+|.|+... | ....++++...|+.+|++.+..... +.. ....+..|++...+ +.-+++||.|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 566666543 3 4567788888999999999987752 111 12346678887653 3456779999998
Q ss_pred EEcCCC
Q 038333 113 LRLRGG 118 (120)
Q Consensus 113 ~~~~gG 118 (120)
.-..||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 877776
No 113
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=97.01 E-value=0.0084 Score=34.75 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=50.5
Q ss_pred EEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEe----CC--EEcCCCCccccCCCC--CCCEEEEEE
Q 038333 47 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLVL 113 (120)
Q Consensus 47 v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~----~g--~~L~d~~~L~~~~i~--~g~~i~v~~ 113 (120)
|+.++|+...+++++++|+.+|-++|+...++.. +.+-|.+ ++ .-|+.+++|.++... ...++++.+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence 5668899999999999999999999999999864 4446777 22 257788899999777 333444443
No 114
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00069 Score=55.79 Aligned_cols=40 Identities=38% Similarity=0.751 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 41 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~ 41 (120)
||+.+.|+|.|+|++|.|++++.+|++ .+.++|+.-++..
T Consensus 37 ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 37 NIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 689999999999999999999999999 9999999988753
No 115
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=96.94 E-value=0.00085 Score=48.94 Aligned_cols=40 Identities=30% Similarity=0.621 Sum_probs=37.6
Q ss_pred CCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCC
Q 038333 2 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 41 (120)
Q Consensus 2 ~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~ 41 (120)
.|+++|.|.|+|+.|+|+.++.+|++...+-+.++++...
T Consensus 38 yP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 38 YPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 6889999999999999999999999999999999998764
No 116
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=96.93 E-value=0.0077 Score=35.38 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=38.0
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEE
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 91 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~ 91 (120)
|.|+... +..|++++..+..+|+++|.++.++|++.+.|.|....
T Consensus 5 vKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 5 VKVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 4444332 78899999999999999999999999999999997653
No 117
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.93 E-value=0.01 Score=33.28 Aligned_cols=60 Identities=15% Similarity=0.325 Sum_probs=43.3
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+|+.+.+ + ..|+.+|.+.+ +++++...+..|++.+.. ....+.-+++||.|.+..-..||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 4555555 3 46899988765 566666778899988863 34556678889999998777776
No 118
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=96.93 E-value=0.0062 Score=36.05 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=43.6
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
....++-..+++.||..++.+.+++.+...++..+..|.++++|-+.+++-...+.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 345677789999999999999999999999999998899999999999988888777654
No 119
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00059 Score=49.93 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=49.2
Q ss_pred CCCEEEEEEeCCCC--EEEEEEcCCCCHHHHHHHHHhhcCCC--CCceEEEeCCEEcCCCCccccC
Q 038333 40 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 40 ~~~m~i~v~~~~g~--~~~i~v~~~~tV~~LK~~i~~~~~~~--~~~~~L~~~g~~L~d~~~L~~~ 101 (120)
..++.+.|++++.+ ...|..+..+||++||..++..+.-. +.+|||+|.|+.|.|...|.+.
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 34577888888764 56677777899999999999987642 3688999999999988777664
No 120
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=96.75 E-value=0.0041 Score=38.91 Aligned_cols=38 Identities=42% Similarity=0.752 Sum_probs=27.4
Q ss_pred CCCceEEEEccEEcCCCCCccccccccCC------eEEEEeecC
Q 038333 3 PPDQQRLIFAGKQLEDGRTLADYNIQKES------TLHLVLRLR 40 (120)
Q Consensus 3 ~~~~q~l~~~g~~L~d~~~l~~y~i~~~s------~i~~~~~~~ 40 (120)
.++..+|.+.|+.|+|.++|.++.+..++ ++|+.+++.
T Consensus 47 s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmHlvvrp~ 90 (111)
T PF13881_consen 47 SPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMHLVVRPN 90 (111)
T ss_dssp SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEEEEE-SS
T ss_pred ChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEEEEecCC
Confidence 45789999999999999999999988766 455555543
No 121
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=96.71 E-value=0.0082 Score=35.50 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=48.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEeCCEE-----cCCCCcccc----CCCCCCCEEEEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ-----LEDGRTLAD----YNIQKESTLHLVL 113 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~~g~~-----L~d~~~L~~----~~i~~g~~i~v~~ 113 (120)
+|.+. .+|..+.+.++++.+..+|++.|++++++.. ..+.|.|.... |..+.-|.+ |.....++|.+.+
T Consensus 2 ~vK~~-~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v 80 (82)
T cd06407 2 RVKAT-YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLV 80 (82)
T ss_pred EEEEE-eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEe
Confidence 34444 3567899999999999999999999999875 67888886542 223333444 3444555666554
Q ss_pred E
Q 038333 114 R 114 (120)
Q Consensus 114 ~ 114 (120)
+
T Consensus 81 ~ 81 (82)
T cd06407 81 H 81 (82)
T ss_pred e
Confidence 3
No 122
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=96.70 E-value=0.024 Score=33.02 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=45.6
Q ss_pred EEEEEEcCC-CCHHHHHHHHHhhcC-C--CCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 54 TITLEVESS-DTIDNVKAKIQDKEG-I--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 54 ~~~i~v~~~-~tV~~LK~~i~~~~~-~--~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...++++.. .|+.+|++.+.++++ + ......+..|++...+ +.-+++||.|.+.....||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 456788776 899999999999875 1 1134567788888764 4567889999999888877
No 123
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=96.67 E-value=0.0018 Score=40.37 Aligned_cols=37 Identities=41% Similarity=0.662 Sum_probs=30.1
Q ss_pred CCCCceEEEEccEEcCCCCCcccccc-------ccCCeEEEEee
Q 038333 2 IPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 38 (120)
Q Consensus 2 ~~~~~q~l~~~g~~L~d~~~l~~y~i-------~~~s~i~~~~~ 38 (120)
.|+++|+|+-.+..|+|++||++|++ ...+.+-|.++
T Consensus 37 ~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 37 RPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 58899999966688999999999999 44666666665
No 124
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=96.60 E-value=0.00053 Score=49.70 Aligned_cols=77 Identities=18% Similarity=0.438 Sum_probs=0.0
Q ss_pred CEEEEEEeCCCCEEEEEEc---C--CCCHHHHHHHHHh----------hcCCCCCceE-----EEeCCEEcCCCCccccC
Q 038333 42 GMQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADY 101 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~---~--~~tV~~LK~~i~~----------~~~~~~~~~~-----L~~~g~~L~d~~~L~~~ 101 (120)
.+.|++++...-.+.+.++ + ++||.++|..+++ ..++|.++++ |.|+.+++.|+++|.+.
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~ 157 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEV 157 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHH
Confidence 4777777765544544433 2 5789999999999 8999999999 99999999999998887
Q ss_pred CCC-------CCCEEEEEEEcCCC
Q 038333 102 NIQ-------KESTLHLVLRLRGG 118 (120)
Q Consensus 102 ~i~-------~g~~i~v~~~~~gG 118 (120)
.-. .+.++.+.+-..||
T Consensus 158 l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 158 LADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp ------------------------
T ss_pred HhcccchhccCCceEEEEEEEECC
Confidence 433 46677776666666
No 125
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.56 E-value=0.021 Score=32.13 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=42.1
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..++++..|+.+|-+. .++++....+.+++..+.... ...+ +++||+|.+..-..||
T Consensus 9 ~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 9 QVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 4455677888877654 478888999999999886332 2345 8999999988666665
No 126
>PRK07440 hypothetical protein; Provisional
Probab=96.51 E-value=0.039 Score=31.56 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=49.1
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+|+|.+. |+ ..++....|+.+|-+ ..++++...-+..|++.+.-+ .-.+.-+++||.|.+..-..||
T Consensus 4 ~m~i~vN---G~--~~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQVN---GE--TRTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEEC---CE--EEEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 4666655 44 466677889988775 446788888899999988632 3556668889999998766665
No 127
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=96.50 E-value=0.028 Score=31.44 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=42.9
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..+++...|+.+|-.. .++++....+..+|+.+.-. .-.+.-+++||+|.+..-..||
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 4566677898887754 57888888888999888633 2344457889999998766665
No 128
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=96.48 E-value=0.003 Score=36.70 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=30.1
Q ss_pred CCCCceEEE--EccEEcCCCCCccccccccCCeEEE
Q 038333 2 IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 35 (120)
Q Consensus 2 ~~~~~q~l~--~~g~~L~d~~~l~~y~i~~~s~i~~ 35 (120)
+++++|+|. +.|..|.|+.++.+|++..++++++
T Consensus 39 ~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 39 LTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 467999986 7899999999999999999998876
No 129
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=96.44 E-value=0.029 Score=31.44 Aligned_cols=58 Identities=21% Similarity=0.390 Sum_probs=43.9
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.++++...|+.+|.+.+ +++++.+.+..+|+.+..+ .-.+.-+++||.|.+..-..||
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45666788999988776 4677888888999988643 2344558889999998777776
No 130
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=96.38 E-value=0.039 Score=32.63 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=44.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCC------C-----CCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~------~-----~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...++++ ..||.+|.+.+.+++.- . ...+.+..||+....+.. .-+++||.|.+.....||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4566775 88999999999988741 1 123667788887764431 568899999999888877
No 131
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=96.37 E-value=0.028 Score=32.17 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=50.3
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCC--CCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~--~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...+.+....||.+|.+.+..++.- ......+..||+...+ .-.+.-+++||.|.+..-..||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5677888899999999999988642 2367788899999887 3556667889999998877776
No 132
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=96.35 E-value=0.0089 Score=34.83 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=46.3
Q ss_pred EcCCCCHHHHHHHHHhhcC-CCCCceEEEeCCEEcCCCCccccC-CCCCCCEEEEEEE
Q 038333 59 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 114 (120)
Q Consensus 59 v~~~~tV~~LK~~i~~~~~-~~~~~~~L~~~g~~L~d~~~L~~~-~i~~g~~i~v~~~ 114 (120)
|+++++|.++++.+..... ..-..+.|.++|+.|++...|++. |+++|+.+.+.-+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 4678999999999988755 355678899999999998888887 4888999888744
No 133
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=96.25 E-value=0.031 Score=32.48 Aligned_cols=47 Identities=15% Similarity=0.340 Sum_probs=39.2
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 90 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~ 90 (120)
+++.++. ++..+.+.++++.|..+|+.+|.+.++.+.+.+.|.|...
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 3455554 6678899999999999999999999999888888888653
No 134
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.25 E-value=0.067 Score=30.07 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=42.0
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.+++....|+.+|.+.+ +.+.....+..|++.+..+ .-.+.-+++||.|.+..-..||
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 9 PMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 45556778999988654 5555668888999988522 2445568889999988777666
No 135
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=96.22 E-value=0.05 Score=30.36 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=42.9
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.++++...|+.+|.+.+ +++++...+..+|+.+..+ .-.++-+++||.|.+..-..||
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45556778999988765 5667777888999988533 2445568899999988777776
No 136
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.011 Score=43.48 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=48.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeC---CE-----EcCCCCccccCCCCCCCEEEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GK-----QLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~---g~-----~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
...-+....||.+++..+....|+.+.+|+|++- |+ ..+.+.+|..|.|++||.+.+-
T Consensus 350 ~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 350 ASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred cceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3456777889999999999999999999999873 33 3456789999999999998664
No 137
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.01 E-value=0.1 Score=29.00 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=39.9
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.+++++..|+.+|.+.+.. + ....+..+|....... -.+.-+++||+|.+..-..||
T Consensus 9 ~~~~~~~~tl~~ll~~l~~----~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 9 TLSLPDGATVADALAAYGA----R-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EEECCCCCcHHHHHHhhCC----C-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 5566778899999887643 3 3466778998875321 334447889999998777776
No 138
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=96.01 E-value=0.17 Score=34.05 Aligned_cols=74 Identities=27% Similarity=0.344 Sum_probs=53.3
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEeC---C---EEcCCCCccccCCCC-CCCEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLV 112 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~~---g---~~L~d~~~L~~~~i~-~g~~i~v~ 112 (120)
.++.+.|..++|....+.+++.+|+.++.+.++.+.|++. ..+-|.+. + ..++...++.+...+ ....+++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 4578889999999999999999999999999999999954 23344431 1 345566677766554 23455554
Q ss_pred EE
Q 038333 113 LR 114 (120)
Q Consensus 113 ~~ 114 (120)
.|
T Consensus 82 ~r 83 (207)
T smart00295 82 VK 83 (207)
T ss_pred EE
Confidence 44
No 139
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=95.94 E-value=0.086 Score=29.80 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=43.6
Q ss_pred CCCEEEEEEcCC-CCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 51 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 51 ~g~~~~i~v~~~-~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+|+. .+++.. .||.+|-+ ..++++...-+..+++.+..+ .-.+.-+++||.|.+..-..||
T Consensus 6 NG~~--~~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQ--IEVPESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEE--EEcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 4543 355554 57887765 457788888888999988643 3566668999999988666665
No 140
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=95.91 E-value=0.17 Score=30.05 Aligned_cols=62 Identities=11% Similarity=0.257 Sum_probs=46.2
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.+|+ ..+++...||.+|-+. .++++...-+..||..+.- ..-.+.-+++||.|.+..-..||
T Consensus 23 VNG~--~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 23 INDQ--SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred ECCe--EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 3455 4555677888888765 4778888888899998853 34667778999999988666665
No 141
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=95.89 E-value=0.037 Score=30.41 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=37.2
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
..+++..+.|+.+||.++.... + -++++|-+..++..|.+ ||.|.++-|
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~~-----D-I~I~NGF~~~~d~~L~e-----~D~v~~Ikk 56 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPDA-----D-IVILNGFPTKEDIELKE-----GDEVFLIKK 56 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCCC-----C-EEEEcCcccCCccccCC-----CCEEEEEeC
Confidence 4678888899999998876542 2 46799988887766655 899987654
No 142
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=95.86 E-value=0.09 Score=29.55 Aligned_cols=67 Identities=22% Similarity=0.438 Sum_probs=52.4
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcC---CCCCceEEE-eCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~---~~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
+|+...++.++++...-.+.+--+..+ -|++.+.|. -+|..|+-++...+||+.+|-++.+..+-.-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAGv 74 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAGV 74 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeeccc
Confidence 567778888888876666655544444 588888887 6888999899999999999999999887543
No 143
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=95.79 E-value=0.1 Score=31.10 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=43.8
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCcccc
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 100 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~ 100 (120)
.|+|.+.. +|....+.++++.+..+|..+|..++++. ..+.+.|... .|-.|+.+
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 46666663 56789999999999999999999999996 6778888776 55556554
No 144
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=95.79 E-value=0.016 Score=42.97 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=56.5
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCC--CCccccCCCCCCCEEEEEEE
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d--~~~L~~~~i~~g~~i~v~~~ 114 (120)
..+++++.+..+-....|+..++..+|++.+..-++|+++++.+ ...+..+|+.+++++.+-.+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 45678899999999999999999999999999999999999974 47899999999999876544
No 145
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.74 E-value=0.14 Score=36.35 Aligned_cols=86 Identities=17% Similarity=0.353 Sum_probs=57.8
Q ss_pred CCCCCceEEEEcc------EEcCCCCCccccccccCCeEEEEeecCC--------------------CEEEEEEeCC---
Q 038333 1 GIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG--------------------GMQIFVKTLT--- 51 (120)
Q Consensus 1 ~~~~~~q~l~~~g------~~L~d~~~l~~y~i~~~s~i~~~~~~~~--------------------~m~i~v~~~~--- 51 (120)
|.|.+...++|.= .+++...++....+..|+++.+...... .+.|.++...
T Consensus 109 g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~ 188 (249)
T PF12436_consen 109 GLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPN 188 (249)
T ss_dssp T--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT
T ss_pred CCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCC
Confidence 4555555556552 5679999999999999999999986542 1777777632
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
+..+.+.++..+|-.+|-++|+++.+++|+.++|+
T Consensus 189 ~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 189 DPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp ---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 34789999999999999999999999999999997
No 146
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=95.68 E-value=0.13 Score=29.60 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.7
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
+.|..++|+...+.+.|..|+.+.-+++.++.|+.++...++..|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456778999999999999999999999999999999888777543
No 147
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=95.62 E-value=0.015 Score=34.55 Aligned_cols=39 Identities=36% Similarity=0.638 Sum_probs=29.6
Q ss_pred CCCCCceEEEEc----c---EEc-CCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~----g---~~L-~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|++.|+|.+. + ..+ +|..+|..|++..+..|++.-+.
T Consensus 38 Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~ 84 (87)
T PF14560_consen 38 GIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTN 84 (87)
T ss_dssp TS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T
T ss_pred CCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCC
Confidence 789999999987 1 334 77999999999999999887543
No 148
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.0099 Score=43.51 Aligned_cols=39 Identities=41% Similarity=0.800 Sum_probs=35.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEE-eec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~-~~~ 39 (120)
|+|+++.+++|.|++|+|+.++.++.+...|..+++ +++
T Consensus 38 gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 38 GVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 689999999999999999999999999999999988 444
No 149
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=95.19 E-value=0.13 Score=37.94 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=47.2
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 120 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~~ 120 (120)
.+++....|+.+|-+. .+++++.+-+..||+.+.-+ .-.++-+++||.|.+..-..||.|
T Consensus 9 ~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 9 PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCCCC
Confidence 4566677888887764 48888899999999998633 356667889999999988888865
No 150
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=95.19 E-value=0.13 Score=29.81 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCEEE-EEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 43 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 43 m~i~v~~~~g~~~~-i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
+.+.+...+ .... +.+..+.|..+|+.+|++.++.+...+.|.|.+
T Consensus 2 ~~vK~~~~~-~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGG-DIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETT-EEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEEECC-eeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 455666444 4555 899999999999999999999998888998854
No 151
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=95.06 E-value=0.31 Score=27.71 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=44.7
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..++++...|+++|-. ..+++++..-...||..+..+ .-.+.-+++||.|.++--..||
T Consensus 10 ~~~e~~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 10 KEVEIAEGTTVADLLA----QLGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEEcCCCCcHHHHHH----HhCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 4677777799999875 457778888888999988643 3456667889999887666655
No 152
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=94.97 E-value=0.043 Score=31.73 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=30.7
Q ss_pred CceEEEEc-----cEEcCCCCCccccccccCCeEEEEeecC
Q 038333 5 DQQRLIFA-----GKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 5 ~~q~l~~~-----g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
..|+|.|+ -+.|.+..+|++|+|.++-.|.+.-+.+
T Consensus 38 g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 38 GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred cceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 48999998 2677999999999999999999886654
No 153
>smart00455 RBD Raf-like Ras-binding domain.
Probab=94.86 E-value=0.18 Score=28.79 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=41.8
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC--EEcC
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 93 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g--~~L~ 93 (120)
..|..++|+...+.+.|..|+.+.-..+.++.|+.++...++..| +.|+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccee
Confidence 346678999999999999999999999999999999998888754 3444
No 154
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=94.59 E-value=0.48 Score=27.61 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=38.6
Q ss_pred EEEEcC-CCCHHHHHHHHHhhcC-----CCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~-~~tV~~LK~~i~~~~~-----~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.+++++ ..||.+|++.+.+++. ......++.-|++...+ +.-+++||.|.+.....||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 344544 4799999999998863 12233444556654432 3347889999998888877
No 155
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=94.34 E-value=0.27 Score=28.30 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=35.9
Q ss_pred EEEEeCCCCEEEEEEc-CCCCHHHHHHHHHhhcCCCCCceEEEeCCE
Q 038333 45 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 90 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~-~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~ 90 (120)
|.++. +|..+.+.++ .+.|..+|+.+|++.++.+.....+.|...
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~ 48 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE 48 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC
Confidence 44443 3567889988 889999999999999999877778877653
No 156
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=94.11 E-value=0.33 Score=28.64 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=32.2
Q ss_pred EEEEeCCCCEEEEEEcC--CCCHHHHHHHHHhhcCCCCCceEEEe
Q 038333 45 IFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 87 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~--~~tV~~LK~~i~~~~~~~~~~~~L~~ 87 (120)
|.+. .+|....+.+++ +.|..+|++.++.+++++ .+.|.|
T Consensus 3 vKat-y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 3 LKVT-YNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EEEE-ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3444 457788999998 779999999999999999 565555
No 157
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=93.99 E-value=0.44 Score=36.81 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=55.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCC------CCCceEEE-eCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~------~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
+++|...+ +...+-++.+..+++|--.|-...+- ......|. .+|.+|+.+.+|.+.||.||+.+++..+.
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 46666554 44677788888999999999887764 22345565 57889999999999999999999998653
No 158
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=93.93 E-value=0.2 Score=37.62 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEE--eCCEEcC-CCCccccCCCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI--FAGKQLE-DGRTLADYNIQKE 106 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~--~~g~~L~-d~~~L~~~~i~~g 106 (120)
++-.|.|+..+|+.....++.+.||.+++..|.....-.+ ..+.|+ |--++|. ++.||++.|+.+-
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhh
Confidence 3467889989999899999999999999999998876543 456565 5667775 6689999999754
No 159
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=93.45 E-value=0.24 Score=28.95 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
++.+++.+..+.++|+.+|+++...+++..+|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 567889999999999999999999999999999854
No 160
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=93.45 E-value=0.49 Score=28.85 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.1
Q ss_pred EEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe
Q 038333 47 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 87 (120)
Q Consensus 47 v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~ 87 (120)
++..+|++..+.|+.+.|..+|+.++++.++.+.. +.|.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 34578999999999999999999999999999865 55554
No 161
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.33 E-value=0.016 Score=44.24 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=51.8
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
..++++.+-|.++|+..|++.+|++.+..+.+.+|+.+.-.+||.+.|++......+.+.
T Consensus 52 ~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 52 NLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 356777788999999999999999999899999999999999999999987766555443
No 162
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=93.08 E-value=0.28 Score=31.08 Aligned_cols=59 Identities=20% Similarity=0.488 Sum_probs=41.2
Q ss_pred EEEEE-EcC-CCCHHHHHHHHHhhcC----CCC------CceEEEeCC-----------------EEc---CCCCccccC
Q 038333 54 TITLE-VES-SDTIDNVKAKIQDKEG----IPP------DQQRLIFAG-----------------KQL---EDGRTLADY 101 (120)
Q Consensus 54 ~~~i~-v~~-~~tV~~LK~~i~~~~~----~~~------~~~~L~~~g-----------------~~L---~d~~~L~~~ 101 (120)
.+.+. ++. ++||.+|++.+.+... ++| +.+++++.. ..| +++.+|.++
T Consensus 16 ~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~ 95 (122)
T PF10209_consen 16 NLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKEL 95 (122)
T ss_pred eeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHc
Confidence 34454 776 8899999998887654 332 344554321 356 678999999
Q ss_pred CCCCCCEEEEE
Q 038333 102 NIQKESTLHLV 112 (120)
Q Consensus 102 ~i~~g~~i~v~ 112 (120)
||.+...|.+.
T Consensus 96 gv~nETEiSfF 106 (122)
T PF10209_consen 96 GVENETEISFF 106 (122)
T ss_pred CCCccceeeee
Confidence 99999888764
No 163
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=92.90 E-value=0.68 Score=27.86 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=44.7
Q ss_pred CCCCEEEEEEcC-----CCCHHHHHHHHHhhcCCCC-CceEEEeCCE-----EcCCCCccccC-----CCCCCCEEEEEE
Q 038333 50 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLADY-----NIQKESTLHLVL 113 (120)
Q Consensus 50 ~~g~~~~i~v~~-----~~tV~~LK~~i~~~~~~~~-~~~~L~~~g~-----~L~d~~~L~~~-----~i~~g~~i~v~~ 113 (120)
.+|....+.++. +.+..+|+.+|++.+++++ ..+.|.|... .|.++.-|.+. .-....++.+.+
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 356677788874 6899999999999999987 6778888653 34433333332 223566666666
Q ss_pred Ec
Q 038333 114 RL 115 (120)
Q Consensus 114 ~~ 115 (120)
++
T Consensus 87 ~~ 88 (91)
T cd06398 87 TV 88 (91)
T ss_pred EE
Confidence 54
No 164
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=92.71 E-value=0.2 Score=26.03 Aligned_cols=37 Identities=51% Similarity=0.814 Sum_probs=32.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|++++.+.|+++|..+++..+...|.+..++.+.+..
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 32 GLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3577899999999999999888899999999888763
No 165
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=92.46 E-value=1.2 Score=25.65 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=51.9
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.+.|+..+.....-+-.++++++|+..--++ ..|-=+++.++-...-++.|+.+.++.|-+-|
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrvG 82 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG 82 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccCC
Confidence 4678888888888888999999988776665 56667788899999999999999999887644
No 166
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=92.26 E-value=1.3 Score=25.30 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=39.4
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeC--CEEcCCCCc
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRT 97 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~--g~~L~d~~~ 97 (120)
+.|..++|+...+.+.+..|+.+.-..+.+..++.++...++.. .+.++-+..
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d 57 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQD 57 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSB
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCc
Confidence 45677899999999999999999999999999999887776643 345654433
No 167
>PLN02560 enoyl-CoA reductase
Probab=91.77 E-value=0.19 Score=36.94 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=29.2
Q ss_pred CCCceEEEEc-------cEEcCCCCCccccccccCCeEEEEe
Q 038333 3 PPDQQRLIFA-------GKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 3 ~~~~q~l~~~-------g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
++++|+|.+. |..|+|++++.+|++.+++++++--
T Consensus 41 ~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~kD 82 (308)
T PLN02560 41 YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFKD 82 (308)
T ss_pred ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEEe
Confidence 6899999973 4488999999999999999877543
No 168
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.88 Score=32.83 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcC-C--CCccccCCCCCCCEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE-D--GRTLADYNIQKESTLHL 111 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~-d--~~~L~~~~i~~g~~i~v 111 (120)
..-.|.|+.++|++...++++..|+..++.-+....+.......|. |-...+. | .++|..+++.+-+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 4567889999999999999999999999999999999876666665 3334443 2 37899999988877643
No 169
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=91.24 E-value=1 Score=26.44 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=39.9
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCE-----EcCCCCccccC
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----QLEDGRTLADY 101 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~-----~L~d~~~L~~~ 101 (120)
.+|.+..+.++..-|-+.|+++|+..+.+|+..+-+.|-.. .|.++.-|+++
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 46678888888888999999999999999998888877332 34455555544
No 170
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=90.91 E-value=1.1 Score=34.26 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=52.5
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC--CCCCceEEEe--C--CEE--cCCCCccccCCCCCCCEEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIF--A--GKQ--LEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~--~~~~~~~L~~--~--g~~--L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
|-+.+++..|. +.+++.++++.+-|-.+|-..+- ..++.+.+.- + |.. +..++++.+.|++.|+++++..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 45677877774 88999999999999888877655 4566666653 2 221 3356799999999999999865
No 171
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=90.47 E-value=1 Score=26.82 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=30.9
Q ss_pred EEEcC-CCCHHHHHHHHHh-hcCCCCCce----EEEeCCEE----cCCCCccccCCCCCCCEEEEE
Q 038333 57 LEVES-SDTIDNVKAKIQD-KEGIPPDQQ----RLIFAGKQ----LEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 57 i~v~~-~~tV~~LK~~i~~-~~~~~~~~~----~L~~~g~~----L~d~~~L~~~~i~~g~~i~v~ 112 (120)
+.++. .+|+.+|-++|-+ +.|+..-.+ +++|.... -..+++|+++||.+|+.+.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 44554 5699999998754 677643222 34443332 224578999999999987663
No 172
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=90.29 E-value=2.2 Score=25.38 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 86 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~ 86 (120)
.-|.|...+|+...+.|++.+|+.+.-..++.+..... ....|+
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~Lv 47 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLV 47 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 34667778999999999999999999999999988754 344554
No 173
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=90.24 E-value=1.6 Score=26.30 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHhhcCCCCCceEEEe-CCE------Ec-CCC--Ccc--ccCCCCCCCEEEEEEEcCCC
Q 038333 61 SSDTIDNVKAKIQDKEGIPPDQQRLIF-AGK------QL-EDG--RTL--ADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 61 ~~~tV~~LK~~i~~~~~~~~~~~~L~~-~g~------~L-~d~--~~L--~~~~i~~g~~i~v~~~~~gG 118 (120)
...||.+|-..+++.+. ..+-+++. +|+ .| ++. ..+ .++-+++||.|.+...+.||
T Consensus 27 ~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 27 KPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred CCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 56799999999998873 33333332 221 12 222 223 35678999999998877776
No 174
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=90.17 E-value=4.5 Score=28.01 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=34.6
Q ss_pred CEEEEEEeCCC---CEEEEEEcCCCCHHHHHHHHHhhcCCCCC---ceEEE--eCCE---EcCCCCccccC
Q 038333 42 GMQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADY 101 (120)
Q Consensus 42 ~m~i~v~~~~g---~~~~i~v~~~~tV~~LK~~i~~~~~~~~~---~~~L~--~~g~---~L~d~~~L~~~ 101 (120)
.++++....+- +.+.+.++.+.||++|.+.+....+++.+ .++++ ++++ .+..+.++.+.
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 35555554332 35778899999999999999999998765 56665 5665 46667777765
No 175
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=90.15 E-value=2.3 Score=24.75 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=33.6
Q ss_pred EEEEeCCCC----EEEEEEcCCCCHHHHHHHHHhhcCC--CCCceEEE
Q 038333 45 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 86 (120)
Q Consensus 45 i~v~~~~g~----~~~i~v~~~~tV~~LK~~i~~~~~~--~~~~~~L~ 86 (120)
|.|...++. ...+.|++++|+.++-..+.+++++ .+....|+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 445555555 7899999999999999999999998 44566773
No 176
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=89.93 E-value=1.5 Score=25.71 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhhcCCCCCceEEEe--CCEEcCCCCcccc
Q 038333 63 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 100 (120)
Q Consensus 63 ~tV~~LK~~i~~~~~~~~~~~~L~~--~g~~L~d~~~L~~ 100 (120)
.|+.+|+.+.++.++++.+..+|+. +|++.+|+..+..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t 60 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT 60 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh
Confidence 5899999999999999987787775 7888887765555
No 177
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=89.84 E-value=0.45 Score=30.20 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=41.7
Q ss_pred CCCEEEEEEeCC---CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCcccc
Q 038333 40 RGGMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 100 (120)
Q Consensus 40 ~~~m~i~v~~~~---g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~ 100 (120)
+..+.|.|.-.. .+..-+-|+.+.||+++...|.++.+++++.+-|+.++.....+.++++
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 344555553322 2333336999999999999999999999988666667766655556654
No 178
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=0.92 Score=27.72 Aligned_cols=39 Identities=21% Similarity=0.492 Sum_probs=35.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|++.+.-++.|+|++++...|=.+.+...+..|.+....
T Consensus 55 Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 55 GLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred CCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 678889999999999999999999999999999887654
No 179
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=88.59 E-value=3.2 Score=24.16 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCC--CCceEEE
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 86 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~--~~~~~L~ 86 (120)
+....+.|+.++|..++-..+.++++++ ++...|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678899999999999999999999986 5666665
No 180
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=88.15 E-value=3.3 Score=24.11 Aligned_cols=40 Identities=8% Similarity=0.119 Sum_probs=35.1
Q ss_pred EEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 47 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 47 v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
|..++|+...+.+.+++|+.++-+..++..++.++.--|.
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 5568899999999999999999999999999988766554
No 181
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=87.71 E-value=0.72 Score=28.09 Aligned_cols=30 Identities=37% Similarity=0.785 Sum_probs=23.0
Q ss_pred EEEEccEEcCCCCCccccccccCCeEEEEee
Q 038333 8 RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 38 (120)
Q Consensus 8 ~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~ 38 (120)
.|+|+|++|..+++|.+| +.......+.++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivK 32 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVK 32 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEE
Confidence 589999999999999999 555554444443
No 182
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=87.60 E-value=2.5 Score=25.24 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=36.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 84 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~ 84 (120)
+++.|--++|....+++..+++..++-+.+.++.++|.+-+.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 456777789999999999999999999999999999987553
No 183
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=3.4 Score=25.82 Aligned_cols=50 Identities=10% Similarity=0.232 Sum_probs=37.9
Q ss_pred CEEEEEEeCCC----CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEE
Q 038333 42 GMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 91 (120)
Q Consensus 42 ~m~i~v~~~~g----~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~ 91 (120)
++.|.++.-++ +.....|++++|++.+...|.+..+++++++-+.|=..-
T Consensus 30 kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 30 KVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred eEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 34555554332 345689999999999999999999999998877764443
No 184
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=87.40 E-value=2.3 Score=24.66 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcCCCCccccCCCCCCCEEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
-.|..+|+.+.++.++++....+|+ -+|++++|+..++. +.++..+.+
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~~ 67 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELMA 67 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEEE
Confidence 3579999999999999986666654 48999988766665 444544433
No 185
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=87.16 E-value=0.65 Score=26.90 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred EccEEcCCCCCccccccccCCeEEE
Q 038333 11 FAGKQLEDGRTLADYNIQKESTLHL 35 (120)
Q Consensus 11 ~~g~~L~d~~~l~~y~i~~~s~i~~ 35 (120)
-+|.+|+++.+|.++++..|+.+.+
T Consensus 54 ~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 54 AGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred cCCcccCCcCcHhHcCCCCCCEEEe
Confidence 5699999999999999999999876
No 186
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=86.59 E-value=5.4 Score=24.32 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=34.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 86 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~ 86 (120)
-|.|-..++.-..+.++.++||+++-..++.++.++. ++.+|+
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 3555556777788999999999999999999998866 555655
No 187
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=85.92 E-value=1.3 Score=26.20 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=37.4
Q ss_pred EEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEc--------------CCCCccccCCCCCCCEEEEE
Q 038333 57 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--------------EDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 57 i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L--------------~d~~~L~~~~i~~g~~i~v~ 112 (120)
+++++++|+.+|.+.+++...+...+=.|...++.| +=+++|.+. +.+|+.|.|.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 578999999999999999854433333333333311 235789999 9999988774
No 188
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=85.83 E-value=2.9 Score=24.43 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEE--EeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~~~L--~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
-.|..+|+.+.++.++++....+| .-+|+.++++..+.. +.++..+.+
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~ 69 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMV 69 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEE
Confidence 357999999999999997655555 568999987766665 455555543
No 189
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.69 E-value=5.9 Score=23.96 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEEeCCE-------EcCC-CCc---cccCCCCCCCEEEEEEEcCCC
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLED-GRT---LADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~~~L~~~g~-------~L~d-~~~---L~~~~i~~g~~i~v~~~~~gG 118 (120)
.+||++|-.-|.+.+--.++. -+..+|. ..+| +.. =.+|.+++||.|.++..+-||
T Consensus 35 ~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 35 PATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFISTLHGG 101 (101)
T ss_pred cccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEEEeccCC
Confidence 579999999998855433333 3334443 1222 122 257899999999999888876
No 190
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=85.61 E-value=1.1 Score=31.92 Aligned_cols=73 Identities=18% Similarity=0.441 Sum_probs=48.0
Q ss_pred CEEEEEEeCCC--CEE----EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeC----C--EEcCCCCccccCCCCCCCEE
Q 038333 42 GMQIFVKTLTG--KTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTL 109 (120)
Q Consensus 42 ~m~i~v~~~~g--~~~----~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~----g--~~L~d~~~L~~~~i~~g~~i 109 (120)
.+-|++|..+- +.+ .+.|+.+++|++|-..|.+..|+|++.--.+|. + ..++.+.++....+.+||.|
T Consensus 68 ~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi 147 (249)
T PF12436_consen 68 DILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDII 147 (249)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEE
T ss_pred cEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEE
Confidence 47788887542 333 357889999999999999999999875544443 2 35778899999999999998
Q ss_pred EEEEE
Q 038333 110 HLVLR 114 (120)
Q Consensus 110 ~v~~~ 114 (120)
.+-..
T Consensus 148 ~fQ~~ 152 (249)
T PF12436_consen 148 CFQRA 152 (249)
T ss_dssp EEEE-
T ss_pred EEEec
Confidence 76543
No 191
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=85.15 E-value=5.4 Score=23.03 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=39.9
Q ss_pred EEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC--EEcC
Q 038333 47 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 93 (120)
Q Consensus 47 v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g--~~L~ 93 (120)
|..+||+...+.+.|..|+.+.-.++.++.|++++...++.-| +++.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLV 52 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccc
Confidence 4568899999999999999999999999999999888777555 3454
No 192
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=85.01 E-value=0.29 Score=29.76 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=22.4
Q ss_pred CCCceEEEE-cc-EEcCCCCCcccccccc
Q 038333 3 PPDQQRLIF-AG-KQLEDGRTLADYNIQK 29 (120)
Q Consensus 3 ~~~~q~l~~-~g-~~L~d~~~l~~y~i~~ 29 (120)
|+++|+||- .- +.|+|.++|++++..+
T Consensus 38 Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 38 PVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred CCcchheeecCHHHHhhccchhhhccccc
Confidence 789999995 43 7789999999998654
No 193
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=84.90 E-value=3.3 Score=33.84 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=36.9
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEc
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 92 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L 92 (120)
+...+.+.++++.|+..++..|.+.+|+|.+.|-|.+.+...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 345688899999999999999999999999999999887643
No 194
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=84.88 E-value=3.4 Score=24.18 Aligned_cols=48 Identities=17% Similarity=0.370 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcCCCCccccCCCCCCCEEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
-.|..+|+.+.++.++++....+|+ -+|++++|+..++. +.++..+.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l~~ 69 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVLML 69 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEEEE
Confidence 3579999999999999976666555 58999987766665 344544433
No 195
>PRK01777 hypothetical protein; Validated
Probab=84.68 E-value=6.7 Score=23.74 Aligned_cols=65 Identities=8% Similarity=0.074 Sum_probs=40.8
Q ss_pred CEEEEEEeC-CC--CEEEEEEcCCCCHHHHHHHHHhhcCCCCC--c-----eEEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 42 GMQIFVKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 42 ~m~i~v~~~-~g--~~~~i~v~~~~tV~~LK~~i~~~~~~~~~--~-----~~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
.|+|.|... .. ....+++++.+||.+.-... |++.. . ..+.-+|+....+. -+++||+|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~-----~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTD-----VLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCC-----cCCCCCEEEE
Confidence 355555442 22 24567888999999887665 55444 2 24556777765444 4566999998
Q ss_pred EEEc
Q 038333 112 VLRL 115 (120)
Q Consensus 112 ~~~~ 115 (120)
..-+
T Consensus 74 yrPL 77 (95)
T PRK01777 74 YRPL 77 (95)
T ss_pred ecCC
Confidence 7544
No 196
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=1.3 Score=34.22 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=34.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|++..+|..+.|+.......|+++.++..+=+.
T Consensus 38 gV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 38 GVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred CCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 689999999999999999988888899999988877544
No 197
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=84.02 E-value=6.5 Score=23.06 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=40.9
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+..+...++..+||.++-+ ..|+|..+.-++ -||+..+-+ |-+++|+.|.+...
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEec
Confidence 3457778889999988764 579999998665 688877543 66778999988653
No 198
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=83.25 E-value=7 Score=22.84 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=37.5
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCC--CceEEE--e-CC--EEcC-CCCccccC
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI--F-AG--KQLE-DGRTLADY 101 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~--~~~~L~--~-~g--~~L~-d~~~L~~~ 101 (120)
++....+.+++++|..++-..+.++++++. +...|+ . ++ +.|. +..++...
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~~~ 72 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQLQ 72 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceEeh
Confidence 366788999999999999999999999864 566665 3 44 3454 45555443
No 199
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=83.07 E-value=3.3 Score=25.52 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEcCCCCccccC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L~d~~~L~~~ 101 (120)
.+=|+.+.||+++...|..+..++++. +-|+.++.....+.++++.
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 345788999999999999999997653 5666777666777777653
No 200
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=82.95 E-value=4.1 Score=23.94 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHhhcCCCCC--ceEE--EeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPPD--QQRL--IFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~--~~~L--~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
-.|..+|+.+..+.+.++.. ..+| .-+|++++|+..+.. +.++..+.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l~~ 71 (80)
T cd06536 20 ASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNTKFVL 71 (80)
T ss_pred cCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCcEEEE
Confidence 35799999999999999833 2444 468999988766665 444544433
No 201
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=82.83 E-value=6.9 Score=24.43 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=39.2
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEcCCCCccccC----CCCCCCEEEEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY----NIQKESTLHLVL 113 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L~d~~~L~~~----~i~~g~~i~v~~ 113 (120)
..+-|+.+.||+++...|..+..++++. +-|+.++.....+.++++. +-. +..+++..
T Consensus 43 ~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~-DGfLyl~Y 105 (112)
T cd01611 43 KKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDE-DGFLYMTY 105 (112)
T ss_pred ceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCC-CCEEEEEE
Confidence 3456999999999999999999987765 4555566544555665543 323 34565544
No 202
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=82.37 E-value=8.2 Score=22.96 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=46.9
Q ss_pred EEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhc-C--CC--CC-ceEEEeCC--EEcCCCCccccCCCCCCCEEEEEEE
Q 038333 45 IFVKTLTGK-TITLEVESSDTIDNVKAKIQDKE-G--IP--PD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 45 i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~-~--~~--~~-~~~L~~~g--~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
|+....+.- ..-+-|+..+|+.++-++++... | ++ +. ..++.++| +.+..+.++++.||++-+.|.+...
T Consensus 6 l~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 6 LTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEETT-SBEEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred eeEeeccceEEEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 444444332 45578999999999999998762 3 22 22 56777888 8999999999999999999988753
No 203
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=82.07 E-value=4 Score=34.13 Aligned_cols=62 Identities=18% Similarity=0.391 Sum_probs=47.4
Q ss_pred CCCEEEEEEcC-CCCHHHHHHHHHhhcCCCCCceEEE-eCCEEcCCCCccccCCC--CCCCEEEEE
Q 038333 51 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI--QKESTLHLV 112 (120)
Q Consensus 51 ~g~~~~i~v~~-~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~~L~d~~~L~~~~i--~~g~~i~v~ 112 (120)
.|....++... .+|+++||..|.+.+|.....+.++ -+|..+..++.|..|.- .+-.-|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 36777787776 5699999999999999998888877 56677888888998873 333345544
No 204
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=81.63 E-value=3.5 Score=23.52 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
..|+.+|.+.-++++|+++ ..-+.-+|.+.+|=.. |.+||.+++
T Consensus 25 P~SleeLl~ia~~kfg~~~-~~v~~~dgaeIdDI~~-----IRDgD~L~~ 68 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGFSA-TKVLNEDGAEIDDIDV-----IRDGDHLYL 68 (69)
T ss_pred CccHHHHHHHHHHHhCCCc-eEEEcCCCCEEeEEEE-----EEcCCEEEE
Confidence 4799999999999999973 3335566666655443 345777765
No 205
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=81.43 E-value=5.1 Score=23.97 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=34.3
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCEEc
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL 92 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~~L 92 (120)
....+.|++++|=.++|+.|++.+++++...+-. +.|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 5689999999999999999999999999888654 666643
No 206
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=81.36 E-value=9 Score=22.76 Aligned_cols=58 Identities=5% Similarity=0.082 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEc-CCCCccc---cCCCCCCCEEEEE
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLA---DYNIQKESTLHLV 112 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L-~d~~~L~---~~~i~~g~~i~v~ 112 (120)
...+.|+.+.|++++..-|.++.++++++ +-++.+...+ ..+.+++ +.- .++..+++.
T Consensus 17 k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~ 79 (87)
T cd01612 17 QKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVS 79 (87)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEE
Confidence 34577999999999999999999987655 4555555433 2334443 333 445566554
No 207
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=81.14 E-value=8.3 Score=22.23 Aligned_cols=60 Identities=13% Similarity=0.339 Sum_probs=39.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcC--CCCC-ceEEE----eCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEG--IPPD-QQRLI----FAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~--~~~~-~~~L~----~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
.+-.=.+++.|+++|+..|.+++. .|-+ .+.+. -.|--|+.+-...+. ..+++.|.++++
T Consensus 4 KFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~ 70 (73)
T PF10407_consen 4 KFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILK 70 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEec
Confidence 455557889999999999999877 3333 23322 234456666666665 457888888775
No 208
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=80.72 E-value=8.4 Score=22.19 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=43.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCEEcCCCCccccCCCCCCCEEEE
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
-..+.|+.++.....-+..++++.+|+..--++ -.|.-.++.++..+.-++.|+.+.+
T Consensus 17 ~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 17 YKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred ceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 345789999988888889999999988777665 5677788889988888888888765
No 209
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=80.54 E-value=2.9 Score=23.58 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=29.0
Q ss_pred CCCceEEE-EccEEcCCCCCccccccccCCeEEEEeec
Q 038333 3 PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 3 ~~~~q~l~-~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|++.=.|- -+|+.||-++.+.+|++..+.++++.++.
T Consensus 35 P~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 35 PPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 44444444 35899999999999999999999988764
No 210
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=80.50 E-value=11 Score=23.00 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=45.1
Q ss_pred CCCEEEEEEeC-CCCEEEEEEcCCCCHHHHHHHHHhh----cCCC-CC-ceEEEeCCE--EcCCCCccccCC-----CCC
Q 038333 40 RGGMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK----EGIP-PD-QQRLIFAGK--QLEDGRTLADYN-----IQK 105 (120)
Q Consensus 40 ~~~m~i~v~~~-~g~~~~i~v~~~~tV~~LK~~i~~~----~~~~-~~-~~~L~~~g~--~L~d~~~L~~~~-----i~~ 105 (120)
...+.|.|... ....+.+.++.+.|+.+|...+-.. ...+ .. +..|--.|. -|.++.+|.+|. ++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 34577777777 4457899999999999999888776 1221 12 566666664 466778888874 244
Q ss_pred CCEEEEE
Q 038333 106 ESTLHLV 112 (120)
Q Consensus 106 g~~i~v~ 112 (120)
+-.+.++
T Consensus 94 ~~~~~L~ 100 (106)
T PF00794_consen 94 GKDPHLV 100 (106)
T ss_dssp T--EEEE
T ss_pred CCCcEEE
Confidence 4455444
No 211
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=80.05 E-value=6.3 Score=23.21 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHhhcCCCC-CceEEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~-~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
-.|..+|+.+.++...++. ..+.|.-+|+.++++..++. +.++..+.+
T Consensus 20 A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~ 68 (81)
T cd06537 20 AASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFEL--LEDDTCLMV 68 (81)
T ss_pred ccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhh--CCCCCEEEE
Confidence 3579999999999999863 33344468999987766655 455555544
No 212
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=79.40 E-value=5.1 Score=30.92 Aligned_cols=76 Identities=14% Similarity=0.297 Sum_probs=63.2
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcCC---CCccccCCCCCCCEEEEEEEc
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~d---~~~L~~~~i~~g~~i~v~~~~ 115 (120)
....|.|+.++|..+.-+++.+.-+..+|.-+.+..++....+.|- |-.++..+ +++|.++.+.+...+.|+.+-
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4578889999999999999999999999999999888888777775 66676643 479999999999998888775
Q ss_pred C
Q 038333 116 R 116 (120)
Q Consensus 116 ~ 116 (120)
+
T Consensus 393 r 393 (506)
T KOG2507|consen 393 R 393 (506)
T ss_pred C
Confidence 4
No 213
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=78.96 E-value=1 Score=33.47 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.0
Q ss_pred eCCCCEEEEEEc-CCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCcc
Q 038333 49 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 98 (120)
Q Consensus 49 ~~~g~~~~i~v~-~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L 98 (120)
..+|+...+.+. ....+..||.++....+++++.+.+.+.+..|.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 356777788777 56789999999999999999999999999999888544
No 214
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=78.81 E-value=6.6 Score=23.27 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=33.5
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCC-CCCceEEE--eCCE--EcCCC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGK--QLEDG 95 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~-~~~~~~L~--~~g~--~L~d~ 95 (120)
....+.|.|++|..+|...++.++.+ .|+...|+ .+|. .|.|+
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 34678999999999999999999998 56777665 3453 56655
No 215
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=78.14 E-value=7.9 Score=22.70 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHhhcCCCC-CceEEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~-~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
-.|..+|+.+.++.++++. ..+.|.-+|++++|+..++. +.++..+.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~t--Lp~nt~l~v 68 (79)
T cd06538 20 ADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQA--LADNTVFMV 68 (79)
T ss_pred cCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhh--CCCCcEEEE
Confidence 3579999999999999953 23445568999987766665 344444433
No 216
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=77.33 E-value=7.2 Score=23.43 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCE
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 90 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~ 90 (120)
...+.+.|++.+|=.++|+.+++.+++++...+-. ..|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 35799999999999999999999999999888654 5554
No 217
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=76.47 E-value=2.3 Score=25.89 Aligned_cols=64 Identities=20% Similarity=0.384 Sum_probs=35.6
Q ss_pred CEEEEEEc---CCCCHHHHHHHHHhhcCCCCCceEEEeCCE--------EcCCC-Ccc---ccCCCCCCCEEEEEEEcCC
Q 038333 53 KTITLEVE---SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--------QLEDG-RTL---ADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 53 ~~~~i~v~---~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~--------~L~d~-~~L---~~~~i~~g~~i~v~~~~~g 117 (120)
+.+.++++ ...|+++|-..+....--+ +-.++..+. ..+|. ..| .+|-+++||+|..+..+-|
T Consensus 18 k~h~v~l~~~~~~~ti~~Li~~l~~nll~~--r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~FiSTLHG 95 (96)
T PF09138_consen 18 KKHKVSLPSDGEPATIKDLIDYLRDNLLKE--RPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFISTLHG 95 (96)
T ss_dssp SEEEEEE-SSCSC-BHHHHHHHHCCCT-SS--GHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEEETTT-
T ss_pred eeEEEEcCCCCCCcCHHHHHHHHHHhccCC--CHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEEccCCC
Confidence 57788887 5679999998887753322 222222221 11221 222 4688999999999988877
Q ss_pred C
Q 038333 118 G 118 (120)
Q Consensus 118 G 118 (120)
|
T Consensus 96 G 96 (96)
T PF09138_consen 96 G 96 (96)
T ss_dssp -
T ss_pred C
Confidence 6
No 218
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=76.19 E-value=3 Score=28.93 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~ 81 (120)
|-.+.+.+.+..|.+++|++|.+++|++..
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 446778999999999999999999998754
No 219
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=75.81 E-value=15 Score=29.25 Aligned_cols=73 Identities=32% Similarity=0.425 Sum_probs=44.8
Q ss_pred EEEEEEeCC--CCEEEEEEcCCCCHHHHHHHHHhh--cCC------CCCceEEE--eC--CE-EcCCC------------
Q 038333 43 MQIFVKTLT--GKTITLEVESSDTIDNVKAKIQDK--EGI------PPDQQRLI--FA--GK-QLEDG------------ 95 (120)
Q Consensus 43 m~i~v~~~~--g~~~~i~v~~~~tV~~LK~~i~~~--~~~------~~~~~~L~--~~--g~-~L~d~------------ 95 (120)
+.+.|-..+ .....++|-..+||.+.|++|-.. .+. .++++-|. .+ |+ .|.|.
T Consensus 190 ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkr 269 (539)
T PF08337_consen 190 LTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKR 269 (539)
T ss_dssp EEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE
T ss_pred EEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceE
Confidence 455544332 345788888899999999999543 222 33455443 22 22 44432
Q ss_pred -CccccCCCCCCCEEEEEEEc
Q 038333 96 -RTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 96 -~~L~~~~i~~g~~i~v~~~~ 115 (120)
.||+.|+|++|+++.++.+.
T Consensus 270 LNTL~HY~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 270 LNTLAHYKVPDGATVALVPKQ 290 (539)
T ss_dssp --BHHHHT--TTEEEEEEES-
T ss_pred eccHhhcCCCCCceEEEeecc
Confidence 36999999999999998875
No 220
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=75.38 E-value=10 Score=22.18 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHhhcCC---CCCceE-E-EeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 61 SSDTIDNVKAKIQDKEGI---PPDQQR-L-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 61 ~~~tV~~LK~~i~~~~~~---~~~~~~-L-~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..+|+++|++.+.++... -..... + ..+...+.+. ++-+++||.|.+.....||
T Consensus 26 ~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 26 VGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGL----DTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred HHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccc----cccCCCCCEEEEeCCCCCC
Confidence 356999999999777652 111111 1 2333334322 2346779999999888887
No 221
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=75.01 E-value=5 Score=24.48 Aligned_cols=30 Identities=37% Similarity=0.785 Sum_probs=22.5
Q ss_pred EEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 84 RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 84 ~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
.|.+.|++|..+.+|.+| +..+..-.++++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivK 32 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVK 32 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEE
Confidence 578999999999999999 655554444444
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=74.56 E-value=9.2 Score=22.26 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.+.|++.+|=.++|+.++..+++.+...+-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5789999999999999999999999998888654
No 223
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=74.31 E-value=5.8 Score=23.16 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.7
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEG 77 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~ 77 (120)
..++++.++|+.++|+.+.+.-.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 46789999999999999988754
No 224
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=74.25 E-value=11 Score=23.82 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=36.7
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCC---CCC--ceEEEe-----------------CCEE-cCCCCccccCCCCCCCEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGI---PPD--QQRLIF-----------------AGKQ-LEDGRTLADYNIQKESTL 109 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~---~~~--~~~L~~-----------------~g~~-L~d~~~L~~~~i~~g~~i 109 (120)
..+.|....+.|+.||-..|.+..-- +-. .++++| .|.. -+|++||++.+...||.|
T Consensus 37 ~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGDyi 116 (120)
T PF06487_consen 37 NELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGDYI 116 (120)
T ss_dssp TEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-EE
T ss_pred CeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCCEE
Confidence 46778888999999999998873221 001 223443 1222 367899999999999999
Q ss_pred EEEE
Q 038333 110 HLVL 113 (120)
Q Consensus 110 ~v~~ 113 (120)
.+.+
T Consensus 117 dvaI 120 (120)
T PF06487_consen 117 DVAI 120 (120)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8864
No 225
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=73.75 E-value=8.1 Score=22.33 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=21.2
Q ss_pred EEEEEEcC-CCCHHHHHHHHHhhcCC-CCCceEE
Q 038333 54 TITLEVES-SDTIDNVKAKIQDKEGI-PPDQQRL 85 (120)
Q Consensus 54 ~~~i~v~~-~~tV~~LK~~i~~~~~~-~~~~~~L 85 (120)
...+.++. ..+|.+||..|.+..++ ......|
T Consensus 11 ~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL 44 (74)
T PF08783_consen 11 YDTITFDGTSISVFDLKREIIEKKKLGKGTDFDL 44 (74)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHT---TTTEEE
T ss_pred ccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCE
Confidence 44577775 45999999999887776 3344444
No 226
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=72.39 E-value=18 Score=21.46 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=33.1
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC-ceEEEeCC
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG 89 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~-~~~L~~~g 89 (120)
.+|..+...++++.|-.+|.+++...++.+.+ .+.+.|-.
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~D 47 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWID 47 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 46788899999999999999999999998653 56666644
No 227
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=72.38 E-value=3.9 Score=30.56 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=50.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC-CCCCceEEEeCC---EEcC--CCCccccCCCCCCCE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 108 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~-~~~~~~~L~~~g---~~L~--d~~~L~~~~i~~g~~ 108 (120)
.|.|+.++|+....++.+.++|.-|-.-+..+.. .+-..++|+.+- +.|. .+.|+.++||++-.+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 4899999999888888888999888877766544 566788888654 5554 568999999998765
No 228
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=70.08 E-value=14 Score=21.91 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=30.9
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.+.|++.+|=.++|+.++..+++.+...+-.
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5789999999999999999999999999888654
No 229
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=69.63 E-value=19 Score=20.73 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=32.3
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE------eCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI------FAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~------~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
..+.+...+||.++-.+|....+-.. ..-++ ++|+...-+ +-+++||.|.+.
T Consensus 17 ~~liL~~GaTV~D~a~~iH~di~~~f-~~A~v~g~s~~~~gq~Vgl~-----~~L~d~DvVeI~ 74 (75)
T cd01666 17 EPVILRRGSTVEDVCNKIHKDLVKQF-KYALVWGSSVKHSPQRVGLD-----HVLEDEDVVQIV 74 (75)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHhC-CeeEEeccCCcCCCeECCCC-----CEecCCCEEEEe
Confidence 45778889999999999987543211 11122 345544433 445668888764
No 230
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=68.50 E-value=16 Score=22.13 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
...+.+.|++++|=.++|..+++.+++-+...+.+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl 55 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTL 55 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 35799999999999999999999999988888653
No 231
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=68.33 E-value=26 Score=21.85 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCEEEEEEeCCCC--EEEEEEcCCCCHHHHHHHHHhhcCCC-----CCceEEE
Q 038333 41 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLI 86 (120)
Q Consensus 41 ~~m~i~v~~~~g~--~~~i~v~~~~tV~~LK~~i~~~~~~~-----~~~~~L~ 86 (120)
+-|....+..+++ +..+.|++++|+.++.+.+-+++.+. +.++.|+
T Consensus 22 gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALY 74 (112)
T cd01782 22 GVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLY 74 (112)
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEE
Confidence 3378888877665 46799999999999999999998844 4466554
No 232
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=67.61 E-value=35 Score=26.87 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=49.9
Q ss_pred EEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE---eCCE--EcC--CCCccccCCCCCCC
Q 038333 35 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLE--DGRTLADYNIQKES 107 (120)
Q Consensus 35 ~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~---~~g~--~L~--d~~~L~~~~i~~g~ 107 (120)
+.++.+..+--.|..++.....+.+..++||.++-..++++.|...+ +.|+ .+|. .|. |.....+.++ ++
T Consensus 228 ~~v~~sDev~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~see-l~LV~v~s~GEkv~lqPnd~~v~tsL~l--n~ 304 (573)
T KOG2378|consen 228 CPVRGSDEVFCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYSEE-LILVKVSSSGEKVILQPNDRAVFTSLGL--NS 304 (573)
T ss_pred CCccCCCeeeEEEEecCceEEEEEeechhHHHHHHHHHHHHhccccc-eeEEEEccCCceeeecCCcceeeeeecc--cc
Confidence 33444455555666677788889999999999999999999999876 5444 4564 343 2233333333 34
Q ss_pred EEEEEEE
Q 038333 108 TLHLVLR 114 (120)
Q Consensus 108 ~i~v~~~ 114 (120)
.+++..|
T Consensus 305 rLfv~~r 311 (573)
T KOG2378|consen 305 RLFVVNR 311 (573)
T ss_pred eEEEEch
Confidence 5555443
No 233
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=66.90 E-value=5.8 Score=25.75 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=41.5
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcC------CCCCceEEEe------------------CCEEcCCCCccccCCCCCCCEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEG------IPPDQQRLIF------------------AGKQLEDGRTLADYNIQKESTLH 110 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~------~~~~~~~L~~------------------~g~~L~d~~~L~~~~i~~g~~i~ 110 (120)
..+....++|+.+|-.+|.+..- .. -++.++| +.+..+|+++|++.+++-||.+.
T Consensus 54 lQiYtW~datL~ELtsLvkevnpeaR~kgt~-f~fa~Vf~d~~~~~y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~lD 132 (151)
T KOG3391|consen 54 LQIYTWMDATLRELTSLVKEVNPEARKKGTS-FDFAVVFPDKKSPRYIVREVGTTCLGRKGIDDNKTLQQTKFEIGDYLD 132 (151)
T ss_pred eeEeehhhhhHHHHHHHHHHcCHHHhccCce-EEEEEEeccCCCCCceeeeecccccCcccCCccchhhhCCccccceEE
Confidence 44455567899999988877321 10 1223333 12345789999999999999999
Q ss_pred EEEEcC
Q 038333 111 LVLRLR 116 (120)
Q Consensus 111 v~~~~~ 116 (120)
|.+..+
T Consensus 133 VaI~~p 138 (151)
T KOG3391|consen 133 VAITPP 138 (151)
T ss_pred EEecCc
Confidence 998865
No 234
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.52 E-value=8.2 Score=31.95 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=42.1
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe----CCEEc--CCCCccccCCCCCCCEEEE
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~----~g~~L--~d~~~L~~~~i~~g~~i~v 111 (120)
.+.+.|+...+++.+|+.|++..+++.+.++++- +|..+ .++.+|... -++.+|.+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI 939 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITI 939 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEE
Confidence 5678899999999999999999999999998872 34444 366677664 34555544
No 235
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=65.85 E-value=29 Score=21.34 Aligned_cols=74 Identities=27% Similarity=0.297 Sum_probs=48.6
Q ss_pred CCEEEEEEeCC-CCEEEEEEcCCCCHHHHHHHHHhhc----C--CCCC-ceEEEeCCE--EcCCCCccccCC-----CCC
Q 038333 41 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGK--QLEDGRTLADYN-----IQK 105 (120)
Q Consensus 41 ~~m~i~v~~~~-g~~~~i~v~~~~tV~~LK~~i~~~~----~--~~~~-~~~L~~~g~--~L~d~~~L~~~~-----i~~ 105 (120)
+.+.|.|...+ ...+.+.++++.|+.+|.+.+-.+. + -+++ +..|.-.|+ -|..+.+|.+|. ++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 45566666554 3468899999999999988876651 1 2233 566666665 355677777774 466
Q ss_pred CCEEEEEEE
Q 038333 106 ESTLHLVLR 114 (120)
Q Consensus 106 g~~i~v~~~ 114 (120)
|..+++++.
T Consensus 96 ~~~~~L~L~ 104 (108)
T smart00144 96 GREPHLVLM 104 (108)
T ss_pred CCCceEEEE
Confidence 777776654
No 236
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=65.27 E-value=9.7 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEG 77 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~ 77 (120)
..+.++.++|+.++|..+.+...
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 35788999999999999988754
No 237
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.64 E-value=26 Score=20.42 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=47.4
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe-CCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~-~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.+.++..+....+-+--++++.+|+..-.++- +|--++..++-...-++.|+.+.++.|-+-|
T Consensus 30 v~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrvg 93 (94)
T KOG3483|consen 30 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 93 (94)
T ss_pred eecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccccC
Confidence 34566677666666677888899887776664 5555677788888888999999998887655
No 238
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=64.61 E-value=21 Score=19.37 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=37.8
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
|.|..++|+... ++...|+.++-..|....+-. ..--..+|+..+-+..| ++|++|.+.
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~--~~~A~Vng~~vdl~~~L-----~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKR--AVAAKVNGQLVDLDHPL-----EDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHC--EEEEEETTEEEETTSBB------SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhh--eeEEEEcCEECCCCCCc-----CCCCEEEEE
Confidence 345568887555 778899999999998775422 11223677666544444 457777664
No 239
>CHL00030 rpl23 ribosomal protein L23
Probab=63.06 E-value=23 Score=21.34 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.+.|++++|=.++|+.|+..+++.+...+-.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~ 53 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH 53 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 5799999999999999999999999988877654
No 240
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=58.21 E-value=35 Score=22.29 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=26.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHH
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVK 69 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK 69 (120)
++++++|++...+|+.+.+++.+..|+-+.-
T Consensus 32 ~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal 62 (143)
T PTZ00490 32 TPGKVKVCVKKRDGTHCDVEVPVGMSLMHAL 62 (143)
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCccHHHHH
Confidence 5788999999999999999999999887643
No 241
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=56.91 E-value=35 Score=19.91 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhhcCCCCCce--EEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~~--~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
-.|..+|+.+.++.+.++.... .|.-+|+++. +..+.. +.++..+.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVt-EeyF~t--Lp~nT~lmv 68 (77)
T cd06535 20 AKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVT-EEYFPT--LPDNTELVL 68 (77)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEeh-HHHHhc--CCCCcEEEE
Confidence 3579999999999999986544 4556888884 333333 344544433
No 242
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=56.87 E-value=8.5 Score=28.60 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=39.3
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcC--CCCCceEEEeCCEEcCCCCccccC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~--~~~~~~~L~~~g~~L~d~~~L~~~ 101 (120)
.-+.++..+||.+||.-+..+.+ -+..++.+++++..|.+..||.+.
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 45788889999999999999999 355677888999899888888853
No 243
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=55.58 E-value=34 Score=18.91 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=31.5
Q ss_pred EEEEEcCCCCHHHHHHHHHhhc--CCCCCceEEEeCCEEcCC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLED 94 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~--~~~~~~~~L~~~g~~L~d 94 (120)
-.+.|+.+.|..+|-..+.+.. .-.+-.+.++.+|..+.+
T Consensus 18 ~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 18 TPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRT 59 (65)
T ss_pred CCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeec
Confidence 4688999999999999999887 334456678888988754
No 244
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=54.65 E-value=44 Score=19.91 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCce-EEEeCCEEc-CCCCcccc
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRTLAD 100 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~-~L~~~g~~L-~d~~~L~~ 100 (120)
...+.++.++|++.+-.-+.+..++.+++- -++.+..-- ..+.++++
T Consensus 17 ~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~ 65 (87)
T PF04110_consen 17 QKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGD 65 (87)
T ss_dssp --EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHH
Confidence 457899999999999999999999865544 444444332 23444443
No 245
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=53.31 E-value=40 Score=22.48 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 90 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~ 90 (120)
..+.|.|++++|=.++|..|+..+++.+...+-. ..|+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 5699999999999999999999999999888765 4443
No 246
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.22 E-value=48 Score=19.95 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=40.2
Q ss_pred CCEEEEEEcC--CCCHHHHHHHHHhhcCCCCCceEEEeCCE-------EcCC-C-Ccccc--CCCCCCCEEEEEEEcCCC
Q 038333 52 GKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLED-G-RTLAD--YNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 52 g~~~~i~v~~--~~tV~~LK~~i~~~~~~~~~~~~L~~~g~-------~L~d-~-~~L~~--~~i~~g~~i~v~~~~~gG 118 (120)
.+.+.+.++. ..+|+.+-..+....--|...--+..+|+ ..+| + ..+.. |.+++||.|.++..+-||
T Consensus 17 qR~~el~~~~~e~~~vg~liD~~~~~i~~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ledgDiIvfistlHGg 96 (96)
T COG5131 17 QREIELTREEVEGSSVGTLIDALRYFIYAPTRDSIFIEHGELRPGIICLINDMDWELLEKERYPLEDGDIIVFISTLHGG 96 (96)
T ss_pred ceeeEEEEcccCCcchhhHHHHHHHHHhCCccceeeecCCCCcccEEEEEcCccHhhhhcccccCCCCCEEEEEecccCC
Confidence 3455666654 45788888888773222333333334553 1222 1 23444 889999999999888776
No 247
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=52.48 E-value=6.3 Score=22.27 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=14.8
Q ss_pred CHHHHHHHHHhhcCCCCCce
Q 038333 64 TIDNVKAKIQDKEGIPPDQQ 83 (120)
Q Consensus 64 tV~~LK~~i~~~~~~~~~~~ 83 (120)
|+.++.+.+++.+|++++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~~i 20 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVEDI 20 (70)
T ss_dssp -HHHHHHHHHHHTT--HHHH
T ss_pred CHHHHHHHHHHHHCCCHHHH
Confidence 68899999999999987654
No 248
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=52.00 E-value=27 Score=28.31 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCC---------CCHHHHHHHHHhhcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESS---------DTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~---------~tV~~LK~~i~~~~~~~~ 80 (120)
-..+.|+|...+|+...+..... .|+.+||.+|++++|+..
T Consensus 246 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~~ 295 (603)
T PRK05841 246 NRKLNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLDL 295 (603)
T ss_pred CCeEEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhcccccc
Confidence 35688889988887655544333 379999999999998654
No 249
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=51.75 E-value=55 Score=20.17 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=30.8
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC---CceEEEeCC
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFAG 89 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~---~~~~L~~~g 89 (120)
++|-..+|++..+.|....+-.+++.++-.++|.+. +....+.++
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v~d~ 50 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYVLDG 50 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEEE-S
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEEecc
Confidence 455668899999999999999999999999999876 333344555
No 250
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=50.62 E-value=53 Score=19.61 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=22.4
Q ss_pred CceEEEEccEEcCCCCCccccccccCCeEEEEee
Q 038333 5 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 38 (120)
Q Consensus 5 ~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~ 38 (120)
+.=.+|.+...|+++++|.+..+.....+.+.+.
T Consensus 31 ~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 31 SDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred CCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 4446788898899999999999999999887753
No 251
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=49.82 E-value=35 Score=19.77 Aligned_cols=46 Identities=7% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 66 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 66 ~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
..+|..++..+|.+.+..++..+..-=.-...+...-+.-|+.|++
T Consensus 4 ~~~r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f 49 (79)
T PF13699_consen 4 ESIRSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVGNDIYF 49 (79)
T ss_pred HHHHHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEECCEEEE
Confidence 3589999999999999999988743222223344455666778876
No 252
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=49.40 E-value=58 Score=24.15 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHhhc--------------C-CCCCceEEEeCCEEcCCCCccccCC---CCCCCEEEEEEEcC
Q 038333 61 SSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRLR 116 (120)
Q Consensus 61 ~~~tV~~LK~~i~~~~--------------~-~~~~~~~L~~~g~~L~d~~~L~~~~---i~~g~~i~v~~~~~ 116 (120)
.-.-|..++..|++++ . -|.+.+.|.++|+.|+.+.||+... .+.+.-|.+..|..
T Consensus 256 ~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 256 RMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred chhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 3446888888888888 2 4566778999999999998877654 47777777877754
No 253
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=49.11 E-value=9.1 Score=20.76 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhhcCCCCCce
Q 038333 64 TIDNVKAKIQDKEGIPPDQQ 83 (120)
Q Consensus 64 tV~~LK~~i~~~~~~~~~~~ 83 (120)
|+.++.+.+++.+|++++++
T Consensus 1 ~~~~I~~~Va~~~~i~~~~i 20 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPEDL 20 (60)
T ss_pred CHHHHHHHHHHHhCCCHHHH
Confidence 57889999999999988765
No 254
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=48.63 E-value=13 Score=21.71 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=20.4
Q ss_pred HHHhhcCCCCCceEEEe---CCEEcCCCCccccCCCC
Q 038333 71 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQ 104 (120)
Q Consensus 71 ~i~~~~~~~~~~~~L~~---~g~~L~d~~~L~~~~i~ 104 (120)
.|++.+-+.|+...|.- ++.+|+-+++|.++||+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGir 38 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIR 38 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-S
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHH
Confidence 47788888888777773 55688889999999997
No 255
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=47.05 E-value=39 Score=19.98 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHh
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQD 74 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~ 74 (120)
.+.|...+|.++.++|+.++-+..-|+.|+.
T Consensus 37 m~iitf~ngatfqvevpgsqhi~sqkk~ier 67 (102)
T PF01376_consen 37 MVIITFKNGATFQVEVPGSQHIDSQKKAIER 67 (102)
T ss_dssp EEEEEETTS-EEEE--SSTTSTTTHHHHHHH
T ss_pred EEEEEecCCcEEEEecCCccchhhhHHHHHH
Confidence 3556778999999999988776665655543
No 256
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=46.08 E-value=62 Score=19.14 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCHHHHHHHH---HhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 54 TITLEVESSDTIDNVKAKI---QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i---~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
...++++..+||.+--+.- +..-.+..+..++=..|+....+.. +++||.|.+.-.+
T Consensus 15 ~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~-----L~~GDRVEIYRPL 74 (84)
T PF03658_consen 15 ILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTV-----LRDGDRVEIYRPL 74 (84)
T ss_dssp EEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B-------TT-EEEEE-S-
T ss_pred EEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCc-----CCCCCEEEEeccC
Confidence 4568899999998866532 2222355566666555666654444 4559999887433
No 257
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=45.03 E-value=81 Score=26.36 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=45.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+|.|-++.|+ .+.++...|+-|+=-.|....|-....- ..+|+... -++.+++||+|.+...
T Consensus 405 ~V~VfTPkG~--~~~Lp~gaT~lDfAy~iHt~iG~~~~gA--kvng~~v~-----l~~~L~~GD~VeIits 466 (743)
T PRK10872 405 RVYVFTPKGD--VVDLPAGSTPLDFAYHIHSDVGHRCIGA--KIGGRIVP-----FTYQLQMGDQIEIITQ 466 (743)
T ss_pred eEEEECCCCC--eEEcCCCCcHHHHHHHHhHHHHhhceEE--EECCEECC-----CCcCCCCCCEEEEEeC
Confidence 4677778886 7888899999999999998877543222 35776654 3455677999998754
No 258
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=43.90 E-value=14 Score=20.83 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=10.6
Q ss_pred CccccCCCCCCCEEEE
Q 038333 96 RTLADYNIQKESTLHL 111 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v 111 (120)
..|...|+++||+|.+
T Consensus 47 ~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 47 KALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHTTT--TT-EEEE
T ss_pred HHHHHcCCCCCCEEEE
Confidence 4688999999999865
No 259
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=43.36 E-value=62 Score=18.96 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=29.4
Q ss_pred CHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 64 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 64 tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
|-++-++.+ +++++.+... .+.+.++-....||.+.|+.|.+.-+
T Consensus 19 s~eE~~~lL-~~y~i~~~qL-----P~I~~~DPv~r~~g~k~GdVvkI~R~ 63 (79)
T PRK09570 19 SEEEAKKLL-KEYGIKPEQL-----PKIKASDPVVKAIGAKPGDVIKIVRK 63 (79)
T ss_pred CHHHHHHHH-HHcCCCHHHC-----CceeccChhhhhcCCCCCCEEEEEEC
Confidence 445555444 4456654432 34556666788889999999988765
No 260
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=43.29 E-value=47 Score=21.83 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCEEEEEEcC-CCCHHHHHHHHHhhcC----CCCCce----EEE-eCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEG----IPPDQQ----RLI-FAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~-~~tV~~LK~~i~~~~~----~~~~~~----~L~-~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
|+|+|..- .....+-+.. +.||.+|-++-..++. ..++.+ .|. -.|.+|+.+..|.+. +.+.+.|..+
T Consensus 1 mkvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV-~dd~d~liAv 78 (145)
T PF12053_consen 1 MKVTVCFG-RTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDV-VDDRDQLIAV 78 (145)
T ss_dssp -EEEEEET-TEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHH-S-TTEEEEEE
T ss_pred CeEEEEeC-CeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEe-ccChhhhhee
Confidence 77888854 3455666665 5799999877766554 333323 233 256688766666665 3356666555
Q ss_pred EE
Q 038333 113 LR 114 (120)
Q Consensus 113 ~~ 114 (120)
..
T Consensus 79 yd 80 (145)
T PF12053_consen 79 YD 80 (145)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 261
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=42.39 E-value=74 Score=18.92 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHH
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNV 68 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~L 68 (120)
.+|++..+.++...+.+.+..|+.+.
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tLLda 28 (97)
T TIGR02008 3 YKVTLVNPDGGEETIECPDDQYILDA 28 (97)
T ss_pred EEEEEEECCCCEEEEEECCCCcHHHH
Confidence 56777667888889999999998665
No 262
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=42.34 E-value=68 Score=18.50 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
-++-+ .+-+++++.++.+ .+.+.++-....+|.+.|+.|.+.-+-.
T Consensus 17 ~eE~~-~lL~~y~i~~~qL-----P~I~~~DPv~r~~g~k~GdVvkI~R~S~ 62 (74)
T PF01191_consen 17 EEEKK-ELLKKYNIKPEQL-----PKILSSDPVARYLGAKPGDVVKIIRKSE 62 (74)
T ss_dssp HHHHH-HHHHHTT--TTCS-----SEEETTSHHHHHTT--TTSEEEEEEEET
T ss_pred HHHHH-HHHHHhCCChhhC-----CcccccChhhhhcCCCCCCEEEEEecCC
Confidence 34444 3444457765443 4455666678888999999999876643
No 263
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=42.09 E-value=61 Score=21.29 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.|.|+..++=.++|+.|+..+++.+...+-.
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 116 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTL 116 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeE
Confidence 5799999999999999999999999988877544
No 264
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=41.88 E-value=76 Score=18.95 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=28.6
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCCC--CceEEE
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 86 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~~--~~~~L~ 86 (120)
|....+.|++++|+.+..+.+-.++.+.- .++-|+
T Consensus 12 gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FALy 48 (87)
T cd01784 12 GSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALY 48 (87)
T ss_pred CceeEEEEecCCCHHHHHHHHHHhccccCCHHHeEEE
Confidence 67788999999999999999999999743 444454
No 265
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=40.42 E-value=19 Score=20.33 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.8
Q ss_pred CCccccCCCCCCCEEEEE
Q 038333 95 GRTLADYNIQKESTLHLV 112 (120)
Q Consensus 95 ~~~L~~~~i~~g~~i~v~ 112 (120)
...|.+.|+++||+|.+-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 356899999999999763
No 266
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=40.34 E-value=29 Score=21.76 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHH
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 72 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i 72 (120)
|+|.|.. +++.+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 5666763 4677888888888888777766
No 267
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=40.02 E-value=88 Score=19.64 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=38.0
Q ss_pred CCCEEEEEEeCCCC------EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCEEcCCCCc
Q 038333 40 RGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRT 97 (120)
Q Consensus 40 ~~~m~i~v~~~~g~------~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~~L~d~~~ 97 (120)
+..+.+.|...+.+ ...+-|+.+.||+++-..|..+..++++.--++ -++.......+
T Consensus 26 P~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ 90 (116)
T KOG1654|consen 26 PDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSAT 90 (116)
T ss_pred CCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhh
Confidence 44556666533322 234567788999999999999999988766554 45554444333
No 268
>KOG4261 consensus Talin [Cytoskeleton]
Probab=39.67 E-value=33 Score=28.83 Aligned_cols=66 Identities=32% Similarity=0.439 Sum_probs=53.8
Q ss_pred ccEEcCCCCCccccccccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC
Q 038333 12 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 12 ~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~ 80 (120)
+|.-|++.+++.+|-+..+.++-..-+.+ .+.|+..+|...++.++...+|.+|---|+.+.||..
T Consensus 57 k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igItn 122 (1003)
T KOG4261|consen 57 KGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITN 122 (1003)
T ss_pred cceeecCCccHHHHHHhcccccchhhhcc---cceeeecccccceeeecccccHHHHHHHHHhccCccc
Confidence 47778999999999888888876554333 3557778899999999999999999999999999743
No 269
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.34 E-value=33 Score=21.48 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=33.3
Q ss_pred EEcC-CCCHHHHHHHHHhhcC----CCCC------ceEEE----------------eCC-EEcC-CCCccccCCCCCCCE
Q 038333 58 EVES-SDTIDNVKAKIQDKEG----IPPD------QQRLI----------------FAG-KQLE-DGRTLADYNIQKEST 108 (120)
Q Consensus 58 ~v~~-~~tV~~LK~~i~~~~~----~~~~------~~~L~----------------~~g-~~L~-d~~~L~~~~i~~g~~ 108 (120)
+++. +.||.+++.-+.+... +||- ..+++ +.. ..|+ +.++|..|||.+...
T Consensus 28 d~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETE 107 (127)
T KOG4147|consen 28 DVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETE 107 (127)
T ss_pred ccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchh
Confidence 4554 7789888877766654 3321 11222 122 3565 568999999998776
Q ss_pred EEE
Q 038333 109 LHL 111 (120)
Q Consensus 109 i~v 111 (120)
|..
T Consensus 108 is~ 110 (127)
T KOG4147|consen 108 ISF 110 (127)
T ss_pred hhh
Confidence 643
No 270
>PF10610 Tafi-CsgC: Thin aggregative fimbriae synthesis protein; InterPro: IPR014491 Thin aggressive fibres known as curli fibres or fimbriae (curli; Tafi) are cell-surface protein polymers found in Salmonella typhimurium and Escherichia coli that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation []. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), which differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp and the controlling operon termed agf; however subsequent isolation of the homologous operon in E coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix. The gene agfC is found to be transcribed at low levels, localised to the periplasm in a mature form, and in combination with AgfE is important for AgfA extracellular assembly, which facilitates the synthesis of Tafi. The genes involved in Tafi production are organised into two adjacent divergently transcribed operons, agfBAC and agfDEFG, both of which are required for biosynthesis and assembly [].; PDB: 2XSK_A 2Y2T_A 2Y2Y_A.
Probab=38.16 E-value=24 Score=21.75 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=12.8
Q ss_pred cCCCCCCCEEEEEEEcCCCC
Q 038333 100 DYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 100 ~~~i~~g~~i~v~~~~~gG~ 119 (120)
+++|.+||.+.+++.+.+|+
T Consensus 72 s~ni~p~D~v~I~VtvSDG~ 91 (106)
T PF10610_consen 72 SFNISPGDKVKIIVTVSDGK 91 (106)
T ss_dssp EEE--TT-EEEEEEEEE-SS
T ss_pred EEEeCCCCeEEEEEEEcCCC
Confidence 45688999999999887774
No 271
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=37.26 E-value=33 Score=18.62 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHh
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 74 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~ 74 (120)
|.|.+.+.+|+.+.++...-.--.-|+..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 56888899998887775543344455666653
No 272
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=36.76 E-value=43 Score=20.58 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=19.3
Q ss_pred CHHHHHHHHHhhcCCCCCceEEEeC
Q 038333 64 TIDNVKAKIQDKEGIPPDQQRLIFA 88 (120)
Q Consensus 64 tV~~LK~~i~~~~~~~~~~~~L~~~ 88 (120)
-.+.|-+.+++..|+|++++-+.|.
T Consensus 75 ~s~~i~~~l~~~LgIp~~Riyi~f~ 99 (114)
T PF01187_consen 75 YSAAITEFLEEELGIPPDRIYINFH 99 (114)
T ss_dssp HHHHHHHHHHHHHT--GGGEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCceEEEEE
Confidence 3677888899999999999988764
No 273
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=36.60 E-value=27 Score=17.10 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHHhh
Q 038333 61 SSDTIDNVKAKIQDK 75 (120)
Q Consensus 61 ~~~tV~~LK~~i~~~ 75 (120)
.+.||++||..+.+.
T Consensus 2 ~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 2 KSLTVAQLKRILDEH 16 (35)
T ss_dssp TT--SHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 357999999888775
No 274
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=36.11 E-value=42 Score=16.08 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHhhcCCCCC
Q 038333 62 SDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~ 81 (120)
..||.+||+.+.+. |+|..
T Consensus 3 ~l~v~eLk~~l~~~-gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKER-GLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHT-TS-ST
T ss_pred cCcHHHHHHHHHHC-CCCCC
Confidence 56899999766654 66643
No 275
>PF01577 Peptidase_S30: Potyvirus P1 protease; InterPro: IPR002540 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The potyviridae are a family of positive strand RNA viruses, members of which include Zucchini yellow mosaic virus, and Turnip mosaic virus (strain Japanese) which cause considerable losses of crops worldwide. This entry represents a C-terminal region from various plant potyvirus P1 proteins (found at the N terminus of the polyprotein). The C terminus of P1 is a serine peptidase belonging to MEROPS peptidase family S30 (clan PA(S)). It is the protease responsible for autocatalytic cleavage between P1 and the helper component protease, which is a cysteine peptidase belonging to MEROPS peptidase family C6 IPR001456 from INTERPRO [, ]. The P1 protein may be involved in virus-host interactions [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=35.02 E-value=1.6e+02 Score=20.55 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=50.9
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC--CCCCceEE-EeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRL-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~--~~~~~~~L-~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
+.|.+++..|.....++..+.....+-..++.... ...+...+ =.+|-.++...... .+-..++.+.|.-|..|
T Consensus 150 ~kv~~~He~G~~~r~Dl~~~~~~~~i~~~~a~~~~~~~~~~~~~~~G~SG~vl~~~~~~~-~~~~~~~~FIVRGr~~G 226 (245)
T PF01577_consen 150 LKVETKHERGKRKRRDLNIDEFTESILRLLAKKTYRGRIVDDIKIKGDSGLVLPRRKLIG-FGRTRDDFFIVRGRHEG 226 (245)
T ss_pred EEEECCccCCCcccEECCccHHHHHHHHHHHhhcCCCcccccceeccceEEEEeCCcccC-ccccCCCeEEEEeccCC
Confidence 45555677888888888888888888888887743 34455666 23455777666566 77777777777766653
No 276
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=34.71 E-value=44 Score=20.90 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=46.0
Q ss_pred CEEEEEEeC-CCCEEEEEEcCCCCHHHHHHHHHhhcC--CCCCceEEEeCCEEcCCCCccccCCC-CCCCEEEEEEEcCC
Q 038333 42 GMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLRG 117 (120)
Q Consensus 42 ~m~i~v~~~-~g~~~~i~v~~~~tV~~LK~~i~~~~~--~~~~~~~L~~~g~~L~d~~~L~~~~i-~~g~~i~v~~~~~g 117 (120)
-+.+.|... +++.+.+- .++=+.|..-++.... .+-++++|..+|..=-+-..+.+..+ .|+|++-+.+...|
T Consensus 18 LvpaIvQd~~t~eVLMla---ymN~eAl~kTleTg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~g 94 (111)
T COG0139 18 LVPAIVQDAETGEVLMLA---YMNEEALAKTLETGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIG 94 (111)
T ss_pred eEEEEEEecCCCcEEEEE---ecCHHHHHHHHhcCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCC
Confidence 344555443 34444443 3344566666655444 35678889888865444445555544 78999999999977
Q ss_pred CC
Q 038333 118 GE 119 (120)
Q Consensus 118 G~ 119 (120)
|.
T Consensus 95 g~ 96 (111)
T COG0139 95 GP 96 (111)
T ss_pred CC
Confidence 64
No 277
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=33.62 E-value=1.1e+02 Score=18.56 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=30.0
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHhhcCCC--CCceEEE
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 86 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~--~~~~~L~ 86 (120)
+.+....+.|++++|+.+..+.+-.++.+. |.++-|+
T Consensus 14 p~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALY 52 (96)
T cd01778 14 PKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKFALF 52 (96)
T ss_pred cCCceeEEEEecCCcHHHHHHHHHHhheeccCCcceEEE
Confidence 567788999999999999999999999974 3445554
No 278
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=33.38 E-value=1.9e+02 Score=23.98 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=45.1
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
=+|.|-++.|+ .+.++...|+.|+=-.|....|.... .-.-+|+... -++-+++||+|.+....
T Consensus 360 ~~i~vfTPkG~--~~~lp~gst~~DfAy~ih~~~g~~~~--~a~vng~~v~-----l~~~l~~gd~vei~t~~ 423 (683)
T TIGR00691 360 EEIYVFTPKGD--VVELPSGSTPVDFAYAVHTDVGNKCT--GAKVNGKIVP-----LDKELENGDVVEIITGK 423 (683)
T ss_pred CceEEECCCCe--EEEcCCCCCHHHHHHHHhHHhHhcee--EEEECCEECC-----CCccCCCCCEEEEEeCC
Confidence 35677778774 67888999999999999887765421 1225676554 34556779999987543
No 279
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=33.27 E-value=1.6e+02 Score=23.85 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=37.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCC-CCCceEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI 86 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~-~~~~~~L~ 86 (120)
.++-|.|..-+|....+.|+..+|..++.+.++++..+ .-++..|+
T Consensus 187 rklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~Lv 233 (622)
T KOG3751|consen 187 RKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLV 233 (622)
T ss_pred cceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeee
Confidence 34567777788999999999999999999999998775 33566665
No 280
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=33.04 E-value=1.2e+02 Score=18.53 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.1
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCC---CceEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI 86 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~---~~~~L~ 86 (120)
..+.|+.++|+.++-...-.++|+.. ++.+|+
T Consensus 19 ~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~Lv 53 (97)
T cd01783 19 VSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLI 53 (97)
T ss_pred EEEEecccchHHHHHHHHHHHhCcccCCccccEEE
Confidence 46889999999999999999999743 566664
No 281
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=33.03 E-value=32 Score=24.48 Aligned_cols=16 Identities=31% Similarity=0.737 Sum_probs=13.7
Q ss_pred CCCEEEEEEEcCCCCC
Q 038333 105 KESTLHLVLRLRGGEF 120 (120)
Q Consensus 105 ~g~~i~v~~~~~gG~~ 120 (120)
..-.+++++|++||.|
T Consensus 50 ~~ipv~~MIRPRgGdF 65 (241)
T COG3142 50 SKIPVYVMIRPRGGDF 65 (241)
T ss_pred cCCceEEEEecCCCCc
Confidence 4557899999999988
No 282
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=32.50 E-value=39 Score=18.67 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=14.6
Q ss_pred CccccCCCCCCCEEEEEEE
Q 038333 96 RTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v~~~ 114 (120)
..|.+.|+.+|+.|.+.-+
T Consensus 26 ~~L~~lGl~~G~~i~v~~~ 44 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRK 44 (74)
T ss_dssp HHHHHCT-STTEEEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEe
Confidence 4588889999999988855
No 283
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=32.48 E-value=2.1e+02 Score=21.74 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=41.9
Q ss_pred EEEEEEeCCCC---EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEE--cCCCCccccCCCCCCCEEEEEEE
Q 038333 43 MQIFVKTLTGK---TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 43 m~i~v~~~~g~---~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~--L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+.|..+.+++. .-++-+....||.|+.++|+..+--.- +.-+++ |+- -.+.+.=-++-+.|+|.+.++.|
T Consensus 291 iRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~F-ryA~VW-GkSvk~~~QrVG~dHvLeD~DIV~I~~k 365 (365)
T COG1163 291 IRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENF-RYARVW-GKSVKHPGQRVGLDHVLEDEDIVEIHAK 365 (365)
T ss_pred EEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhc-ceEEEe-ccCCCCCccccCcCcCccCCCeEEEeeC
Confidence 66777766554 235677788999999999988753221 112222 322 22334444555677888887653
No 284
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=31.54 E-value=35 Score=24.67 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=42.0
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC--------------------EEcCC----CCccccCCCCCCC
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--------------------KQLED----GRTLADYNIQKES 107 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g--------------------~~L~d----~~~L~~~~i~~g~ 107 (120)
|....++++..++|.+.+..+.+...+.+...++.+.+ ..+.| +.-+..-++..|+
T Consensus 12 gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~llk~iahl~~p~mkEh~f~vti~~Dk~irnq~~sg~nvn~gs 91 (278)
T KOG4842|consen 12 GNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALNLLKEIAHLVSPLMKEHHFKVTILVDKYIRNQRLSGMNVNHGS 91 (278)
T ss_pred CcEEEEEeccccccCCCCcccceeeeeccchHHHHhhhhhhhhhhhhhhhhccccceeEEeehhHHHhhhhhccccCCcc
Confidence 45566677777777777777777766666665554432 01112 2346677789999
Q ss_pred EEEEEEEcCC
Q 038333 108 TLHLVLRLRG 117 (120)
Q Consensus 108 ~i~v~~~~~g 117 (120)
++.+..|+..
T Consensus 92 ki~lslr~~~ 101 (278)
T KOG4842|consen 92 KIMLSLRCST 101 (278)
T ss_pred eEEEEeeccc
Confidence 9999888543
No 285
>KOG4091 consensus Transcription factor [Transcription]
Probab=31.24 E-value=1.6e+02 Score=23.23 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=45.8
Q ss_pred CEEEEEEeCCCC--EEEEEEcCCCCHHHHHHHHHhhcCCCCCce-EEEeCCE----EcCCCCccccCCCCCCCEEEEEEE
Q 038333 42 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGK----QLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 42 ~m~i~v~~~~g~--~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~-~L~~~g~----~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
.+.+-|+-.+.. ++.---....|+..|-++|+..++++++.+ +++..|+ ..-|+..+..| ..+++.|.-++.
T Consensus 372 ~v~lYvr~e~e~~~vy~al~~~~~t~~gla~aIa~k~~i~~~~i~~vYkq~~kGI~v~idDemi~~y-~ned~fil~~~~ 450 (463)
T KOG4091|consen 372 RVTLYVRKESEQEYVYHALHLVPPTVSGLAEAIANKYLISPDKISRVYKQGPKGILVKIDDEMIKNY-CNEDCFILNVES 450 (463)
T ss_pred ceEEEEeccCCccccccchhccChhHHHHHHHHHHHhcCChhhhhheeecCCcccEEecCHHHHhhc-cCcceeEEeeee
Confidence 377888866655 333223346789999999999999998888 4544443 22255556555 444544444444
Q ss_pred cC
Q 038333 115 LR 116 (120)
Q Consensus 115 ~~ 116 (120)
..
T Consensus 451 a~ 452 (463)
T KOG4091|consen 451 AE 452 (463)
T ss_pred cc
Confidence 43
No 286
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=30.99 E-value=39 Score=24.22 Aligned_cols=13 Identities=46% Similarity=1.063 Sum_probs=11.6
Q ss_pred EEEEEEEcCCCCC
Q 038333 108 TLHLVLRLRGGEF 120 (120)
Q Consensus 108 ~i~v~~~~~gG~~ 120 (120)
.|++++|+++|.|
T Consensus 53 pv~vMIRPR~gdF 65 (248)
T PRK11572 53 PVHPIIRPRGGDF 65 (248)
T ss_pred CeEEEEecCCCCC
Confidence 4889999999988
No 287
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=30.99 E-value=2.4e+02 Score=21.52 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=24.0
Q ss_pred CCCCCceEEEEccEEcCCCCCcccc--ccccCCeEEEEee
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 38 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y--~i~~~s~i~~~~~ 38 (120)
|+.+.++-+..+|+.+.+...+..+ ....+..+.+.+.
T Consensus 274 GL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~ 313 (428)
T TIGR02037 274 GLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGIL 313 (428)
T ss_pred CCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEE
Confidence 4566778888999998776555444 2234555555543
No 288
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=30.70 E-value=36 Score=18.52 Aligned_cols=23 Identities=9% Similarity=0.458 Sum_probs=15.8
Q ss_pred EcCCCCHHHHHHHHHhhcCCCCC
Q 038333 59 VESSDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 59 v~~~~tV~~LK~~i~~~~~~~~~ 81 (120)
++...|+.++-+.++++++++++
T Consensus 26 ~~g~~t~~ei~~~l~~~y~~~~~ 48 (68)
T PF05402_consen 26 LDGPRTVEEIVDALAEEYDVDPE 48 (68)
T ss_dssp --SSS-HHHHHHHHHHHTT--HH
T ss_pred ccCCCCHHHHHHHHHHHcCCCHH
Confidence 34568999999999999998765
No 289
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=30.68 E-value=86 Score=20.92 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=23.9
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCC
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 78 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~ 78 (120)
.+.|.+. .||+.+.+++++.+++.+.-... ..+|.
T Consensus 6 ~~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~-gltgt 40 (159)
T PRK09908 6 TITIECT-INGMPFQLHAAPGTPLSELLREQ-GLLSV 40 (159)
T ss_pred ceeEEEE-ECCEEEEEecCCCCcHHHHHHHc-CCCCC
Confidence 3445555 67888899999999988766653 33443
No 290
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=30.51 E-value=83 Score=17.69 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=28.7
Q ss_pred hhcCCCCCceEEEeCCEEcCCCCccccC--CCCCCCEEEEEEE
Q 038333 74 DKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 114 (120)
Q Consensus 74 ~~~~~~~~~~~L~~~g~~L~d~~~L~~~--~i~~g~~i~v~~~ 114 (120)
...|+.+.+.-+..+|+.+.+...+..+ ..+.|+++.+.+.
T Consensus 28 ~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~ 70 (82)
T PF13180_consen 28 AKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVL 70 (82)
T ss_dssp HHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEE
T ss_pred HHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEE
Confidence 4667888888888999988655544433 4577888877665
No 291
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=30.35 E-value=1.2e+02 Score=17.61 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=34.5
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
|.+..++.+...+++-|..|+.+--.+.-+..|+.++-...+
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~ 43 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVF 43 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEE
Confidence 456667877788999999999999999999999987665554
No 292
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=30.35 E-value=77 Score=19.40 Aligned_cols=55 Identities=4% Similarity=-0.014 Sum_probs=31.9
Q ss_pred EEEeecCCCEEEEEEeCCCCEEEEEEc--CCCC-------HHHHHHHHHhhcCCCCCceEEEeC
Q 038333 34 HLVLRLRGGMQIFVKTLTGKTITLEVE--SSDT-------IDNVKAKIQDKEGIPPDQQRLIFA 88 (120)
Q Consensus 34 ~~~~~~~~~m~i~v~~~~g~~~~i~v~--~~~t-------V~~LK~~i~~~~~~~~~~~~L~~~ 88 (120)
++++...+...+.....+.....+++. ...+ ..+|-+.+++..|+|++++-+.+.
T Consensus 38 ~~~v~~~~~~~m~f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~ 101 (116)
T PTZ00397 38 YIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIEFK 101 (116)
T ss_pred HEEEEEeCCceEEECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 444444444444444433333333333 2223 556777788889999999988764
No 293
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=30.01 E-value=81 Score=19.58 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=36.3
Q ss_pred cCCeEEEEeecCCCEEEEEEeCCCCEEEEEEc------CC---CCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 29 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVE------SS---DTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 29 ~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~------~~---~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
..+..++++.......+.....+...-.+++. +. .--+.|-+.++++.|+|++++-+.|..
T Consensus 33 gKPe~yvmV~~~~~~~m~fgGs~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 33 GKPEDFVMTAFSDSTPMSFQGSTAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred CCCHHHEEEEEeCCceEEEcCCCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEc
Confidence 44445555555555555555443322223322 22 124677888899999999999988764
No 294
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=30.01 E-value=1.2e+02 Score=17.62 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=30.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.|++... +.-.+-=....++.+|++.++..++++...+.++
T Consensus 30 ~~i~I~I~ta--rPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 30 TRTEIIIRAT--RTQNVLGEKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred CeEEEEEEeC--CCceEECCCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 4466666643 2223333456789999999999999987777663
No 295
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=29.92 E-value=2.2e+02 Score=20.62 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCC--CCccccCCCCCCCEEEE
Q 038333 61 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHL 111 (120)
Q Consensus 61 ~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d--~~~L~~~~i~~g~~i~v 111 (120)
-++|+..|...++.-+...+..+.|.|.|-.... +-+|....+.||-.++.
T Consensus 139 fdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltqL~vGDgLRl~~ 191 (305)
T PF06622_consen 139 FDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQLRVGDGLRLYH 191 (305)
T ss_pred EeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeEeecCCcEEEEe
Confidence 4789999999999999999999999999876652 34455544444444443
No 296
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=29.30 E-value=1e+02 Score=18.04 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 61 SSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 61 ~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
++-+-.++|++|++.++++++.+-+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~ 36 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVF 36 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEe
Confidence 46688999999999999988776553
No 297
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=29.04 E-value=92 Score=16.03 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=32.6
Q ss_pred eCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 49 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 49 ~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
.++|+ .++++...|+.++-+.+.. +++.+......+|+..+-+ .-+.+|++|.++
T Consensus 5 ~~~g~--~~~~~~~~t~~~~~~~~~~--~~~~~~va~~vng~~vdl~-----~~l~~~~~ve~v 59 (60)
T cd01668 5 TPKGE--IIELPAGATVLDFAYAIHT--EIGNRCVGAKVNGKLVPLS-----TVLKDGDIVEII 59 (60)
T ss_pred CCCCC--EEEcCCCCCHHHHHHHHCh--HhhhheEEEEECCEECCCC-----CCCCCCCEEEEE
Confidence 35565 4557788899997765543 2233334445788776433 335668877654
No 298
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=28.62 E-value=90 Score=17.99 Aligned_cols=44 Identities=27% Similarity=0.541 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC---CceEEE-eCCEEcC
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI-FAGKQLE 93 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~---~~~~L~-~~g~~L~ 93 (120)
-+|+...+.+|.-+++.=+-++.+.+.+.++ ...++. ++|..+.
T Consensus 7 Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~ 54 (91)
T cd05484 7 VNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLS 54 (91)
T ss_pred ECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEee
Confidence 4577889999998888888888888888543 334454 6776654
No 299
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=28.09 E-value=98 Score=17.69 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=27.8
Q ss_pred ccccccccCCeEEEEeecCCCE--EEEEEeCCCCEE-----EEEEcCCCCHHHHHHHHHhhcCC
Q 038333 22 LADYNIQKESTLHLVLRLRGGM--QIFVKTLTGKTI-----TLEVESSDTIDNVKAKIQDKEGI 78 (120)
Q Consensus 22 l~~y~i~~~s~i~~~~~~~~~m--~i~v~~~~g~~~-----~i~v~~~~tV~~LK~~i~~~~~~ 78 (120)
-.+|.+.+++.+.+.+.....+ .++|. .+|... .+.+ ...|+.++++.|..++.-
T Consensus 8 ~~~y~l~pGD~l~i~v~~~~~l~~~~~V~-~dG~I~lP~iG~v~v-~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 8 PPEYRLGPGDVLRISVFGWPELSGEYTVD-PDGTISLPLIGPVKV-AGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp T------TT-EEEEEETT-HHHCCSEE---TTSEEEETTTEEEE--TT--HHHHHHHHHHHHTT
T ss_pred CCCCEECCCCEEEEEEecCCCcccceEEC-CCCcEeecccceEEE-CCCCHHHHHHHHHHHHHH
Confidence 3578888999999888665433 44444 555421 1233 367999999999988763
No 300
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=27.63 E-value=42 Score=23.22 Aligned_cols=16 Identities=38% Similarity=0.902 Sum_probs=10.4
Q ss_pred CCCEEEEEEEcCCCCC
Q 038333 105 KESTLHLVLRLRGGEF 120 (120)
Q Consensus 105 ~g~~i~v~~~~~gG~~ 120 (120)
..-.|++++|+++|.|
T Consensus 49 ~~ipv~vMIRpr~gdF 64 (201)
T PF03932_consen 49 VDIPVHVMIRPRGGDF 64 (201)
T ss_dssp TTSEEEEE--SSSS-S
T ss_pred cCCceEEEECCCCCCc
Confidence 3457999999999987
No 301
>PRK13605 endoribonuclease SymE; Provisional
Probab=27.13 E-value=87 Score=19.66 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=23.7
Q ss_pred EEEEeCCCCEEEEEEcCC-CCHHHHHHHHHhhcCCCCCce
Q 038333 45 IFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQ 83 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~-~tV~~LK~~i~~~~~~~~~~~ 83 (120)
|.|+-..|. +.|...+. ....+|.+.+.+.+.+.+..|
T Consensus 58 V~V~V~~G~-LVIt~~~~~~~~~el~~~l~~v~~~s~~kq 96 (113)
T PRK13605 58 VDVRVMEGC-IVLTAQPPAAEESELMQSLRQVCKLSARKQ 96 (113)
T ss_pred EEEEEeCCE-EEEEeCCCCcccHHHHHHHHHHHHhhhHHH
Confidence 334334554 44444443 358899999988887776655
No 302
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=27.11 E-value=2.4e+02 Score=20.20 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=39.5
Q ss_pred EEEEEEeCCCCEE--EEEEcCCCCHHHHHHHHHhh--------cCCCCCceEEEeCCEEcCCCCcccc
Q 038333 43 MQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLEDGRTLAD 100 (120)
Q Consensus 43 m~i~v~~~~g~~~--~i~v~~~~tV~~LK~~i~~~--------~~~~~~~~~L~~~g~~L~d~~~L~~ 100 (120)
|.|....++|+.+ .+.|...+||..+-.+..+. ..+.++++-++-.+-++....++.+
T Consensus 99 I~I~fsywDGs~hrr~v~vKKGdtI~~FL~~~r~~l~~~f~el~~vsvd~LM~VkedlIiPHhy~FY~ 166 (239)
T PF04921_consen 99 IEIPFSYWDGSGHRRTVRVKKGDTIWQFLEKCRKQLAKEFRELRRVSVDDLMYVKEDLIIPHHYTFYD 166 (239)
T ss_pred eEEEEEEECCCCCcceEEEcCCCCHHHHHHHHHHHHHHHhHHHHhcCHhheeeeccceeccCCceeee
Confidence 8888888888644 58899999999887776555 3366666655555555544444433
No 303
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=26.72 E-value=75 Score=19.77 Aligned_cols=26 Identities=27% Similarity=0.624 Sum_probs=13.7
Q ss_pred HHHHHHHHhhcCCCCCceEEEeCCEEc
Q 038333 66 DNVKAKIQDKEGIPPDQQRLIFAGKQL 92 (120)
Q Consensus 66 ~~LK~~i~~~~~~~~~~~~L~~~g~~L 92 (120)
...++.+.+ +|+++++..++++|-.+
T Consensus 148 ~~~~~~l~~-~~~~~~ki~vI~ngid~ 173 (177)
T PF13439_consen 148 ESTKDELIK-FGIPPEKIHVIYNGIDT 173 (177)
T ss_dssp HHHHHHHHH-HT--SS-EEE----B-C
T ss_pred HHHHHHHHH-hCCcccCCEEEECCccH
Confidence 456777777 88999999999998654
No 304
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=26.52 E-value=1.5e+02 Score=19.82 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.4
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHH
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVK 69 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK 69 (120)
...++|+...++|+...++....+||.++-
T Consensus 41 ~e~i~Itfv~~dG~~~~i~g~vGdtlLd~a 70 (159)
T KOG3309|consen 41 VEDIKITFVDPDGEEIKIKGKVGDTLLDAA 70 (159)
T ss_pred CceEEEEEECCCCCEEEeeeecchHHHHHH
Confidence 345889989999999999999999997764
No 305
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=26.16 E-value=36 Score=25.59 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=46.2
Q ss_pred EEEEEEcCCCCHH---HHHHHHHhhcCCCCCce--EEEeCCEEcCCC-CccccCCCCCCCEEEEE
Q 038333 54 TITLEVESSDTID---NVKAKIQDKEGIPPDQQ--RLIFAGKQLEDG-RTLADYNIQKESTLHLV 112 (120)
Q Consensus 54 ~~~i~v~~~~tV~---~LK~~i~~~~~~~~~~~--~L~~~g~~L~d~-~~L~~~~i~~g~~i~v~ 112 (120)
.+.+.+.+..+.. +++.......++.-.++ +++|.+.++.|. -.|...+.++-+.+.++
T Consensus 72 ~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~ 136 (344)
T KOG4361|consen 72 GHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKINVV 136 (344)
T ss_pred ccccccccccccccchhhhcccccccceeecccccccceecccccccccccccccCcccccceec
Confidence 4566777776666 89988888999877776 899999998765 57888888888877664
No 306
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=25.97 E-value=75 Score=18.33 Aligned_cols=58 Identities=9% Similarity=0.144 Sum_probs=31.7
Q ss_pred eEEEEeecCCCEEEEEEeCCCCEEEEEEcCC----CCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 32 TLHLVLRLRGGMQIFVKTLTGKTITLEVESS----DTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 32 ~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~----~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
.+.+.++|.++-.-.....+...+.+.+... .==.+|...+++.+++|..++.|+.+.
T Consensus 5 ~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~G~ 66 (77)
T PF02594_consen 5 ILSVRVKPGAKRNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVSGH 66 (77)
T ss_dssp EEEEECEBSSSS-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC-C
T ss_pred EEEEEEEeCCCccccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEecC
Confidence 3455555554433322222212456655431 235789999999999999999997643
No 307
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=25.91 E-value=44 Score=22.31 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
+....++|..++..+|++++.+.+.
T Consensus 163 ~~~~~~i~~~la~~~~i~~~~I~V~ 187 (188)
T PF09581_consen 163 SEEEEEIKQYLADFYGISPEQIKVY 187 (188)
T ss_pred hHHHHHHHHHHHHHhCCCHHHeEEe
Confidence 3468999999999999999888764
No 308
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=25.57 E-value=26 Score=21.93 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=23.4
Q ss_pred CceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 81 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 81 ~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
..-.|-|.|..--|...|...||.++..|.+.---.|
T Consensus 15 T~a~L~YeGSitID~~Ll~aagi~~~E~V~I~Nv~NG 51 (111)
T cd06919 15 TEADLNYEGSITIDEDLLEAAGILPYEKVLVVNVNNG 51 (111)
T ss_pred eccccccceeEEECHHHHHhcCCCCCCEEEEEECCCC
Confidence 3344667777666666777777777777766544333
No 309
>PRK08453 fliD flagellar capping protein; Validated
Probab=25.54 E-value=82 Score=26.03 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.6
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHh
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQD 74 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~ 74 (120)
.+|+.+.|+|+...|+.+|+.+|-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd 159 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITD 159 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcC
Confidence 3589999999999999999999984
No 310
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=24.03 E-value=95 Score=19.63 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=20.1
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCc
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQ 82 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~ 82 (120)
.++++.+.|+.+|-..+++++|+.+..
T Consensus 36 r~~v~~~~Tl~~li~~~~~~~~lev~m 62 (125)
T PF09358_consen 36 RIEVNGDMTLQELIDYFKEKYGLEVTM 62 (125)
T ss_dssp EEEEES--BHHHHHHHHHHTTS-EEEE
T ss_pred EEEEcCCCCHHHHHHHHHHHhCceEEE
Confidence 467777899999999999999986643
No 311
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=23.70 E-value=1.3e+02 Score=19.97 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=31.5
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCC-------CCceEEEeCCEEcCCCCccc
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGKQLEDGRTLA 99 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~-------~~~~~L~~~g~~L~d~~~L~ 99 (120)
|++. .||+.+.++++|.+++.++-..--..+|.- -..-.+..+|+......++.
T Consensus 4 i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a 64 (156)
T COG2080 4 ITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLA 64 (156)
T ss_pred EEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHH
Confidence 3443 578899999999998776554332222321 12335667777665444333
No 312
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=23.59 E-value=1.2e+02 Score=19.43 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.0
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhh
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDK 75 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~ 75 (120)
+|+.+.++|.....+.|+++.|+-+
T Consensus 108 ~GkWl~~~V~~~~~l~Di~~Li~iK 132 (133)
T PF12663_consen 108 DGKWLMIEVRSEEDLEDIKKLIAIK 132 (133)
T ss_pred CCcEEEEEeCChhhHHHHHHHHhhc
Confidence 3788899999999999999988753
No 313
>PF14420 Clr5: Clr5 domain
Probab=23.33 E-value=1e+02 Score=16.30 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=19.5
Q ss_pred EcCCCCHHHHHHHHHhhcCCCCC
Q 038333 59 VESSDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 59 v~~~~tV~~LK~~i~~~~~~~~~ 81 (120)
+..+.|+.++.+.+++..|+.+.
T Consensus 17 ~~e~~tl~~v~~~M~~~~~F~at 39 (54)
T PF14420_consen 17 IDENKTLEEVMEIMKEEHGFKAT 39 (54)
T ss_pred HhCCCcHHHHHHHHHHHhCCCcC
Confidence 45678999999999999998765
No 314
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=23.24 E-value=33 Score=21.96 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=25.3
Q ss_pred CCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 80 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 80 ~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
+..-.|-|.|..--|...|...||-++..|.+.---.|-+
T Consensus 15 VT~a~L~Y~GSItID~~Lm~aagi~p~E~V~V~Nv~NG~R 54 (126)
T TIGR00223 15 VTHANLNYEGSITIDEDLLDAAGILENEKVDIVNVNNGKR 54 (126)
T ss_pred EeccccccceeEEECHHHHHhcCCCCCCEEEEEECCCCcE
Confidence 3344566777766677777777777777776654443333
No 315
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=23.14 E-value=2.5e+02 Score=22.31 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=45.3
Q ss_pred ccccccccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccC
Q 038333 22 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 22 l~~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~ 101 (120)
+.-|.+.+++..++.-.|--+ +++|+..+|+++.|...... .. ..=-|.+..+|+.++... |..-
T Consensus 422 lG~YPv~pg~~~y~igsP~F~-~~~i~l~~g~~~~I~a~n~s-----------~~--n~YIqsv~lNGk~~~~~~-i~~~ 486 (502)
T PF07971_consen 422 LGFYPVNPGSPEYVIGSPLFD-KVTIHLGNGKTFTIEAKNNS-----------AE--NIYIQSVTLNGKPLTRPW-ITHD 486 (502)
T ss_dssp HTEE-SSTTSSEEEE---SSS-EEEEE-CCC-EEEEE-TT-B-----------TT--B-EEEEEEETTEEE-SSE-EEHH
T ss_pred cCCCCCCCCCceEEEcCCccC-eEEEEcCCCCEEEEEecCCC-----------CC--CceEeEEEECCEECcCCE-EeHH
Confidence 456888888888877766544 56666678899998876433 00 112346779999997553 6666
Q ss_pred CCCCCCEEEEEE
Q 038333 102 NIQKESTLHLVL 113 (120)
Q Consensus 102 ~i~~g~~i~v~~ 113 (120)
.|..|.++.+..
T Consensus 487 ~i~~GG~L~f~m 498 (502)
T PF07971_consen 487 DIMNGGTLEFEM 498 (502)
T ss_dssp HHHC-EEEEEEE
T ss_pred HHhCCCEEEEEe
Confidence 688888887754
No 316
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=23.12 E-value=71 Score=19.47 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=8.3
Q ss_pred HHHHHHhhcCCCCCceEEEeCC
Q 038333 68 VKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 68 LK~~i~~~~~~~~~~~~L~~~g 89 (120)
.++.+.+ .|++++++..+++|
T Consensus 140 ~~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 140 MRRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHHH-H---GGGEEE----
T ss_pred HHHHHHH-hCCCCCcEEEeCcC
Confidence 3444455 66777777777665
No 317
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=23.11 E-value=63 Score=18.14 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.4
Q ss_pred CCccccCCCCCCCEEEEEEEcCCC
Q 038333 95 GRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 95 ~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..++.+|.+.+|+-|-+++++..|
T Consensus 29 ~g~I~~fKmtDG~giG~vv~~~ng 52 (64)
T PF11061_consen 29 IGTIKGFKMTDGSGIGVVVEFSNG 52 (64)
T ss_pred cEEEEEEEEecCCcEEEEEEecCC
Confidence 467888999999999999988776
No 318
>PF13592 HTH_33: Winged helix-turn helix
Probab=22.98 E-value=98 Score=16.59 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHhhcCCCCC
Q 038333 61 SSDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 61 ~~~tV~~LK~~i~~~~~~~~~ 81 (120)
..+|+.++...|++.+|+..+
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys 23 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYS 23 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEc
Confidence 357999999999999998654
No 319
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.95 E-value=1e+02 Score=14.52 Aligned_cols=18 Identities=11% Similarity=0.403 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHhhcCCCC
Q 038333 62 SDTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~ 80 (120)
..|+.+||+.+.+ .|+|.
T Consensus 3 ~l~~~~Lk~~l~~-~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKK-RGLST 20 (35)
T ss_pred cCcHHHHHHHHHH-cCCCC
Confidence 5689999966654 46664
No 320
>PF12143 PPO1_KFDV: Protein of unknown function (DUF_B2219); InterPro: IPR022740 This domain represents the C terminus of polyphenol oxidases. This region is primarily found in eukaryotes, although a few bacterial members also exist. It is typically between 138 and 152 amino acids in length and the family is found in association with PF00264 from PFAM and PF12142 from PFAM. Many members are plant or plastid polyphenol oxidases, and there is a highly conserved KFDV sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process
Probab=22.94 E-value=84 Score=20.19 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=21.4
Q ss_pred CCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 94 DGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 94 d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
=...|.+.|..+.++|.|.+-+++|+
T Consensus 93 itdlLedLga~~d~sIvVTLVPr~g~ 118 (130)
T PF12143_consen 93 ITDLLEDLGAEDDDSIVVTLVPRGGG 118 (130)
T ss_pred hhHHHHHhCCCCCCEEEEEEEEccCC
Confidence 34568999999999999988888773
No 321
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=22.82 E-value=1e+02 Score=17.50 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=16.2
Q ss_pred CccccCCCCCCCEEEEEEEcC
Q 038333 96 RTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v~~~~~ 116 (120)
..|.+.|+.+|+.|.+.-+-+
T Consensus 24 ~rL~~mGl~pG~~V~v~~~aP 44 (74)
T PRK09555 24 QKLLSLGMLPGSSFNVVRVAP 44 (74)
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 457888888888888876655
No 322
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=22.79 E-value=1.8e+02 Score=23.51 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=40.5
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
...+.|.|...+|-.+.+.--.+.-+..|+.-+.+.+++.+..-.|..+|
T Consensus 57 ~r~~~LrV~tk~g~~~~~~GF~d~d~~~L~~ff~~~~~~~i~qkel~ikG 106 (615)
T KOG0526|consen 57 VRGYGLRVFTKDGGVYRFDGFRDDDLEKLKSFFSSNFSITIEQKELSIKG 106 (615)
T ss_pred ccccceEEEccCCceEEecCcCHHHHHHHHHHHHHhhccchhhheeeecc
Confidence 35578888888888888887778889999999999999887766665544
No 323
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=22.77 E-value=2.4e+02 Score=23.55 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=43.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+|.|-++.|+ .+.++...|+-|+=-.|....|-....- .-||+...- +|.+++||+|.+...
T Consensus 387 ~v~VfTP~G~--v~~LP~GaT~lDFAY~iHt~iG~~c~gA--kVNg~~vpL-----~~~L~~Gd~VeIiT~ 448 (702)
T PRK11092 387 EIYVFTPEGR--IVELPAGATPVDFAYAVHTDIGHACVGA--RVDRQPYPL-----SQPLTSGQTVEIITA 448 (702)
T ss_pred eEEEECCCCC--EEeCCCCCchhhhhHhhCchhhceeEEE--EECCEECCC-----CccCCCCCEEEEEeC
Confidence 4777788885 6778889999999998888877542111 235555433 345677999998753
No 324
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=22.61 E-value=1.1e+02 Score=22.39 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHhhcCCCCCceEEEeCCE
Q 038333 61 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 90 (120)
Q Consensus 61 ~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~ 90 (120)
|+.. .+|++.|++.+|++..++-++-+|.
T Consensus 52 p~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs 80 (339)
T PRK06959 52 PEDD-DGLAACAARYYGAPDAAHVLPVAGS 80 (339)
T ss_pred CCch-HHHHHHHHHHhCCCCcccEEECcCH
Confidence 4455 9999999999999753444555553
No 325
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=22.59 E-value=24 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=23.4
Q ss_pred ceEEEEccEEcCCCCCccccccccCCeEEEE
Q 038333 6 QQRLIFAGKQLEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 6 ~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~ 36 (120)
+.++-|.|.+++..|....|++..+|.+...
T Consensus 7 ~~~i~YDGsqi~slWAy~~fgi~gdSIV~Fr 37 (183)
T PF04017_consen 7 DERIDYDGSQISSLWAYRNFGIQGDSIVVFR 37 (183)
T ss_dssp SSE--BSSGGGSTTHHHHHH---SSEEEEEE
T ss_pred CCCcCcChhhhhHHHHHHhcCCCCCeEEEEE
Confidence 5677899999999999999999999999865
No 326
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=22.42 E-value=1.3e+02 Score=17.49 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=14.9
Q ss_pred CCCCceEEEeCCEEcCCCC
Q 038333 78 IPPDQQRLIFAGKQLEDGR 96 (120)
Q Consensus 78 ~~~~~~~L~~~g~~L~d~~ 96 (120)
-|+..++++.+|++|.+..
T Consensus 12 kP~A~I~W~k~~~~l~~~~ 30 (82)
T cd05883 12 KPAATIRWFKGNKELTGKS 30 (82)
T ss_pred CCCCEEEEEECCEECcCcc
Confidence 4778888988998887653
No 327
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=22.15 E-value=83 Score=17.84 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=15.9
Q ss_pred CCCccccCCCCCCCEEEEEEE
Q 038333 94 DGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 94 d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+...+..+|+..|+.|.+...
T Consensus 15 Pk~i~~~lgl~~Gd~v~v~~~ 35 (74)
T TIGR02609 15 PKEVLESLGLKEGDTLYVDEE 35 (74)
T ss_pred CHHHHHHcCcCCCCEEEEEEE
Confidence 445678899999999977544
No 328
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=22.02 E-value=1.2e+02 Score=20.17 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=19.4
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 77 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ 77 (120)
=.++++...++-+.+.++... +.||| .|.+..|
T Consensus 46 KnLfLkdkK~q~~lv~~~e~~-~vDLk-~ih~~IG 78 (164)
T COG3760 46 KNLFLKDKKDQFFLVTVDEDA-VVDLK-SIHETIG 78 (164)
T ss_pred ceeEeecCCCCEEEEEecccc-eecHH-HHHHHhc
Confidence 456777777766677776554 45666 3333333
No 329
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=21.90 E-value=89 Score=17.50 Aligned_cols=19 Identities=0% Similarity=0.099 Sum_probs=13.0
Q ss_pred CCCCCCCEEEEEEEcCCCC
Q 038333 101 YNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 101 ~~i~~g~~i~v~~~~~gG~ 119 (120)
-+++.|+.|.+.+...+++
T Consensus 41 ~~l~~Gd~V~F~~~~~~~~ 59 (70)
T PF11604_consen 41 AGLKPGDKVRFTFERTDDG 59 (70)
T ss_dssp SS-STT-EEEEEEEEETTC
T ss_pred hcCCCCCEEEEEEEECCCC
Confidence 3578899999988876654
No 330
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=21.89 E-value=98 Score=16.40 Aligned_cols=20 Identities=0% Similarity=0.149 Sum_probs=12.0
Q ss_pred CccccCCCCCCCEEEEEEEc
Q 038333 96 RTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v~~~~ 115 (120)
....+.+++.|+.+++.++.
T Consensus 40 ~~~~~L~L~~G~~V~~~ik~ 59 (64)
T PF03459_consen 40 ESAEELGLKPGDEVYASIKA 59 (64)
T ss_dssp HHHHHCT-STT-EEEEEE-G
T ss_pred HHHHHcCCCCCCEEEEEEeh
Confidence 44666777788888877764
No 331
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=21.86 E-value=2.1e+02 Score=17.73 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHH
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVK 69 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK 69 (120)
++|++..++|+...+++.+..|+.+.-
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~ 27 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAA 27 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 356666688888999999888876553
No 332
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=21.84 E-value=76 Score=23.53 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCCceEEEEccEEcCCCCCccccc---cccCCeEEEEee
Q 038333 3 PPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLR 38 (120)
Q Consensus 3 ~~~~q~l~~~g~~L~d~~~l~~y~---i~~~s~i~~~~~ 38 (120)
|.+-..|+|+|++|+.+-||+--. -+++.-+-|.++
T Consensus 289 p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR 327 (331)
T PF11816_consen 289 PEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYR 327 (331)
T ss_pred CCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEE
Confidence 567789999999999999987654 245555544443
No 333
>COG2002 AbrB Regulators of stationary/sporulation gene expression [Transcription]
Probab=21.67 E-value=72 Score=18.74 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=18.2
Q ss_pred CCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 88 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 88 ~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+|+..-+...-..+||+.||.+.+.+.-.+|
T Consensus 13 ~GqIvIPkeiR~~lgi~~Gd~lei~~~~~~~ 43 (89)
T COG2002 13 KGQIVIPKEIREALGIKEGDVLEIIVDGDGG 43 (89)
T ss_pred CceEEecHHHHHHhCCCCCCEEEEEEeCCCC
Confidence 4444444445566677777777666665443
No 334
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=21.59 E-value=35 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=17.6
Q ss_pred EEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 85 LIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 85 L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
|-|.|..+........+||+..+.|..
T Consensus 13 ldYdGSqI~~~wA~~~fgI~gdSiVvf 39 (189)
T COG2029 13 LDYDGSQIRSAWAYRNFGIKGDSIVVF 39 (189)
T ss_pred ccCchhhhhhhHhHhhcCcCCceEEEE
Confidence 557777777677777777775444433
No 335
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=21.57 E-value=48 Score=17.48 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCc
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQ 82 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~ 82 (120)
+.|...+++++++++|++...
T Consensus 20 ~vT~k~vr~~Le~~~~~dL~~ 40 (54)
T PF08766_consen 20 TVTKKQVREQLEERFGVDLSS 40 (54)
T ss_dssp G--HHHHHHHHHHH-SS--SH
T ss_pred HhhHHHHHHHHHHHHCCCcHH
Confidence 458899999999999987653
No 336
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=21.57 E-value=3.1e+02 Score=21.45 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=40.7
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCc--e-EEEeCC------EEcCCCCccccCCCCCCCEEEEEEE
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--Q-RLIFAG------KQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~--~-~L~~~g------~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+.++..+.++...|++.|+-..-+++.+.+.. + -|+... .+|.|. .| ..|++|+.+.+.+.
T Consensus 5 ~~ktKK~~l~~~lt~~~LrLlFvekFayspg~~~fPeIYIqDP~sgV~yELEd~-~l--~DvkdgsvL~Ln~e 74 (426)
T smart00806 5 GNKTKKVVVSSPLTFNALRLLFIEKFAYSPGGDDFPDIYIQDPVSGVSYELEEL-SL--HDIKDGSVLVLNVE 74 (426)
T ss_pred CCcceeEecCCCCCHHHHHHHHHHHhccCCCCCCCcceecccCCCCceeehhhc-cc--cccccCeeEEEeCc
Confidence 34666777888899999999999999887642 2 233221 133322 22 24899999988765
No 337
>PRK11347 antitoxin ChpS; Provisional
Probab=21.25 E-value=89 Score=18.32 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=16.8
Q ss_pred CCCccccCCCCCCCEEEEEEE
Q 038333 94 DGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 94 d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+...+..+++..|+++.+.+.
T Consensus 17 Pk~il~~l~l~~G~~v~i~v~ 37 (83)
T PRK11347 17 PNIVMKELNLQPGQSVEAQVS 37 (83)
T ss_pred CHHHHHHcCCCCCCEEEEEEE
Confidence 455688899999999888765
No 338
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=21.24 E-value=1.6e+02 Score=15.96 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=8.8
Q ss_pred CCCCCceEEEeCCEEcC
Q 038333 77 GIPPDQQRLIFAGKQLE 93 (120)
Q Consensus 77 ~~~~~~~~L~~~g~~L~ 93 (120)
|.|+-.+.+..+|+.+.
T Consensus 9 g~P~p~v~W~k~~~~l~ 25 (76)
T cd05736 9 GIPLPRLTWLKNGMDIT 25 (76)
T ss_pred ecCCCEEEEEECCEECC
Confidence 44444555555555554
No 339
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=21.17 E-value=2.2e+02 Score=17.64 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=31.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~ 81 (120)
..+.+.+.++ .+|+...+=+|..+|..-+-..++++.|+.+.
T Consensus 8 ~~g~~~v~~~-InG~~~~flVDTGAs~t~is~~~A~~Lgl~~~ 49 (121)
T TIGR02281 8 GDGHFYATGR-VNGRNVRFLVDTGATSVALNEEDAQRLGLDLN 49 (121)
T ss_pred CCCeEEEEEE-ECCEEEEEEEECCCCcEEcCHHHHHHcCCCcc
Confidence 3455666666 36778888899888887888889999998763
No 340
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=21.16 E-value=1.2e+02 Score=15.29 Aligned_cols=18 Identities=0% Similarity=0.126 Sum_probs=13.6
Q ss_pred ccccCCCCCCCEEEEEEE
Q 038333 97 TLADYNIQKESTLHLVLR 114 (120)
Q Consensus 97 ~L~~~~i~~g~~i~v~~~ 114 (120)
....++++.|+.|.+...
T Consensus 15 ~~~~l~l~~Gd~v~i~~~ 32 (47)
T PF04014_consen 15 IREKLGLKPGDEVEIEVE 32 (47)
T ss_dssp HHHHTTSSTTTEEEEEEE
T ss_pred HHHHcCCCCCCEEEEEEe
Confidence 355678899999887765
No 341
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=21.02 E-value=75 Score=22.22 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=12.3
Q ss_pred CEEEEEEEcCCCCC
Q 038333 107 STLHLVLRLRGGEF 120 (120)
Q Consensus 107 ~~i~v~~~~~gG~~ 120 (120)
--+++++|.++|.|
T Consensus 60 iP~ycMiRpR~GDF 73 (255)
T KOG4013|consen 60 IPLYCMIRPRAGDF 73 (255)
T ss_pred cceEEEEecCCCCc
Confidence 56899999999987
No 342
>PRK12765 flagellar capping protein; Provisional
Probab=20.76 E-value=2.5e+02 Score=22.85 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=26.8
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhh
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 75 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~ 75 (120)
+++.+.+. .+|+.+.|.++..+|+.+|..+|-..
T Consensus 131 gt~tlti~-~~g~~~tI~i~~~~TL~dl~~aIN~a 164 (595)
T PRK12765 131 GETDLTIF-SNGKEYTITVDKSTTYRDLADKINEA 164 (595)
T ss_pred CceEEEEE-eCCEEEEEEECCCCCHHHHHHHHhcC
Confidence 44556664 46778999999999999999999764
No 343
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=20.71 E-value=2.6e+02 Score=18.36 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=25.1
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcC-CCCCceEEEeCCE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGK 90 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~-~~~~~~~L~~~g~ 90 (120)
..+....+-|+.++|+.+.+... ...++.-+.|+|.
T Consensus 64 ~~~~~~~dpt~e~~~~~~~~~R~~a~~~RvLFHYnGh 100 (154)
T PF14538_consen 64 ARYKQSLDPTVEDLKRLCQSLRRNAKDERVLFHYNGH 100 (154)
T ss_pred CcEEEecCCCHHHHHHHHHHHHhhCCCceEEEEECCC
Confidence 45666678899999996666544 4446666668885
No 344
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.70 E-value=1.3e+02 Score=21.24 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=28.4
Q ss_pred CCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 4 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 4 ~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
+.-|+++|+|..+-+...|..+.+..+..-.+-+
T Consensus 184 ~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 184 PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 4568999999999999999999999987655543
No 345
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=20.35 E-value=2e+02 Score=16.80 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~ 80 (120)
..|+...+++...-...||..++...+|-+.
T Consensus 7 ~~gEKRIi~f~RPvkf~dl~~kv~~afGq~m 37 (79)
T cd06405 7 HNGEKRIIQFPRPVKFKDLQQKVTTAFGQPM 37 (79)
T ss_pred ecCceEEEecCCCccHHHHHHHHHHHhCCee
Confidence 3578889999999999999999999999764
No 346
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=4e+02 Score=22.35 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=32.6
Q ss_pred EEEEEeCCCC--EEEEEEcCCCCHHHHHHHHHhhcCCCC----CceEEEeCC
Q 038333 44 QIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPP----DQQRLIFAG 89 (120)
Q Consensus 44 ~i~v~~~~g~--~~~i~v~~~~tV~~LK~~i~~~~~~~~----~~~~L~~~g 89 (120)
+|.+-..+|. ...++++...|+..||..+-+..|... ..+.+++++
T Consensus 457 tiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~ 508 (823)
T COG5560 457 TIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGG 508 (823)
T ss_pred cEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEecc
Confidence 3455445554 566788889999999999999988655 344555555
No 347
>PF14268 YoaP: YoaP-like
Probab=20.28 E-value=1e+02 Score=15.91 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.5
Q ss_pred hhcCCCCCceEEEeCCEEcC
Q 038333 74 DKEGIPPDQQRLIFAGKQLE 93 (120)
Q Consensus 74 ~~~~~~~~~~~L~~~g~~L~ 93 (120)
+....|.....|+|+|+.+.
T Consensus 14 q~~P~pft~yalFYnGkfiT 33 (44)
T PF14268_consen 14 QNAPCPFTTYALFYNGKFIT 33 (44)
T ss_pred hcCCCceeEEEEEECCEEEE
Confidence 34567888999999998664
No 348
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=20.26 E-value=2.4e+02 Score=19.95 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.0
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEG 77 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~ 77 (120)
+.+.+.+++..||.++-..|.+...
T Consensus 24 ~~y~v~~~~~~tvLdaL~~Ik~~~D 48 (239)
T PRK13552 24 VTYQLEETPGMTLFIALNRIREEQD 48 (239)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCC
Confidence 3466777789999999999987643
No 349
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=20.16 E-value=1.9e+02 Score=16.65 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=30.2
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
|.|.|-..+ ...++.++.+.|-.++.+.+.....-...-+.|.
T Consensus 1 MeIkIGi~~-~~REl~ies~~s~dev~~~v~~Al~~~~~~l~Lt 43 (74)
T PF11305_consen 1 MEIKIGIQN-VARELVIESDQSADEVEAAVTDALADGSGVLTLT 43 (74)
T ss_pred CeEEEeeec-CCceEEEecCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 455554433 3567888889999999999999876554445554
No 350
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=20.01 E-value=1.4e+02 Score=18.48 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=31.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCC-----------ceEEEeCCEE-cCCCCccccCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAGKQ-LEDGRTLADYN 102 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~-----------~~~L~~~g~~-L~d~~~L~~~~ 102 (120)
.+.+++.+..||.++-..|.+...-+.. .--+..||+. |.-...+.++.
T Consensus 20 ~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~~ 80 (110)
T PF13085_consen 20 EYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDLI 80 (110)
T ss_dssp EEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGCT
T ss_pred EEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhcc
Confidence 5678888899999999999888642211 2235567775 55455555553
Done!