Query 038333
Match_columns 120
No_of_seqs 143 out of 1147
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 17:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.7E-33 5.7E-38 185.4 15.3 119 1-119 37-158 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 2.6E-32 8.7E-37 181.9 14.6 118 1-118 55-172 (172)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 3.2E-31 1.1E-35 172.7 16.2 118 1-118 35-152 (152)
4 3phx_B Ubiquitin-like protein 99.9 2.6E-23 8.8E-28 122.0 11.0 78 40-117 2-79 (79)
5 4fbj_B NEDD8; effector-HOST ta 99.9 1.6E-23 5.5E-28 125.5 9.7 77 43-119 1-77 (88)
6 3mtn_B UBA80, ubcep1, ubiquiti 99.9 4.4E-23 1.5E-27 122.3 10.5 79 41-119 2-80 (85)
7 3n3k_B Ubiquitin; hydrolase, p 99.9 2.2E-23 7.5E-28 123.6 9.2 79 41-119 2-80 (85)
8 3dbh_I NEDD8; cell cycle, acti 99.9 3.7E-23 1.3E-27 123.4 9.8 79 40-118 10-88 (88)
9 1ndd_A NEDD8, protein (ubiquit 99.9 7.2E-23 2.5E-27 118.8 9.9 76 43-118 1-76 (76)
10 4hcn_B Polyubiquitin, ubiquiti 99.9 5.7E-23 2E-27 125.3 9.5 79 40-118 20-98 (98)
11 3a9j_A Ubiquitin; protein comp 99.9 1.1E-22 3.8E-27 118.0 10.2 76 43-118 1-76 (76)
12 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 1E-22 3.6E-27 121.4 10.0 81 39-119 4-84 (87)
13 4eew_A Large proline-rich prot 99.9 1.2E-22 4E-27 121.5 10.0 87 27-114 2-88 (88)
14 1sif_A Ubiquitin; hydrophobic 99.9 1.2E-22 4E-27 121.7 9.3 79 41-119 8-86 (88)
15 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 2.6E-22 8.8E-27 121.7 10.1 77 43-119 2-78 (96)
16 2ojr_A Ubiquitin; lanthide-bin 99.9 2.4E-22 8.1E-27 125.1 10.2 93 26-118 11-111 (111)
17 2uyz_B Small ubiquitin-related 99.9 1.8E-22 6.1E-27 118.4 8.6 77 42-118 3-79 (79)
18 3vdz_A Ubiquitin-40S ribosomal 99.9 6.5E-22 2.2E-26 123.1 11.0 78 41-118 34-111 (111)
19 2hj8_A Interferon-induced 17 k 99.9 1.9E-22 6.6E-27 120.7 8.2 79 41-119 3-81 (88)
20 1wy8_A NP95-like ring finger p 99.9 9.2E-22 3.2E-26 117.7 10.9 80 40-119 5-86 (89)
21 3v6c_B Ubiquitin; structural g 99.9 9.2E-22 3.1E-26 118.4 10.6 77 40-116 15-91 (91)
22 2kan_A Uncharacterized protein 99.9 8E-22 2.7E-26 119.4 10.0 79 40-119 13-92 (94)
23 3plu_A Ubiquitin-like modifier 99.9 1E-21 3.5E-26 117.6 10.2 75 38-112 17-91 (93)
24 1wyw_B Ubiquitin-like protein 99.9 5.9E-22 2E-26 120.6 9.2 80 39-118 18-97 (97)
25 2l7r_A Ubiquitin-like protein 99.9 6.2E-22 2.1E-26 119.7 8.1 78 39-118 16-93 (93)
26 1yx5_B Ubiquitin; proteasome, 99.9 2.4E-21 8.1E-26 118.0 10.3 77 43-119 1-77 (98)
27 4dwf_A HLA-B-associated transc 99.9 2.7E-21 9.2E-26 116.0 10.4 78 40-118 3-80 (90)
28 1we6_A Splicing factor, putati 99.9 1.8E-21 6.2E-26 121.1 8.7 81 39-119 24-108 (111)
29 2faz_A Ubiquitin-like containi 99.9 8.4E-21 2.9E-25 110.9 10.5 76 41-116 1-78 (78)
30 2dzi_A Ubiquitin-like protein 99.9 6E-21 2E-25 112.1 9.7 77 40-116 5-81 (81)
31 3q3f_A Ribonuclease/ubiquitin 99.9 6.7E-21 2.3E-25 128.2 10.6 89 31-119 94-182 (189)
32 2kk8_A Uncharacterized protein 99.8 5.5E-21 1.9E-25 113.5 8.8 76 40-115 8-84 (84)
33 1wgd_A Homocysteine-responsive 99.8 3.8E-21 1.3E-25 116.1 8.3 80 40-119 5-90 (93)
34 3l0w_B Monoubiquitinated proli 99.8 8.3E-21 2.8E-25 126.0 10.4 77 43-119 1-77 (169)
35 2kdi_A Ubiquitin, vacuolar pro 99.8 2.4E-20 8.2E-25 116.6 10.9 80 40-119 7-86 (114)
36 1yqb_A Ubiquilin 3; structural 99.8 2E-20 7E-25 114.4 9.2 79 39-118 19-97 (100)
37 1wx8_A Riken cDNA 4931431F19; 99.8 8.2E-21 2.8E-25 115.2 7.4 79 40-119 15-93 (96)
38 1we7_A SF3A1 protein; structur 99.8 2.2E-20 7.5E-25 116.9 9.4 80 40-119 23-112 (115)
39 2wyq_A HHR23A, UV excision rep 99.8 6.9E-20 2.3E-24 108.6 10.9 77 40-116 3-82 (85)
40 1uel_A HHR23B, UV excision rep 99.8 5.5E-20 1.9E-24 111.4 10.5 75 43-117 1-78 (95)
41 3b1l_X E3 ubiquitin-protein li 99.7 2.7E-22 9.3E-27 116.7 0.0 75 43-117 1-75 (76)
42 1j8c_A Ubiquitin-like protein 99.8 7.1E-20 2.4E-24 116.1 10.6 79 40-119 30-108 (125)
43 1uh6_A Ubiquitin-like 5; beta- 99.8 2.4E-20 8.3E-25 113.5 8.0 71 42-112 28-98 (100)
44 1wx7_A Ubiquilin 3; ubiquitin- 99.8 5.4E-20 1.8E-24 113.5 9.3 79 40-119 15-93 (106)
45 2klc_A Ubiquilin-1; ubiquitin- 99.8 1.7E-19 5.8E-24 110.5 11.3 82 35-117 18-99 (101)
46 3u5e_m 60S ribosomal protein L 99.8 6.1E-22 2.1E-26 126.1 0.3 78 43-120 1-78 (128)
47 4a20_A Ubiquitin-like protein 99.8 1.2E-19 4E-24 110.5 10.1 77 39-115 16-96 (98)
48 2bwf_A Ubiquitin-like protein 99.8 1.6E-19 5.6E-24 104.9 10.4 72 43-115 5-76 (77)
49 3m62_B UV excision repair prot 99.8 4.5E-20 1.5E-24 114.0 8.3 74 43-116 2-75 (106)
50 1ttn_A DC-UBP, dendritic cell- 99.8 1E-19 3.5E-24 112.3 9.6 79 40-118 21-99 (106)
51 2fnj_B Transcription elongatio 99.8 5.1E-20 1.8E-24 115.0 7.7 77 43-120 1-85 (118)
52 1v5o_A 1700011N24RIK protein; 99.8 8.2E-20 2.8E-24 112.0 8.5 78 41-118 6-88 (102)
53 3u30_A Ubiquitin, linear DI-ub 99.8 2.3E-19 7.8E-24 119.2 11.0 80 39-118 17-96 (172)
54 1wju_A NEDD8 ultimate buster-1 99.8 1.2E-19 4.1E-24 110.4 8.2 74 44-118 17-94 (100)
55 3u5c_f 40S ribosomal protein S 99.8 1.7E-21 5.9E-26 127.1 0.0 77 43-119 1-77 (152)
56 2lxa_A Ubiquitin-like protein 99.8 6.3E-20 2.1E-24 109.5 6.8 73 43-115 2-78 (87)
57 3m63_B Ubiquitin domain-contai 99.8 2.4E-20 8.2E-25 114.3 4.5 93 19-114 7-99 (101)
58 1v2y_A 3300001G02RIK protein; 99.8 9.5E-20 3.3E-24 112.0 6.2 78 41-118 6-99 (105)
59 4ajy_B Transcription elongatio 99.8 4.2E-19 1.5E-23 110.5 9.0 77 43-120 1-85 (118)
60 1se9_A Ubiquitin family; ubiqu 99.8 1.9E-18 6.7E-23 109.0 10.4 81 39-119 13-107 (126)
61 3b08_A Polyubiquitin-C, ubiqui 99.8 2.5E-18 8.6E-23 111.5 10.2 76 43-118 1-76 (152)
62 3rt3_B Ubiquitin-like protein 99.8 2.4E-18 8.3E-23 112.8 9.6 75 43-117 3-80 (159)
63 1wgh_A Ubiquitin-like 3, HCG-1 99.8 8.8E-18 3E-22 104.9 11.1 79 39-117 13-101 (116)
64 2gow_A HCG-1 protein, ubiquiti 99.8 4.2E-18 1.4E-22 107.7 9.5 79 40-118 15-103 (125)
65 2kd0_A LRR repeats and ubiquit 99.8 9.2E-18 3.1E-22 99.7 9.3 73 41-114 11-83 (85)
66 1wia_A Hypothetical ubiquitin- 99.8 8E-18 2.7E-22 101.7 9.2 75 40-117 5-80 (95)
67 2daf_A FLJ35834 protein; hypot 99.7 1.1E-17 3.9E-22 103.7 9.5 76 40-115 13-89 (118)
68 1v5t_A 8430435I17RIK protein; 99.7 3.1E-18 1.1E-22 102.8 6.9 75 40-115 5-83 (90)
69 1wgg_A Ubiquitin carboxyl-term 99.7 4.1E-18 1.4E-22 103.4 7.4 72 41-114 6-78 (96)
70 4dbg_A Ranbp-type and C3HC4-ty 99.7 1.9E-17 6.7E-22 101.4 10.3 72 43-114 25-99 (105)
71 2kdb_A Homocysteine-responsive 99.7 4.6E-18 1.6E-22 103.6 7.2 73 40-112 21-99 (99)
72 1wxv_A BAG-family molecular ch 99.7 1.5E-17 5.2E-22 100.0 9.0 75 40-115 5-85 (92)
73 1x1m_A Ubiquitin-like protein 99.7 8.4E-18 2.9E-22 103.8 7.8 76 41-116 11-101 (107)
74 2io1_B Small ubiquitin-related 99.7 4.1E-17 1.4E-21 98.6 10.0 80 40-119 5-84 (94)
75 3ai5_A Yeast enhanced green fl 99.7 4.4E-17 1.5E-21 116.6 11.7 78 39-116 230-307 (307)
76 1v86_A DNA segment, CHR 7, way 99.7 9.5E-18 3.3E-22 101.6 5.4 73 41-115 16-88 (95)
77 2io0_B Small ubiquitin-related 99.7 1.8E-16 6E-21 95.2 10.5 80 40-119 3-82 (91)
78 2kjr_A CG11242; UBL, ubiquitin 99.7 6.6E-17 2.3E-21 97.8 8.6 73 40-112 13-93 (95)
79 4b6w_A Tubulin-specific chaper 99.7 1.3E-16 4.3E-21 94.9 8.9 72 44-115 4-84 (86)
80 2xzm_9 RPS31E; ribosome, trans 99.7 2.2E-18 7.5E-23 115.5 0.1 72 43-119 1-72 (189)
81 2dzm_A FAS-associated factor 1 99.7 8.9E-17 3E-21 98.0 7.1 74 42-116 8-83 (100)
82 2d07_B Ubiquitin-like protein 99.7 6.6E-16 2.3E-20 93.1 10.2 79 40-118 15-93 (93)
83 2dzj_A Synaptic glycoprotein S 99.7 1.2E-16 4.1E-21 95.4 6.8 70 42-111 10-85 (88)
84 1oqy_A HHR23A, UV excision rep 99.7 1.4E-16 4.9E-21 116.6 7.6 78 41-118 6-87 (368)
85 2kj6_A Tubulin folding cofacto 99.7 4.4E-16 1.5E-20 94.5 7.6 73 41-113 13-94 (97)
86 1wz0_A Ubiquitin-like protein 99.6 9.3E-16 3.2E-20 94.1 8.8 80 40-119 22-101 (104)
87 1v6e_A Cytoskeleton-associated 99.6 8.8E-16 3E-20 92.8 8.4 72 42-113 7-86 (95)
88 1wf9_A NPL4 family protein; be 99.6 3.6E-16 1.2E-20 96.5 6.5 73 41-114 6-94 (107)
89 2eke_C Ubiquitin-like protein 99.6 2.2E-15 7.6E-20 92.6 9.5 78 40-118 29-106 (106)
90 1t0y_A Tubulin folding cofacto 99.6 2.5E-15 8.6E-20 94.7 9.0 74 41-114 5-86 (122)
91 2k8h_A Small ubiquitin protein 99.6 2E-15 7E-20 93.3 6.8 80 39-118 23-102 (110)
92 1wm3_A Ubiquitin-like protein 99.6 1.4E-14 4.8E-19 83.3 9.6 70 43-112 2-71 (72)
93 3a4r_A Nfatc2-interacting prot 99.6 4.4E-14 1.5E-18 82.6 9.7 73 40-112 5-78 (79)
94 2kzr_A Ubiquitin thioesterase 99.6 7.7E-15 2.6E-19 87.1 5.9 71 43-114 1-77 (86)
95 3shq_A UBLCP1; phosphatase, hy 99.5 8.7E-15 3E-19 105.6 7.2 74 41-115 4-80 (320)
96 1wjn_A Tubulin-folding protein 99.5 2.6E-13 8.9E-18 82.1 9.2 73 42-114 9-92 (97)
97 3kyd_D Small ubiquitin-related 99.4 1.5E-12 5.2E-17 80.8 10.7 78 40-117 38-115 (115)
98 3tix_A Ubiquitin-like protein 99.4 1.6E-12 5.4E-17 86.8 8.1 79 40-119 55-133 (207)
99 3pge_A SUMO-modified prolifera 99.4 5E-12 1.7E-16 85.4 10.4 80 39-119 26-105 (200)
100 3goe_A DNA repair protein RAD6 99.3 5.9E-11 2E-15 68.0 10.1 72 42-113 9-81 (82)
101 3v7o_A Minor nucleoprotein VP3 99.2 1E-12 3.5E-17 88.8 0.4 82 38-120 17-98 (227)
102 2pjh_A Protein NPL4, nuclear p 99.1 2.2E-11 7.5E-16 71.2 3.4 71 41-112 3-78 (80)
103 2jxx_A Nfatc2-interacting prot 99.1 1E-09 3.5E-14 66.2 9.2 74 39-112 22-96 (97)
104 2kdi_A Ubiquitin, vacuolar pro 99.0 1.5E-12 5E-17 81.1 -6.1 65 1-65 44-111 (114)
105 3uf8_A Ubiquitin-like protein 99.0 5.1E-09 1.7E-13 71.3 9.5 82 37-119 16-97 (209)
106 1yx5_B Ubiquitin; proteasome, 98.9 1.4E-09 4.9E-14 65.5 5.3 54 1-54 35-88 (98)
107 3phx_B Ubiquitin-like protein 98.9 1.5E-09 5.1E-14 62.8 5.1 40 1-40 39-78 (79)
108 3ix6_A TS, tsase, thymidylate 98.9 2.1E-10 7.2E-15 83.4 0.0 83 35-118 14-96 (360)
109 2faz_A Ubiquitin-like containi 98.9 3E-09 1E-13 61.3 4.9 39 1-39 39-77 (78)
110 2l76_A Nfatc2-interacting prot 98.9 3E-08 1E-12 59.1 9.2 74 40-114 19-92 (95)
111 2lxa_A Ubiquitin-like protein 98.9 1.7E-09 5.8E-14 64.1 3.8 40 1-40 39-79 (87)
112 4ajy_B Transcription elongatio 98.9 2.3E-09 8E-14 66.6 4.3 40 1-40 36-82 (118)
113 2kk8_A Uncharacterized protein 98.8 2.1E-09 7.1E-14 63.2 3.7 39 1-39 45-84 (84)
114 2wyq_A HHR23A, UV excision rep 98.8 4.6E-09 1.6E-13 61.4 4.9 40 1-40 43-82 (85)
115 4fbj_B NEDD8; effector-HOST ta 98.8 4E-09 1.4E-13 62.4 4.6 41 1-41 35-75 (88)
116 4a20_A Ubiquitin-like protein 98.8 4.6E-09 1.6E-13 63.5 4.7 40 1-40 57-97 (98)
117 3plu_A Ubiquitin-like modifier 98.8 6.4E-09 2.2E-13 62.0 4.9 37 1-37 56-92 (93)
118 2uyz_B Small ubiquitin-related 98.8 4.1E-09 1.4E-13 60.9 3.8 40 1-40 38-77 (79)
119 3n3k_B Ubiquitin; hydrolase, p 98.8 8.2E-09 2.8E-13 60.2 4.9 40 1-40 38-77 (85)
120 3v6c_B Ubiquitin; structural g 98.8 7.4E-09 2.5E-13 61.5 4.6 39 1-39 52-90 (91)
121 1wju_A NEDD8 ultimate buster-1 98.8 4.7E-09 1.6E-13 63.6 3.7 37 1-37 54-90 (100)
122 1ndd_A NEDD8, protein (ubiquit 98.8 1.1E-08 3.7E-13 58.3 5.1 40 1-40 35-74 (76)
123 1uel_A HHR23B, UV excision rep 98.8 1.2E-08 4.2E-13 61.1 5.4 40 1-40 38-77 (95)
124 4dwf_A HLA-B-associated transc 98.8 8.7E-09 3E-13 61.0 4.7 39 1-40 40-78 (90)
125 4eew_A Large proline-rich prot 98.8 8.6E-09 2.9E-13 60.7 4.4 37 1-38 52-88 (88)
126 2fnj_B Transcription elongatio 98.8 5.5E-09 1.9E-13 65.0 3.7 38 1-38 36-80 (118)
127 3dbh_I NEDD8; cell cycle, acti 98.8 7.2E-09 2.5E-13 60.9 4.1 40 1-40 47-86 (88)
128 2bwf_A Ubiquitin-like protein 98.8 1.4E-08 4.7E-13 58.2 5.1 39 1-39 38-76 (77)
129 3m62_B UV excision repair prot 98.8 8.4E-09 2.9E-13 63.1 4.3 40 1-40 36-75 (106)
130 3a9j_A Ubiquitin; protein comp 98.7 1.6E-08 5.5E-13 57.6 5.2 40 1-40 35-74 (76)
131 4hcn_B Polyubiquitin, ubiquiti 98.7 1.1E-08 3.9E-13 61.6 4.5 40 1-40 57-96 (98)
132 1wyw_B Ubiquitin-like protein 98.7 9.9E-09 3.4E-13 61.8 4.1 40 1-40 56-95 (97)
133 2kan_A Uncharacterized protein 98.7 9.2E-09 3.1E-13 61.6 4.0 40 1-40 49-89 (94)
134 2dzi_A Ubiquitin-like protein 98.7 1.1E-08 3.9E-13 59.1 4.2 39 1-39 42-80 (81)
135 3mtn_B UBA80, ubcep1, ubiquiti 98.7 1.5E-08 5.2E-13 59.0 4.8 40 1-40 38-77 (85)
136 1sif_A Ubiquitin; hydrophobic 98.7 1.4E-08 4.7E-13 60.0 4.5 40 1-40 44-83 (88)
137 3k9o_B Ubiquitin, UBB+1; E2-25 98.7 1.9E-08 6.4E-13 60.2 5.2 44 1-44 36-79 (96)
138 1wy8_A NP95-like ring finger p 98.7 1.3E-08 4.3E-13 60.1 4.3 40 1-40 44-83 (89)
139 2l7r_A Ubiquitin-like protein 98.7 1.1E-08 3.8E-13 61.1 3.7 40 1-40 52-91 (93)
140 2klc_A Ubiquilin-1; ubiquitin- 98.7 2.5E-08 8.5E-13 60.5 5.3 40 1-40 59-98 (101)
141 1uh6_A Ubiquitin-like 5; beta- 98.7 8.6E-09 2.9E-13 62.4 3.1 37 1-37 63-99 (100)
142 2kd0_A LRR repeats and ubiquit 98.7 1.8E-08 6.3E-13 59.2 4.4 39 1-39 46-84 (85)
143 2hj8_A Interferon-induced 17 k 98.7 6.8E-09 2.3E-13 61.4 2.5 40 1-40 39-78 (88)
144 1wh3_A 59 kDa 2'-5'-oligoadeny 98.7 1.5E-08 5.2E-13 59.4 4.0 40 1-40 42-81 (87)
145 3l0w_B Monoubiquitinated proli 98.7 2.5E-08 8.4E-13 65.8 5.3 42 1-42 35-76 (169)
146 4da1_A Protein phosphatase 1K, 98.7 2E-09 7E-14 79.3 0.0 79 40-119 28-106 (389)
147 3vdz_A Ubiquitin-40S ribosomal 98.7 2.7E-08 9.4E-13 61.3 5.1 40 1-40 70-109 (111)
148 1yqb_A Ubiquilin 3; structural 98.7 2E-08 6.7E-13 60.9 4.3 41 1-41 56-96 (100)
149 1wgd_A Homocysteine-responsive 98.7 1.5E-08 5.1E-13 60.4 3.6 40 1-40 46-87 (93)
150 3m63_B Ubiquitin domain-contai 98.7 1.6E-08 5.6E-13 61.3 3.5 38 1-38 62-99 (101)
151 2daf_A FLJ35834 protein; hypot 98.7 3.2E-08 1.1E-12 61.3 4.7 42 1-42 51-92 (118)
152 2al3_A TUG long isoform; TUG U 98.6 1.5E-07 5.2E-12 55.5 7.0 74 41-114 8-81 (90)
153 3b1l_X E3 ubiquitin-protein li 98.1 3.9E-09 1.3E-13 60.4 0.0 40 1-40 35-74 (76)
154 1ttn_A DC-UBP, dendritic cell- 98.6 3.3E-08 1.1E-12 60.4 4.0 40 1-40 58-97 (106)
155 1x1m_A Ubiquitin-like protein 98.6 4.7E-08 1.6E-12 59.8 4.5 40 1-40 61-101 (107)
156 1we7_A SF3A1 protein; structur 98.6 4.5E-08 1.5E-12 60.6 4.3 40 1-40 70-109 (115)
157 3q3f_A Ribonuclease/ubiquitin 98.6 1.7E-08 5.7E-13 67.8 2.4 47 1-47 140-186 (189)
158 1we6_A Splicing factor, putati 98.6 3.3E-08 1.1E-12 60.8 3.5 40 1-40 66-105 (111)
159 1j8c_A Ubiquitin-like protein 98.6 6.7E-08 2.3E-12 60.8 4.8 40 1-40 66-105 (125)
160 1wx7_A Ubiquilin 3; ubiquitin- 98.6 5.2E-08 1.8E-12 59.4 4.2 40 1-40 51-90 (106)
161 2bps_A YUKD protein; ubiquitin 98.6 3.4E-07 1.2E-11 53.2 7.2 69 43-111 5-80 (81)
162 1wx8_A Riken cDNA 4931431F19; 98.6 2E-08 6.7E-13 60.2 2.0 40 1-40 51-90 (96)
163 2ojr_A Ubiquitin; lanthide-bin 98.6 1E-07 3.5E-12 58.6 5.2 40 1-40 70-109 (111)
164 1wgh_A Ubiquitin-like 3, HCG-1 98.5 1.2E-07 4.1E-12 58.9 4.8 39 2-40 60-100 (116)
165 4dbg_A Ranbp-type and C3HC4-ty 98.5 1.5E-07 5.2E-12 57.4 4.9 38 1-38 61-99 (105)
166 4b6w_A Tubulin-specific chaper 98.5 8.4E-08 2.9E-12 56.5 3.6 39 1-39 39-84 (86)
167 1se9_A Ubiquitin family; ubiqu 98.5 1.5E-07 5.2E-12 59.1 5.0 40 1-40 57-104 (126)
168 1wxv_A BAG-family molecular ch 98.5 1.1E-07 3.8E-12 56.4 3.7 40 1-40 46-86 (92)
169 1wgg_A Ubiquitin carboxyl-term 98.5 8E-08 2.7E-12 57.7 2.8 39 1-40 42-80 (96)
170 1v5t_A 8430435I17RIK protein; 98.5 1.3E-07 4.4E-12 56.1 3.7 40 1-40 42-84 (90)
171 1v5o_A 1700011N24RIK protein; 98.5 9E-08 3.1E-12 58.0 3.0 40 1-40 46-86 (102)
172 4efo_A Serine/threonine-protei 98.4 1.4E-06 4.8E-11 52.0 7.8 63 51-113 22-87 (94)
173 3u5e_m 60S ribosomal protein L 98.4 2.4E-08 8.2E-13 63.0 0.0 40 1-40 35-74 (128)
174 2kc2_A Talin-1, F1; FERM, adhe 98.4 6.6E-07 2.3E-11 56.3 6.4 71 44-114 13-122 (128)
175 2kdb_A Homocysteine-responsive 98.4 1E-07 3.6E-12 57.6 2.5 34 2-35 62-98 (99)
176 3u5c_f 40S ribosomal protein S 98.4 3.7E-08 1.3E-12 63.9 0.0 40 1-40 35-74 (152)
177 1wia_A Hypothetical ubiquitin- 98.3 5.1E-07 1.8E-11 53.8 4.1 37 4-40 42-79 (95)
178 2gow_A HCG-1 protein, ubiquiti 98.3 4.3E-07 1.5E-11 57.1 3.9 38 3-40 62-101 (125)
179 3qx1_A FAS-associated factor 1 98.3 1.3E-05 4.5E-10 46.7 8.9 72 41-113 6-82 (84)
180 2kjr_A CG11242; UBL, ubiquitin 98.2 9.4E-07 3.2E-11 52.9 3.8 37 1-37 52-94 (95)
181 2dzj_A Synaptic glycoprotein S 98.2 4.4E-07 1.5E-11 53.6 1.9 35 1-35 49-85 (88)
182 1t0y_A Tubulin folding cofacto 98.2 1.2E-06 4.2E-11 54.7 3.7 40 1-40 42-88 (122)
183 2kj6_A Tubulin folding cofacto 98.2 1E-06 3.5E-11 53.0 2.7 37 1-37 51-94 (97)
184 3ai5_A Yeast enhanced green fl 98.1 2.1E-06 7.2E-11 61.5 4.5 39 1-39 268-306 (307)
185 1v2y_A 3300001G02RIK protein; 98.1 6.8E-07 2.3E-11 54.5 1.7 38 4-41 60-98 (105)
186 1v86_A DNA segment, CHR 7, way 98.1 4.2E-07 1.4E-11 54.4 0.4 38 1-39 51-88 (95)
187 1v6e_A Cytoskeleton-associated 98.1 1.9E-06 6.5E-11 51.4 3.0 38 1-38 43-87 (95)
188 2dzm_A FAS-associated factor 1 98.0 1.4E-06 4.7E-11 52.7 1.2 39 1-40 43-83 (100)
189 1oqy_A HHR23A, UV excision rep 98.0 4.9E-06 1.7E-10 61.0 4.1 37 1-37 45-81 (368)
190 2io1_B Small ubiquitin-related 98.0 8E-06 2.8E-10 48.7 4.3 40 1-40 42-81 (94)
191 3ivf_A Talin-1; FERM domain, c 98.0 0.00024 8.2E-09 51.8 12.9 99 13-114 59-167 (371)
192 2dzk_A UBX domain-containing p 98.0 9.2E-05 3.1E-09 45.2 9.0 73 41-113 12-89 (109)
193 1wm3_A Ubiquitin-like protein 97.9 1.8E-05 6.2E-10 44.8 4.3 36 1-36 36-71 (72)
194 2io0_B Small ubiquitin-related 97.9 2.4E-05 8.3E-10 46.4 4.9 40 1-40 40-79 (91)
195 1wj4_A KIAA0794 protein; UBX d 97.9 0.00015 5E-09 45.4 8.6 72 41-113 42-118 (124)
196 2d07_B Ubiquitin-like protein 97.8 2.7E-05 9.3E-10 46.3 4.5 40 1-40 52-91 (93)
197 2xzm_9 RPS31E; ribosome, trans 97.7 4.4E-06 1.5E-10 55.8 0.0 35 1-40 35-69 (189)
198 1ryj_A Unknown; beta/alpha pro 97.7 0.0012 4.2E-08 36.9 10.2 68 41-118 3-70 (70)
199 3a4r_A Nfatc2-interacting prot 97.7 3.6E-05 1.2E-09 44.3 3.8 36 1-36 43-78 (79)
200 4a3p_A Ubiquitin carboxyl-term 97.7 0.00041 1.4E-08 47.2 9.0 79 42-120 127-214 (217)
201 3jyu_A Ubiquitin carboxyl-term 97.7 0.00087 3E-08 46.0 10.7 78 42-119 139-225 (231)
202 2daj_A KIAA0977 protein, COBL- 97.6 0.00013 4.5E-09 42.3 5.4 67 39-105 7-76 (91)
203 2eke_C Ubiquitin-like protein 97.6 6.8E-05 2.3E-09 45.7 4.5 40 1-40 65-104 (106)
204 1wf9_A NPL4 family protein; be 97.6 1.2E-05 4E-10 49.0 0.7 40 1-40 42-96 (107)
205 3shq_A UBLCP1; phosphatase, hy 97.6 2E-05 6.8E-10 56.8 2.0 43 1-43 39-84 (320)
206 1wz0_A Ubiquitin-like protein 97.5 4.1E-05 1.4E-09 46.5 2.4 40 1-40 59-98 (104)
207 2cr5_A Reproduction 8; UBX dom 97.5 0.0008 2.7E-08 41.0 7.8 72 42-114 23-98 (109)
208 1vjk_A Molybdopterin convertin 97.5 0.0025 8.4E-08 37.9 9.6 74 40-118 7-98 (98)
209 1wjn_A Tubulin-folding protein 97.4 0.00026 8.8E-09 42.1 4.6 39 1-39 47-93 (97)
210 2k8h_A Small ubiquitin protein 97.4 5.5E-05 1.9E-09 46.4 1.5 41 1-41 61-101 (110)
211 1s3s_G P47 protein; AAA ATPase 97.3 0.00092 3.2E-08 41.8 6.7 67 41-107 51-121 (127)
212 3rpf_C Molybdopterin convertin 97.3 0.0019 6.5E-08 36.4 7.3 71 43-118 1-74 (74)
213 2l32_A Small archaeal modifier 97.3 0.0013 4.3E-08 37.4 6.3 66 43-119 1-66 (74)
214 3ivf_A Talin-1; FERM domain, c 97.2 0.0049 1.7E-07 44.8 10.9 77 42-119 3-96 (371)
215 2kzr_A Ubiquitin thioesterase 97.2 0.00017 6E-09 41.9 2.3 39 1-39 35-78 (86)
216 1tyg_B YJBS; alpha beta barrel 97.1 0.0019 6.4E-08 37.8 6.3 68 41-118 19-87 (87)
217 2juo_A GA-binding protein alph 97.1 0.004 1.4E-07 35.9 7.3 61 55-115 5-65 (89)
218 1oey_A P67-PHOX, neutrophil cy 97.1 0.0034 1.2E-07 36.4 7.0 48 41-90 4-51 (83)
219 3kyd_D Small ubiquitin-related 97.1 0.0012 4E-08 40.7 5.3 39 1-39 75-113 (115)
220 3pge_A SUMO-modified prolifera 97.1 0.0025 8.6E-08 42.9 7.2 52 1-52 63-118 (200)
221 1f0z_A THis protein; ubiquitin 96.6 0.0032 1.1E-07 34.7 4.2 58 56-118 9-66 (66)
222 1vd2_A Protein kinase C, IOTA 96.5 0.026 8.8E-07 33.1 7.7 50 41-91 5-55 (89)
223 3po0_A Small archaeal modifier 96.5 0.034 1.2E-06 32.1 8.2 61 53-118 18-89 (89)
224 4e71_A Plexin-B2, MM1; transme 96.4 0.047 1.6E-06 33.2 8.9 72 43-114 12-110 (111)
225 3goe_A DNA repair protein RAD6 96.4 0.0074 2.5E-07 34.5 4.7 37 1-37 44-81 (82)
226 2r2o_A Plexin-B1; effector dom 96.3 0.039 1.3E-06 34.8 8.2 63 53-115 41-129 (138)
227 3tix_A Ubiquitin-like protein 96.3 0.0035 1.2E-07 42.0 3.5 40 1-40 91-130 (207)
228 3dwg_C 9.5 kDa culture filtrat 96.3 0.037 1.3E-06 32.2 7.7 61 56-118 20-93 (93)
229 1wgk_A Riken cDNA 2900073H19 p 96.2 0.047 1.6E-06 33.4 8.2 75 41-118 10-108 (114)
230 1fm0_D Molybdopterin convertin 96.2 0.026 8.8E-07 31.9 6.4 59 54-118 18-81 (81)
231 2q5w_D Molybdopterin convertin 96.1 0.015 5E-07 32.7 5.0 60 53-118 16-77 (77)
232 1h4r_A Merlin; FERM, neurofibr 96.1 0.085 2.9E-06 37.3 10.1 75 39-114 19-98 (314)
233 1ef1_A Moesin; membrane, FERM 96.0 0.072 2.5E-06 37.2 9.5 72 42-114 1-78 (294)
234 2k5p_A THis protein, thiamine- 95.9 0.0062 2.1E-07 34.8 3.0 62 51-119 6-70 (78)
235 2kl0_A Putative thiamin biosyn 95.9 0.0082 2.8E-07 33.8 3.3 61 51-119 6-66 (73)
236 2cu3_A Unknown function protei 95.9 0.033 1.1E-06 30.3 5.6 60 51-118 5-64 (64)
237 2qjl_A URM1, ubiquitin-related 95.2 0.22 7.6E-06 29.3 10.2 63 53-118 20-99 (99)
238 2i1j_A Moesin; FERM, coiled-co 95.2 0.17 5.9E-06 39.0 9.6 73 41-114 3-81 (575)
239 2kvr_A Ubiquitin carboxyl-term 95.2 0.028 9.5E-07 35.2 4.2 33 55-87 58-90 (130)
240 1rws_A Hypothetical protein PF 95.0 0.008 2.7E-07 34.1 1.2 54 56-118 24-77 (77)
241 3v7o_A Minor nucleoprotein VP3 95.0 0.0042 1.4E-07 42.1 0.0 40 1-40 55-94 (227)
242 2g1e_A Hypothetical protein TA 94.8 0.17 6E-06 28.9 6.8 62 56-118 18-90 (90)
243 3qij_A Protein 4.1; cytoskelet 94.7 0.14 4.9E-06 36.0 7.4 76 39-114 14-95 (296)
244 2k9x_A Tburm1, uncharacterized 94.7 0.014 4.7E-07 35.6 1.8 75 42-118 4-102 (110)
245 3h6n_A Plexin-D1; structural g 94.5 0.48 1.7E-05 29.4 9.6 64 51-114 15-104 (127)
246 2l52_A Methanosarcina acetivor 94.3 0.31 1.1E-05 28.7 7.2 73 43-118 4-99 (99)
247 4e74_A Plexin-A4; RBD, structu 94.2 0.33 1.1E-05 29.8 7.2 63 53-115 27-115 (117)
248 2jxx_A Nfatc2-interacting prot 94.1 0.056 1.9E-06 32.1 3.5 36 1-36 61-96 (97)
249 1wgy_A RAP guanine nucleotide 94.0 0.44 1.5E-05 28.6 7.3 73 43-115 10-87 (104)
250 1j0g_A Hypothetical protein 18 93.7 0.32 1.1E-05 27.8 5.9 66 54-119 25-91 (92)
251 4efo_A Serine/threonine-protei 93.5 0.17 5.8E-06 29.8 4.8 31 1-31 48-80 (94)
252 1wgr_A Growth factor receptor- 93.5 0.36 1.2E-05 28.8 6.3 46 41-86 8-54 (100)
253 2ylm_A Ubiquitin carboxyl-term 93.3 0.71 2.4E-05 35.3 9.3 86 1-86 171-286 (530)
254 1ip9_A BEM1 protein; ubiquitin 93.3 0.4 1.4E-05 27.6 6.0 48 41-90 11-58 (85)
255 2l76_A Nfatc2-interacting prot 92.7 0.19 6.4E-06 29.7 4.2 39 1-39 55-93 (95)
256 3ix6_A TS, tsase, thymidylate 92.5 0.02 7E-07 41.7 -0.2 42 1-42 55-96 (360)
257 3onh_A Ubiquitin-activating en 92.3 0.54 1.9E-05 29.2 6.0 56 56-112 9-77 (127)
258 3uf8_A Ubiquitin-like protein 92.2 0.19 6.3E-06 33.8 4.2 41 1-41 55-95 (209)
259 2kmm_A Guanosine-3',5'-BIS(dip 91.9 0.73 2.5E-05 25.1 5.9 62 43-113 1-62 (73)
260 2inc_C TOUB protein; DIIRON, 4 91.8 1.1 3.6E-05 25.7 8.5 61 54-114 14-82 (83)
261 1v8c_A MOAD related protein; r 91.7 0.46 1.6E-05 30.9 5.5 63 56-120 17-89 (168)
262 3kuz_A Plexin-C1; structural g 91.5 1.5 5.1E-05 27.1 7.3 61 53-113 39-125 (126)
263 1y8x_B Ubiquitin-activating en 91.2 0.59 2E-05 27.7 5.2 59 54-112 6-82 (98)
264 2ylm_A Ubiquitin carboxyl-term 91.1 0.28 9.5E-06 37.5 4.6 33 55-87 38-70 (530)
265 3hm6_X Plexin-B1; structural g 90.2 3.2 0.00011 32.4 9.6 63 53-115 274-362 (644)
266 1q1o_A Cell division control p 90.0 0.71 2.4E-05 27.3 4.7 50 40-89 3-64 (98)
267 2dhz_A RAP guanine nucleotide 89.9 0.99 3.4E-05 27.7 5.5 73 42-114 9-92 (120)
268 4eut_A Serine/threonine-protei 89.3 3.3 0.00011 29.6 8.9 59 45-103 313-374 (396)
269 3ig3_A Plxna3 protein; plexin 89.2 4.8 0.00017 31.4 9.9 73 43-115 234-335 (627)
270 3au4_A Myosin-X; protein-prote 89.0 1.8 6.1E-05 33.0 7.6 48 40-87 214-263 (555)
271 3pvl_A Myosin VIIA isoform 1; 87.7 2.5 8.6E-05 33.1 7.8 48 40-87 261-309 (655)
272 4da1_A Protein phosphatase 1K, 87.3 0.11 3.9E-06 37.9 0.0 41 1-41 64-104 (389)
273 2c7h_A RBBP6, retinoblastoma-b 87.1 2.6 9E-05 24.3 5.7 71 44-118 8-84 (86)
274 2hj1_A Hypothetical protein; s 86.9 3.2 0.00011 24.4 7.2 69 42-115 12-86 (97)
275 2v1y_A Phosphatidylinositol-4, 86.8 2.3 7.8E-05 25.6 5.6 64 41-104 18-95 (108)
276 3u52_E Phenol hydroxylase comp 85.4 4.5 0.00015 24.7 7.3 61 53-113 38-108 (119)
277 3ge3_C Toluene-4-monooxygenase 84.7 3.9 0.00014 23.3 8.9 70 44-113 5-82 (84)
278 3hvz_A Uncharacterized protein 84.6 3.7 0.00013 23.0 5.9 61 44-113 7-67 (78)
279 2kmc_A Fermitin family homolog 84.1 4.8 0.00016 23.8 8.2 71 43-113 20-98 (102)
280 3qa8_A MGC80376 protein; kinas 84.1 1.3 4.6E-05 34.8 4.6 51 51-101 320-371 (676)
281 4gmv_A RAS-associated and plec 82.5 5.1 0.00017 28.1 6.6 41 41-81 30-70 (281)
282 2r2q_A Gamma-aminobutyric acid 80.1 3.4 0.00012 24.7 4.5 61 41-101 26-93 (110)
283 2eel_A Cell death activator CI 79.7 5.1 0.00017 23.3 4.9 48 63-113 28-77 (91)
284 3tca_A Amyloid beta A4 precurs 79.4 8.2 0.00028 26.3 6.9 41 41-81 33-73 (291)
285 1f2r_I Inhibitor of caspase-ac 78.9 5.5 0.00019 23.6 5.0 47 63-111 37-87 (100)
286 2pjh_A Protein NPL4, nuclear p 78.2 0.68 2.3E-05 26.1 0.9 36 1-36 38-78 (80)
287 3h9d_A ATG8, microtubule-assoc 78.1 6.5 0.00022 24.0 5.3 47 55-101 50-97 (119)
288 2zjd_A Microtubule-associated 78.1 8.1 0.00028 23.9 5.8 47 55-101 55-103 (130)
289 1eo6_A GATE-16, golgi-associat 78.0 8.1 0.00028 23.4 5.7 47 55-101 47-94 (117)
290 1pqs_A Cell division control p 76.1 2.3 7.7E-05 24.0 2.6 36 54-89 3-43 (77)
291 4a6q_A Histone deacetylase com 74.9 13 0.00045 23.4 6.6 64 54-117 55-141 (143)
292 3rui_B Autophagy-related prote 74.0 12 0.00041 22.7 5.7 46 55-100 49-95 (118)
293 3r8s_T 50S ribosomal protein L 72.9 9.6 0.00033 22.1 4.9 38 53-90 28-66 (93)
294 3m95_A Autophagy related prote 72.7 7.3 0.00025 24.0 4.5 47 55-101 55-102 (125)
295 3hk0_A Growth factor receptor- 72.4 12 0.00042 25.7 6.1 40 41-80 7-46 (256)
296 1vq8_S 50S ribosomal protein L 68.9 9.1 0.00031 21.9 4.1 34 53-86 23-56 (85)
297 4gdk_A Ubiquitin-like protein 66.6 16 0.00055 21.0 5.7 47 54-100 21-69 (91)
298 2al6_A Focal adhesion kinase 1 66.3 5.8 0.0002 28.7 3.6 54 47-100 12-76 (375)
299 1wmh_B Partitioning defective- 66.0 16 0.00056 20.9 5.7 45 45-89 7-54 (86)
300 3w1s_C Ubiquitin-like protein 65.9 17 0.00057 21.0 6.2 44 55-100 25-69 (91)
301 2zjr_Q 50S ribosomal protein L 65.1 12 0.0004 21.9 4.1 35 55-89 25-60 (95)
302 3tve_T 50S ribosomal protein L 64.7 12 0.00041 21.7 4.1 38 53-90 22-60 (92)
303 2nvu_B Maltose binding protein 64.7 21 0.00072 28.3 6.8 59 54-112 713-789 (805)
304 3j21_T 50S ribosomal protein L 63.4 15 0.00051 21.0 4.3 34 53-86 24-57 (86)
305 1wz3_A Autophagy 12B, ATG12B, 63.0 19 0.00064 21.0 4.8 45 54-100 29-74 (96)
306 2al3_A TUG long isoform; TUG U 61.1 13 0.00044 21.5 3.7 40 1-40 44-83 (90)
307 2bt6_A Adrenodoxin 1; rutheniu 59.3 18 0.00061 21.0 4.4 28 41-68 5-32 (108)
308 4dxa_B KREV interaction trappe 58.1 14 0.00048 25.9 4.3 43 41-87 4-51 (322)
309 2lgx_A Fermitin family homolog 58.0 3.9 0.00013 24.6 1.2 69 43-112 27-100 (112)
310 1c1y_B Proto-onkogene serine/t 56.3 24 0.00083 19.7 5.8 42 45-86 4-45 (77)
311 2ktr_A Sequestosome-1; autopha 54.8 23 0.00078 21.5 4.2 37 53-89 36-84 (117)
312 1t3q_A Quinoline 2-oxidoreduct 53.7 19 0.00066 23.0 4.1 31 40-71 7-37 (168)
313 1wfy_A Regulator of G-protein 53.6 33 0.0011 20.4 5.7 59 50-111 25-85 (104)
314 1ibx_B Chimera of IGG binding 52.8 6.2 0.00021 24.9 1.5 47 63-111 82-132 (145)
315 4eku_A Protein-tyrosine kinase 52.6 27 0.00091 25.5 5.1 52 50-101 35-97 (392)
316 2y3a_A Phosphatidylinositol-4, 52.6 26 0.0009 29.3 5.5 64 41-104 50-127 (1092)
317 2kkc_A Sequestosome-1; P62, PB 52.5 34 0.0011 20.2 4.7 27 63-89 42-69 (102)
318 2ns5_A Partitioning-defective 52.1 31 0.0011 19.7 7.6 70 42-113 2-81 (85)
319 2cu1_A Mitogen-activated prote 52.1 34 0.0012 20.2 4.8 41 45-88 9-50 (103)
320 2bkf_A Zinc-finger protein NBR 51.8 32 0.0011 19.7 6.3 46 41-89 5-52 (87)
321 3f5r_A FACT complex subunit PO 51.4 24 0.00082 23.3 4.3 48 40-87 82-129 (191)
322 1n62_A Carbon monoxide dehydro 51.1 23 0.00078 22.7 4.1 28 43-71 4-31 (166)
323 2eki_A DRG 1, developmentally- 50.6 12 0.0004 21.8 2.4 53 56-114 28-87 (93)
324 3lxf_A Ferredoxin; iron, iron- 50.2 24 0.00081 20.5 3.8 26 44-69 2-27 (104)
325 2j0j_A Focal adhesion kinase 1 50.0 56 0.0019 25.2 6.8 54 47-100 12-76 (656)
326 3hrd_D Nicotinate dehydrogenas 49.9 23 0.0008 22.6 4.0 28 42-70 3-30 (160)
327 3chb_D Cholera toxin; toxin/re 49.5 22 0.00076 20.2 3.3 31 44-74 38-68 (104)
328 2juo_A GA-binding protein alph 49.1 36 0.0012 19.5 5.2 38 2-39 28-65 (89)
329 1ffv_A CUTS, iron-sulfur prote 47.9 27 0.00094 22.3 4.1 28 43-71 4-31 (163)
330 2y5c_A Adrenodoxin-like protei 47.4 39 0.0013 19.6 4.5 26 43-68 6-31 (109)
331 2zkr_s 60S ribosomal protein L 47.2 29 0.00099 22.2 4.0 34 53-86 94-127 (156)
332 2wlb_A ETP1-FD, electron trans 45.3 41 0.0014 19.1 4.8 29 42-70 3-31 (103)
333 4a17_R RPL23A, 60S ribosomal p 43.0 40 0.0014 21.4 4.1 35 52-86 87-121 (150)
334 4dxe_H ACP, acyl carrier prote 42.8 22 0.00074 20.6 2.8 41 54-103 17-58 (101)
335 3u5e_X 60S ribosomal protein L 42.5 38 0.0013 21.3 4.0 34 53-86 80-113 (142)
336 3hui_A Ferredoxin; cytochrome 42.0 40 0.0014 20.4 4.0 28 41-68 20-47 (126)
337 1dd4_C 50S ribosomal protein L 39.2 29 0.00099 16.8 2.5 17 65-81 18-34 (40)
338 2bdq_A Copper homeostasis prot 38.2 12 0.00042 25.3 1.3 14 107-120 55-68 (224)
339 1d4b_A CIDE B, human cell deat 37.2 6.8 0.00023 24.0 -0.1 38 63-101 54-93 (122)
340 1ltr_D ETB-R2, heat-labIle ent 37.2 29 0.001 20.0 2.6 30 45-74 38-67 (113)
341 1rm6_C 4-hydroxybenzoyl-COA re 36.9 46 0.0016 21.1 3.8 27 45-72 5-31 (161)
342 3hhm_A Phosphatidylinositol-4, 36.5 68 0.0023 26.9 5.5 61 43-103 43-117 (1091)
343 3e19_A FEOA; transcriptional r 36.2 23 0.0008 19.1 2.1 18 97-114 30-47 (77)
344 1yfb_A Transition state regula 34.8 19 0.00066 18.9 1.5 29 86-114 19-47 (59)
345 3iz5_X 60S ribosomal protein L 34.6 42 0.0014 21.3 3.3 34 53-86 90-123 (152)
346 2xsk_A CSGC; chaperone; 1.70A 34.4 25 0.00086 20.8 2.1 20 100-119 68-87 (110)
347 1jq4_A Methane monooxygenase c 34.1 64 0.0022 18.1 4.4 30 42-71 4-33 (98)
348 3ny5_A Serine/threonine-protei 34.1 71 0.0024 18.6 5.8 43 44-86 15-57 (96)
349 1tt5_B Ubiquitin-activating en 33.0 15 0.0005 27.3 1.1 58 55-112 343-418 (434)
350 2j58_A WZA, outer membrane lip 32.8 1.3E+02 0.0046 21.4 9.1 80 30-112 138-230 (359)
351 2qcp_X Cation efflux system pr 32.3 26 0.0009 19.5 1.9 38 76-120 34-71 (80)
352 3ddc_B RAS association domain- 32.1 80 0.0028 20.2 4.3 36 51-86 85-122 (163)
353 2gjh_A Designed protein; oblig 31.6 36 0.0012 17.3 2.1 15 105-119 40-54 (62)
354 1rrb_A RAF-1 RBD, RAF proto-on 31.3 85 0.0029 18.6 5.8 43 44-86 20-62 (107)
355 2lx9_A Ferrous iron transport 31.0 37 0.0013 18.9 2.4 21 96-116 24-44 (83)
356 2vb2_X Copper protein, cation 30.4 29 0.00099 19.7 1.9 38 76-120 42-79 (88)
357 2k5l_A FEOA; structure, NESG, 30.4 31 0.0011 18.9 2.0 21 96-116 26-46 (81)
358 2qwv_A UPF0217 protein VC_A105 29.6 75 0.0026 21.2 4.0 66 24-89 49-115 (208)
359 1zrj_A E1B-55KDA-associated pr 29.6 34 0.0012 17.4 1.9 18 62-80 12-29 (50)
360 1frr_A Ferredoxin I; electron 29.5 76 0.0026 17.5 4.2 26 43-69 2-27 (95)
361 1twd_A Copper homeostasis prot 29.5 17 0.00057 25.2 0.8 14 107-120 52-65 (256)
362 1h1j_S THO1 protein; SAP domai 29.3 36 0.0012 17.4 1.9 18 62-80 7-24 (51)
363 3q1c_A LEE-encoded effector ES 29.3 1.5E+02 0.0052 20.9 6.0 37 26-62 60-96 (360)
364 1xlq_A Putidaredoxin, PDX; [2F 28.9 77 0.0026 18.0 3.7 26 44-69 2-27 (106)
365 1uwm_A Ferredoxin VI, FDVI; el 28.9 70 0.0024 18.2 3.5 25 44-68 2-26 (106)
366 3djh_A Macrophage migration in 28.9 56 0.0019 19.0 3.1 24 65-88 76-99 (114)
367 2i4s_A General secretion pathw 28.3 70 0.0024 18.1 3.4 42 72-113 49-92 (105)
368 1b44_D ETB-POL, protein (B-POL 28.0 38 0.0013 20.0 2.1 29 45-73 38-66 (129)
369 2l66_A SSO7C4, transcriptional 27.6 23 0.00079 17.9 1.0 28 87-114 10-37 (53)
370 3mhx_A Putative ferrous iron t 27.5 38 0.0013 18.7 2.1 20 97-116 30-49 (85)
371 3kan_A D-dopachrome tautomeras 27.5 60 0.0021 19.1 3.1 25 65-89 77-101 (117)
372 3bbo_V Ribosomal protein L23; 27.4 25 0.00085 23.3 1.3 32 53-84 132-163 (198)
373 2h3j_A Hypothetical protein PA 27.4 32 0.0011 18.3 1.7 21 96-116 25-45 (75)
374 4dh4_A MIF; trimer, isomerase; 26.9 64 0.0022 18.7 3.1 25 65-89 77-101 (114)
375 1hmj_A RPB5, protein (subunit 26.7 55 0.0019 18.3 2.5 45 64-114 16-60 (78)
376 1wxm_A A-RAF proto-oncogene se 26.6 95 0.0032 17.7 9.0 43 44-86 9-51 (86)
377 2k4y_A FEOA-like protein; GFT 26.4 40 0.0014 18.7 2.0 21 96-116 29-49 (86)
378 2do1_A Nuclear protein HCC-1; 26.0 51 0.0017 17.1 2.2 19 62-81 12-30 (55)
379 3o27_A Putative uncharacterize 25.4 26 0.00091 19.0 1.0 21 98-118 34-54 (68)
380 1wj6_A KIAA0049 protein, RSGI 25.3 1.1E+02 0.0038 18.0 6.5 44 41-87 13-58 (101)
381 2kvu_A MKL/myocardin-like prot 24.8 50 0.0017 18.3 2.1 19 62-81 28-46 (75)
382 3fwu_A Macrophage migration in 24.7 66 0.0023 19.5 2.9 25 65-89 98-122 (133)
383 3fwt_A Macrophage migration in 24.6 72 0.0025 19.3 3.1 25 65-89 98-122 (133)
384 1hfo_A Migration inhibitory fa 24.1 77 0.0026 18.1 3.1 24 65-88 76-99 (113)
385 1uiz_A MIF, macrophage migrati 24.1 77 0.0026 18.2 3.1 24 65-88 77-100 (115)
386 3pvv_A Chromosomal replication 24.0 29 0.001 20.2 1.1 22 62-83 4-25 (101)
387 1j1v_A Chromosomal replication 23.9 27 0.00093 20.0 1.0 20 64-83 2-21 (94)
388 1zps_A PRA-CH, phosphoribosyl- 23.3 86 0.0029 19.5 3.2 76 40-118 21-100 (138)
389 2xcz_A Possible ATLS1-like lig 23.2 82 0.0028 18.1 3.1 24 65-88 77-100 (115)
390 3b64_A Macrophage migration in 22.7 86 0.0029 17.9 3.1 25 65-89 77-101 (112)
391 3t5s_A Gilaa.00834.A, macropha 22.7 83 0.0028 19.1 3.1 26 64-89 97-122 (135)
392 3u2a_A Ggdef family protein; p 22.6 78 0.0027 18.8 2.8 16 104-119 79-94 (129)
393 3u7z_A Putative metal binding 22.2 1.3E+02 0.0043 17.6 6.1 72 41-114 7-98 (101)
394 2wkb_A Macrophage migration in 21.9 89 0.003 18.4 3.1 26 64-89 76-101 (125)
395 2l05_A Serine/threonine-protei 21.6 1.3E+02 0.0044 17.5 9.3 45 42-86 17-61 (95)
396 3abf_A 4-oxalocrotonate tautom 21.3 90 0.0031 15.5 3.2 24 65-88 21-44 (64)
397 2gcx_A FEOA, ferrous iron tran 21.1 37 0.0013 18.1 1.1 18 97-114 25-42 (75)
398 1awd_A Ferredoxin; electron tr 21.1 1.1E+02 0.0037 17.0 3.2 27 44-71 2-28 (94)
399 3ra3_A P1C; coiled coil domain 21.0 65 0.0022 13.8 1.6 12 64-75 15-26 (28)
400 2opa_A Probable tautomerase YW 20.8 90 0.0031 15.4 3.0 23 65-87 20-42 (61)
401 2he4_A Na(+)/H(+) exchange reg 20.7 1.1E+02 0.0038 16.4 4.0 46 73-118 41-88 (90)
402 1f15_A Coat protein; beta barr 20.5 74 0.0025 21.0 2.6 40 11-50 85-128 (218)
403 1otf_A 4-oxalocrotonate tautom 20.5 92 0.0031 15.3 3.0 23 65-87 20-42 (62)
404 2os5_A Acemif; macrophage migr 20.5 1.4E+02 0.0047 17.3 5.4 51 63-119 18-68 (119)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.7e-33 Score=185.45 Aligned_cols=119 Identities=35% Similarity=0.520 Sum_probs=113.4
Q ss_pred CCCCCceEEE-E-ccEEcCCCCCccccccccCCeEEEEee-cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC
Q 038333 1 GIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 77 (120)
Q Consensus 1 ~~~~~~q~l~-~-~g~~L~d~~~l~~y~i~~~s~i~~~~~-~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~ 77 (120)
|+|+++|+|+ | +|++|+|+.++++|++.+++++++.++ .++.|+|+|+..+|+.+.+++++++||++||++|++..|
T Consensus 37 gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g 116 (159)
T 3rt3_B 37 GVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG 116 (159)
T ss_dssp CCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT
T ss_pred CCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 6899999999 9 799999999999999999999999999 589999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 78 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 78 ~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
+|++.|+|+|+|+.|.|+.+|++|+|++|++|++++|++||+
T Consensus 117 ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 117 VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 999999999999999999999999999999999999999995
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=181.95 Aligned_cols=118 Identities=97% Similarity=1.371 Sum_probs=111.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~ 80 (120)
|+|+++|+|+|+|++|+|+.+|.+|++.+++++++.++..+.|.++|+..+|+.+.+++++++||.+||++|+..+|+|+
T Consensus 55 gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 134 (172)
T 3u30_A 55 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 134 (172)
T ss_dssp CCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 81 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 81 ~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+.|+|+|+|+.|.|+.+|++|+|++|++|++++|++||
T Consensus 135 ~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 135 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp GGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 99999999999999999999999999999999999998
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.98 E-value=3.2e-31 Score=172.75 Aligned_cols=118 Identities=97% Similarity=1.371 Sum_probs=114.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~ 80 (120)
|+|+++|+|+|+|+.|+|+.++.+|++.+++++++..+..+.|+|+|+..+|+.+.+++++++||++||++|++..|+|+
T Consensus 35 gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 114 (152)
T 3b08_A 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 114 (152)
T ss_dssp CCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcCh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 81 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 81 ~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+.|+|+|+|+.|.|+.+|++|+|++|++|++++|++||
T Consensus 115 ~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 115 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp GGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred hhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 99999999999999999999999999999999999998
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=122.01 Aligned_cols=78 Identities=35% Similarity=0.561 Sum_probs=75.1
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
.++|+|+|+..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+.+|++|+|++|++|++++|++|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999999987
No 5
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.90 E-value=1.6e-23 Score=125.46 Aligned_cols=77 Identities=56% Similarity=0.936 Sum_probs=72.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++|+|++|++|++++|++||+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999996
No 6
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.90 E-value=4.4e-23 Score=122.26 Aligned_cols=79 Identities=89% Similarity=1.199 Sum_probs=75.6
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
++|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|.|+.+|++|+|+++++|++++|++||+
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999985
No 7
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.90 E-value=2.2e-23 Score=123.65 Aligned_cols=79 Identities=77% Similarity=1.115 Sum_probs=72.9
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
++|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++|+|+++++|++++|++||+
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999999984
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.90 E-value=3.7e-23 Score=123.44 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=76.7
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..+|+|+|+..+|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|.|+.+|++|+|++|++|++++|++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
No 9
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.89 E-value=7.2e-23 Score=118.83 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.4
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|+|+..+|+.+.+++++++||++||++|++..++|++.|+|+|+|+.|.|+.+|++|+|++|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.7e-23 Score=125.31 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=75.7
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|.|+.+|++|+|++|++|++++|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.89 E-value=1.1e-22 Score=118.00 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.2
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++|+|++|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 12
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=1e-22 Score=121.37 Aligned_cols=81 Identities=33% Similarity=0.507 Sum_probs=77.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..+.|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+|+|+|+.|.|+.+|++|+|+++++|++++|++||
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 038333 119 E 119 (120)
Q Consensus 119 ~ 119 (120)
+
T Consensus 84 ~ 84 (87)
T 1wh3_A 84 P 84 (87)
T ss_dssp S
T ss_pred C
Confidence 6
No 13
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=121.48 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=71.8
Q ss_pred cccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCC
Q 038333 27 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 106 (120)
Q Consensus 27 i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g 106 (120)
..+++.++++.+.++.|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 45678888898888999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CEEEEEEE
Q 038333 107 STLHLVLR 114 (120)
Q Consensus 107 ~~i~v~~~ 114 (120)
++|+++.|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999875
No 14
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=1.2e-22 Score=121.68 Aligned_cols=79 Identities=85% Similarity=1.243 Sum_probs=70.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
..|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++|+|++|++|++++|++||+
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999999999996
No 15
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.88 E-value=2.6e-22 Score=121.72 Aligned_cols=77 Identities=94% Similarity=1.259 Sum_probs=73.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|.|+.+|++|+|++|++|++++|++||.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999984
No 16
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=125.13 Aligned_cols=93 Identities=80% Similarity=1.042 Sum_probs=84.1
Q ss_pred ccccCCeEEEEeec--------CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCc
Q 038333 26 NIQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 97 (120)
Q Consensus 26 ~i~~~s~i~~~~~~--------~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~ 97 (120)
.+.+++++++...+ ...|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t 90 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 90 (111)
T ss_dssp SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence 35566777776554 2579999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEEEEcCCC
Q 038333 98 LADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 98 L~~~~i~~g~~i~v~~~~~gG 118 (120)
|++|+|++|++|++++|++||
T Consensus 91 L~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 91 LSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTTCCTTCEEEEEECCCC-
T ss_pred HHHcCCCCCCEEEEEEeCCCC
Confidence 999999999999999999998
No 17
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.88 E-value=1.8e-22 Score=118.38 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=74.4
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.|+|+|+..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+.+|++|+|++|++|+++++++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
No 18
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.88 E-value=6.5e-22 Score=123.15 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.2
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..|+|+|+..+|+.+.+++++++||.+||.+|++.+++|++.|+|+|+|+.|.|+.+|++|+|++|++|++++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 19
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=120.70 Aligned_cols=79 Identities=35% Similarity=0.571 Sum_probs=72.0
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
.+|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|++|++|+++.+++||+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999999985
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=9.2e-22 Score=117.73 Aligned_cols=80 Identities=36% Similarity=0.622 Sum_probs=76.1
Q ss_pred CCCEEEEEEeCCC-CEEEE-EEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 40 RGGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 40 ~~~m~i~v~~~~g-~~~~i-~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
...|+|+|+..+| +.+.+ ++++++||.+||++|++..++|+++|+|+|+|+.|.|+.+|++|+|++|++|+++++++|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 3679999999999 69999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 038333 118 GE 119 (120)
Q Consensus 118 G~ 119 (120)
|.
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 84
No 21
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.87 E-value=9.2e-22 Score=118.35 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=74.1
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
...|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|.|+.+|++|||++|++|++++|++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999875
No 22
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.87 E-value=8e-22 Score=119.41 Aligned_cols=79 Identities=27% Similarity=0.421 Sum_probs=75.4
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCC-CccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~-~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...|+|+|+..++ .+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+ .+|++|+|++|++|++++|++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 4679999999887 899999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred C
Q 038333 119 E 119 (120)
Q Consensus 119 ~ 119 (120)
+
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 23
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.87 E-value=1e-21 Score=117.65 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=70.2
Q ss_pred ecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 38 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 38 ~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
..++.|+|+|+.++|++..++++|++||++||++|+++.|+|++.|+|.|+|+.|.|..+|++|+|++|++|++.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 345779999999999999999999999999999999999999999999999999999999999999999999885
No 24
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.87 E-value=5.9e-22 Score=120.62 Aligned_cols=80 Identities=18% Similarity=0.390 Sum_probs=76.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
....|+|+|+..+|+.+.++|.+++||.+||++|++..|+|++.|+|+|+|+.|.|+.+|++|+|++|++|+++++++||
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999998
No 25
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=119.65 Aligned_cols=78 Identities=37% Similarity=0.629 Sum_probs=72.2
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+...|+|+|+. |+.+.+++++++||++||++|++..++|+++|+|+|+|+.|.|+.+|++|+|++|++|++++|++||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 34569999997 7899999999999999999999999999999999999999999999999999999999999999998
No 26
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.86 E-value=2.4e-21 Score=118.02 Aligned_cols=77 Identities=95% Similarity=1.307 Sum_probs=74.1
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|||++|++|++..+++||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999883
No 27
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.86 E-value=2.7e-21 Score=115.97 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=73.9
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+.+|+|+|+..+|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|.|+.+|.+|+| +|++|+++.+.+++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999 89999999998765
No 28
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.86 E-value=1.8e-21 Score=121.10 Aligned_cols=81 Identities=32% Similarity=0.446 Sum_probs=77.1
Q ss_pred cCCCEEEEEEeC---CCCEEEEEEcC-CCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 39 LRGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 39 ~~~~m~i~v~~~---~g~~~~i~v~~-~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
..++|+|+|+.+ +|+.+.+++++ ++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++|+|++|++|+++++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 456799999998 88899999998 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 038333 115 LRGGE 119 (120)
Q Consensus 115 ~~gG~ 119 (120)
++||+
T Consensus 104 ~~GGk 108 (111)
T 1we6_A 104 ERSGP 108 (111)
T ss_dssp SCCSS
T ss_pred cCCCC
Confidence 99996
No 29
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=8.4e-21 Score=110.88 Aligned_cols=76 Identities=36% Similarity=0.648 Sum_probs=71.3
Q ss_pred CCEEEEEEeCCCCEE-EEE-EcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 41 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~-~i~-v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
+.|+|+|+..+|+.+ .++ +++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|++|++|++++|++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 369999999999874 899 9999999999999999999999999999999999999999999999999999998863
No 30
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=112.10 Aligned_cols=77 Identities=39% Similarity=0.674 Sum_probs=73.3
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
.+.|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|||++|++|++++|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998864
No 31
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.85 E-value=6.7e-21 Score=128.17 Aligned_cols=89 Identities=83% Similarity=1.078 Sum_probs=81.0
Q ss_pred CeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEE
Q 038333 31 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 110 (120)
Q Consensus 31 s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~ 110 (120)
+.........-.|+|+|+..+|+++.+++++++||++||++|++..++|++.|+|+|+|+.|.|+.+|++|+|++|++|+
T Consensus 94 dg~~y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~ 173 (189)
T 3q3f_A 94 DWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 173 (189)
T ss_dssp TCCEEEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEE
T ss_pred CCcEEEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 33333334456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 038333 111 LVLRLRGGE 119 (120)
Q Consensus 111 v~~~~~gG~ 119 (120)
++++++||+
T Consensus 174 LvlrlrGG~ 182 (189)
T 3q3f_A 174 LVLRLRGGG 182 (189)
T ss_dssp ECCCCCCCC
T ss_pred EEEEcCCCC
Confidence 999999985
No 32
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.85 E-value=5.5e-21 Score=113.49 Aligned_cols=76 Identities=32% Similarity=0.453 Sum_probs=72.4
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEE-cCCCCccccCCCCCCCEEEEEEEc
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~-L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
.+.|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+. |.|+.+|++|+|++|++|++++++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 3579999999999999999999999999999999999999999999999999 999999999999999999998763
No 33
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=3.8e-21 Score=116.07 Aligned_cols=80 Identities=29% Similarity=0.484 Sum_probs=74.3
Q ss_pred CCCEEEEEEeCCCC--EEEEEEcCCCCHHHHHHHHHhhc--CCCCCceEEEeCCEEcCCCCccccC--CCCCCCEEEEEE
Q 038333 40 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVL 113 (120)
Q Consensus 40 ~~~m~i~v~~~~g~--~~~i~v~~~~tV~~LK~~i~~~~--~~~~~~~~L~~~g~~L~d~~~L~~~--~i~~g~~i~v~~ 113 (120)
...|+|+|+..+++ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|.|+.+|++| +|+++++|++++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45799999999888 56677779999999999999999 9999999999999999999999999 999999999999
Q ss_pred EcCCCC
Q 038333 114 RLRGGE 119 (120)
Q Consensus 114 ~~~gG~ 119 (120)
+++||+
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 999985
No 34
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.85 E-value=8.3e-21 Score=126.02 Aligned_cols=77 Identities=96% Similarity=1.312 Sum_probs=73.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|++|++|++++|++||+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999985
No 35
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.4e-20 Score=116.55 Aligned_cols=80 Identities=89% Similarity=1.253 Sum_probs=76.9
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
.+..+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|++|++|+++.+++||.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999984
No 36
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=2e-20 Score=114.38 Aligned_cols=79 Identities=33% Similarity=0.418 Sum_probs=74.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
....|+|+|+..+|+ +.+++++++||++||++|++..++|+++|+|+|+|+.|.|+.+|++|+|++|++|++++++++|
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 346699999999886 7999999999999999999999999999999999999999999999999999999999999887
No 37
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=8.2e-21 Score=115.17 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=75.3
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
...|+|+|+.. |+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|.|+.+|.+|+|++|++|+++++++||.
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 45699999988 88999999999999999999999999999999999999999999999999999999999999999884
No 38
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.83 E-value=2.2e-20 Score=116.88 Aligned_cols=80 Identities=29% Similarity=0.578 Sum_probs=74.3
Q ss_pred CCCEEEEEEeCC----------CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEE
Q 038333 40 RGGMQIFVKTLT----------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 109 (120)
Q Consensus 40 ~~~m~i~v~~~~----------g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i 109 (120)
.++++|.|+.++ |+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|++|++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 456788887764 6789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCC
Q 038333 110 HLVLRLRGGE 119 (120)
Q Consensus 110 ~v~~~~~gG~ 119 (120)
++++|++||+
T Consensus 103 ~lv~rl~GGk 112 (115)
T 1we7_A 103 HLALKERSGP 112 (115)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999999995
No 39
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.83 E-value=6.9e-20 Score=108.55 Aligned_cols=77 Identities=29% Similarity=0.494 Sum_probs=71.1
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhh---cCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~---~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
+..|+|+|+..+|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|.|+.+|++|+|++|++|+++.+..
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 357999999999999999999999999999999998 88999999999999999999999999999999999988743
No 40
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=5.5e-20 Score=111.43 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=71.1
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhh---cCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~---~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
|+|+|+..+|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|.|+.+|++|||++|++|+++++...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 789999999999999999999999999999999999987553
No 41
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.73 E-value=2.7e-22 Score=116.69 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.7
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
|+|+|+..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+.+|++|||++|++|++++|++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999986
No 42
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=7.1e-20 Score=116.09 Aligned_cols=79 Identities=29% Similarity=0.355 Sum_probs=71.3
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
...|+|+|+.. |+.+.+++++++||.+||.+|++.+++|+++|+|+|+|+.|.|+.+|.+|+|++|++|+++.+++||+
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 45799999998 88999999999999999999999999999999999999999999999999999999999999999884
No 43
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=2.4e-20 Score=113.47 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=68.7
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
.|+|+|+.++|+.+.++|++++||++||++|++..|+|+++|+|+|.|+.|.|+.+|.+|+|+++++|++.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999875
No 44
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=5.4e-20 Score=113.53 Aligned_cols=79 Identities=33% Similarity=0.427 Sum_probs=74.3
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
...|+|+|+..+++ +.+++++++||.+||++|++.+++|+++|+|+|+|+.|.|+.+|.+|+|++|++|++++++++|.
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 45699999998876 78999999999999999999999999999999999999999999999999999999999999874
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=110.46 Aligned_cols=82 Identities=29% Similarity=0.358 Sum_probs=73.3
Q ss_pred EEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 35 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 35 ~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
...+....|+|+|+.. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|||++|++|+++.+
T Consensus 18 ~~~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 18 YFQGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp -----CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred ccCCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 3444567899999988 788999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 038333 115 LRG 117 (120)
Q Consensus 115 ~~g 117 (120)
++.
T Consensus 97 ~~~ 99 (101)
T 2klc_A 97 TQN 99 (101)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 46
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.82 E-value=6.1e-22 Score=126.11 Aligned_cols=78 Identities=95% Similarity=1.292 Sum_probs=1.0
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 120 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~~ 120 (120)
|+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++++||..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~ 78 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII 78 (128)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999963
No 47
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.82 E-value=1.2e-19 Score=110.48 Aligned_cols=77 Identities=19% Similarity=0.390 Sum_probs=69.8
Q ss_pred cCCCEEEEEEeCCCCEEEE--EEcCCCCHHHHHHHH-HhhcCCCCCceEEEeCCEEcCCCCccccCCC-CCCCEEEEEEE
Q 038333 39 LRGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 114 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i--~v~~~~tV~~LK~~i-~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i-~~g~~i~v~~~ 114 (120)
..++|+|+|++.+|+.+.+ ++++++||++||++| ++..|+|+++|+|+|+|+.|.|+.+|++|+| ++|++|+++++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 3577999999999997776 566999999999999 8888999999999999999999999999999 99999999986
Q ss_pred c
Q 038333 115 L 115 (120)
Q Consensus 115 ~ 115 (120)
.
T Consensus 96 k 96 (98)
T 4a20_A 96 P 96 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.82 E-value=1.6e-19 Score=104.94 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.5
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
|+|+|+. +|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|||++|++|++..+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 8899998 88999999999999999999999999999999999999999999999999999999999987653
No 49
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.5e-20 Score=113.95 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|.|+.+|++|||++|++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998743
No 50
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=1e-19 Score=112.29 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=74.8
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...|+|+|+..+|+.+.+++++++||++||.+|++..|+|+++|+|+|+|+.|.|+.+|++|||++|++|+++.+...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999987654
No 51
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.81 E-value=5.1e-20 Score=114.99 Aligned_cols=77 Identities=29% Similarity=0.449 Sum_probs=69.0
Q ss_pred EEEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCC-------CCCEEEEEEE
Q 038333 43 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 114 (120)
Q Consensus 43 m~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~-------~g~~i~v~~~ 114 (120)
|.++++.+.++ ++.+++.+++||++||++|+...|+|++.|+|+|+|+.|.|+++|++|||+ .+++|++.+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 44555555555 588999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCCCC
Q 038333 115 LRGGEF 120 (120)
Q Consensus 115 ~~gG~~ 120 (120)
.||.|
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 78876
No 52
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=8.2e-20 Score=112.02 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=72.5
Q ss_pred CCEEEEEEeCCC----CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCC-CccccCCCCCCCEEEEEEEc
Q 038333 41 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 41 ~~m~i~v~~~~g----~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~-~~L~~~~i~~g~~i~v~~~~ 115 (120)
..|+|+|+...+ +.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+ .+|++|+|++|++|+++.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 459999998644 7899999999999999999999999999999999999999877 79999999999999999999
Q ss_pred CCC
Q 038333 116 RGG 118 (120)
Q Consensus 116 ~gG 118 (120)
+||
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 887
No 53
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=119.20 Aligned_cols=80 Identities=91% Similarity=1.239 Sum_probs=75.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...+|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998876
No 54
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.2e-19 Score=110.43 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=66.8
Q ss_pred EEEEEeCC----CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 44 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 44 ~i~v~~~~----g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+|.|+.++ ++.+.++|++++||++||++|++..|+|++.|+|+|+|+.|.|+.||++|+|++|++| ++++++|.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 45555555 6789999999999999999999999999999999999999999999999999999999 77777764
No 55
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.81 E-value=1.7e-21 Score=127.15 Aligned_cols=77 Identities=96% Similarity=1.312 Sum_probs=0.0
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|++|++|+++++++||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999984
No 56
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.3e-20 Score=109.47 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.8
Q ss_pred EEEEEEeCCCCEEEEEEc--CCCCHHHHHHHH-HhhcCCCCCceEEEeCCEEcCCCCccccCCC-CCCCEEEEEEEc
Q 038333 43 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 115 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~--~~~tV~~LK~~i-~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i-~~g~~i~v~~~~ 115 (120)
|+|+|++.+|+++.++++ +++||.+||++| ++..|+|+++|+|+|+|+.|.|+.+|++|+| ++|++|+++.+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999998888766 999999999999 9999999999999999999999999999999 799999998874
No 57
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.4e-20 Score=114.27 Aligned_cols=93 Identities=30% Similarity=0.509 Sum_probs=67.4
Q ss_pred CCCccccccccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCcc
Q 038333 19 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 98 (120)
Q Consensus 19 ~~~l~~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L 98 (120)
+...++|.|..-..+.+ ...-.|+|+|++ +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|
T Consensus 7 ~~~~~~~~~~~t~~l~l--~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDIPTTENLYF--QGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCCCcceeecc--cCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 45677888876555554 344457888886 888899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEEEE
Q 038333 99 ADYNIQKESTLHLVLR 114 (120)
Q Consensus 99 ~~~~i~~g~~i~v~~~ 114 (120)
++|||++|++|+++.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998765
No 58
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=9.5e-20 Score=111.99 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=71.9
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC---------------ceEEEeCCEEcC-CCCccccCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQ 104 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~---------------~~~L~~~g~~L~-d~~~L~~~~i~ 104 (120)
..|+|+|+..+|+.+.++|.+++||++||++|++..++|+. .|+|+|+|+.|. |+.+|.+|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 46999999999999999999999999999999999998774 569999999996 67999999999
Q ss_pred CCCEEEEEEEcCCC
Q 038333 105 KESTLHLVLRLRGG 118 (120)
Q Consensus 105 ~g~~i~v~~~~~gG 118 (120)
+|++|+++.+++|.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999999864
No 59
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.79 E-value=4.2e-19 Score=110.53 Aligned_cols=77 Identities=30% Similarity=0.458 Sum_probs=69.1
Q ss_pred EEEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCC-------CCEEEEEEE
Q 038333 43 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 114 (120)
Q Consensus 43 m~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~-------g~~i~v~~~ 114 (120)
|.++++.+.++ +..+++.+++||.+||++|+...|+|++.|||+|+|+.|+|++||++|||++ +++|++++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 44555555555 7788999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCCCC
Q 038333 115 LRGGEF 120 (120)
Q Consensus 115 ~~gG~~ 120 (120)
. +|.|
T Consensus 81 ~-~~~f 85 (118)
T 4ajy_B 81 A-DDTF 85 (118)
T ss_dssp C-SSCC
T ss_pred c-CCCc
Confidence 7 6766
No 60
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.78 E-value=1.9e-18 Score=108.97 Aligned_cols=81 Identities=26% Similarity=0.429 Sum_probs=72.5
Q ss_pred cCCCEEEEEEeCCCCEE-EEEEcCCCCHHHHHHHHHh-----hcCCCC--CceEEEeCCEEcCCCCccccCCCCCC----
Q 038333 39 LRGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQD-----KEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE---- 106 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~-~i~v~~~~tV~~LK~~i~~-----~~~~~~--~~~~L~~~g~~L~d~~~L~~~~i~~g---- 106 (120)
..+.|+|+++..+|+.+ .+++++++||++||++|++ ..++|+ +.|+|+|.|+.|.|+.||++|+|+.|
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccC
Confidence 34789999999999888 7999999999999999965 446776 89999999999999999999999998
Q ss_pred --CEEEEEEEcCCCC
Q 038333 107 --STLHLVLRLRGGE 119 (120)
Q Consensus 107 --~~i~v~~~~~gG~ 119 (120)
++++++++++||.
T Consensus 93 ~v~tmhlVlrl~g~~ 107 (126)
T 1se9_A 93 AVTTMHVIIQAPVTE 107 (126)
T ss_dssp CCEEEEEEECCCSSC
T ss_pred CcEEEEEEeccCCcc
Confidence 6899999999874
No 61
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.77 E-value=2.5e-18 Score=111.52 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.0
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|+|+|+.++|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++|+|++|++|+++.+..+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987765
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.77 E-value=2.4e-18 Score=112.77 Aligned_cols=75 Identities=32% Similarity=0.411 Sum_probs=71.6
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-e-CCEEcCCCCccccCCCCCCCEEEEEEE-cCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRG 117 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~-~g~~L~d~~~L~~~~i~~g~~i~v~~~-~~g 117 (120)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+ | +|+.|.|+.+|++|+|++|++|+++++ +++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~ 80 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE 80 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999998 344
No 63
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=8.8e-18 Score=104.90 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=69.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhh------cCC--CCCceEEEeCCEEcCCCCccccCCCCCC--CE
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK------EGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--ST 108 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~------~~~--~~~~~~L~~~g~~L~d~~~L~~~~i~~g--~~ 108 (120)
+...|+|+|+..+|+++.+++++++||++||++|++. .++ |++.|+|+|.|+.|.|+.+|++|+|+.+ .+
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 4567999999999999999999999999999999994 464 6999999999999999999999999877 46
Q ss_pred EEEEEEcCC
Q 038333 109 LHLVLRLRG 117 (120)
Q Consensus 109 i~v~~~~~g 117 (120)
|++++|+..
T Consensus 93 lhLvlr~~~ 101 (116)
T 1wgh_A 93 MHLVARETL 101 (116)
T ss_dssp EEEEECSSC
T ss_pred EEEEccCCC
Confidence 777777654
No 64
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=107.68 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=71.1
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHh------hcCC--CCCceEEEeCCEEcCCCCccccCCCCCCC--EE
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TL 109 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~------~~~~--~~~~~~L~~~g~~L~d~~~L~~~~i~~g~--~i 109 (120)
...|.|+|+..+|+++.+++++++||++||++|++ ..++ +++.|+|+|.|+.|.|+.+|++|+|+.++ +|
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34599999999999999999999999999999999 5576 48999999999999999999999999777 68
Q ss_pred EEEEEcCCC
Q 038333 110 HLVLRLRGG 118 (120)
Q Consensus 110 ~v~~~~~gG 118 (120)
++++|++++
T Consensus 95 hlv~r~~~~ 103 (125)
T 2gow_A 95 HLVARETLP 103 (125)
T ss_dssp EEEECSCCS
T ss_pred EEEecCCCC
Confidence 888888765
No 65
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=9.2e-18 Score=99.68 Aligned_cols=73 Identities=30% Similarity=0.489 Sum_probs=65.6
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+++.+.++ .+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|++|++|+++.+
T Consensus 11 ~~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 11 STIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CcEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 34444444 67889999999999999999999999999999999999999999999999999999999988754
No 66
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=8e-18 Score=101.75 Aligned_cols=75 Identities=27% Similarity=0.404 Sum_probs=69.9
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCC-CccccCCCCCCCEEEEEEEcCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~-~~L~~~~i~~g~~i~v~~~~~g 117 (120)
...|+|+|+..+|+.+.+++++++||.+||++|++.. +++|+|+|+|+.|.|+ .+|++|+|++|++|+++.+.++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 3579999999999999999999999999999999997 8999999999999998 9999999999999999988654
No 67
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=103.67 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=70.3
Q ss_pred CCCEEEEEE-eCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 40 RGGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 40 ~~~m~i~v~-~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
.+.++|.|+ .++++.+.+.++++.||.+||+.+++..++|++.|+|+|+|+.|.|+.||.+|||++|.+|++.++-
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 345778877 6678899999999999999999999999999999999999999999999999999999999999874
No 68
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.75 E-value=3.1e-18 Score=102.75 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=69.3
Q ss_pred CCCEEEEEEeCCCCEEEE-EEcCCCCHHHHHHHHHhhcCCCCCceEEE---eCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 40 RGGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i-~v~~~~tV~~LK~~i~~~~~~~~~~~~L~---~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
...|+|+|+. +|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|.|+.+|++|+|++|++|+++...
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 3569999996 6788999 99999999999999999999999999999 99999999999999999999999988653
No 69
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=4.1e-18 Score=103.37 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=67.0
Q ss_pred CCEEEEEEeCCCCEE-EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 41 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~-~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
..|+|+|+. .|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|.|+ +|++|+|++|++|+++..
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 468999995 67889 6999999999999999999999999999999999999999 999999999999998765
No 70
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.75 E-value=1.9e-17 Score=101.41 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=66.5
Q ss_pred EEEEEEeCCC--CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCC-CCCCEEEEEEE
Q 038333 43 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 114 (120)
Q Consensus 43 m~i~v~~~~g--~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i-~~g~~i~v~~~ 114 (120)
|+|+|+...+ ..+.+++.+++||++||++|++++|+|++.|||+++|+.++|+.+|.+||| ++|+++++.+.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 7788888764 588899999999999999999999999999999999999999999999999 69999999864
No 71
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=103.61 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=64.6
Q ss_pred CCCEEEEEEeCCCC--EEEEEEcCCCCHHHHHHHHHhhc-CCC-CCceEEEeCCEEcCCCCccccC--CCCCCCEEEEE
Q 038333 40 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 112 (120)
Q Consensus 40 ~~~m~i~v~~~~g~--~~~i~v~~~~tV~~LK~~i~~~~-~~~-~~~~~L~~~g~~L~d~~~L~~~--~i~~g~~i~v~ 112 (120)
...|+|+|+..+++ .+.+++++++||++||++|++.+ |.| ++.|||+|.|+.|.|+.+|++| +|+++++|+++
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 35699999999887 67889999999999999999964 555 5999999999999999999999 99999999873
No 72
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.5e-17 Score=99.97 Aligned_cols=75 Identities=24% Similarity=0.446 Sum_probs=68.3
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCC-----CCHHHHHHHHHhhcCCCCCceEEEeCCEEcCC-CCccccCCCCCCCEEEEEE
Q 038333 40 RGGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~-----~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d-~~~L~~~~i~~g~~i~v~~ 113 (120)
...|+|+|+. .++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|.+|+|++|++|+++.
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 3579999997 478899999996 99999999999999999999999999999988 6689999999999999987
Q ss_pred Ec
Q 038333 114 RL 115 (120)
Q Consensus 114 ~~ 115 (120)
+.
T Consensus 84 ~~ 85 (92)
T 1wxv_A 84 KK 85 (92)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 73
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=8.4e-18 Score=103.84 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=69.8
Q ss_pred CCEEEEEEeCCC---CEEEEEEcC---------CCCHHHHHHHHHhhc--CCCCCc-eEEEeCCEEcCCCCccccCCCCC
Q 038333 41 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 105 (120)
Q Consensus 41 ~~m~i~v~~~~g---~~~~i~v~~---------~~tV~~LK~~i~~~~--~~~~~~-~~L~~~g~~L~d~~~L~~~~i~~ 105 (120)
..|+|+|+..++ +.+.+++++ ++||.+||++|++.. ++|+++ |+|+|+|+.|.|+.+|.+|+|++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 569999999988 788999554 599999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEEcC
Q 038333 106 ESTLHLVLRLR 116 (120)
Q Consensus 106 g~~i~v~~~~~ 116 (120)
|++|+++.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998754
No 74
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=4.1e-17 Score=98.55 Aligned_cols=80 Identities=16% Similarity=0.371 Sum_probs=76.3
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
...|+|.|+..+|+...++|.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+.+|++++||+|+++.+++||.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999985
No 75
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.73 E-value=4.4e-17 Score=116.58 Aligned_cols=78 Identities=92% Similarity=1.273 Sum_probs=72.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
....|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|+++++|++++|++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999999875
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=9.5e-18 Score=101.56 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=66.4
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
..|+|+|+ .+++.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+ +.+|.+|+|++|++|+++.+.
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence 56899999 46789999999999999999999999999999999999999995 459999999999999987653
No 77
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-16 Score=95.17 Aligned_cols=80 Identities=16% Similarity=0.371 Sum_probs=76.3
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
...|+|.|++.+|+...++|.+++++..|++.++++.|++++.++|+|+|+.|.++.|.+++++.+||+|.+..++.||.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999985
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.71 E-value=6.6e-17 Score=97.80 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=64.2
Q ss_pred CCCEEEEEEeCCCC--EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeC--CE---Ec-CCCCccccCCCCCCCEEEE
Q 038333 40 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 40 ~~~m~i~v~~~~g~--~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~--g~---~L-~d~~~L~~~~i~~g~~i~v 111 (120)
.+.++|.|++.+++ ...+++++++||++||++|+..+|+|++.|+|+|. |+ .| +|+++|++|+|++|++|++
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 45578888877664 78899999999999999999999999999999997 44 44 8999999999999999987
Q ss_pred E
Q 038333 112 V 112 (120)
Q Consensus 112 ~ 112 (120)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 5
No 79
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.70 E-value=1.3e-16 Score=94.92 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=62.0
Q ss_pred EEEEEe--CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe-------CCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 44 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 44 ~i~v~~--~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~-------~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
.|.|.+ .+.+..++++++++||++||++|+..+|+|++.|+|+| .|+.++|+++|++|+|++|++|+++-+
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 444443 34567889999999999999999999999999999997 477899999999999999999999855
Q ss_pred c
Q 038333 115 L 115 (120)
Q Consensus 115 ~ 115 (120)
-
T Consensus 84 ~ 84 (86)
T 4b6w_A 84 Q 84 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 80
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.68 E-value=2.2e-18 Score=115.52 Aligned_cols=72 Identities=29% Similarity=0.415 Sum_probs=0.5
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
|+|+|+.++|+++.++|++++||.+||.+|+...|+|++.|+|+|+|++|.|+.+|+ ++++|++++|++||+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 789999999999999999999999999999999999999999999999999999998 899999999999985
No 81
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.9e-17 Score=97.97 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=66.1
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe--CCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~--~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
.|.+++..++|+.+.+++++++||++||++|++.+|+|+++|+|++ .|+ |.|+.+|++|+|++|++++++.+..
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 4777776688999999999999999999999999999999999985 555 8999999999999999999977643
No 82
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.67 E-value=6.6e-16 Score=93.07 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=73.2
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...|.|.|+..+|+...++|.+++++..|++.++++.|++++.++|+|+|+.|.++.|..+|++.+||+|+++.+++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999997
No 83
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=95.40 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=63.4
Q ss_pred CEEEEEEeCCCCEE--EE-EEcCCCCHHHHHHHHHhh-cCCCCCceEEEeC--CEEcCCCCccccCCCCCCCEEEE
Q 038333 42 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 42 ~m~i~v~~~~g~~~--~i-~v~~~~tV~~LK~~i~~~-~~~~~~~~~L~~~--g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
.|+|+|+...|+.. .+ ++++++||++||++|++. .++|+++|+|.|. |+.|.|+.+|++|+|++|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 49999999987654 58 999999999999999994 8999999999976 89999999999999999999765
No 84
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.66 E-value=1.4e-16 Score=116.59 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=72.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHh---hcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEE-EEEEEcC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 116 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~---~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i-~v~~~~~ 116 (120)
..|+|+|+..+|+.+.++|++++||.+||++|+. ..|+|+++|+|+|+|+.|.|+++|.+|+|++|++| +++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 5699999999999999999999999999999999 56799999999999999999999999999999998 6677777
Q ss_pred CC
Q 038333 117 GG 118 (120)
Q Consensus 117 gG 118 (120)
+|
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 85
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=4.4e-16 Score=94.49 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=63.0
Q ss_pred CCEEEEEEeCCC--CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC---EE----cCCCCccccCCCCCCCEEEE
Q 038333 41 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 41 ~~m~i~v~~~~g--~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g---~~----L~d~~~L~~~~i~~g~~i~v 111 (120)
+.+.|.|++... +..++++++++||++||++|+..+|+|++.|+|+|.| +. ++|+++|++|+|++|++|++
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 456777776544 4688999999999999999999999999999999987 33 48899999999999999988
Q ss_pred EE
Q 038333 112 VL 113 (120)
Q Consensus 112 ~~ 113 (120)
+-
T Consensus 93 vd 94 (97)
T 2kj6_A 93 ID 94 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 86
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=9.3e-16 Score=94.08 Aligned_cols=80 Identities=15% Similarity=0.351 Sum_probs=76.8
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
...|+|.|+..+|+...++|.+++++..|+..++++.|++++.++|+|+|+.|.++.|..+|++.+||+|+++.++.||.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999995
No 87
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=8.8e-16 Score=92.81 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=63.1
Q ss_pred CEEEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC---EE----cCCCCccccCCCCCCCEEEEEE
Q 038333 42 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 42 ~m~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g---~~----L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
.+.|.|++.+.. .+.+++++++||++||++|+..+|+|+++|+|+|.| +. ++|+++|++|+|++|++|++.-
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 478888876553 688999999999999999999999999999999976 43 5799999999999999998863
No 88
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.64 E-value=3.6e-16 Score=96.51 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=65.9
Q ss_pred CCEEEEEEeCCCCEEEEEEc-CCCCHHHHHHHHHhhcCCCCCceEEEeCCE-----------E----cCCCCccccCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQ 104 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~-~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~-----------~----L~d~~~L~~~~i~ 104 (120)
+.|.|+|++++|+. .++++ +++||.+||++|++.+++|++.|+|.+.++ . ++|+.+|++|||+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 44999999999965 79999 999999999999999999999999998887 3 5789999999999
Q ss_pred CCCEEEEEEE
Q 038333 105 KESTLHLVLR 114 (120)
Q Consensus 105 ~g~~i~v~~~ 114 (120)
+|++|++...
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 9999988654
No 89
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.64 E-value=2.2e-15 Score=92.56 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=72.2
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...|+|.|+. +|+...++|.+++++..|++.++++.|++++.++|+|+|+.|.++.|..+|++.+||+|.+..++.||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3569999999 99999999999999999999999999999999999999999999999999999999999999999987
No 90
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.62 E-value=2.5e-15 Score=94.71 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=64.3
Q ss_pred CCEEEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC---E---E-cCCCCccccCCCCCCCEEEEE
Q 038333 41 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 41 ~~m~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g---~---~-L~d~~~L~~~~i~~g~~i~v~ 112 (120)
..|.|.|++.+.. ...+++++++||++||.+|+..+|+|++.|+|+|.| + . ++|+.+|++|||++|++|++.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4578888876553 688999999999999999999999999999999976 3 2 479999999999999999987
Q ss_pred EE
Q 038333 113 LR 114 (120)
Q Consensus 113 ~~ 114 (120)
-.
T Consensus 85 d~ 86 (122)
T 1t0y_A 85 DV 86 (122)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 91
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.60 E-value=2e-15 Score=93.33 Aligned_cols=80 Identities=15% Similarity=0.371 Sum_probs=76.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
....|+|.|+..+|+...++|.+++++..|++.++++.|++++.++|+|+|+.|.++.|..+|++.+||+|.++..+.||
T Consensus 23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999988
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.60 E-value=1.4e-14 Score=83.29 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.8
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
|+|.|++.+|+...+++.+++++..|++.++++.|++++.++|+|+|+.|.++.|.+++++.+||+|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.56 E-value=4.4e-14 Score=82.63 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=69.4
Q ss_pred CCCEEEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 40 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 40 ~~~m~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
...|+|.|+..+|+ ...+++.+++++..|++.++++.|++++.++|+|+|+.|.++.|..++++.+||+|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 46799999999996 89999999999999999999999999999999999999999999999999999999885
No 94
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.55 E-value=7.7e-15 Score=87.09 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=62.1
Q ss_pred EEEEEEeCCCCEEEEE-EcCCCCHHHHHHHHHhhcCCCCCceEEEeC--CEEcC---CCCccccCCCCCCCEEEEEEE
Q 038333 43 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~-v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~--g~~L~---d~~~L~~~~i~~g~~i~v~~~ 114 (120)
|+|.|+..+|+ ..+. +++++||++||++|++..|+|+++|+|.|+ ++.|. |+.+|++|||++|++|++.-.
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 67999999995 4577 999999999999999999999999999986 47764 688999999999999987643
No 95
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.55 E-value=8.7e-15 Score=105.57 Aligned_cols=74 Identities=22% Similarity=0.424 Sum_probs=66.8
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE---eCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~---~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
+.|+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+ |+|+.|.|+.+|++|+|++|++|+++...
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 568899995 788999999999999999999999999999999999 89999999999999999999999987553
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=2.6e-13 Score=82.14 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=62.4
Q ss_pred CEEEEEEe---CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC-------EEc-CCCCccccCCCCCCCEEE
Q 038333 42 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLH 110 (120)
Q Consensus 42 ~m~i~v~~---~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g-------~~L-~d~~~L~~~~i~~g~~i~ 110 (120)
.++|.|+. .+++....++++++||++||.+|++.+|+|+..|+|.|.+ ..| +|..+|++|++.+|++|+
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 46676765 3677889999999999999999999999999999999762 235 578999999999999999
Q ss_pred EEEE
Q 038333 111 LVLR 114 (120)
Q Consensus 111 v~~~ 114 (120)
|...
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 8764
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=1.5e-12 Score=80.76 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=73.1
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
...|+|.|+..+|+...++|.+++++..|+...+++.|++++.++|+|+|+.|.++.|..++++.+||+|.+..+..|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999988764
No 98
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.6e-12 Score=86.77 Aligned_cols=79 Identities=11% Similarity=0.265 Sum_probs=74.5
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
...|.|.|+ .+|+...++|.+++++..|++..+++.|++++.+++.|+|+.|.++.|..++++.+||+|.++.++.||.
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 455888887 5889999999999999999999999999999999999999999999999999999999999999999995
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.38 E-value=5e-12 Score=85.39 Aligned_cols=80 Identities=13% Similarity=0.280 Sum_probs=75.0
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+...|+|.|+ .+|+...++|.+++++..|++..+++.|++++.+|+.|+|+.+.++.|..++++.+||+|.+..++.||
T Consensus 26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 3456889997 488999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 038333 119 E 119 (120)
Q Consensus 119 ~ 119 (120)
.
T Consensus 105 ~ 105 (200)
T 3pge_A 105 G 105 (200)
T ss_dssp C
T ss_pred c
Confidence 4
No 100
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.30 E-value=5.9e-11 Score=68.00 Aligned_cols=72 Identities=15% Similarity=0.298 Sum_probs=66.2
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC-ceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~-~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
-+++.+++.....+.++++++++|.+|-+..+.+.++|++ .++|.|.|..|+++.++++|++.+||.|.+++
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3566777777778999999999999999999999999999 99999999999999999999999999999875
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.23 E-value=1e-12 Score=88.75 Aligned_cols=82 Identities=12% Similarity=0.273 Sum_probs=1.9
Q ss_pred ecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 38 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 38 ~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
.+...|.|.| ..+|+...++|.+++++..|++..+++.|++++.+++.|+|+.+.++.|..++++.+||+|.++..+.|
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 3456788999 678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 038333 118 GEF 120 (120)
Q Consensus 118 G~~ 120 (120)
|.+
T Consensus 96 G~~ 98 (227)
T 3v7o_A 96 GLT 98 (227)
T ss_dssp CCC
T ss_pred Cch
Confidence 963
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.15 E-value=2.2e-11 Score=71.20 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=60.0
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEE---c--CCCCccccCCCCCCCEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~---L--~d~~~L~~~~i~~g~~i~v~ 112 (120)
.+|.|.|++++| .+.+++++++|+.+|+++|++.++++++.+.+.++..+ | .++.+|+++||++||+|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 458899999988 67889999999999999999999999888877654433 3 37789999999999999875
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.10 E-value=1e-09 Score=66.18 Aligned_cols=74 Identities=12% Similarity=0.264 Sum_probs=68.8
Q ss_pred cCCCEEEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEE
Q 038333 39 LRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
....+.|.|+..+|+ ...+.+.+++++..|....+++.|++++.+++.|+|..+.++.|..++++.+||+|.+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 346689999999884 88999999999999999999999999999999999999999999999999999999875
No 104
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.5e-12 Score=81.07 Aligned_cols=65 Identities=68% Similarity=0.953 Sum_probs=50.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCCEEEEEEe---CCCCEEEEEEcCCCCH
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT---LTGKTITLEVESSDTI 65 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m~i~v~~---~~g~~~~i~v~~~~tV 65 (120)
|+|+++|+|+|+|++|+|+.+|++|++..++++++..+..+.+.+.++. ..|+++.+++.++.||
T Consensus 44 gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~~~~~~~~~g~~~~~~v~~~~~~ 111 (114)
T 2kdi_A 44 GIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESRNS 111 (114)
T ss_dssp CCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCSSCSSSHHHHHHHHSSSHHHHHG
T ss_pred CcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceeeccccccccCceEEEEecccccc
Confidence 6899999999999999999999999999999999999887666665552 2244444444444443
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.97 E-value=5.1e-09 Score=71.32 Aligned_cols=82 Identities=12% Similarity=0.312 Sum_probs=74.4
Q ss_pred eecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcC
Q 038333 37 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 37 ~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~ 116 (120)
..+...+.|.|+. +++...+++..++++..|++..+++.|++++.+++.|.|+.+.++.+..++.+.++|.|.+..++.
T Consensus 16 ~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp --CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred eCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence 3445678888886 677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 038333 117 GGE 119 (120)
Q Consensus 117 gG~ 119 (120)
||.
T Consensus 95 Gg~ 97 (209)
T 3uf8_A 95 GGS 97 (209)
T ss_dssp TCC
T ss_pred ccc
Confidence 874
No 106
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.93 E-value=1.4e-09 Score=65.48 Aligned_cols=54 Identities=76% Similarity=1.095 Sum_probs=40.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCCEEEEEEeCCCCE
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 54 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~ 54 (120)
|+|+++|+|+|+|++|+|+.++.+|++..++++++..+..+..++..+..+|+.
T Consensus 35 gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~~v~~~~ 88 (98)
T 1yx5_B 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSSSVDKLA 88 (98)
T ss_dssp CCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC------------
T ss_pred CcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccccCCCch
Confidence 689999999999999999999999999999999999998877888887776653
No 107
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.93 E-value=1.5e-09 Score=62.79 Aligned_cols=40 Identities=43% Similarity=0.647 Sum_probs=37.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++.++..
T Consensus 39 gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 39 GVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp TCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred CCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999998653
No 108
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.87 E-value=2.1e-10 Score=83.44 Aligned_cols=83 Identities=12% Similarity=0.290 Sum_probs=0.0
Q ss_pred EEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 35 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 35 ~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
-...+...++|.|+. +|+...++|.+++++..|++..+++.|++++.+++.|+|+.+.++.|.+++++++||+|.+..+
T Consensus 14 ~~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 14 PEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 344456678888886 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 038333 115 LRGG 118 (120)
Q Consensus 115 ~~gG 118 (120)
+.||
T Consensus 93 Q~g~ 96 (360)
T 3ix6_A 93 QIGG 96 (360)
T ss_dssp ----
T ss_pred cCch
Confidence 9998
No 109
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=3e-09 Score=61.27 Aligned_cols=39 Identities=44% Similarity=0.801 Sum_probs=36.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|++|+|+.++++|++..++++++.+++
T Consensus 39 gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 39 HVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 689999999999999999999999999999999998764
No 110
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.87 E-value=3e-08 Score=59.06 Aligned_cols=74 Identities=14% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
...+.|.|+ .+|....+.+..++....|.+..+++.|++++.+++.|.|..+.++.|-.++++.+||.|.+++-
T Consensus 19 ~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 19 PRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 345888888 46889999999999999999999999999999999999999999999999999999999998764
No 111
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.7e-09 Score=64.07 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=37.6
Q ss_pred CCCCCceEEEEccEEcCCCCCcccccc-ccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i-~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++++|++ ..++++.+..++.
T Consensus 39 gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 39 ASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred CCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 689999999999999999999999999 6999999998775
No 112
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.86 E-value=2.3e-09 Score=66.57 Aligned_cols=40 Identities=35% Similarity=0.579 Sum_probs=37.7
Q ss_pred CCCCCceEEEEccEEcCCCCCcccccccc-------CCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~-------~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|++||++|+|.+ ++++++.++..
T Consensus 36 giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~~ 82 (118)
T 4ajy_B 36 KRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAD 82 (118)
T ss_dssp CCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECCS
T ss_pred CCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEecC
Confidence 68999999999999999999999999999 99999998754
No 113
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.85 E-value=2.1e-09 Score=63.22 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=36.7
Q ss_pred CCCCCceEEEEccEE-cCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~-L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|++ |+|+.++++|++..++++++.+++
T Consensus 45 gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 45 HIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp TCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 689999999999999 999999999999999999998754
No 114
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.84 E-value=4.6e-09 Score=61.40 Aligned_cols=40 Identities=30% Similarity=0.546 Sum_probs=36.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|++|++..++++++..+..
T Consensus 43 gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 43 AFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp TCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 5899999999999999999999999999999999988654
No 115
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.83 E-value=4e-09 Score=62.39 Aligned_cols=41 Identities=66% Similarity=1.053 Sum_probs=38.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 41 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~ 41 (120)
|+|+++|+|+|+|+.|+|+.++++|++.+++++++.++..+
T Consensus 35 gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 35 GIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 68999999999999999999999999999999999987653
No 116
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.82 E-value=4.6e-09 Score=63.49 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCcccccc-ccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i-~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.+|++|+| ..+++++++++.+
T Consensus 57 gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvskp 97 (98)
T 4a20_A 57 ASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 97 (98)
T ss_dssp CSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECCC
T ss_pred CCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeCC
Confidence 689999999999999999999999999 9999999998653
No 117
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.81 E-value=6.4e-09 Score=62.02 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=35.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|+++|+|.|+|++|+|+.||++|+|..++++++-.
T Consensus 56 Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 56 GTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp TCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 7999999999999999999999999999999999864
No 118
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.80 E-value=4.1e-09 Score=60.90 Aligned_cols=40 Identities=20% Similarity=0.531 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.|+++|++..++++++.++..
T Consensus 38 gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 38 GVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp TCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred CCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 6899999999999999999999999999999999987654
No 119
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.79 E-value=8.2e-09 Score=60.22 Aligned_cols=40 Identities=80% Similarity=1.250 Sum_probs=37.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
++|+++|+|+|+|++|+|+.++.+|++.+++++++.++..
T Consensus 38 ~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 38 GIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp CCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 6899999999999999999999999999999999998754
No 120
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.78 E-value=7.4e-09 Score=61.51 Aligned_cols=39 Identities=97% Similarity=1.419 Sum_probs=36.7
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|+.|+|+.++.+|++..++++++.++.
T Consensus 52 gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 52 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 689999999999999999999999999999999998754
No 121
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.78 E-value=4.7e-09 Score=63.59 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=34.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|+++|+|.|+|++|+|+.||.+|+|.+++++.++.
T Consensus 54 gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 54 GLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp TCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred CcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 6899999999999999999999999999999995443
No 122
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.78 E-value=1.1e-08 Score=58.33 Aligned_cols=40 Identities=65% Similarity=1.024 Sum_probs=37.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++.++..
T Consensus 35 ~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 35 GIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 6899999999999999999999999999999999987653
No 123
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.77 E-value=1.2e-08 Score=61.10 Aligned_cols=40 Identities=30% Similarity=0.564 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|.+|++..++++++..+..
T Consensus 38 gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 38 AFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp TCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 5899999999999999999999999999999999988654
No 124
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.77 E-value=8.7e-09 Score=60.96 Aligned_cols=39 Identities=41% Similarity=0.798 Sum_probs=36.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|.+|++ .++++++.++..
T Consensus 40 gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 40 SIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp TCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred CCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence 689999999999999999999999999 899999998765
No 125
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.76 E-value=8.6e-09 Score=60.74 Aligned_cols=37 Identities=43% Similarity=0.860 Sum_probs=34.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEee
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 38 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~ 38 (120)
|+|+++|+|+|+|+.|+|+.++.+|++ .++++++.++
T Consensus 52 gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 52 SIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp TCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 689999999999999999999999999 8999998763
No 126
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.76 E-value=5.5e-09 Score=65.04 Aligned_cols=38 Identities=34% Similarity=0.601 Sum_probs=35.7
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccc-------cCCeEEEEee
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 38 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~-------~~s~i~~~~~ 38 (120)
|||+++|+|+|+|++|+|++||++|+|. .++++++.++
T Consensus 36 gIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 36 KRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 7999999999999999999999999999 6899988876
No 127
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.76 E-value=7.2e-09 Score=60.89 Aligned_cols=40 Identities=68% Similarity=1.068 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++.+|++..++++++.++..
T Consensus 47 gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 47 GIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp CCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 6899999999999999999999999999999999987654
No 128
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.75 E-value=1.4e-08 Score=58.17 Aligned_cols=39 Identities=46% Similarity=0.774 Sum_probs=36.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|.|+|+.|+|+.++.+|++..++++++..++
T Consensus 38 ~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 38 GIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp CCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 689999999999999999999999999999999987643
No 129
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=8.4e-09 Score=63.11 Aligned_cols=40 Identities=20% Similarity=0.475 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|.+|+|..++++++.++..
T Consensus 36 gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 36 SCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp TSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred CCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 6899999999999999999999999999999999998765
No 130
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.75 E-value=1.6e-08 Score=57.60 Aligned_cols=40 Identities=95% Similarity=1.419 Sum_probs=37.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.++++|++.+++++++.++..
T Consensus 35 ~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 6899999999999999999999999999999999987654
No 131
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.1e-08 Score=61.59 Aligned_cols=40 Identities=98% Similarity=1.423 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.+|.+|+|..++++++.++..
T Consensus 57 gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 57 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp CCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred CCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999988654
No 132
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.73 E-value=9.9e-09 Score=61.78 Aligned_cols=40 Identities=20% Similarity=0.531 Sum_probs=37.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.|+.+|++..+++|++.++..
T Consensus 56 gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 56 GVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp TCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999988654
No 133
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.73 E-value=9.2e-09 Score=61.65 Aligned_cols=40 Identities=28% Similarity=0.500 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCC-CCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~-~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+ .+|.+|++..++++++.++..
T Consensus 49 gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 49 NTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred CcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 6899999999999999999 999999999999999988765
No 134
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.1e-08 Score=59.09 Aligned_cols=39 Identities=49% Similarity=0.844 Sum_probs=36.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|++|+|+.++.+|++.+++++++.+++
T Consensus 42 ~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 42 NVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp CCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 689999999999999999999999999999999998754
No 135
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.73 E-value=1.5e-08 Score=58.99 Aligned_cols=40 Identities=90% Similarity=1.293 Sum_probs=37.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
++|+++|+|+|+|++|+|+.++.+|++.+++++++.++..
T Consensus 38 ~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 38 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp CCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred CcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 6899999999999999999999999999999999998654
No 136
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.73 E-value=1.4e-08 Score=60.05 Aligned_cols=40 Identities=98% Similarity=1.423 Sum_probs=35.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++.++..
T Consensus 44 gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 44 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp CCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred CcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 6899999999999999999999999999999999987654
No 137
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.73 E-value=1.9e-08 Score=60.17 Aligned_cols=44 Identities=91% Similarity=1.315 Sum_probs=38.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCCEE
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 44 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m~ 44 (120)
|+|+++|+|+|+|+.|+|+.++.+|++..++++++.++..+-..
T Consensus 36 gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 36 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp CCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred CCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 68999999999999999999999999999999999987764433
No 138
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=1.3e-08 Score=60.08 Aligned_cols=40 Identities=40% Similarity=0.730 Sum_probs=37.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.+|.+|++..++++++.++..
T Consensus 44 gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 44 DVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 6899999999999999999999999999999999998764
No 139
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=61.08 Aligned_cols=40 Identities=35% Similarity=0.578 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++.+|++..++++++.++..
T Consensus 52 gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 52 GIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp TCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred CcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999987654
No 140
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.70 E-value=2.5e-08 Score=60.46 Aligned_cols=40 Identities=43% Similarity=0.557 Sum_probs=37.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|.+|++..++++++..+..
T Consensus 59 gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 59 KSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp TCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 6899999999999999999999999999999999988765
No 141
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.70 E-value=8.6e-09 Score=62.41 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|+++|+|.|+|++|+|+.++.+|+|..++++++.+
T Consensus 63 Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 63 GTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 7899999999999999999999999999999998864
No 142
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.69 E-value=1.8e-08 Score=59.20 Aligned_cols=39 Identities=31% Similarity=0.467 Sum_probs=36.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|++|+|+.+|++|++..++++++..++
T Consensus 46 gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 46 NVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp CCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred CcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 689999999999999999999999999999999987643
No 143
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.69 E-value=6.8e-09 Score=61.36 Aligned_cols=40 Identities=43% Similarity=0.647 Sum_probs=36.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.+|++|++..++++++..+..
T Consensus 39 gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 39 GVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp CSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred CCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 6899999999999999999999999999999999987654
No 144
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.69 E-value=1.5e-08 Score=59.43 Aligned_cols=40 Identities=40% Similarity=0.527 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++.+|++..++++++.++..
T Consensus 42 gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 42 GLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp CCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred CCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEecc
Confidence 6899999999999999999999999999999999988654
No 145
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.69 E-value=2.5e-08 Score=65.84 Aligned_cols=42 Identities=98% Similarity=1.459 Sum_probs=39.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 42 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~ 42 (120)
|+|+++|+|+|+|++|+|+.++.+|++..++++++.++..+.
T Consensus 35 gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (169)
T ss_dssp CCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC-
T ss_pred CcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccc
Confidence 689999999999999999999999999999999999998644
No 146
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.68 E-value=2e-09 Score=79.28 Aligned_cols=79 Identities=13% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
...+.|.|+. +++...+++..+++...|++..+++.|+++..+++.|+|+.+.++.|..++++.+||+|.+..++.||.
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 3457777876 667788999999999999999999999999999999999999999999999999999999999999883
No 147
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.68 E-value=2.7e-08 Score=61.27 Aligned_cols=40 Identities=98% Similarity=1.423 Sum_probs=37.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.+|.+|++..++++++.++..
T Consensus 70 gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 70 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp CCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCC
T ss_pred CCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 6899999999999999999999999999999999998654
No 148
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.68 E-value=2e-08 Score=60.86 Aligned_cols=41 Identities=41% Similarity=0.600 Sum_probs=38.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 41 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~ 41 (120)
|+|+++|+|+|+|+.|+|+.+|.+|++..++++++..+..+
T Consensus 56 gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 56 KAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp TCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 68999999999999999999999999999999999987653
No 149
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.67 E-value=1.5e-08 Score=60.43 Aligned_cols=40 Identities=40% Similarity=0.624 Sum_probs=37.1
Q ss_pred CCCCCceEEEEccEEcCCCCCcccc--ccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y--~i~~~s~i~~~~~~~ 40 (120)
++|+++|+|+|+|++|+|+.+|.+| ++..++++++.++..
T Consensus 46 ~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 46 RPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred CCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 5899999999999999999999999 999999999987654
No 150
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.6e-08 Score=61.31 Aligned_cols=38 Identities=47% Similarity=0.809 Sum_probs=36.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEee
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 38 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~ 38 (120)
|+|+++|+|+|+|+.|+|+.+|++|++..++++++..+
T Consensus 62 gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 62 GIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp SCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred CcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999998864
No 151
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=3.2e-08 Score=61.28 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=38.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 42 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~ 42 (120)
++|+++|+|.|+|+.|+|+.||.+|++..+.++|+.++...+
T Consensus 51 ~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 51 GIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp TCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred CCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 689999999999999999999999999999999999886543
No 152
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.63 E-value=1.5e-07 Score=55.52 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.5
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
..|.|+|-.++++...+++.|++++.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+.++++..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 44789999999999999999999999999999999999999999999999999999999999999999998754
No 153
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.06 E-value=3.9e-09 Score=60.45 Aligned_cols=40 Identities=43% Similarity=0.781 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.++++|++.+++++++.++..
T Consensus 35 gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 35 GVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 6899999999999999999999999999999999987654
No 154
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.61 E-value=3.3e-08 Score=60.40 Aligned_cols=40 Identities=25% Similarity=0.569 Sum_probs=37.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|.+|++..++++++..+..
T Consensus 58 gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 58 GVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp CCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred CcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 6899999999999999999999999999999999998654
No 155
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.60 E-value=4.7e-08 Score=59.79 Aligned_cols=40 Identities=35% Similarity=0.610 Sum_probs=37.3
Q ss_pred CCCCCc-eEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~-q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++ |+|+|+|+.|+|+.+|.+|++..++++++..+..
T Consensus 61 gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 61 SVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp TCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEESSC
T ss_pred CCChhhcEEEEECCeECCCCCcHHHcCCCCCCEEEEEeCCC
Confidence 689999 9999999999999999999999999999988754
No 156
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.60 E-value=4.5e-08 Score=60.63 Aligned_cols=40 Identities=35% Similarity=0.695 Sum_probs=37.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|++|++..++++++.++..
T Consensus 70 gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~ 109 (115)
T 1we7_A 70 GMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKER 109 (115)
T ss_dssp SCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCC
T ss_pred CCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 6899999999999999999999999999999999987654
No 157
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.59 E-value=1.7e-08 Score=67.77 Aligned_cols=47 Identities=91% Similarity=1.344 Sum_probs=41.7
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCCEEEEE
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV 47 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m~i~v 47 (120)
|+|+++|+|+|+|++|+|+.+|++|++.+++++++.++..+-..++|
T Consensus 140 gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~fv 186 (189)
T 3q3f_A 140 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTFT 186 (189)
T ss_dssp CCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCCC
T ss_pred CCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcceE
Confidence 68999999999999999999999999999999999998775544444
No 158
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.59 E-value=3.3e-08 Score=60.82 Aligned_cols=40 Identities=38% Similarity=0.498 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|++|++..++++++.++..
T Consensus 66 gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 66 QIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp TCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSC
T ss_pred CCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 6899999999999999999999999999999999987654
No 159
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.58 E-value=6.7e-08 Score=60.79 Aligned_cols=40 Identities=43% Similarity=0.526 Sum_probs=36.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|.+|+|..++++++..+..
T Consensus 66 gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 66 KSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp CSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred CcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 6899999999999999999999999999999999988654
No 160
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.58 E-value=5.2e-08 Score=59.43 Aligned_cols=40 Identities=43% Similarity=0.626 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|.+|+|..++++++..+..
T Consensus 51 gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 51 KAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp TCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCC
T ss_pred CcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 6899999999999999999999999999999999988764
No 161
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.57 E-value=3.4e-07 Score=53.23 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=58.1
Q ss_pred EEEEEEe--CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC-----ceEEEeCCEEcCCCCccccCCCCCCCEEEE
Q 038333 43 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 43 m~i~v~~--~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~-----~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
+.|++.. ..++.+.++++...|+.+|+..+.+.++++.. .+++..++..|.++..|++|+|.+||.+.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4556653 57899999999999999999999999997542 235567888999999999999999999976
No 162
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.57 E-value=2e-08 Score=60.18 Aligned_cols=40 Identities=38% Similarity=0.498 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|.+|++..++++++.++..
T Consensus 51 gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 51 HCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp CSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 6899999999999999999999999999999999988764
No 163
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.56 E-value=1e-07 Score=58.63 Aligned_cols=40 Identities=98% Similarity=1.423 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+|+.+|++|++..++++++.++..
T Consensus 70 gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 70 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp CCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred CcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 6899999999999999999999999999999999987654
No 164
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.53 E-value=1.2e-07 Score=58.86 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=33.4
Q ss_pred CCCCceEEEEccEEcCCCCCccccccccC--CeEEEEeecC
Q 038333 2 IPPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLVLRLR 40 (120)
Q Consensus 2 ~~~~~q~l~~~g~~L~d~~~l~~y~i~~~--s~i~~~~~~~ 40 (120)
+|+++|+|.|+|++|+|+.||++|+|..+ +++++.++..
T Consensus 60 ~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLvlr~~ 100 (116)
T 1wgh_A 60 SSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARET 100 (116)
T ss_dssp CCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEEECSS
T ss_pred CChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEccCC
Confidence 46999999999999999999999999765 5677777654
No 165
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.51 E-value=1.5e-07 Score=57.37 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=35.4
Q ss_pred CCCCCceEEEEccEEcCCCCCcccccc-ccCCeEEEEee
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 38 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i-~~~s~i~~~~~ 38 (120)
|+|+++|+++|+|+.++|+.|+.+|+| ..++++++.+-
T Consensus 61 Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 61 GFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred CCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 799999999999999999999999999 59999999873
No 166
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.51 E-value=8.4e-08 Score=56.54 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=35.5
Q ss_pred CCCCCceEEEE-------ccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~-------~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|.| .|+.|+|+++|++|++..++++|+.-+.
T Consensus 39 Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 39 ATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp CCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 79999999996 5899999999999999999999998654
No 167
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.51 E-value=1.5e-07 Score=59.11 Aligned_cols=40 Identities=33% Similarity=0.569 Sum_probs=34.4
Q ss_pred CCCC--CceEEEEccEEcCCCCCccccccccC------CeEEEEeecC
Q 038333 1 GIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------STLHLVLRLR 40 (120)
Q Consensus 1 ~~~~--~~q~l~~~g~~L~d~~~l~~y~i~~~------s~i~~~~~~~ 40 (120)
|+|+ ++|+|.|+|+.|+|+.||++|+|..+ +++++.++..
T Consensus 57 giP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~ 104 (126)
T 1se9_A 57 NGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAP 104 (126)
T ss_dssp SSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCC
T ss_pred cCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccC
Confidence 4665 89999999999999999999999987 5677777665
No 168
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.48 E-value=1.1e-07 Score=56.44 Aligned_cols=40 Identities=33% Similarity=0.564 Sum_probs=36.3
Q ss_pred CCCCCceEEEEccEEcCC-CCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d-~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|+.|+| +.+|.+|++..++++++..+..
T Consensus 46 gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 46 GVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp CCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred CcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 689999999999999987 6789999999999999987654
No 169
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.47 E-value=8e-08 Score=57.71 Aligned_cols=39 Identities=18% Similarity=0.417 Sum_probs=36.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+ ++.+|+|..+++++++.+..
T Consensus 42 gip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 42 GVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899999999999999999 99999999999999987654
No 170
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.46 E-value=1.3e-07 Score=56.06 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=37.1
Q ss_pred CCCCCceEEE---EccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~---~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|. |+|++|+|+.++++|+|..+++++++.+..
T Consensus 42 gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 42 GVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred CcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 6899999999 999999999999999999999999987654
No 171
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.46 E-value=9e-08 Score=58.04 Aligned_cols=40 Identities=18% Similarity=0.507 Sum_probs=36.5
Q ss_pred CCCCCceEEEEccEEcCCC-CCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~-~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+ .+|.+|+|..++++++..+..
T Consensus 46 gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 46 GVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp CCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred CcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 6899999999999999877 799999999999999988754
No 172
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.45 E-value=1.4e-06 Score=51.96 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=48.4
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEc--CCCCccccCCCC-CCCEEEEEE
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQ-KESTLHLVL 113 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L--~d~~~L~~~~i~-~g~~i~v~~ 113 (120)
.+..+.+.+.++.|+..+|++|++++|+|++.|+|+|.|+.+ .++.+...|.-. ...-+.+..
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 356788999999999999999999999999999999999765 455666666432 223344443
No 173
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.44 E-value=2.4e-08 Score=63.00 Aligned_cols=40 Identities=98% Similarity=1.423 Sum_probs=0.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.+|++|+|.+++++++.++..
T Consensus 35 gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp ----------------------------------------
T ss_pred CcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 6899999999999999999999999999999999887544
No 174
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.43 E-value=6.6e-07 Score=56.29 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=57.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC-c------------------------------------eEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-Q------------------------------------QRLI 86 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~-~------------------------------------~~L~ 86 (120)
.+.|+.++|+...+.|+.+.||.+++..|+.+.|++.. . ++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999998743 2 2221
Q ss_pred e--CCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 87 F--AGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 87 ~--~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
. ...-|+++.+|.++||.+++++.+..|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 124567899999999999999877654
No 175
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.42 E-value=1e-07 Score=57.59 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=31.5
Q ss_pred CC-CCceEEEEccEEcCCCCCcccc--ccccCCeEEE
Q 038333 2 IP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHL 35 (120)
Q Consensus 2 ~~-~~~q~l~~~g~~L~d~~~l~~y--~i~~~s~i~~ 35 (120)
+| +++|+|+|+|++|+|+.+|++| ++..++++++
T Consensus 62 ~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 62 KPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp CCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 44 5999999999999999999999 9999999886
No 176
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.39 E-value=3.7e-08 Score=63.94 Aligned_cols=40 Identities=98% Similarity=1.423 Sum_probs=0.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++|+|+|+|++|+|+.+|++|+|.+++++++.++..
T Consensus 35 gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 35 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp ----------------------------------------
T ss_pred CCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 6899999999999999999999999999999999988664
No 177
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.34 E-value=5.1e-07 Score=53.81 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=34.2
Q ss_pred CCceEEEEccEEcCCC-CCccccccccCCeEEEEeecC
Q 038333 4 PDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 4 ~~~q~l~~~g~~L~d~-~~l~~y~i~~~s~i~~~~~~~ 40 (120)
+++|+|+|+|+.|+|+ .+|.+|++..++++++..+..
T Consensus 42 ~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 42 ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 5799999999999998 999999999999999998754
No 178
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.33 E-value=4.3e-07 Score=57.08 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=32.3
Q ss_pred CCCceEEEEccEEcCCCCCccccccccCC--eEEEEeecC
Q 038333 3 PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLVLRLR 40 (120)
Q Consensus 3 ~~~~q~l~~~g~~L~d~~~l~~y~i~~~s--~i~~~~~~~ 40 (120)
|+++|+|.|+|++|+|+.||++|+|..++ ++++.++..
T Consensus 62 ~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~ 101 (125)
T 2gow_A 62 SPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARET 101 (125)
T ss_dssp CGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEEECSC
T ss_pred ChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEecCC
Confidence 58999999999999999999999999766 566666554
No 179
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.25 E-value=1.3e-05 Score=46.72 Aligned_cols=72 Identities=18% Similarity=0.327 Sum_probs=60.6
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEc---CCCCccccCCCCCCCEEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~v~~ 113 (120)
+...|.|+.++|+...-....++||.+|..-|.. .+.+...+.|+ |-.+.+ +.+.+|.+.|+.+.+++.|.-
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 3467889999999888899999999999999998 56777888888 456777 456899999999999888754
No 180
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.24 E-value=9.4e-07 Score=52.94 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=32.7
Q ss_pred CCCCCceEEEEc--cE---Ec-CCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~--g~---~L-~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|||+++|+|+|. |+ .| +|+++|++|++.+++++++.-
T Consensus 52 GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 52 GGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp CSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred CcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 799999999998 44 45 999999999999999999863
No 181
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=4.4e-07 Score=53.63 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=32.1
Q ss_pred CCCCCceEEEEc--cEEcCCCCCccccccccCCeEEE
Q 038333 1 GIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 35 (120)
Q Consensus 1 ~~~~~~q~l~~~--g~~L~d~~~l~~y~i~~~s~i~~ 35 (120)
|+|+++|+|.|. |++|+|+.++++|++.+++++++
T Consensus 49 ~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 49 QWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp SSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred CCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 589999999976 99999999999999999998775
No 182
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.19 E-value=1.2e-06 Score=54.66 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=34.6
Q ss_pred CCCCCceEEEEcc---E---E-cCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g---~---~-L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|||+++|+|.|.| + . ++|+.+|.+|++..++++++....+
T Consensus 42 Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p 88 (122)
T 1t0y_A 42 GTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTG 88 (122)
T ss_dssp CCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTT
T ss_pred CCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCC
Confidence 7999999999987 3 3 4899999999999999999887443
No 183
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.16 E-value=1e-06 Score=53.00 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCCCceEEEEcc---EE----cCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g---~~----L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|||+++|+|.|.| +. ++|+++|++|++.+++++++.-
T Consensus 51 Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 51 GTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp CCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred CcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 7999999999988 33 4999999999999999999875
No 184
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.15 E-value=2.1e-06 Score=61.46 Aligned_cols=39 Identities=97% Similarity=1.419 Sum_probs=35.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|++|+|+.+|++|+|..++++++.++.
T Consensus 268 GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 268 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp CCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 689999999999999999999999999999999998753
No 185
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.14 E-value=6.8e-07 Score=54.51 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=33.6
Q ss_pred CCceEEEEccEEc-CCCCCccccccccCCeEEEEeecCC
Q 038333 4 PDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRLRG 41 (120)
Q Consensus 4 ~~~q~l~~~g~~L-~d~~~l~~y~i~~~s~i~~~~~~~~ 41 (120)
|.+|+|.|+|++| +|+.+|.+|+|.+++++++..+..+
T Consensus 60 w~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 60 WRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp HTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECSCS
T ss_pred ceeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEehhcc
Confidence 4678999999999 5789999999999999999987654
No 186
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.12 E-value=4.2e-07 Score=54.40 Aligned_cols=38 Identities=26% Similarity=0.516 Sum_probs=34.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|+|+|++|+|. +|.+|++..+++++++.+.
T Consensus 51 gip~~~QrL~~~Gk~Ldd~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 51 GLPPAMQKVMYKGLVPEDK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CSCSTTCCCBSSSBCCSSS-BHHHHCCCTTEEEEECCSS
T ss_pred CcCHHHeEEEECCeeCCcC-cHHHCCCCCCCEEEEEecc
Confidence 6899999999999999555 9999999999999988654
No 187
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.10 E-value=1.9e-06 Score=51.43 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.4
Q ss_pred CCCCCceEEEEcc---EE----cCCCCCccccccccCCeEEEEee
Q 038333 1 GIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 38 (120)
Q Consensus 1 ~~~~~~q~l~~~g---~~----L~d~~~l~~y~i~~~s~i~~~~~ 38 (120)
|+|+++|+|+|.| +. ++|+.+|.+|++..++++++...
T Consensus 43 gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 43 GSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp CSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred CCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 7899999999986 43 58999999999999999998753
No 188
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.01 E-value=1.4e-06 Score=52.72 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.6
Q ss_pred CCCCCceEEEE--ccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~--~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|||+++|+|.| .|+ |+|+.++++|+|.+++++++.+.+.
T Consensus 43 gIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 43 QIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred CCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 79999999986 566 9999999999999999999987654
No 189
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.99 E-value=4.9e-06 Score=60.96 Aligned_cols=37 Identities=32% Similarity=0.612 Sum_probs=33.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|+|+++|+|+|+|+.|+|+++|.+|+|..++++.+++
T Consensus 45 gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 45 AFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp SCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred CCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEE
Confidence 5899999999999999999999999999999994444
No 190
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.99 E-value=8e-06 Score=48.73 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|+++++|.|.|++|+++.|..+|++..+++|++.++..
T Consensus 42 gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 42 GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp TCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 6899999999999999999999999999999999998654
No 191
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.98 E-value=0.00024 Score=51.78 Aligned_cols=99 Identities=26% Similarity=0.382 Sum_probs=79.4
Q ss_pred cEEcCCCCCccccccccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEeCC--
Q 038333 13 GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG-- 89 (120)
Q Consensus 13 g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~~g-- 89 (120)
|+=|++.+++..|++.++..+.... .++.+.|..++|....+.+++.+|+.++-+.|+++.|+.. +.+-|.+..
T Consensus 59 ~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~ 135 (371)
T 3ivf_A 59 GIWLEAGKALDYYMLRNGDTMEYRK---KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELME 135 (371)
T ss_dssp CEECCTTSBGGGGTCCTTCEEEEEE---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC--
T ss_pred CEeccCCCCHHHhCCCCCceeeccC---ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecc
Confidence 5568888899999999999888876 5588999999999999999999999999999999999854 455666532
Q ss_pred -------EEcCCCCccccCCCCCCCEEEEEEE
Q 038333 90 -------KQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 90 -------~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
.-|+.++++.+.+.....++++.+|
T Consensus 136 ~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 136 EKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp --------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 2355677888877766667766555
No 192
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.97 E-value=9.2e-05 Score=45.24 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=61.8
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcC---CCCccccCCCCCCCEEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~---d~~~L~~~~i~~g~~i~v~~ 113 (120)
....|.|+.++|+...-+++.++||.+|+.-|....+.+...+.|+ |-.+.+. .+.+|.+.|+.+..++.+..
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 3578999999999999999999999999999999988877788887 5566775 36899999999887776654
No 193
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=97.88 E-value=1.8e-05 Score=44.76 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=34.2
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEE
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~ 36 (120)
|+|++.+++.|.|++|+++.|..+|++..+++|++.
T Consensus 36 gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 36 GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp TCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred CCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999999999876
No 194
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=97.87 E-value=2.4e-05 Score=46.37 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=37.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|++.+++.|.|++|+++.|..+|++..+++|.+.....
T Consensus 40 gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 40 GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp TCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 6899999999999999999999999999999999998654
No 195
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.86 E-value=0.00015 Score=45.36 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=60.9
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEc--C-CCCccccCCCCCCCEEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L--~-d~~~L~~~~i~~g~~i~v~~ 113 (120)
....|.|+.++|+.+.-.+..++||.+|..-|... +.+...+.|+ |-.+.+ . .+.+|.+.|+.+...+.|..
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 45789999999998999999999999999999887 7777888887 557777 3 47899999999887776653
No 196
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=97.81 E-value=2.7e-05 Score=46.28 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=36.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|++.++|.|.|++|.++.|..+|++..+++|++.++..
T Consensus 52 gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 52 GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp TCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 6889999999999999999999999999999999987643
No 197
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.72 E-value=4.4e-06 Score=55.84 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|||+++|+|+|+|++|+|+.+|+ .+|++++.++..
T Consensus 35 GIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLr 69 (189)
T 2xzm_9 35 GFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLL 69 (189)
T ss_dssp ----------------------------------------
T ss_pred CcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecC
Confidence 68999999999999999999998 778888776543
No 198
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.72 E-value=0.0012 Score=36.89 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=52.3
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..|+|+|....+ ...++++...|+.+|.+.+ ++++....+..||..+..+. -+++||.|.+..-..||
T Consensus 3 ~~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 3 IGMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CCEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eeEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 348888886643 3567888889999999877 46677777889999987654 57789999888766665
No 199
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=97.71 E-value=3.6e-05 Score=44.34 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=34.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEE
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~ 36 (120)
|++++++++.|.|++|+++.|..+|++..+++|+++
T Consensus 43 gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 43 GLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp TCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 688999999999999999999999999999999875
No 200
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=97.66 E-value=0.00041 Score=47.20 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=59.8
Q ss_pred CEEEEEEeCCC--CEEEEEEcCCCCHHHHHHHHHhhcCCCCC-ceEEE--e-CC--EEcCC-CCccccCCCCCCCEEEEE
Q 038333 42 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLV 112 (120)
Q Consensus 42 ~m~i~v~~~~g--~~~~i~v~~~~tV~~LK~~i~~~~~~~~~-~~~L~--~-~g--~~L~d-~~~L~~~~i~~g~~i~v~ 112 (120)
++.+.+..... ....+.++..+|+.+|++.+.+.++++++ +.||. + .+ ..|.+ +.+|.++++.++..|.+.
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 44555543332 23567889999999999999999999986 68876 2 22 35665 579999999999999999
Q ss_pred EEcCCCCC
Q 038333 113 LRLRGGEF 120 (120)
Q Consensus 113 ~~~~gG~~ 120 (120)
+|..+|.+
T Consensus 207 ~r~~dg~W 214 (217)
T 4a3p_A 207 QKNEDGTW 214 (217)
T ss_dssp ECCCC-CC
T ss_pred EecCCCCC
Confidence 99888753
No 201
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=97.66 E-value=0.00087 Score=46.04 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=60.5
Q ss_pred CEEEEEEeCCCC--EEEEEEcCCCCHHHHHHHHHhhcCCCCC-ceEEEe-C----CEEcCC-CCccccCCCCCCCEEEEE
Q 038333 42 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLV 112 (120)
Q Consensus 42 ~m~i~v~~~~g~--~~~i~v~~~~tV~~LK~~i~~~~~~~~~-~~~L~~-~----g~~L~d-~~~L~~~~i~~g~~i~v~ 112 (120)
++.+.+...... .+.+.++..+|+.+|++.+.+.++++++ +.||.. . ...|.| +.+|.++++.++..|.+-
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 345555433322 3456779999999999999999999987 688873 3 246664 589999999999999999
Q ss_pred EEcCCCC
Q 038333 113 LRLRGGE 119 (120)
Q Consensus 113 ~~~~gG~ 119 (120)
+|-.+|.
T Consensus 219 ~r~~dg~ 225 (231)
T 3jyu_A 219 PQNEDGT 225 (231)
T ss_dssp ECCTTSC
T ss_pred EecCCCC
Confidence 9988875
No 202
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65 E-value=0.00013 Score=42.28 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=59.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe---CCEEcCCCCccccCCCCC
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 105 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~---~g~~L~d~~~L~~~~i~~ 105 (120)
+..++.+.|..+..+...++|+|..++.+|--.|+++..+.++...|.. .+.+|+-+++|.+|||+.
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 4577899999888888899999999999999999999999999998874 456888899999999985
No 203
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=97.65 E-value=6.8e-05 Score=45.66 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=36.6
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|++++.++++|.|++|+++.|..+|++..+++|.+.++..
T Consensus 65 gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 65 GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp TCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 6889999999999999999999999999999999987643
No 204
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.61 E-value=1.2e-05 Score=49.05 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=35.4
Q ss_pred CCCCCceEEEEccE-----------E----cCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~-----------~----L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
++|+++|+|.+.|+ + ++|+.+|.+|++.+++.+++.....
T Consensus 42 gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 42 QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGE 96 (107)
T ss_dssp CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSSC
T ss_pred CcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 68999999999888 4 5899999999999999999987654
No 205
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=97.61 E-value=2e-05 Score=56.76 Aligned_cols=43 Identities=19% Similarity=0.424 Sum_probs=35.7
Q ss_pred CCCCCceEEE---EccEEcCCCCCccccccccCCeEEEEeecCCCE
Q 038333 1 GIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 43 (120)
Q Consensus 1 ~~~~~~q~l~---~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~m 43 (120)
|||+++|+|. |+|++|+|+.++++|+|.++++++++-+..+.+
T Consensus 39 gVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~i 84 (320)
T 3shq_A 39 QVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEADI 84 (320)
T ss_dssp CCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC---
T ss_pred CcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhhh
Confidence 7999999999 999999999999999999999999987766543
No 206
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.54 E-value=4.1e-05 Score=46.47 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=37.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+|++.++|+|.|++|.+..|..+|++..+++|++.++..
T Consensus 59 gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 59 GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp TCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 6889999999999999999999999999999999987654
No 207
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.48 E-value=0.0008 Score=40.97 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=59.2
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE--eCCEEcC--CCCccccCCCCCCCEEEEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~--d~~~L~~~~i~~g~~i~v~~~ 114 (120)
..+|.|+.++|+.+.-++..++||.+|..-|... +..+..+.|+ |-.+.+. .+.||.+.|+.+..++.|.-+
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 4789999999998888999999999999999965 5556778887 4566665 468999999999888877543
No 208
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=97.46 E-value=0.0025 Score=37.90 Aligned_cols=74 Identities=14% Similarity=0.320 Sum_probs=51.7
Q ss_pred CCCEEEEEEeCC------C-CEEEEEEcCCCCHHHHHHHHHhhcC-C----------CCCceEEEeCCEEcCCCCccccC
Q 038333 40 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 40 ~~~m~i~v~~~~------g-~~~~i~v~~~~tV~~LK~~i~~~~~-~----------~~~~~~L~~~g~~L~d~~~L~~~ 101 (120)
.++|+|+|+... | ....++++...||.+|.+.+...+. + ......+..||+.... +.
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 467999998864 3 4677888888999999999988752 1 1244567788887753 55
Q ss_pred CCCCCCEEEEEEEcCCC
Q 038333 102 NIQKESTLHLVLRLRGG 118 (120)
Q Consensus 102 ~i~~g~~i~v~~~~~gG 118 (120)
-+++||.|.+..-..||
T Consensus 82 ~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 82 ELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp BCCTTCEEEEESCC---
T ss_pred CCCCCCEEEEECCCCCC
Confidence 68889999888766665
No 209
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.40 E-value=0.00026 Score=42.11 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.3
Q ss_pred CCCCCceEEEEcc-------EEc-CCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g-------~~L-~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+..|+|++.+ ..| +|..+|..|++.++++|++..+.
T Consensus 47 gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 47 KVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp TCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred CCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 6899999999873 346 88999999999999999988644
No 210
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=97.37 E-value=5.5e-05 Score=46.38 Aligned_cols=41 Identities=17% Similarity=0.532 Sum_probs=38.1
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 41 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~ 41 (120)
|+|+++++|.|.|++|++..|..+|++..+++|.+++...+
T Consensus 61 gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 61 GISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp TCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 68899999999999999999999999999999999987654
No 211
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.32 E-value=0.00092 Score=41.83 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=55.0
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhc-CCCCCceEEE--eCCEEcCC-CCccccCCCCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKES 107 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~-~~~~~~~~L~--~~g~~L~d-~~~L~~~~i~~g~ 107 (120)
....|.|+.++|+...-.++.++||.+|+.-|.... +.....+.|+ |-.+.+.| +.+|.+.|+.+..
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psa 121 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV 121 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCce
Confidence 357899999999988999999999999999999864 3455677777 56778864 6899999999743
No 212
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=97.29 E-value=0.0019 Score=36.39 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=47.8
Q ss_pred EEEEEEeCCC-CEEEEEEcCCCCHHHHHHHHHhhcCCCC--CceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 43 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 43 m~i~v~~~~g-~~~~i~v~~~~tV~~LK~~i~~~~~~~~--~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
|.|+|+.... +...+++ ...||.+|.+.+..+.++.. ....+.-||+...+ .+.-+++||.|.+..-..||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 4566665432 1134666 56899999999987643321 45677788887542 24558889999998887776
No 213
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.26 E-value=0.0013 Score=37.37 Aligned_cols=66 Identities=15% Similarity=0.334 Sum_probs=49.0
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
|+|+|+..+.+...+++++..|+++|-+ ..++|++..-+..||+.+..+. +.+||+|.+. +.-||+
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv-~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL-RLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC-SSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEE-Eeeccc
Confidence 6778886654566789999999998764 6789998887778999887555 2359999776 444443
No 214
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.25 E-value=0.0049 Score=44.84 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=59.2
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC----CCCCceEEEe------CCEEcCCCCccccCCCCCCCEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~----~~~~~~~L~~------~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
.+.+.|... +.+..+++++++||.+....|.++.. .++++.-|+. +|.=|.+.++|..|++++++.+..
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 345556655 66789999999999999999988875 3677777776 344578888999999999998766
Q ss_pred E-------EEcCCCC
Q 038333 112 V-------LRLRGGE 119 (120)
Q Consensus 112 ~-------~~~~gG~ 119 (120)
. |.+.+|.
T Consensus 82 ~~~~~~~~V~l~dg~ 96 (371)
T 3ivf_A 82 RKKQRPLKIRMLDGT 96 (371)
T ss_dssp EECEEEEEEECTTSC
T ss_pred cCceeEEEEECcCCC
Confidence 5 5555653
No 215
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.20 E-value=0.00017 Score=41.92 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCCCCceEEEEc--cEEcC---CCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~--g~~L~---d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|+|+++|+|.|+ +++|+ ++.++.+|++.+++++++....
T Consensus 35 gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 35 GIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 688999999987 47874 7899999999999999887654
No 216
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.14 E-value=0.0019 Score=37.82 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=47.3
Q ss_pred CCEEEEEEeCCCCEEEEEEcCC-CCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~-~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
..|+|+|. |+ .++++.. .||.+|.+.+ ++++....+..||+.+..+ ...+.-+++||.|.+..-..||
T Consensus 19 ~~M~I~vN---Ge--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQLN---GK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEET---TE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEEC---CE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 34666554 43 5566776 8999999876 5667778888999988633 3445668899999998777665
No 217
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=97.12 E-value=0.004 Score=35.95 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=53.3
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
..-.++-..+++.||..++.+.+++.+...+...+..|.++++|.+.+++-...+.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3445777889999999999999999999999999999999999999999888887776653
No 218
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.09 E-value=0.0034 Score=36.36 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=42.3
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 90 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~ 90 (120)
.+|.|.|+.. -+..|+++++.+..+|+++|+++.++|++...|.|...
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 3477888865 58999999999999999999999999999999999763
No 219
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.09 E-value=0.0012 Score=40.69 Aligned_cols=39 Identities=21% Similarity=0.546 Sum_probs=36.4
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|++++.++++|.|++|++..|..++++..+++|.++...
T Consensus 75 Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 75 GVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp TCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 688999999999999999999999999999999998754
No 220
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0025 Score=42.87 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=43.8
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCC----CEEEEEEeCCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG----GMQIFVKTLTG 52 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~----~m~i~v~~~~g 52 (120)
|+|+.+++++|.|++|++..|..++++..+++|.++....+ .+.+....-.|
T Consensus 63 Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~kd~v~Fs~~GD~G 118 (200)
T 3pge_A 63 GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGGETIKFVADGDIG 118 (200)
T ss_dssp SSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-CCEEEEEECSSC
T ss_pred CCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcCceEEEEeeccCC
Confidence 68999999999999999999999999999999999998743 35555554433
No 221
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=96.61 E-value=0.0032 Score=34.65 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=42.4
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.++++...|+.+|.+.+ ++++....+..||+..... ...+.-+++||.|.+..-..||
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 44556778999999887 4567777888999888532 2334557889999888766665
No 222
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.50 E-value=0.026 Score=33.08 Aligned_cols=50 Identities=8% Similarity=0.157 Sum_probs=40.9
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEeCCEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 91 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~~g~~ 91 (120)
..|+|.+. .+|....+.++++.+..+|.+++...++++. +.+.+.|....
T Consensus 5 ~~vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 5 SQVRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp SCEEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred CeEEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 45777777 4567899999999999999999999999875 44788887653
No 223
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=96.47 E-value=0.034 Score=32.08 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=45.8
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCC------CC-----CceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGI------PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~------~~-----~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+...++++...||.+|.+.+...+.- .. ....+.-||+.... +.-+++||.|.+..-..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 46678887788999999999887631 10 12577789988764 4557889999998888776
No 224
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.44 E-value=0.047 Score=33.23 Aligned_cols=72 Identities=35% Similarity=0.445 Sum_probs=47.6
Q ss_pred EEEEEEeCC--CCEEEEEEcCCCCHHHHHHHHHhhc--CCC------CCceEEEe----CCEEcCCC-------------
Q 038333 43 MQIFVKTLT--GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG------------- 95 (120)
Q Consensus 43 m~i~v~~~~--g~~~~i~v~~~~tV~~LK~~i~~~~--~~~------~~~~~L~~----~g~~L~d~------------- 95 (120)
+++.+...+ +...++++-..+||.+.|++|-... |.| ++.+.|.+ .|+.|.|.
T Consensus 12 ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrL 91 (111)
T 4e71_A 12 LTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRV 91 (111)
T ss_dssp EEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCC
T ss_pred EEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEe
Confidence 445544332 3457788888999999999996532 332 45666664 23455431
Q ss_pred CccccCCCCCCCEEEEEEE
Q 038333 96 RTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v~~~ 114 (120)
.||+.|+|++|+++.+..+
T Consensus 92 NTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 92 NTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CBHHHHTCCTTCEEEEEEC
T ss_pred cchhhcCCCCCCEEEEEeC
Confidence 3799999999999988654
No 225
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.39 E-value=0.0074 Score=34.49 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=33.6
Q ss_pred CCCCC-ceEEEEccEEcCCCCCccccccccCCeEEEEe
Q 038333 1 GIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 37 (120)
Q Consensus 1 ~~~~~-~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~ 37 (120)
|||++ .-+|+|.|..|+.+.++.+|.+..+.-+.+++
T Consensus 44 ~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 44 KISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp TCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred CCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 57888 88999999999999999999999999888764
No 226
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.30 E-value=0.039 Score=34.81 Aligned_cols=63 Identities=32% Similarity=0.496 Sum_probs=45.0
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhc--CC------CCCceEEEe----CCE-EcCCC-------------CccccCCCCCC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKE--GI------PPDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 106 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~--~~------~~~~~~L~~----~g~-~L~d~-------------~~L~~~~i~~g 106 (120)
...+++|-..+||.+.|++|-... +. .++++-|-+ .|+ .|.|. .||+.|+|++|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457888989999999999997642 33 344555554 233 35542 27999999999
Q ss_pred CEEEEEEEc
Q 038333 107 STLHLVLRL 115 (120)
Q Consensus 107 ~~i~v~~~~ 115 (120)
+++.+..+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999988764
No 227
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0035 Score=41.96 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=37.5
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+++..+++.|.|++|+++.|..++++..+++|.++....
T Consensus 91 GL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~ 130 (207)
T 3tix_A 91 GKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQI 130 (207)
T ss_dssp TCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCC
T ss_pred CCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecc
Confidence 6889999999999999999999999999999999998765
No 228
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=96.28 E-value=0.037 Score=32.24 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=42.5
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCC------C---C----CceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGI------P---P----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~------~---~----~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.++. ...||.+|.+.+..++.- . . ....+.-||+......- .+.-+++||.|.+..-..||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 4664 467999999999987631 1 0 13567788887753222 24558899999999888877
No 229
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=96.24 E-value=0.047 Score=33.35 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCEEEEEEeCC------C--CEEEEEEcC---CCCHHHHHHHHHhhcC-CCC----------CceEEEeCCEEcCCCCcc
Q 038333 41 GGMQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEG-IPP----------DQQRLIFAGKQLEDGRTL 98 (120)
Q Consensus 41 ~~m~i~v~~~~------g--~~~~i~v~~---~~tV~~LK~~i~~~~~-~~~----------~~~~L~~~g~~L~d~~~L 98 (120)
++|+|+|+.+. | +.+.++++. ..||.+|...+++.+. ..+ ..+.++.|++.. ..|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di---~~l 86 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADW---ELL 86 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBH---HHH
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeee---ecc
Confidence 55888888765 3 356788873 3699999999998862 100 012233344311 011
Q ss_pred --ccCCCCCCCEEEEEEEcCCC
Q 038333 99 --ADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 99 --~~~~i~~g~~i~v~~~~~gG 118 (120)
.++-+++||.|.++..+.||
T Consensus 87 ~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 87 GELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp CTTTCBCCSSEEEEEEECSCCC
T ss_pred CCcCcCCCCCCEEEEeCCCCCC
Confidence 34678899999998888777
No 230
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=96.17 E-value=0.026 Score=31.92 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=42.3
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcC-----CCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~-----~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
...++ ....||.+|.+.+...+. ++.....+..||+.... +.-+++||.|.+..-..||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 44455 456799999999986642 23345667789988753 4467889999988777776
No 231
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=96.08 E-value=0.015 Score=32.67 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=43.4
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCce--EEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~--~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+...++++...||.+|.+.+...+. ..... .+..||+....+ .-+++||.|.+..-..||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 3456667677899999999987752 11334 677899888653 457789999888766665
No 232
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=96.06 E-value=0.085 Score=37.29 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=56.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEe--CCE--EcCCCCccccCCCCCCCEEEEEE
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~--~g~--~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
...++.+.|..++| +..+.+++.+|+.+|-+.|++..|+.. +.+-|.+ ++. -|+.++++.+.+++.+....+..
T Consensus 19 ~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 19 QPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp --CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred CCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 35678999999998 788999999999999999999999865 3445554 443 47788889988766555554444
Q ss_pred E
Q 038333 114 R 114 (120)
Q Consensus 114 ~ 114 (120)
|
T Consensus 98 r 98 (314)
T 1h4r_A 98 L 98 (314)
T ss_dssp E
T ss_pred E
Confidence 4
No 233
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=96.04 E-value=0.072 Score=37.24 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=54.5
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC-ceEEEe---CCE--EcCCCCccccCCCCCCCEEEEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~-~~~L~~---~g~--~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
+|.+.|..++| +..+.+++.+|+.+|-+.|++..|+... .+-|.+ +|. -|+.++++.+.+++.+....+..|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 47888999998 6789999999999999999999998653 345554 333 467788888887665655555444
No 234
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=95.93 E-value=0.0062 Score=34.79 Aligned_cols=62 Identities=15% Similarity=0.329 Sum_probs=46.1
Q ss_pred CCCEEEEEEc--CCCCHHHHHHHHHhhcCCC-CCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 51 TGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 51 ~g~~~~i~v~--~~~tV~~LK~~i~~~~~~~-~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
+|+ ..+++ ...||.+|.+.+ +++ +...-+..||..+..+ ...+.-+++||.|.+..-..||.
T Consensus 6 NGe--~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGK--PSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTE--EEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CCE--EEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 454 44555 678999988755 677 7778888999988644 45567788899999987777773
No 235
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=95.88 E-value=0.0082 Score=33.82 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=45.0
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
+|+.. ++ ...|+.+|.+ ..++++...-+..||..+..+ ...+.-+++||.|.+..-..||.
T Consensus 6 NG~~~--e~-~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQR--EV-QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEEE--CC-CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEEE--Ec-CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCc
Confidence 45534 44 5689999876 457788888888999988633 35566788899999987777773
No 236
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=95.85 E-value=0.033 Score=30.27 Aligned_cols=60 Identities=13% Similarity=0.312 Sum_probs=42.7
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+|+.+ ++ ...||.+|.+.+ ++++....+..||+....+ .-.+.-+++||.|.+..-..||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 55544 45 678999999877 4566777788999887533 2344568889999988766665
No 237
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=95.25 E-value=0.22 Score=29.28 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=40.6
Q ss_pred CEEEEEEc--CCCCHHHHHHHHHhhcCCCCCc-------------eEEEeCCEEcCCCCcc--ccCCCCCCCEEEEEEEc
Q 038333 53 KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQ-------------QRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRL 115 (120)
Q Consensus 53 ~~~~i~v~--~~~tV~~LK~~i~~~~~~~~~~-------------~~L~~~g~~L~d~~~L--~~~~i~~g~~i~v~~~~ 115 (120)
+...++++ ...||++|...+.+++.-.... ..+.-|++... .+ .++-+++||.|.+....
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~~~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEGEKDYILEDGDIISFTSTL 96 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGTGGGCBCCTTCEEEEEECT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccCCCCcCcCCCCEEEEECCC
Confidence 45667776 6789999999999887321111 12334554321 11 34568899999998877
Q ss_pred CCC
Q 038333 116 RGG 118 (120)
Q Consensus 116 ~gG 118 (120)
.||
T Consensus 97 ~GG 99 (99)
T 2qjl_A 97 HGG 99 (99)
T ss_dssp TCC
T ss_pred CCC
Confidence 776
No 238
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=95.24 E-value=0.17 Score=39.03 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=56.3
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEeC---C--EEcCCCCccccCCCCCCCEEEEEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~~---g--~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
.++.+.|..++| ++.+.+++.+|+.+|-..|+...|+.. +.+-|.+. | .-|+.+.++.+.+++.+....+.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 468899999998 678999999999999999999999864 34556552 2 3577788888887766666555544
No 239
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=95.16 E-value=0.028 Score=35.20 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 87 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~ 87 (120)
..+.|..++|+.+|+..|++.+|+|++.+||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467888999999999999999999999999984
No 240
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=95.00 E-value=0.008 Score=34.08 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=40.8
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.++++...||.+|.+.+. ++.....+..||+....+ .-+++||.|.+..-..||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 455667789999987664 566777788999988754 557889999887666665
No 241
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=94.98 E-value=0.0042 Score=42.13 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|++++.+++.|+|++++++.|-.++++..+++|.++....
T Consensus 55 GLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 55 GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp ----------------------------------------
T ss_pred CCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 6788999999999999999999999999999999987654
No 242
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=94.83 E-value=0.17 Score=28.90 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=42.1
Q ss_pred EEEEcCCCCHHHHHHHHHhhcC------C-----CCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~------~-----~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
.++++...||.+|.+.+...+. + ......+..||+...... -.+.-+++||.|.+..-..||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999988752 1 013556778887764221 234458899999888777666
No 243
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=94.73 E-value=0.14 Score=36.03 Aligned_cols=76 Identities=9% Similarity=0.009 Sum_probs=53.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC-ceEEEeC---C--EEcCCCCccccCCCCCCCEEEEE
Q 038333 39 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 39 ~~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~-~~~L~~~---g--~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
....+.+.|..++|....+.+++.+|+.+|-..|+++.|+... .+-|.+. | .-|+.++++.+.......++.+.
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 3466899999999999999999999999999999999998653 3455542 2 24677777777643333455554
Q ss_pred EE
Q 038333 113 LR 114 (120)
Q Consensus 113 ~~ 114 (120)
++
T Consensus 94 vk 95 (296)
T 3qij_A 94 VK 95 (296)
T ss_dssp ES
T ss_pred EE
Confidence 44
No 244
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=94.68 E-value=0.014 Score=35.56 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=44.4
Q ss_pred CEEEEEEeCC------CCEEEEEEcC----CCCHHHHHHHHHhhcCCCCCceEEE-eCC--E------EcCCCCc---c-
Q 038333 42 GMQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRT---L- 98 (120)
Q Consensus 42 ~m~i~v~~~~------g~~~~i~v~~----~~tV~~LK~~i~~~~~~~~~~~~L~-~~g--~------~L~d~~~---L- 98 (120)
+|+|.|+... |+...++++. ..||.+|-..+++.+. ..+-.++ -+| + .|-+++. +
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 4666666544 3445666663 3599999999988763 1122232 122 1 1212222 1
Q ss_pred -ccCCCCCCCEEEEEEEcCCC
Q 038333 99 -ADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 99 -~~~~i~~g~~i~v~~~~~gG 118 (120)
.+|-+++||.|.+...+-||
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 35778999999888777766
No 245
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.46 E-value=0.48 Score=29.39 Aligned_cols=64 Identities=28% Similarity=0.421 Sum_probs=45.4
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhc--CCC------CCceEEEe-CC---E-EcCC-------------CCccccCCCC
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLED-------------GRTLADYNIQ 104 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~--~~~------~~~~~L~~-~g---~-~L~d-------------~~~L~~~~i~ 104 (120)
++...++++-..+||.+.|++|-... +.| ++.+.|.+ .| + .|.| =.||+.|+|+
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 44567888888999999999996542 232 45666664 22 2 2543 1379999999
Q ss_pred CCCEEEEEEE
Q 038333 105 KESTLHLVLR 114 (120)
Q Consensus 105 ~g~~i~v~~~ 114 (120)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 246
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=94.30 E-value=0.31 Score=28.68 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=45.6
Q ss_pred EEEEEEeCC------CCEEEEEEcCCCCHHHHHHHHHhhcC-CCC---------Cce-------EEEeCCEEcCCCCccc
Q 038333 43 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLA 99 (120)
Q Consensus 43 m~i~v~~~~------g~~~~i~v~~~~tV~~LK~~i~~~~~-~~~---------~~~-------~L~~~g~~L~d~~~L~ 99 (120)
|+++|+... |. ..++++ ..||.+|.+.+...+. +.. ..+ .+..||+...... -.
T Consensus 4 m~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~ 80 (99)
T 2l52_A 4 AEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GL 80 (99)
T ss_dssp CEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-ST
T ss_pred eEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CC
Confidence 677777654 32 133444 6899999999988752 111 023 5667777653221 23
Q ss_pred cCCCCCCCEEEEEEEcCCC
Q 038333 100 DYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 100 ~~~i~~g~~i~v~~~~~gG 118 (120)
+.-+++||.|.+..-..||
T Consensus 81 ~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 81 ETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCEEEEECCCCCC
Confidence 4457889999888777666
No 247
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=94.19 E-value=0.33 Score=29.76 Aligned_cols=63 Identities=32% Similarity=0.506 Sum_probs=44.0
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhh--cCCC------CCceEEEe-CC---E-EcCC-------------CCccccCCCCCC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDK--EGIP------PDQQRLIF-AG---K-QLED-------------GRTLADYNIQKE 106 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~--~~~~------~~~~~L~~-~g---~-~L~d-------------~~~L~~~~i~~g 106 (120)
...+++|-..+||.+.|++|-.. .+.| ++.+.|.+ .| + .|.| =.||+.|+|++|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 34778888899999999999653 2333 34555654 22 2 2433 137999999999
Q ss_pred CEEEEEEEc
Q 038333 107 STLHLVLRL 115 (120)
Q Consensus 107 ~~i~v~~~~ 115 (120)
+++.+..|.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998764
No 248
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=94.09 E-value=0.056 Score=32.10 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=32.7
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEE
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~ 36 (120)
|++++..+++|.|.+|+...|..++++..+..|.++
T Consensus 61 g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 61 GLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp TCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 577888999999999999999999999999998764
No 249
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=93.99 E-value=0.44 Score=28.57 Aligned_cols=73 Identities=10% Similarity=0.191 Sum_probs=53.6
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE---eCCE--EcCCCCccccCCCCCCCEEEEEEEc
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~---~~g~--~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
+...|-..+.+...+.+..+.|+.+++..++++.+...+.+.|+ ++|. .|.++..--.-.+.-+..+++..|.
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 34445556777788899999999999999999999887788776 5675 4555544444446667788887763
No 250
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=93.69 E-value=0.32 Score=27.76 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
-..+.|+..+.....-+-.++++.+|+...-++ ..|-=+++.++-...=++.|+.+.++.|-+-|.
T Consensus 25 fkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 25 YKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred ceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 345789999999999999999999999887776 456667888888888889999999999988775
No 251
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=93.51 E-value=0.17 Score=29.83 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=24.0
Q ss_pred CCCCCceEEEEccEEc--CCCCCccccccccCC
Q 038333 1 GIPPDQQRLIFAGKQL--EDGRTLADYNIQKES 31 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L--~d~~~l~~y~i~~~s 31 (120)
|||+.+|+|.|.|+.| +....-.+|.-.+.+
T Consensus 48 gIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~ 80 (94)
T 4efo_A 48 KIISSNQELIYEGRRLVLEPGRLAQHFPKTTEE 80 (94)
T ss_dssp CCCGGGEEEEETTEEECCCTTCBGGGSCCCBTT
T ss_pred CCCHHHHHHHhCCCccccCCCCccccCCCCCCC
Confidence 7999999999999766 666777777655443
No 252
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=93.51 E-value=0.36 Score=28.75 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 86 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~ 86 (120)
.+.-|.|-..+|+...+.|++++|+.++.+.++.+.++.. ....|+
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv 54 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV 54 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE
Confidence 4567888889999999999999999999999999998753 344454
No 253
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=93.35 E-value=0.71 Score=35.27 Aligned_cols=86 Identities=6% Similarity=0.116 Sum_probs=68.7
Q ss_pred CCCCCceEEEEc------cEEcC-CCCCcccc--ccccCCeEEEEeecC-C-----------------CEEEEEEeC---
Q 038333 1 GIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKTL--- 50 (120)
Q Consensus 1 ~~~~~~q~l~~~------g~~L~-d~~~l~~y--~i~~~s~i~~~~~~~-~-----------------~m~i~v~~~--- 50 (120)
|+|++....+|+ ..+|+ ...|+... .+..|.+|.+..... + .+.|.++..
T Consensus 171 g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~ 250 (530)
T 2ylm_A 171 GFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIP 250 (530)
T ss_dssp TCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTST
T ss_pred CCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCC
Confidence 456666566665 46677 68899999 999999999887644 1 166766642
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
+...+.+.++...|-.++.++|+++.+++|+.+|+.
T Consensus 251 ~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~ 286 (530)
T 2ylm_A 251 NDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFF 286 (530)
T ss_dssp TCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEE
Confidence 345699999999999999999999999999999986
No 254
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=93.28 E-value=0.4 Score=27.63 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=37.7
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCE
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 90 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~ 90 (120)
++|+|.+-.. +..+.+.++++.+..+|+.+|..+..+. +.+.+.|++.
T Consensus 11 ~~~KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred CceEEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 5678888755 4689999999999999999999999994 3444445544
No 255
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=92.71 E-value=0.19 Score=29.70 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=35.9
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
|++++..++.|.|+.+..+.|-.+.++..+.+|.+++..
T Consensus 55 gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 55 GVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp TSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 678899999999999999999999999999999998754
No 256
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=92.55 E-value=0.02 Score=41.71 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=0.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 42 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~~ 42 (120)
|++++.+++.|+|+.++++.|-.++++..+++|.++....+.
T Consensus 55 G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 55 GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp ------------------------------------------
T ss_pred CCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 578899999999999999999999999999999999987543
No 257
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=92.29 E-value=0.54 Score=29.16 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=41.0
Q ss_pred EEEEcC----CCCHHHHHHHHHhhcCCCCCceEEEe--CCEEcC-----C--CCccccCCCCCCCEEEEE
Q 038333 56 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLV 112 (120)
Q Consensus 56 ~i~v~~----~~tV~~LK~~i~~~~~~~~~~~~L~~--~g~~L~-----d--~~~L~~~~i~~g~~i~v~ 112 (120)
.+.+++ .+|..+|-+.+...+|.+. .+.+.- +.+.|. | +++|.+.|+++|+.+.+.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 455654 4699999999999999864 666653 334442 2 579999999999988765
No 258
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=92.19 E-value=0.19 Score=33.80 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=37.3
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 41 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~ 41 (120)
|+|.+++++.|.|+++++..|-.+..+..++.|.+..+..+
T Consensus 55 g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 55 GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp TCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 68999999999999999999999999999999998877543
No 259
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=91.86 E-value=0.73 Score=25.05 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=40.4
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
|.+.|..++|+. .+++...|+.+|-..+....+ ....-...+|+..+-+ +-+++|+.|.+..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 567777778875 567778999999888744322 1223344688876554 4455688887764
No 260
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=91.80 E-value=1.1 Score=25.69 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhc-C--C---CCCceEEEeCC--EEcCCCCccccCCCCCCCEEEEEEE
Q 038333 54 TITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~-~--~---~~~~~~L~~~g--~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
..-+.|+..+|+.++-++++... | + |..-++..++| +.+..+.|+++.||.+-+.|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 34578999999999999998752 2 2 22356788999 8999999999999999999988754
No 261
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=91.71 E-value=0.46 Score=30.87 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=43.7
Q ss_pred EEEEcCCCCHHHHHHHHHhhcC-CC---------CCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCCC
Q 038333 56 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 120 (120)
Q Consensus 56 ~i~v~~~~tV~~LK~~i~~~~~-~~---------~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~~ 120 (120)
.++++. .||.+|.+.+...+. +. .....+..||+...... -.+.-+++||.|.+..-..||.|
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~PpVsGG~~ 89 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLFPPVAGGGF 89 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEECSCCSEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEECccccccc
Confidence 345555 899999999987742 10 23456778888876432 23456889999999888888854
No 262
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.46 E-value=1.5 Score=27.12 Aligned_cols=61 Identities=34% Similarity=0.537 Sum_probs=41.1
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhh----cCCCC----CceEEEe-CC---EEcC----------CC----CccccCCCCCC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIF-AG---KQLE----------DG----RTLADYNIQKE 106 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~----~~~~~----~~~~L~~-~g---~~L~----------d~----~~L~~~~i~~g 106 (120)
...++++-..+||.+.|++|-.. .+.|. +++.|-+ .| ..|. +. .||+.|+|++|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46788888899999999998543 25543 4455543 11 1222 11 36889999999
Q ss_pred CEEEEEE
Q 038333 107 STLHLVL 113 (120)
Q Consensus 107 ~~i~v~~ 113 (120)
+++.+.-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9997753
No 263
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=91.22 E-value=0.59 Score=27.67 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=40.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCc-----------eEEEeCC-EEcC------CCCccccCCCCCCCEEEEE
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQ-----------QRLIFAG-KQLE------DGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~-----------~~L~~~g-~~L~------d~~~L~~~~i~~g~~i~v~ 112 (120)
...+++++++|+.+|.+.+.+.-.+...+ -.|++.+ ..|. -+++|.+.|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 45789999999999999999954433222 2333332 0111 2467999999999998874
No 264
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=91.09 E-value=0.28 Score=37.49 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 87 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~ 87 (120)
..++|..++|+.+|++.|++.+|+|++.+||..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 468999999999999999999999999999874
No 265
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=90.15 E-value=3.2 Score=32.44 Aligned_cols=63 Identities=32% Similarity=0.554 Sum_probs=43.3
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhh--cCCC------CCceEEEe-C---CE-EcCCC-------------CccccCCCCCC
Q 038333 53 KTITLEVESSDTIDNVKAKIQDK--EGIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQKE 106 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~--~~~~------~~~~~L~~-~---g~-~L~d~-------------~~L~~~~i~~g 106 (120)
...+++|-..+||.+.|++|-.. .|.| ++.+.|-+ . |+ .|.|. .||+.|+|++|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 35778888899999999999632 2333 34555553 2 22 34431 47999999999
Q ss_pred CEEEEEEEc
Q 038333 107 STLHLVLRL 115 (120)
Q Consensus 107 ~~i~v~~~~ 115 (120)
+++.++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887654
No 266
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=89.97 E-value=0.71 Score=27.35 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=37.4
Q ss_pred CCCEEEEEEeCC-------CCEEEEEEcCCCCHHHHHHHHHhhcCCCC-----CceEEEeCC
Q 038333 40 RGGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAG 89 (120)
Q Consensus 40 ~~~m~i~v~~~~-------g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-----~~~~L~~~g 89 (120)
.++|.|.|...+ +..+.+.|+++.+..+|..+|..+++++. ...+|.|..
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 345777777553 45788999999999999999999998752 224676655
No 267
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=89.92 E-value=0.99 Score=27.72 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=48.3
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC------ceEEE---eCCE--EcCCCCccccCCCCCCCEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLH 110 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~------~~~L~---~~g~--~L~d~~~L~~~~i~~g~~i~ 110 (120)
.+...|-..+.+...+++..+.|+.+++..++++.+...+ .+.|+ ++|. .|.++..--.-.+.-+..++
T Consensus 9 ei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLf 88 (120)
T 2dhz_A 9 EIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLF 88 (120)
T ss_dssp CEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEE
T ss_pred cEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEE
Confidence 3444455566666788999999999999999999987554 67665 5665 45544332222344456676
Q ss_pred EEEE
Q 038333 111 LVLR 114 (120)
Q Consensus 111 v~~~ 114 (120)
+..|
T Consensus 89 vc~k 92 (120)
T 2dhz_A 89 ACTR 92 (120)
T ss_dssp EECT
T ss_pred Eeeh
Confidence 6654
No 268
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=89.27 E-value=3.3 Score=29.62 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=44.0
Q ss_pred EEEEeC-CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCE-Ec-CCCCccccCCC
Q 038333 45 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QL-EDGRTLADYNI 103 (120)
Q Consensus 45 i~v~~~-~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~-~L-~d~~~L~~~~i 103 (120)
+.+... .-....+.+.+..|+.++++.+++.++++++.|.+.+.+. .. ....+...+.-
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 334333 3456778999999999999999999999999999999883 33 34455555443
No 269
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=89.18 E-value=4.8 Score=31.37 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=48.4
Q ss_pred EEEEEEeCC---CCEEEEEEcCCCCHHHHHHHHHhhc--CC------CCCceEEEe-C---CE-EcCC------------
Q 038333 43 MQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKE--GI------PPDQQRLIF-A---GK-QLED------------ 94 (120)
Q Consensus 43 m~i~v~~~~---g~~~~i~v~~~~tV~~LK~~i~~~~--~~------~~~~~~L~~-~---g~-~L~d------------ 94 (120)
+++.|-..+ ....+++|-..+||.+.|++|-... +. .++.+-|-+ . |+ .|.|
T Consensus 234 ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wk 313 (627)
T 3ig3_A 234 LTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWK 313 (627)
T ss_dssp EEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEE
T ss_pred EEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCcee
Confidence 455555443 2467788888999999999996532 22 345565653 2 22 3433
Q ss_pred -CCccccCCCCCCCEEEEEEEc
Q 038333 95 -GRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 95 -~~~L~~~~i~~g~~i~v~~~~ 115 (120)
=.||+.|+|++|+++.++.+.
T Consensus 314 rLNTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 314 RVNSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp ECCBTTTTTCCTTCEEEEEEC-
T ss_pred EecchhhcCCCCCceEEEEecc
Confidence 137999999999999988765
No 270
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=89.02 E-value=1.8 Score=32.98 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=41.5
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC--CceEEEe
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 87 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~--~~~~L~~ 87 (120)
..++.+.|..++|....+.+++.+|+.+|-+.|+++.|+.. +.+-|++
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 34688999999999999999999999999999999999964 4566654
No 271
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=87.69 E-value=2.5 Score=33.11 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=41.5
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEe
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 87 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~ 87 (120)
..+|.+.|..++|....+.+++.+|+.+|-..|+.+.|+.. +.+-|.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35688999999999999999999999999999999999743 5566665
No 272
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=87.26 E-value=0.11 Score=37.88 Aligned_cols=41 Identities=15% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecCC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 41 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~~ 41 (120)
|++.+.+++.|+|+++++..|-.++++..+.+|.+.....+
T Consensus 64 g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 64 GKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp -----------------------------------------
T ss_pred CCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 57889999999999999999999999999999998887753
No 273
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=87.07 E-value=2.6 Score=24.26 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=42.4
Q ss_pred EEEEEeCCCC-EEEEEEcC-CCCHHHHHHHHHhhcCCCCCceEEE-eCC---EEcCCCCccccCCCCCCCEEEEEEEcCC
Q 038333 44 QIFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRLRG 117 (120)
Q Consensus 44 ~i~v~~~~g~-~~~i~v~~-~~tV~~LK~~i~~~~~~~~~~~~L~-~~g---~~L~d~~~L~~~~i~~g~~i~v~~~~~g 117 (120)
.|+-+....+ ...+.++. ..+|.+||..|.++.++-..+.-|. ++. ++-.|+..+ |..+++|.+.-.+.+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~l----IprnssViVrRvP~~ 83 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNAL----IPKNSSVIVRRIPIG 83 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCE----EETTCCEEEEEEECS
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceE----EecCCEEEEEeccCc
Confidence 3445555544 44577775 4599999999999888765556554 332 344444322 445667755544444
Q ss_pred C
Q 038333 118 G 118 (120)
Q Consensus 118 G 118 (120)
|
T Consensus 84 ~ 84 (86)
T 2c7h_A 84 G 84 (86)
T ss_dssp S
T ss_pred c
Confidence 4
No 274
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=86.94 E-value=3.2 Score=24.37 Aligned_cols=69 Identities=7% Similarity=0.053 Sum_probs=45.6
Q ss_pred CEEEEEEe--CC-CCEEEEEEcCCCCHHHHHHHHHhhc---CCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEc
Q 038333 42 GMQIFVKT--LT-GKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 115 (120)
Q Consensus 42 ~m~i~v~~--~~-g~~~~i~v~~~~tV~~LK~~i~~~~---~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~ 115 (120)
.|.|.|.. ++ .....++++..+||.++-+...-.. .+..+...+-.+|+... .+.-+++||.|.+.--+
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCCC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEecc
Confidence 35555543 22 2355678889999999998876432 34445667778888776 34446779999886443
No 275
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=86.76 E-value=2.3 Score=25.61 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=45.2
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC--------CCCCceEEEe---CCE--EcC-CCCccccCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF---AGK--QLE-DGRTLADYNIQ 104 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~--------~~~~~~~L~~---~g~--~L~-d~~~L~~~~i~ 104 (120)
..+.|.+-.++|-...++++.++|+.++|+.+.++.. -.++...+.. .+. ++. +++.|.+...-
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 4567777778998899999999999999999988733 2344444442 232 464 45788886654
No 276
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=85.44 E-value=4.5 Score=24.67 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=48.5
Q ss_pred CEEEEEEcCCCCHHHHHHHHHh-hcC-------CCCCceEEEeCCEEcC--CCCccccCCCCCCCEEEEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQD-KEG-------IPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~-~~~-------~~~~~~~L~~~g~~L~--d~~~L~~~~i~~g~~i~v~~ 113 (120)
..+.+-++++++.++|-+.+-. .++ ++.+.-.+..+|++.. .+++|++.|+..-|.|....
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~T 108 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTT 108 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEEC
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeC
Confidence 4688999999999999887744 233 5666778889999885 56899999999998886653
No 277
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=84.68 E-value=3.9 Score=23.34 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=53.3
Q ss_pred EEEEEeCCCC-EEEEEEcCCCCHHHHHHHHHhhc-C--C--CCCceEEEeCCEE--cCCCCccccCCCCCCCEEEEEE
Q 038333 44 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKE-G--I--PPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 44 ~i~v~~~~g~-~~~i~v~~~~tV~~LK~~i~~~~-~--~--~~~~~~L~~~g~~--L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
.|.....+.- ..-+.++..+|+.++-++++... | + .+.-++..++|.. +.++.++++.||++-+.|.+..
T Consensus 5 Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 5 PVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred ceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3444444332 45578999999999999998752 2 2 2246788899987 9999999999999999998864
No 278
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=84.64 E-value=3.7 Score=23.02 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=41.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
+|.|..++|+ .+.++...|+.++-..|....+-. ..--..+|+..+-+ +-+++|+.|.+..
T Consensus 7 ~i~v~tP~G~--~~~lp~GaT~~D~A~~Ih~~lg~~--~v~AkVNG~~v~L~-----~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGD--VISLPIGSTVIDFAYAIHSAVGNR--MIGAKVDGRIVPID-----YKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSC--EEEEETTCBHHHHHHHHCHHHHHT--EEEEEETTEEECTT-----CBCCTTCBEEEEE
T ss_pred eEEEECCCCC--EEEecCCCCHHHHHHHhhhhhhcc--eEEEEECCEEcCCC-----cccCCCCEEEEEc
Confidence 4677778886 456788899999988887655422 12233588777544 3456799888764
No 279
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=84.12 E-value=4.8 Score=23.82 Aligned_cols=71 Identities=23% Similarity=0.249 Sum_probs=53.8
Q ss_pred EEEEEEeCCC---CEEEEEEcCCCCHHHHHHHHHhhcCCC--CCceEEEeCC---EEcCCCCccccCCCCCCCEEEEEE
Q 038333 43 MQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 43 m~i~v~~~~g---~~~~i~v~~~~tV~~LK~~i~~~~~~~--~~~~~L~~~g---~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
+.|+|...+. ....++|..+..|+.+-.++-+...++ .++.-|.... .++.-..+|..|||+..+.+....
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 5566776553 457788888899999999998777664 4455665433 377889999999999999887764
No 280
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=84.05 E-value=1.3 Score=34.79 Aligned_cols=51 Identities=29% Similarity=0.562 Sum_probs=40.3
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCC-EEcCCCCccccC
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLADY 101 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g-~~L~d~~~L~~~ 101 (120)
..+.+.+.+.++.|+.+|+..|++.++++++.|.+++.. -.+.+......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 345677899999999999999999999999999988654 455555554443
No 281
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=82.50 E-value=5.1 Score=28.11 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=34.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~ 81 (120)
.++.+.|-..+|....+.|++++|+.+|-..++.+.+.+..
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~ 70 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYS 70 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCC
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCC
Confidence 34567777788999999999999999999999988876443
No 282
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=80.13 E-value=3.4 Score=24.74 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=40.5
Q ss_pred CCEEEEEEeCCC------CEEEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEcCCCCccccC
Q 038333 41 GGMQIFVKTLTG------KTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 41 ~~m~i~v~~~~g------~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L~d~~~L~~~ 101 (120)
..+.|.|....+ +...+-|+.+.||+++..-|..+.+++++. +-|+.++.....+.++++.
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 445555554332 124467888999999999999999987755 4555566644455666554
No 283
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.67 E-value=5.1 Score=23.30 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhhcCCCCCceEEEe--CCEEcCCCCccccCCCCCCCEEEEEE
Q 038333 63 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVL 113 (120)
Q Consensus 63 ~tV~~LK~~i~~~~~~~~~~~~L~~--~g~~L~d~~~L~~~~i~~g~~i~v~~ 113 (120)
.+..+|+.+.+..++++....+|+. +|++++|+..+..+ . ..++.++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL--p-~nT~lmvL 77 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL--G-DNTHFMIL 77 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS--C-SSEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC--C-CCCEEEEE
Confidence 4799999999999999766677764 68898877666654 2 33444443
No 284
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=79.36 E-value=8.2 Score=26.29 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=35.3
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~ 81 (120)
..+.|.|-..+|....+.|++++|..++...+..+.+++.+
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~ 73 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN 73 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC
Confidence 34667777888999999999999999999999999997654
No 285
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=78.92 E-value=5.5 Score=23.56 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHhhcCCCCC--ceEEE--eCCEEcCCCCccccCCCCCCCEEEE
Q 038333 63 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 63 ~tV~~LK~~i~~~~~~~~~--~~~L~--~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
.|..+|+.+....++++.. ..+|+ -+|++++|+..+... .++..+.+
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~nT~lmv 87 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL--PSNTKFVA 87 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS--CSCCEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC--CCCCEEEE
Confidence 4799999999999999753 35555 479999877766664 35555443
No 286
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=78.20 E-value=0.68 Score=26.14 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=25.9
Q ss_pred CCCCCceEEEEccEE-----cCCCCCccccccccCCeEEEE
Q 038333 1 GIPPDQQRLIFAGKQ-----LEDGRTLADYNIQKESTLHLV 36 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~-----L~d~~~l~~y~i~~~s~i~~~ 36 (120)
+++++.|.+++.-.+ ++.+.++.+.++.+|+.+++.
T Consensus 38 ~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 38 GFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 356667666655443 347889999999999999875
No 287
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=78.12 E-value=6.5 Score=23.97 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=35.8
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEcCCCCccccC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L~d~~~L~~~ 101 (120)
..+-|+.+.||+++...|..+..+++++ +-|+-++.....+.++++.
T Consensus 50 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 50 CKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 3467899999999999999999997765 5666677755556666553
No 288
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=78.05 E-value=8.1 Score=23.92 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=34.2
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCEEc-CCCCccccC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADY 101 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~~L-~d~~~L~~~ 101 (120)
..+-|+.+.||+++..-|.++.+++++.--++ |.+..+ ..+.++++.
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 45679999999999999999999987655444 544434 455666554
No 289
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=78.00 E-value=8.1 Score=23.36 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=34.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEcCCCCccccC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L~d~~~L~~~ 101 (120)
..+-|+.+.||+++..-|..+..++++. +-|+.++.....+.++++.
T Consensus 47 ~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 47 RKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp CEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred eEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 4567888999999999999999987755 4555566644455666554
No 290
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=76.06 E-value=2.3 Score=23.97 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCC-----CCceEEEeCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 89 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~-----~~~~~L~~~g 89 (120)
...+.|+++.+..+|..+|..+++.. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 56789999999999999999999975 3566777765
No 291
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=74.88 E-value=13 Score=23.40 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=45.1
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCC-CC--C--ceEEEeC-----------------CEE-cCCCCccccCCCCCCCEEE
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGI-PP--D--QQRLIFA-----------------GKQ-LEDGRTLADYNIQKESTLH 110 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~-~~--~--~~~L~~~-----------------g~~-L~d~~~L~~~~i~~g~~i~ 110 (120)
...|....+.|+.||-..|.+...- +. . .++++|- |.. -+|++||++.+.+.||-|.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 4678888999999999999876431 11 1 1233332 222 2478999999999999999
Q ss_pred EEEEcCC
Q 038333 111 LVLRLRG 117 (120)
Q Consensus 111 v~~~~~g 117 (120)
+.+..++
T Consensus 135 vaI~pP~ 141 (143)
T 4a6q_A 135 IAITPPN 141 (143)
T ss_dssp EEEECGG
T ss_pred EEEeCCC
Confidence 9987653
No 292
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=73.98 E-value=12 Score=22.70 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=33.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEcCCCCcccc
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLAD 100 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L~d~~~L~~ 100 (120)
..+-|+.+.||+++...|..+..+++++ +-|+-++.....+.++++
T Consensus 49 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 49 RKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 3567999999999999999999997755 444456654445555554
No 293
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=72.87 E-value=9.6 Score=22.14 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=33.1
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 90 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~ 90 (120)
..+.|.|++.+|=.++|+.+++.+++.+...+-. ..|+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 5789999999999999999999999999888544 5555
No 294
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=72.74 E-value=7.3 Score=23.97 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=34.5
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEcCCCCccccC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 101 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L~d~~~L~~~ 101 (120)
..+-|+.+.||+++...|.++..+++++ +-|+-++.....+.++++.
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 4567899999999999999999997765 4555566544455565553
No 295
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=72.35 E-value=12 Score=25.74 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=30.2
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~ 80 (120)
.+.-|.|-..+|....+.|++++|+.+|-..+.....+..
T Consensus 7 ~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~ 46 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVD 46 (256)
T ss_dssp -CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----
T ss_pred CceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCC
Confidence 3445667778889999999999999999999988877543
No 296
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=68.92 E-value=9.1 Score=21.87 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.+.|++.+|=.++|+.+++.+++.+...+-.
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 5789999999999999999999999998877654
No 297
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=66.59 E-value=16 Score=21.02 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=34.6
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCc-eEEEeCCEEc-CCCCcccc
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLAD 100 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~-~~L~~~g~~L-~d~~~L~~ 100 (120)
...+.|+.+.|++++..-|.++..+++++ +-++-+...+ ..+.++++
T Consensus 21 k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~ 69 (91)
T 4gdk_A 21 TKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGT 69 (91)
T ss_dssp CCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHH
Confidence 45688999999999999999999997664 5555566544 33555543
No 298
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=66.32 E-value=5.8 Score=28.65 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=40.2
Q ss_pred EEeCCCC----EEEEEEcCCCCHHHHHHHHHhhcCCCC-CceEEEe--C--CE--EcCCCCcccc
Q 038333 47 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--A--GK--QLEDGRTLAD 100 (120)
Q Consensus 47 v~~~~g~----~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~~L~~--~--g~--~L~d~~~L~~ 100 (120)
|..++|. ...+.+++.+|+.+|-..|+++.|+.. +.+-|.+ . +. -|+++.++.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 5556776 899999999999999999999999843 3445554 2 22 4677777754
No 299
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=65.98 E-value=16 Score=20.89 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=34.5
Q ss_pred EEEEeC-CCCEEEEEEcC--CCCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 45 IFVKTL-TGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 45 i~v~~~-~g~~~~i~v~~--~~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
+.||+. +.+...+.+++ ..+-.+|..+++....++...+.+.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 455554 44566777774 4799999999999999988888888854
No 300
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=65.90 E-value=17 Score=20.98 Aligned_cols=44 Identities=7% Similarity=0.073 Sum_probs=32.5
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEc-CCCCcccc
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 100 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L-~d~~~L~~ 100 (120)
..+.|+.+.|++++-.-|.++.++ +.+-++-+...+ ..+.++++
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~ 69 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGE 69 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHH
Confidence 457899999999999999999998 566666677544 34555543
No 301
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=65.09 E-value=12 Score=21.88 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.9
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCC
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 89 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g 89 (120)
+.+.|++.+|=.++|+.+++.+++.+...+-. ..|
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 89999999999999999999999999888654 444
No 302
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=64.69 E-value=12 Score=21.70 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=32.7
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE-eCCE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 90 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~-~~g~ 90 (120)
..+.+.|++.+|=.++|+.+++.+++.+...+-. ..|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 6789999999999999999999999999888543 5543
No 303
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=64.67 E-value=21 Score=28.32 Aligned_cols=59 Identities=10% Similarity=0.228 Sum_probs=39.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCc----------eEEEeCCE--E----c--CCCCccccCCCCCCCEEEEE
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQ----------QRLIFAGK--Q----L--EDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~----------~~L~~~g~--~----L--~d~~~L~~~~i~~g~~i~v~ 112 (120)
...+.++.+.|+.+|-+.++.+..+.... .+++|... . . +-+++|.++|+.+|+.|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 45678888899999999999864432222 23344321 0 1 12578999999999998774
No 304
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.44 E-value=15 Score=21.00 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.+.|++.+|=.++|+.+++.+++.+...+-.
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 5789999999999999999999999998877654
No 305
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=62.96 E-value=19 Score=20.96 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEc-CCCCcccc
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 100 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L-~d~~~L~~ 100 (120)
...+.|+.+.|++++..-|.++..++ .+-|+.+...+ ..+.++++
T Consensus 29 k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~ 74 (96)
T 1wz3_A 29 QSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVID 74 (96)
T ss_dssp CCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHH
T ss_pred ccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHH
Confidence 35688999999999999999999987 56665555344 34555554
No 306
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=61.06 E-value=13 Score=21.51 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=33.8
Q ss_pred CCCCCceEEEEccEEcCCCCCccccccccCCeEEEEeecC
Q 038333 1 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 40 (120)
Q Consensus 1 ~~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~ 40 (120)
|+.+++=.|.|++++||-+..+..-++..++.+.+.....
T Consensus 44 gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 44 DFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp TCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred CCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 4556777889999999999999999999999998876544
No 307
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=59.27 E-value=18 Score=20.99 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHH
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNV 68 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~L 68 (120)
..++|++..++|+.+.+++.+.+|+.+.
T Consensus 5 ~m~~V~~~~~~g~~~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 5 DKITVHFINRDGETLTTKGKIGDSLLDV 32 (108)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred ceEEEEEECCCCCEEEEEECCCChHHHH
Confidence 3457888878888889999999998654
No 308
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=58.06 E-value=14 Score=25.94 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=32.7
Q ss_pred CCEEEEEEeCCCCEEEEEEcC--CCCHHHHHHHHHhhcCCCCC---ceEEEe
Q 038333 41 GGMQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD---QQRLIF 87 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~--~~tV~~LK~~i~~~~~~~~~---~~~L~~ 87 (120)
+-+++.|..++|....++++. .+|+.+|.+ ..|++.. .+-|++
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~~~~~~FaL~~ 51 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQETQQYFTIWI 51 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCTTGGGGEEEEE
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCccccCeeEEEE
Confidence 346889999999999999999 899999943 4677542 455654
No 309
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=57.98 E-value=3.9 Score=24.58 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCC--CCceEEEeCC---EEcCCCCccccCCCCCCCEEEEE
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~--~~~~~L~~~g---~~L~d~~~L~~~~i~~g~~i~v~ 112 (120)
++|+|...+ ....++|..+..|+.+-.++-+...++ .++.-|.... .++.-..+|..|||+..+.+...
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 344444433 557788888899999999999877654 3455555332 37788899999999988876554
No 310
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=56.34 E-value=24 Score=19.73 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.8
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
|.+..++++...+++.|..|+.+--.+.-+..++.++....+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 566778888889999999999999999999999988766555
No 311
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=54.77 E-value=23 Score=21.50 Aligned_cols=37 Identities=5% Similarity=0.049 Sum_probs=27.1
Q ss_pred CEEEEEEcCC-----------CCHHHHHHHHHhhc-CCCCCceEEEeCC
Q 038333 53 KTITLEVESS-----------DTIDNVKAKIQDKE-GIPPDQQRLIFAG 89 (120)
Q Consensus 53 ~~~~i~v~~~-----------~tV~~LK~~i~~~~-~~~~~~~~L~~~g 89 (120)
....+.++.+ .|...|+.++...+ ++....+.+.|..
T Consensus 36 EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkD 84 (117)
T 2ktr_A 36 EIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRA 84 (117)
T ss_dssp EEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred cEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 4566777522 38999999999999 5666678888754
No 312
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=53.71 E-value=19 Score=22.95 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=23.9
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHH
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 71 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~ 71 (120)
...|.+.+. .+|+.+.+++++.+|+.+.-..
T Consensus 7 ~~~m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 7 SQLMRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCCEEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred CCcceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 355777776 5788899999999998876554
No 313
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=53.61 E-value=33 Score=20.36 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=44.6
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCE--EcCCCCccccCCCCCCCEEEE
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~--~L~d~~~L~~~~i~~g~~i~v 111 (120)
+.++...+...+.-++.+.-.-|-.++++..+...+...|. +|+-..+.... +|..+.+
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l---dgqrl~L 85 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV---ASQTLVL 85 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS---SSSCEEE
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh---cCcEEEE
Confidence 67788899999999999999999999999988888877665 45544555443 4444443
No 314
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=52.75 E-value=6.2 Score=24.91 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhhcCCCC--CceEEE--eCCEEcCCCCccccCCCCCCCEEEE
Q 038333 63 DTIDNVKAKIQDKEGIPP--DQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 63 ~tV~~LK~~i~~~~~~~~--~~~~L~--~~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
.+..+|+.+.+..++++. ...+|+ -+|.+++|+..+..+ .++..+.+
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL--p~nT~Lmv 132 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL--PSNTKFVA 132 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHS--CSSCBEEE
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcC--CCCCEEEE
Confidence 479999999999999965 366665 478888776655553 34444433
No 315
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=52.60 E-value=27 Score=25.52 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=37.7
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHH--hhcCC---CCCceEEEe----CC--EEcCCCCccccC
Q 038333 50 LTGKTITLEVESSDTIDNVKAKIQ--DKEGI---PPDQQRLIF----AG--KQLEDGRTLADY 101 (120)
Q Consensus 50 ~~g~~~~i~v~~~~tV~~LK~~i~--~~~~~---~~~~~~L~~----~g--~~L~d~~~L~~~ 101 (120)
++|....+.+++.+||.++-..|. .+.|+ .++.+-|.+ .+ .-|+++.+|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 778888999999999999999998 56664 334455543 12 456777777663
No 316
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=52.56 E-value=26 Score=29.28 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=46.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC--------CCCCceEEEe-C--C--EEcC-CCCccccCCCC
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--G--KQLE-DGRTLADYNIQ 104 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~--------~~~~~~~L~~-~--g--~~L~-d~~~L~~~~i~ 104 (120)
..+.|.+-.++|-...++++.++|++++|+.+.++.. ..++...+.+ + | .++. +++.|.+...-
T Consensus 50 ~~v~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~~ 127 (1092)
T 2y3a_A 50 GAISVDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPF 127 (1092)
T ss_dssp SEEEEEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCBS
T ss_pred CceEEEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeeccc
Confidence 4566777778999999999999999999999988733 2455666665 3 2 2454 45778876543
No 317
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=52.48 E-value=34 Score=20.16 Aligned_cols=27 Identities=4% Similarity=0.090 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhhcC-CCCCceEEEeCC
Q 038333 63 DTIDNVKAKIQDKEG-IPPDQQRLIFAG 89 (120)
Q Consensus 63 ~tV~~LK~~i~~~~~-~~~~~~~L~~~g 89 (120)
.|...|+.++...+. +....+.+.|..
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~D 69 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRA 69 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 379999999999974 555677888754
No 318
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=52.13 E-value=31 Score=19.67 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=43.9
Q ss_pred CEEEEEEeCCCCEEEEEEcC-CCCHHHHHHHHHhhcC----CCCCc-eEE---Ee-CCEEcCCCCccccCCCCCCCEEEE
Q 038333 42 GMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEG----IPPDQ-QRL---IF-AGKQLEDGRTLADYNIQKESTLHL 111 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~-~~tV~~LK~~i~~~~~----~~~~~-~~L---~~-~g~~L~d~~~L~~~~i~~g~~i~v 111 (120)
.|+++|+.. +....+-+.. +.||..|-++-..++. -.++. ..+ .+ +|.+|+.+..|.+. +.+.+.|..
T Consensus 2 ~MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A 79 (85)
T 2ns5_A 2 EFKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVA 79 (85)
T ss_dssp CEEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEE
T ss_pred ccEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEE
Confidence 588999965 4556676654 4599999776655543 22222 222 23 67789877777775 456666654
Q ss_pred EE
Q 038333 112 VL 113 (120)
Q Consensus 112 ~~ 113 (120)
..
T Consensus 80 ~~ 81 (85)
T 2ns5_A 80 VF 81 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 319
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=52.08 E-value=34 Score=20.17 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=31.7
Q ss_pred EEEEe-CCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeC
Q 038333 45 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 88 (120)
Q Consensus 45 i~v~~-~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~ 88 (120)
+.|+. ..|++..+.++..-+..+|..++...+|-+ +.|.|-
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~ 50 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYT 50 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEEC
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEe
Confidence 34443 357889999999999999999999999974 345554
No 320
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=51.78 E-value=32 Score=19.72 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCEEEEEEeCCCCEEEEEEcC--CCCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 41 GGMQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~--~~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
.++.+.|. ..|..+.+.++. +.|-++|...+...++++ .+.+.|-+
T Consensus 5 ~~v~lkV~-f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~D 52 (87)
T 2bkf_A 5 PQVTLNVT-FKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLD 52 (87)
T ss_dssp CCEEEEEE-ETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEEC
T ss_pred ceEEEEEE-EcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEc
Confidence 34556666 456788888865 789999999999999996 56676643
No 321
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=51.42 E-value=24 Score=23.30 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=39.7
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEe
Q 038333 40 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 87 (120)
Q Consensus 40 ~~~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~ 87 (120)
....++.|...++..+.++=-...-...|++.+...++++.+.-.+..
T Consensus 82 ~rg~~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~ 129 (191)
T 3f5r_A 82 CRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSL 129 (191)
T ss_dssp SSSEEEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTT
T ss_pred cCCcEEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeec
Confidence 456889999888988888877888899999999999999876555443
No 322
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=51.08 E-value=23 Score=22.73 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=21.5
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHH
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAK 71 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~ 71 (120)
|.|.+. .+|+.+.+++++++|+.+.-..
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 455555 5789999999999998876554
No 323
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=50.62 E-value=12 Score=21.81 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=34.6
Q ss_pred EEEE-cCCCCHHHHHHHHHhhcCCCCCceEEE------eCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 56 TLEV-ESSDTIDNVKAKIQDKEGIPPDQQRLI------FAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 56 ~i~v-~~~~tV~~LK~~i~~~~~~~~~~~~L~------~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
++-+ ....||.|+-.+|....+-.. ..-++ ++++... .++-++++|.|.++.+
T Consensus 28 pviL~~~GsTv~Dfa~~IH~di~~~f-kyA~VwG~saK~~~qrVg-----ldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 28 PVVLPYSRTTVEDFCMKIHKNLIKEF-KYALVWGLSVKHNPQKVG-----KDHTLEDEDVIQIVKK 87 (93)
T ss_dssp CEEEETTSCCHHHHHHHHCTTCTTTE-EEEEEBSTTSSSSSEEEC-----SSCCCCSSEEECEEEC
T ss_pred CEEEecCCCCHHHHHHHHHHHHHhhc-cEEEEecccccCCCEECC-----CCcEecCCCEEEEEeC
Confidence 3666 778999999999998866432 11222 2344443 3455667999988866
No 324
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=50.23 E-value=24 Score=20.46 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHH
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVK 69 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK 69 (120)
+|++...+|+.+.+++.+..|+.+.-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 57778889999999999999987744
No 325
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=50.03 E-value=56 Score=25.22 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=38.4
Q ss_pred EEeCCCC----EEEEEEcCCCCHHHHHHHHHhhcCCCC-Cce--EEEeC--C--EEcCCCCcccc
Q 038333 47 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQ--RLIFA--G--KQLEDGRTLAD 100 (120)
Q Consensus 47 v~~~~g~----~~~i~v~~~~tV~~LK~~i~~~~~~~~-~~~--~L~~~--g--~~L~d~~~L~~ 100 (120)
|...+|. ...+.+++++||.++-..+.++.++.. +.+ ++... | .-|+.+.++..
T Consensus 12 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~ 76 (656)
T 2j0j_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (656)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred EeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHH
Confidence 4445555 889999999999999999999999843 333 34333 2 24566677666
No 326
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=49.85 E-value=23 Score=22.58 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=21.7
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHH
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKA 70 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~ 70 (120)
+|.|.+. .||+.+.+++++++|+.+.-.
T Consensus 3 ~~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 3 KITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp CEEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred cceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 3566665 678889999999999888644
No 327
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=49.47 E-value=22 Score=20.25 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=24.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHh
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQD 74 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~ 74 (120)
.+.|...+|.++.++|+.++-+..-|+.|+.
T Consensus 38 mviisf~ngatfqvevpgsqh~~sqk~~~er 68 (104)
T 3chb_D 38 MAIITFKNGATFQVEVPGSQHIDSQKKAIER 68 (104)
T ss_dssp EEEEECTTCCEEEECCCCTTSCHHHHHHHHH
T ss_pred EEEEEecCCcEEEEecCcchhhhhhhhHHHH
Confidence 3556778999999999998887777766654
No 328
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=49.09 E-value=36 Score=19.48 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCCCceEEEEccEEcCCCCCccccccccCCeEEEEeec
Q 038333 2 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 39 (120)
Q Consensus 2 ~~~~~q~l~~~g~~L~d~~~l~~y~i~~~s~i~~~~~~ 39 (120)
++-+.=.++.++..|++++++.+..+.....+.+.+..
T Consensus 28 i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 28 CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 34455567889999999999999999999988877543
No 329
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=47.94 E-value=27 Score=22.27 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHH
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAK 71 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~ 71 (120)
+.|.+. .+|+.+.+++++++|+.+.-..
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 4 KIITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 345554 5789999999999998876554
No 330
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=47.37 E-value=39 Score=19.55 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=21.3
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHH
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNV 68 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~L 68 (120)
++|++..++|+.+.+++.+.+|+.+.
T Consensus 6 ~~v~~~~~~g~~~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 6 VNVVFVDRSGQRIPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCCcHHHH
Confidence 46777768899889999999998764
No 331
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=47.18 E-value=29 Score=22.16 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.|.|++.+|=.++|+.|++.+++.+...+-+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 127 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 127 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEee
Confidence 5789999999999999999999999999888644
No 332
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=45.30 E-value=41 Score=19.13 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=22.6
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHH
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKA 70 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~ 70 (120)
+++|++...+|+...+++.+.+|+.+.-.
T Consensus 3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp CEEEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred ceEEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 45677776788888999999999876543
No 333
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=43.01 E-value=40 Score=21.38 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 52 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 52 g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
...+.|.|++.+|=.++|+.++..+++.+...+-.
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 121 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTL 121 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEee
Confidence 35789999999999999999999999998887654
No 334
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=42.83 E-value=22 Score=20.58 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCcc-ccCCC
Q 038333 54 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNI 103 (120)
Q Consensus 54 ~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L-~~~~i 103 (120)
.+.+..++......+++.|++..+++++. +.++.+| .++|+
T Consensus 17 ~~~~~m~~mei~~~l~~iiae~l~~~~~~---------I~~d~~l~~dLGl 58 (101)
T 4dxe_H 17 NLYFQSNAMENFDKVKDIIVDRLGVDADK---------VTEDASFKDDLGA 58 (101)
T ss_dssp -------CTTHHHHHHHHHHHTTCCCGGG---------CCTTCBTTTTSCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHCcChhh---------CCCCCcchhhcCC
Confidence 35567777788999999999999987653 3455556 66655
No 335
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=42.49 E-value=38 Score=21.26 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.|.|+..+|=.++|+.+++.+++.+...+-.
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 113 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTL 113 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEee
Confidence 5789999999999999999999999998887654
No 336
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=42.02 E-value=40 Score=20.39 Aligned_cols=28 Identities=32% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCCCHHHH
Q 038333 41 GGMQIFVKTLTGKTITLEVESSDTIDNV 68 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~~tV~~L 68 (120)
...+|++..++|+...+++.+.+|+.+.
T Consensus 20 ~M~~Vt~~~~~G~~~~v~~~~G~tLL~a 47 (126)
T 3hui_A 20 HMAKINFVDHTGETRTVEVEEGATVMEA 47 (126)
T ss_dssp SEEEEEEECTTSCEEEEEEETTSBHHHH
T ss_pred CceEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 3457888878898899999999998764
No 337
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=39.25 E-value=29 Score=16.77 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhcCCCCC
Q 038333 65 IDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~ 81 (120)
+.+|-+.+++++|+++.
T Consensus 18 ~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 18 LAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHCCCcc
Confidence 45677788999999863
No 338
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=38.25 E-value=12 Score=25.30 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=12.1
Q ss_pred CEEEEEEEcCCCCC
Q 038333 107 STLHLVLRLRGGEF 120 (120)
Q Consensus 107 ~~i~v~~~~~gG~~ 120 (120)
-.|++++|+++|.|
T Consensus 55 ipV~vMIRPR~GdF 68 (224)
T 2bdq_A 55 ISVAVMIRPRGGNF 68 (224)
T ss_dssp CEEEEECCSSSSCS
T ss_pred CceEEEECCCCCCC
Confidence 46889999999988
No 339
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=37.24 E-value=6.8 Score=24.04 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhhcCCCCCceEEE--eCCEEcCCCCccccC
Q 038333 63 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADY 101 (120)
Q Consensus 63 ~tV~~LK~~i~~~~~~~~~~~~L~--~~g~~L~d~~~L~~~ 101 (120)
.+..+|+.+....+++. ...+|+ -+|++++|+..+...
T Consensus 54 ~SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tL 93 (122)
T 1d4b_A 54 ATRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLL 93 (122)
T ss_dssp CCSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHS
T ss_pred CCHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcC
Confidence 46899999999999994 555665 479999877655553
No 340
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=37.17 E-value=29 Score=20.02 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=22.5
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHHh
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQD 74 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~ 74 (120)
+.|...+|.++.++|+.++-+..-|+.|+.
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~er 67 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIER 67 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHH
Confidence 556678899999999988776666655543
No 341
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=36.90 E-value=46 Score=21.06 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=20.7
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHH
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKI 72 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i 72 (120)
|.+. .||+.+.+++++.+|+.+.-...
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 3444 58899999999999998876654
No 342
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=36.46 E-value=68 Score=26.92 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=43.5
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcC--------CCCCceEEEeC---C--EEcC-CCCccccCCC
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFA---G--KQLE-DGRTLADYNI 103 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~--------~~~~~~~L~~~---g--~~L~-d~~~L~~~~i 103 (120)
+.|.+-.++|-...++++.++|+.++|..+.+... ..++...+.+- + .++. +++.|.++..
T Consensus 43 i~vd~LLPnGi~i~l~v~~~~tl~~iK~~lw~~a~~~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~ 117 (1091)
T 3hhm_A 43 ILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRL 117 (1091)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTSCB
T ss_pred eEEEEEcCCCeEEEEEecCCCcHHHHHHHHHHHHHhCcchhhcCChhHeEEEEEccCceEeeeecCceeeEEeec
Confidence 67777789999999999999999999999988754 24445555431 1 2454 4456766654
No 343
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=36.16 E-value=23 Score=19.11 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=10.8
Q ss_pred ccccCCCCCCCEEEEEEE
Q 038333 97 TLADYNIQKESTLHLVLR 114 (120)
Q Consensus 97 ~L~~~~i~~g~~i~v~~~ 114 (120)
.|.+.|+.+|+.|.+.-+
T Consensus 30 rL~~lGi~~G~~v~v~~~ 47 (77)
T 3e19_A 30 KLVSMGLTPGATIQVLES 47 (77)
T ss_dssp HHHTTTCSTTCEEEEEEC
T ss_pred HHHHCCCCCCCEEEEEEe
Confidence 456666666666666544
No 344
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=34.81 E-value=19 Score=18.90 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=21.2
Q ss_pred EeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 86 IFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 86 ~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
.-+|+..-+......+||++||.+.+.+.
T Consensus 19 ~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 19 DELGRVVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp CTTCEEECCHHHHHHTTCCTTCEEEEEEE
T ss_pred CCCCEEEeCHHHHHHcCCCCCCEEEEEEE
Confidence 34566666666778889999999877664
No 345
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=34.62 E-value=42 Score=21.29 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
..+.|.|+..+|=.++|+.+++.+++.+...+-+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 123 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTL 123 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEee
Confidence 5789999999999999999999999998887654
No 346
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=34.42 E-value=25 Score=20.85 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=16.7
Q ss_pred cCCCCCCCEEEEEEEcCCCC
Q 038333 100 DYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 100 ~~~i~~g~~i~v~~~~~gG~ 119 (120)
+++|.+||.+.+++...+|+
T Consensus 68 slnI~~~D~vkIiVTVSDG~ 87 (110)
T 2xsk_A 68 SLNISPDDRVKIVVTVSDGQ 87 (110)
T ss_dssp EEECCTTCEEEEEEEEECSS
T ss_pred EEEecCCCcEEEEEEEeCCC
Confidence 45789999999999988774
No 347
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=34.11 E-value=64 Score=18.08 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.4
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHH
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAK 71 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~ 71 (120)
.++|++...++....+++++..|+.+.-..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 4 VHTITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred cEEEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 356777766677789999999998775543
No 348
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=34.09 E-value=71 Score=18.60 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=36.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
.|.+..++++...++|.+..|+.+--.+.-+..++.++....+
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 57 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 57 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEE
Confidence 4667778888889999999999999999999999987666555
No 349
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=32.99 E-value=15 Score=27.32 Aligned_cols=58 Identities=10% Similarity=0.257 Sum_probs=27.2
Q ss_pred EEEEEcCCCCHHHHHHHHHhhcC--CCCCc--------eEEEeCCE--Ec------CCCCccccCCCCCCCEEEEE
Q 038333 55 ITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--QL------EDGRTLADYNIQKESTLHLV 112 (120)
Q Consensus 55 ~~i~v~~~~tV~~LK~~i~~~~~--~~~~~--------~~L~~~g~--~L------~d~~~L~~~~i~~g~~i~v~ 112 (120)
..+.++++.|+.++-+.+..+.. +.... .+++|... .| +-+++|.+.|+.+|+.+.+.
T Consensus 343 ~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 343 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp BCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred ceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 34566667788888888888643 32212 23344321 11 12567999999999988763
No 350
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=32.85 E-value=1.3e+02 Score=21.44 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=49.0
Q ss_pred CCeEEEEeecCCCEEEEEEeCCCCEEEEEEcC-CCCHHHHHHHHHhhcCCC----CCceEEEeCCEEc--------CCCC
Q 038333 30 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIP----PDQQRLIFAGKQL--------EDGR 96 (120)
Q Consensus 30 ~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~-~~tV~~LK~~i~~~~~~~----~~~~~L~~~g~~L--------~d~~ 96 (120)
+..+.+.+....+.+|.|...=.+.-.+.+.. ..|+.+. |+..-|+. .....|.-+|+.. .+..
T Consensus 138 ~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~tl~~a---i~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~ 214 (359)
T 2j58_A 138 SPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMDA---INAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGD 214 (359)
T ss_dssp SCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCBHHHH---HHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCB
T ss_pred CCeEEEEEccCCceEEEEEceecCCeEEEeCCCCCcHHHH---HHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCC
Confidence 44555666555666777765444445667777 6777665 44444442 3466777777642 2233
Q ss_pred ccccCCCCCCCEEEEE
Q 038333 97 TLADYNIQKESTLHLV 112 (120)
Q Consensus 97 ~L~~~~i~~g~~i~v~ 112 (120)
.-.++-+++||.|+|-
T Consensus 215 ~~~~~~L~~GD~I~Vp 230 (359)
T 2j58_A 215 LTQNHLLYHGDILFIP 230 (359)
T ss_dssp GGGCCBCCTTCEEEEC
T ss_pred cccceeccCCCeEEEe
Confidence 3455678999999875
No 351
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=32.29 E-value=26 Score=19.47 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=24.7
Q ss_pred cCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCCC
Q 038333 76 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 120 (120)
Q Consensus 76 ~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~~ 120 (120)
++.|+-.+.+ .+.|...|. +++.|+.|.+.+...+|+|
T Consensus 34 l~wpaMTM~F-----~v~~~~~l~--~lk~Gd~V~F~~~~~~~~~ 71 (80)
T 2qcp_X 34 VNWPEMTMRF-----TITPQTKMS--EIKTGDKVAFNFVQQGNLS 71 (80)
T ss_dssp GTBCSEEEEE-----ECCTTCEEC--CCCTTCEEEEEEEEETTEE
T ss_pred CCCCceEEEE-----EccChhhhh--cCCCCCEEEEEEEEeCCEE
Confidence 4555544443 455555554 4899999999888777653
No 352
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=32.06 E-value=80 Score=20.24 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=28.7
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHhhcCCC--CCceEEE
Q 038333 51 TGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 86 (120)
Q Consensus 51 ~g~~~~i~v~~~~tV~~LK~~i~~~~~~~--~~~~~L~ 86 (120)
.|....+.|+..+|+.++.+.+-.++.+. |.++-|+
T Consensus 85 ~gs~k~v~VsS~tTt~eVI~~LL~KFkV~dnP~kFALy 122 (163)
T 3ddc_B 85 LDAIKQMHISSTTTVSEVIQGLLDKFMVVDNPQKFALF 122 (163)
T ss_dssp EEEEEEEEEETTCCHHHHHHHHHHHTTCCSCGGGEEEE
T ss_pred CCceEEEEEccCCcHHHHHHHHHHHhcccCChhheEEE
Confidence 46678899999999999999999999874 3455553
No 353
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=31.57 E-value=36 Score=17.35 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=9.7
Q ss_pred CCCEEEEEEEcCCCC
Q 038333 105 KESTLHLVLRLRGGE 119 (120)
Q Consensus 105 ~g~~i~v~~~~~gG~ 119 (120)
+|+++.+.-.+.||.
T Consensus 40 dgdtvtvegqleggs 54 (62)
T 2gjh_A 40 DGDTVTVEGQLEGGS 54 (62)
T ss_dssp CSSCEEEEEECCCCC
T ss_pred cCCEEEEEeEEcCCc
Confidence 456666666676664
No 354
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=31.27 E-value=85 Score=18.64 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=36.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
.|.+..++++...++|.+..|+.+--.+.-+..++.++....+
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 4677778888889999999999999999999999987666554
No 355
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=31.03 E-value=37 Score=18.86 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=15.8
Q ss_pred CccccCCCCCCCEEEEEEEcC
Q 038333 96 RTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v~~~~~ 116 (120)
+.|.+.|+.+|..|.+.-+.+
T Consensus 24 rrL~~mGl~pG~~V~Vi~~ap 44 (83)
T 2lx9_A 24 QKLLSLGMLPGSSFNVVRVAP 44 (83)
T ss_dssp HHHHHSSCCSSSEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 357788888888888876644
No 356
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=30.44 E-value=29 Score=19.69 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=24.9
Q ss_pred cCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCCC
Q 038333 76 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 120 (120)
Q Consensus 76 ~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~~ 120 (120)
++.|+-.+.+ .+.|...|. +++.|+.|.+.++..+|+|
T Consensus 42 l~wpaMTM~F-----~v~~~~~l~--~lk~Gd~V~F~~~~~~~~~ 79 (88)
T 2vb2_X 42 VNWPEMTMRF-----TITPQTKMS--EIKTGDKVAFNFVQQGNLS 79 (88)
T ss_dssp GTBCSEEEEE-----ECCTTCEEC--CCCTTCEEEEEEEEETTEE
T ss_pred CCCCceEEEE-----EcCChhhhh--cCCCCCEEEEEEEEeCCEE
Confidence 4555544443 455555554 5899999999888777654
No 357
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=30.42 E-value=31 Score=18.91 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=15.9
Q ss_pred CccccCCCCCCCEEEEEEEcC
Q 038333 96 RTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v~~~~~ 116 (120)
+.|.+.|+.+|+.|.+.-+.+
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p 46 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAP 46 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 357788888888888876644
No 358
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=29.63 E-value=75 Score=21.23 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=39.0
Q ss_pred ccccccCCeEEEEeecCCCEEEEEEeCCCCEEEEE-EcCCCCHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 24 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 24 ~y~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~-v~~~~tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
..++..+..+++.+.-.+....+|+..+.+...+. .+...+.+-+|+.+....+...+..+-...|
T Consensus 49 Sh~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~~~~~pG 115 (208)
T 2qwv_A 49 AQSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQPG 115 (208)
T ss_dssp SSSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEEEETT
T ss_pred hccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccccccCCC
Confidence 35678888999888765444455554444555555 5555677888888887655444444444444
No 359
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=29.59 E-value=34 Score=17.36 Aligned_cols=18 Identities=11% Similarity=0.455 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHhhcCCCC
Q 038333 62 SDTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~ 80 (120)
..||.+||..+.++ |++.
T Consensus 12 klkV~eLK~eLk~R-gL~~ 29 (50)
T 1zrj_A 12 RLKVNELREELQRR-GLDT 29 (50)
T ss_dssp GSCHHHHHHHHHHT-TCCC
T ss_pred HCcHHHHHHHHHHc-CCCC
Confidence 56999999988766 6665
No 360
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=29.54 E-value=76 Score=17.53 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCEEEEEEcCCCCHHHHH
Q 038333 43 MQIFVKTLTGKTITLEVESSDTIDNVK 69 (120)
Q Consensus 43 m~i~v~~~~g~~~~i~v~~~~tV~~LK 69 (120)
.+|++...+| ...+++++.+|+.+.-
T Consensus 2 ~~v~~~~~~g-~~~~~~~~g~tlL~a~ 27 (95)
T 1frr_A 2 YKTVLKTPSG-EFTLDVPEGTTILDAA 27 (95)
T ss_dssp EEEEEEETTE-EEEEEECTTCCHHHHH
T ss_pred eEEEEEeCCC-cEEEEeCCCCcHHHHH
Confidence 4566765666 6788999999987654
No 361
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=29.49 E-value=17 Score=25.20 Aligned_cols=14 Identities=43% Similarity=0.945 Sum_probs=12.1
Q ss_pred CEEEEEEEcCCCCC
Q 038333 107 STLHLVLRLRGGEF 120 (120)
Q Consensus 107 ~~i~v~~~~~gG~~ 120 (120)
-.|++++|+++|.|
T Consensus 52 ipv~vMIRPR~GdF 65 (256)
T 1twd_A 52 IPVHPIIRPRGGDF 65 (256)
T ss_dssp SCEEEBCCSSSSCS
T ss_pred CceEEEECCCCCCC
Confidence 35899999999988
No 362
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=29.29 E-value=36 Score=17.35 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHhhcCCCC
Q 038333 62 SDTIDNVKAKIQDKEGIPP 80 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~ 80 (120)
..||.+||+.+..+ |++.
T Consensus 7 kltV~eLK~~Lk~R-GL~~ 24 (51)
T 1h1j_S 7 SLTVVQLKDLLTKR-NLSV 24 (51)
T ss_dssp GCCHHHHHHHHHHT-TCCC
T ss_pred HCcHHHHHHHHHHc-CCCC
Confidence 56999999977765 6765
No 363
>3q1c_A LEE-encoded effector ESPG; VIRA fold, virulence factor, PAK recruitment and activation, activated kinase, signaling protein; 1.60A {Escherichia coli O127} PDB: 4fma_A 4fmd_A* 4fme_A* 4fmc_A* 3pcr_A* 3pcs_A
Probab=29.29 E-value=1.5e+02 Score=20.90 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=31.2
Q ss_pred ccccCCeEEEEeecCCCEEEEEEeCCCCEEEEEEcCC
Q 038333 26 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 62 (120)
Q Consensus 26 ~i~~~s~i~~~~~~~~~m~i~v~~~~g~~~~i~v~~~ 62 (120)
..-.++.+.+.++...-+++.|..++++...+....+
T Consensus 60 ~fsDGSsLrIsVtkSeliE~~I~tpd~~ki~v~LEsn 96 (360)
T 3q1c_A 60 RFSDGSSLRISVTNSESIEAEIRTPDNEKITVLLESN 96 (360)
T ss_dssp ECTTSCEEEEEEETTCCEEEEEECTTCCEEEEEECCC
T ss_pred hccCCceEEEEeeccceEEEEEEccCCceeEEecccc
Confidence 4567899999999999999999999998887766654
No 364
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=28.88 E-value=77 Score=18.01 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHH
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVK 69 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK 69 (120)
+|++...+|....+++.+.+|+.+.-
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 46665678888899999999986643
No 365
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=28.86 E-value=70 Score=18.21 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=19.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHH
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNV 68 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~L 68 (120)
+|++...+|....+++.+.+|+.+.
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~a 26 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEA 26 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 4666567888889999999998654
No 366
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=28.86 E-value=56 Score=18.99 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFA 88 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~ 88 (120)
.+.|-+.+++..|+|++++-+.|.
T Consensus 76 s~~i~~~l~~~Lgi~~~riyI~f~ 99 (114)
T 3djh_A 76 SKLLCGLLAERLRISPDRVYINYY 99 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCcCcceEEEEEE
Confidence 567778888999999999988764
No 367
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=28.29 E-value=70 Score=18.10 Aligned_cols=42 Identities=12% Similarity=0.313 Sum_probs=29.9
Q ss_pred HHhhcCCCCCceEEEeCCEEcCCCCccccC--CCCCCCEEEEEE
Q 038333 72 IQDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVL 113 (120)
Q Consensus 72 i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~--~i~~g~~i~v~~ 113 (120)
.+++.|+.+.+.-+..+|+.+.+-..+... ....|+.+.+.+
T Consensus 49 ~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v 92 (105)
T 2i4s_A 49 LFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92 (105)
T ss_dssp HHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEE
Confidence 344669999999999999999866554432 125678887766
No 368
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=28.00 E-value=38 Score=20.02 Aligned_cols=29 Identities=31% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEeCCCCEEEEEEcCCCCHHHHHHHHH
Q 038333 45 IFVKTLTGKTITLEVESSDTIDNVKAKIQ 73 (120)
Q Consensus 45 i~v~~~~g~~~~i~v~~~~tV~~LK~~i~ 73 (120)
+.|...+|.++.++|+.++-+..-|+.|+
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~e 66 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIE 66 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHH
Confidence 55667889999999998776555554443
No 369
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=27.64 E-value=23 Score=17.87 Aligned_cols=28 Identities=4% Similarity=0.073 Sum_probs=19.1
Q ss_pred eCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 87 FAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 87 ~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
-+|+..-+......+|++.||.+.+.+.
T Consensus 10 ~kgqi~IPk~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 10 RNYQVTIPAKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp SSSCBCCCHHHHHHSCCCTTCEEEEEEC
T ss_pred CCCEEEeCHHHHHHcCcCCCCEEEEEEE
Confidence 3455444555677888999998877653
No 370
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=27.48 E-value=38 Score=18.68 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=15.4
Q ss_pred ccccCCCCCCCEEEEEEEcC
Q 038333 97 TLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 97 ~L~~~~i~~g~~i~v~~~~~ 116 (120)
.|.+.|+.+|..|.+.-+.+
T Consensus 30 rL~~lGl~pG~~v~V~~~~p 49 (85)
T 3mhx_A 30 RLRELGFVKGEEVRMVAKGP 49 (85)
T ss_dssp HHHHTTCCTTCEEEEEESCS
T ss_pred HHHHCCCCCCCEEEEEEeCC
Confidence 57888888888888876654
No 371
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=27.46 E-value=60 Score=19.06 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
.+.|-+.+++..|+|++++-+.|..
T Consensus 77 s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 77 SAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 5677788889999999999887643
No 372
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=27.39 E-value=25 Score=23.26 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCHHHHHHHHHhhcCCCCCceE
Q 038333 53 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 84 (120)
Q Consensus 53 ~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~ 84 (120)
..+.+.|++.+|=.++|+.|++.+++.+...+
T Consensus 132 NkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVN 163 (198)
T 3bbo_V 132 NSLLFTVDVRADKKMIREAISNFFGVKVRKVN 163 (198)
T ss_dssp CEECCEECTTCCHHHHHHTTTTTSCCCEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeEEE
Confidence 57899999999999999999999999887774
No 373
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=27.37 E-value=32 Score=18.30 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=16.0
Q ss_pred CccccCCCCCCCEEEEEEEcC
Q 038333 96 RTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v~~~~~ 116 (120)
+.|.+.|+.+|+.|.+.-+.+
T Consensus 25 ~rL~~lGl~~G~~v~v~~~~p 45 (75)
T 2h3j_A 25 QRLFSMGLLPGAALRVVRIAP 45 (75)
T ss_dssp HHHHHHTCCTTCEEEEEECCT
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 357788888898888876644
No 374
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=26.87 E-value=64 Score=18.67 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
.+.|-+.+++..|+|+++..+.|..
T Consensus 77 ~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 77 AAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEe
Confidence 5677777888999999999887743
No 375
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=26.73 E-value=55 Score=18.29 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=28.4
Q ss_pred CHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEE
Q 038333 64 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 114 (120)
Q Consensus 64 tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~ 114 (120)
|-++-+ .+-+++++..+.+ .+.+.++-....+|.+.|+.|.+.-+
T Consensus 16 s~eEk~-~lL~~y~i~~~qL-----PrI~~~DPvar~~G~k~GdVvkI~R~ 60 (78)
T 1hmj_A 16 PKEEVE-EILKRYNIKIQQL-----PKIYEDDPVIQEIGAKEGDVVRVIRK 60 (78)
T ss_pred CHHHHH-HHHHHcCCCHHHC-----CeeeCcCHhhHHhCCCCCCEEEEEEC
Confidence 444444 4445556654433 23455566678889999999988655
No 376
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=26.56 E-value=95 Score=17.68 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=36.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
.|.+..++++...++|.+..|+.+--.+..+..++.++....+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 4566778888899999999999999999999999988766665
No 377
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=26.39 E-value=40 Score=18.71 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=15.9
Q ss_pred CccccCCCCCCCEEEEEEEcC
Q 038333 96 RTLADYNIQKESTLHLVLRLR 116 (120)
Q Consensus 96 ~~L~~~~i~~g~~i~v~~~~~ 116 (120)
+.|.+.|+.+|+.|.+.-+.+
T Consensus 29 ~rL~~mGl~pG~~V~V~~~~p 49 (86)
T 2k4y_A 29 RKIMDMGIVRGTEIYIEGKAP 49 (86)
T ss_dssp HHHHHHTCCTTCEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 357788888888888876644
No 378
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=25.97 E-value=51 Score=17.06 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHhhcCCCCC
Q 038333 62 SDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~ 81 (120)
..||.+||+.+..+ |++..
T Consensus 12 klkV~eLK~~L~~r-GL~~~ 30 (55)
T 2do1_A 12 KLKLAELKQECLAR-GLETK 30 (55)
T ss_dssp TSCHHHHHHHHHHH-TCCCC
T ss_pred HCcHHHHHHHHHHc-CCCCC
Confidence 57999999866654 77653
No 379
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=25.37 E-value=26 Score=19.01 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=12.6
Q ss_pred cccCCCCCCCEEEEEEEcCCC
Q 038333 98 LADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 98 L~~~~i~~g~~i~v~~~~~gG 118 (120)
...+||+.||.+.+.+.-.+|
T Consensus 34 ~kaLgIk~gD~fel~ve~kdg 54 (68)
T 3o27_A 34 AEALDIKPDDTFILNMEQKDG 54 (68)
T ss_dssp HHHTTCCTTCCEEEEEEEETT
T ss_pred HHHhCCCCCCEEEEEEecCCC
Confidence 455666666666666654444
No 380
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.28 E-value=1.1e+02 Score=17.97 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=33.5
Q ss_pred CCEEEEEEeCCCCEEEEEEcC--CCCHHHHHHHHHhhcCCCCCceEEEe
Q 038333 41 GGMQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 87 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~--~~tV~~LK~~i~~~~~~~~~~~~L~~ 87 (120)
.++.+.|.. .|..+.+.|+. +.|-++|...+...++++ .+.+.|
T Consensus 13 ~~v~lkV~f-~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY 58 (101)
T 1wj6_A 13 PQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKY 58 (101)
T ss_dssp SCEEEEEEE-TTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEE
T ss_pred ccEEEEEEE-cCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEE
Confidence 345666664 46788888865 789999999999999996 445555
No 381
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=24.78 E-value=50 Score=18.33 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHhhcCCCCC
Q 038333 62 SDTIDNVKAKIQDKEGIPPD 81 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~ 81 (120)
..||.+||+.+.++ |++..
T Consensus 28 klkVaeLK~eLk~R-GL~~s 46 (75)
T 2kvu_A 28 DMKVAELKQELKLR-SLPVS 46 (75)
T ss_dssp TSCHHHHHHHHHHT-TCCCC
T ss_pred HCcHHHHHHHHHHc-CCCCC
Confidence 57999999977766 67653
No 382
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=24.67 E-value=66 Score=19.47 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
.+.|-+.+++..|+|++++-+.|..
T Consensus 98 s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 98 TSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEE
Confidence 5778888899999999999887754
No 383
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=24.65 E-value=72 Score=19.27 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
.+.|-+.+++..|+|++++-+.|..
T Consensus 98 s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 98 TPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEE
Confidence 5778888889999999999887754
No 384
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=24.09 E-value=77 Score=18.12 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFA 88 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~ 88 (120)
...+-+.+++..|+|+++..+.+.
T Consensus 76 ~~~i~~~l~~~lgi~~~~v~I~~~ 99 (113)
T 1hfo_A 76 SAKLFDHLNTKLGIPKNRMYIHFV 99 (113)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEE
Confidence 555666778889999999988764
No 385
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=24.08 E-value=77 Score=18.23 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFA 88 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~ 88 (120)
...+-+.+++..|+|+++..+.+.
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~ 100 (115)
T 1uiz_A 77 TKLLCDILTKQLNIPANRVYINYY 100 (115)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCcCcceEEEEEE
Confidence 556666778889999999988764
No 386
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=24.01 E-value=29 Score=20.24 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHhhcCCCCCce
Q 038333 62 SDTIDNVKAKIQDKEGIPPDQQ 83 (120)
Q Consensus 62 ~~tV~~LK~~i~~~~~~~~~~~ 83 (120)
..|+.++.+.+++.+|++++++
T Consensus 4 ~it~~~I~~~Va~~f~v~~~dl 25 (101)
T 3pvv_A 4 MISAATIMAATAEYFDTTVEEL 25 (101)
T ss_dssp -CCHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHCCCHHHH
Confidence 4689999999999999988764
No 387
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=23.87 E-value=27 Score=19.99 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.4
Q ss_pred CHHHHHHHHHhhcCCCCCce
Q 038333 64 TIDNVKAKIQDKEGIPPDQQ 83 (120)
Q Consensus 64 tV~~LK~~i~~~~~~~~~~~ 83 (120)
|+.++.+.+++.+|++++++
T Consensus 2 t~~~I~~~Va~~f~i~~~dl 21 (94)
T 1j1v_A 2 TIDNIQKTVAEYYKIKVADL 21 (94)
T ss_dssp CHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHH
Confidence 68899999999999988765
No 388
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=23.32 E-value=86 Score=19.53 Aligned_cols=76 Identities=11% Similarity=0.194 Sum_probs=50.5
Q ss_pred CCCEEEEEEe-CCCCEEEEEEcCCCCHHHHHHHHHhhcC--CCCCceEEEeCCEEcCCCCccccCCC-CCCCEEEEEEEc
Q 038333 40 RGGMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 115 (120)
Q Consensus 40 ~~~m~i~v~~-~~g~~~~i~v~~~~tV~~LK~~i~~~~~--~~~~~~~L~~~g~~L~d~~~L~~~~i-~~g~~i~v~~~~ 115 (120)
.+-+...+.. .+|+.+.+--. .=+.|..-++.... .+-++++|..+|..=.+-..+.+..+ .++|++.+.+..
T Consensus 21 ~GLipaIvQd~~tg~VLMlayM---N~EAl~~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q 97 (138)
T 1zps_A 21 EDLIIAVAQDHETGEVLMVAYM---NREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQ 97 (138)
T ss_dssp CCCEEEEEEETTTCCEEEEEEE---CHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEE
T ss_pred CCcEEEEEEECCCCCEEEEEec---CHHHHHHHHhcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEe
Confidence 3456666666 46777766532 35667777766655 35678899999865444444555444 689999999988
Q ss_pred CCC
Q 038333 116 RGG 118 (120)
Q Consensus 116 ~gG 118 (120)
.|+
T Consensus 98 ~G~ 100 (138)
T 1zps_A 98 EGG 100 (138)
T ss_dssp SSC
T ss_pred cCC
Confidence 775
No 389
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=23.18 E-value=82 Score=18.10 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFA 88 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~ 88 (120)
+..+-+.+++..|+|+++..+.+.
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~ 100 (115)
T 2xcz_A 77 SELVCGHIEQNLGIPADRIYIGFE 100 (115)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEE
Confidence 677778888899999999988764
No 390
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=22.69 E-value=86 Score=17.95 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
...+-+.+++..|+|+++..+.+..
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 77 TSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 6677778888999999999887653
No 391
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=22.66 E-value=83 Score=19.07 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=22.0
Q ss_pred CHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 64 TIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 64 tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
-.+.|-+.+++..|+|++++-+.|..
T Consensus 97 ~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 97 ISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhcccCccEEEEEecc
Confidence 36788889999999999999888754
No 392
>3u2a_A Ggdef family protein; phosphodiesterase, proteolysis, cell-cycle, CLPXP, cyclic DI hydrolase; 1.70A {Caulobacter vibrioides}
Probab=22.56 E-value=78 Score=18.81 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=14.0
Q ss_pred CCCCEEEEEEEcCCCC
Q 038333 104 QKESTLHLVLRLRGGE 119 (120)
Q Consensus 104 ~~g~~i~v~~~~~gG~ 119 (120)
.+|+.|.+..|++|++
T Consensus 79 ~~G~EiavRlRmRG~~ 94 (129)
T 3u2a_A 79 EPGSEVVARFRVRGGE 94 (129)
T ss_dssp CTTCEEEEEEEBTTSC
T ss_pred CCCCeeEEEEEeccCc
Confidence 5799999999999984
No 393
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=22.15 E-value=1.3e+02 Score=17.57 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=43.6
Q ss_pred CCEEEEEEeCCCCEEEEEEcCC-CCHHHHHHHHHhh------cC--------CCC---Cce--EEEeCCEEcCCCCcccc
Q 038333 41 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDK------EG--------IPP---DQQ--RLIFAGKQLEDGRTLAD 100 (120)
Q Consensus 41 ~~m~i~v~~~~g~~~~i~v~~~-~tV~~LK~~i~~~------~~--------~~~---~~~--~L~~~g~~L~d~~~L~~ 100 (120)
.+++|.|...++..-.+.+++. .|+.++-+..... +| +.+ ++. .+.-+|+.+. .-..+
T Consensus 7 k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~--~Ga~~ 84 (101)
T 3u7z_A 7 KHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN--TSADQ 84 (101)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC--SCGGG
T ss_pred eEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh--hchhh
Confidence 4578888888887766666643 4676665544311 11 111 111 1224666664 45788
Q ss_pred CCCCCCCEEEEEEE
Q 038333 101 YNIQKESTLHLVLR 114 (120)
Q Consensus 101 ~~i~~g~~i~v~~~ 114 (120)
|-+++|+.|.+...
T Consensus 85 ~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 85 TPVSDGDAFELTLK 98 (101)
T ss_dssp CBCCTTCEEEEEEE
T ss_pred eEecCCCEEEEEEe
Confidence 99999999987654
No 394
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=21.86 E-value=89 Score=18.39 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=21.2
Q ss_pred CHHHHHHHHHhhcCCCCCceEEEeCC
Q 038333 64 TIDNVKAKIQDKEGIPPDQQRLIFAG 89 (120)
Q Consensus 64 tV~~LK~~i~~~~~~~~~~~~L~~~g 89 (120)
=+..|-+.+++..|+|+++..+.+..
T Consensus 76 l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 76 LADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 37778888899999999999887644
No 395
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=21.64 E-value=1.3e+02 Score=17.46 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=38.7
Q ss_pred CEEEEEEeCCCCEEEEEEcCCCCHHHHHHHHHhhcCCCCCceEEE
Q 038333 42 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 86 (120)
Q Consensus 42 ~m~i~v~~~~g~~~~i~v~~~~tV~~LK~~i~~~~~~~~~~~~L~ 86 (120)
...|.+..++++...+++.+..|+.+--.+.-+..++.++....+
T Consensus 17 ~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 17 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred ccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 347778889998889999999999999999999999988766665
No 396
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=21.33 E-value=90 Score=15.54 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCCCCceEEEeC
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIFA 88 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~~ 88 (120)
..+|-+.+++..|+|++...+.+.
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEE
Confidence 556666777889999998876653
No 397
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=21.10 E-value=37 Score=18.13 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=12.2
Q ss_pred ccccCCCCCCCEEEEEEE
Q 038333 97 TLADYNIQKESTLHLVLR 114 (120)
Q Consensus 97 ~L~~~~i~~g~~i~v~~~ 114 (120)
.|.+.|+.+|+.|.+.-+
T Consensus 25 rL~~lGl~pG~~v~v~~~ 42 (75)
T 2gcx_A 25 KLLSLGMLPGSSFHVVRV 42 (75)
T ss_dssp HHTTTTCCSSEEEEECCC
T ss_pred HHHHCCCCCCCEEEEEEe
Confidence 467777777777766544
No 398
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=21.08 E-value=1.1e+02 Score=16.95 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=18.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCCHHHHHHH
Q 038333 44 QIFVKTLTGKTITLEVESSDTIDNVKAK 71 (120)
Q Consensus 44 ~i~v~~~~g~~~~i~v~~~~tV~~LK~~ 71 (120)
+|++...+| ...+++++.+|+.+.-..
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 455655555 578899999998765433
No 399
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.97 E-value=65 Score=13.77 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=9.0
Q ss_pred CHHHHHHHHHhh
Q 038333 64 TIDNVKAKIQDK 75 (120)
Q Consensus 64 tV~~LK~~i~~~ 75 (120)
.++.||++|++.
T Consensus 15 kiaalkqkiasl 26 (28)
T 3ra3_A 15 KIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 578888888763
No 400
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=20.84 E-value=90 Score=15.35 Aligned_cols=23 Identities=9% Similarity=0.390 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhcCCCCCceEEEe
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIF 87 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~ 87 (120)
...+-+.+.+.+|+|+++..+.+
T Consensus 20 ~~~i~~~l~~~lg~~~~~v~V~i 42 (61)
T 2opa_A 20 VEKVTEAVKETTGASEEKIVVFI 42 (61)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEE
Confidence 44555566777899998887665
No 401
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=20.68 E-value=1.1e+02 Score=16.40 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=29.9
Q ss_pred HhhcCCCCCceEEEeCCEEcCCC--CccccCCCCCCCEEEEEEEcCCC
Q 038333 73 QDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRGG 118 (120)
Q Consensus 73 ~~~~~~~~~~~~L~~~g~~L~d~--~~L~~~~i~~g~~i~v~~~~~gG 118 (120)
+...|+.+.+.-+..+|..+.+. ..+..+=-..+..+.+.+.-.+.
T Consensus 41 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 88 (90)
T 2he4_A 41 AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 88 (90)
T ss_dssp HHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCC
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCC
Confidence 45678889999999999988764 22222211237788887764443
No 402
>1f15_A Coat protein; beta barrel, icosahedral virus; 3.20A {Cucumber mosaic virus} SCOP: b.121.4.5
Probab=20.55 E-value=74 Score=20.99 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=32.9
Q ss_pred EccEEcCCCCCccccccccCCeEEEEeecC----CCEEEEEEeC
Q 038333 11 FAGKQLEDGRTLADYNIQKESTLHLVLRLR----GGMQIFVKTL 50 (120)
Q Consensus 11 ~~g~~L~d~~~l~~y~i~~~s~i~~~~~~~----~~m~i~v~~~ 50 (120)
+.|+.|.--..+.+|.-+.-|.+.+.+.+. ++++++++..
T Consensus 85 sfGqRL~lPvpVse~pKK~vScvQ~RlNPsPkFdStvWVtlRkl 128 (218)
T 1f15_A 85 YYGKRLLLPDSVTEYDKKLVSRLQIRVNPLPKFDSTVWVTVRKV 128 (218)
T ss_dssp EEEEECCCCHHHHTTTTSEEEEEEEEEEECTTCCSCEEEEEEEC
T ss_pred cccceEeeccchhhcccccceeEEEecCCCcccCcceEEEEecc
Confidence 457899999999999999999999999885 4577777654
No 403
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=20.54 E-value=92 Score=15.34 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcCCCCCceEEEe
Q 038333 65 IDNVKAKIQDKEGIPPDQQRLIF 87 (120)
Q Consensus 65 V~~LK~~i~~~~~~~~~~~~L~~ 87 (120)
...+-+.+.+.+|+|+++..+.+
T Consensus 20 ~~~i~~~l~~~lg~p~~~v~v~i 42 (62)
T 1otf_A 20 IRQVSEAMANSLDAPLERVRVLI 42 (62)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEE
Confidence 44455566777899998887654
No 404
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=20.47 E-value=1.4e+02 Score=17.29 Aligned_cols=51 Identities=6% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhhcCCCCCceEEEeCCEEcCCCCccccCCCCCCCEEEEEEEcCCCC
Q 038333 63 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 119 (120)
Q Consensus 63 ~tV~~LK~~i~~~~~~~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~v~~~~~gG~ 119 (120)
.=..++-+.+++.+|.|++.+.+.... +..+. ++-.....+++.++..||+
T Consensus 18 ~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~-~~g~~~~~~~i~I~~~~g~ 68 (119)
T 2os5_A 18 NFEERLTDLLAESMNKPRNRIAIEVLA-----GQRIT-HGASRNPVAVIKVESIGAL 68 (119)
T ss_dssp THHHHHHHHHHHHHTCCGGGCEEEEEC-----SCCCC-BTTBCSSCEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHCcChHHEEEEEEC-----CccEE-EcCCCCCeEEEEEEEecCC
Confidence 347788888999999999988776532 11111 2233356677888877763
Done!