BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038334
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTP 54
T S +L +D + DERI+ + TNH KLD L+RPG +DV ++ TP
Sbjct: 323 TFSGLLNALDGV--TSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATP 373
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
T S +L +D + G RI+ + TNH KLD L+RPG +D+ I + C+
Sbjct: 349 TFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCS 398
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYC 52
TLS +L +D ++ G RI+I+ TNH LD L+R G +D+ I S C
Sbjct: 93 TLSGILNSLDGIFNSEG--RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNC 141
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
T S +L +D + + RI+ + TNH +LD L+RPG +DV ++ +CT
Sbjct: 308 TFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
T S +L +D + + RI+ + TNH +LD L+RPG +D+ ++ YC+
Sbjct: 308 TFSGLLNALDGV--ASTEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCS 357
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTP 54
T S +L +D + +E I + TNH KLD ++RPG +D + + TP
Sbjct: 341 TFSGLLNALD--GVTSSEETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNATP 391
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
T S +L +D + + RI+ + TNH +LD L+RPG +D+ ++ +C+
Sbjct: 308 TFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCS 357
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
T S +L +D + + RI+ + TN+ +LD L+RPG +D+ ++ YC+
Sbjct: 308 TFSGLLNALDGV--ASTEARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCS 357
>sp|Q7TT47|SPG7_RAT Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1
Length = 744
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
TL+++L +D + G D I++ TN LD L+RPG +D H+ + T
Sbjct: 432 TLNQLLVEMDGM--GTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPT 481
>sp|Q3ULF4|SPG7_MOUSE Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1
Length = 781
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
TL+++L +D + G D I++ TN LD L+RPG +D H+ + T
Sbjct: 432 TLNQLLVEMDGM--GTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPT 481
>sp|Q9UQ90|SPG7_HUMAN Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2
Length = 795
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
TL+++L +D + G D I++ TN LD L+RPG +D H+ + T
Sbjct: 432 TLNQLLVEMDGM--GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 481
>sp|P46508|YME1_SCHMA ATP-dependent zinc metalloprotease YME1 homolog OS=Schistosoma
mansoni PE=2 SV=1
Length = 662
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIV--KTNHKAKLDLTLLRPGHMDVHIHMS 50
T++++L +D G+ + +IV TN LD LLRPG DV IH+S
Sbjct: 286 TINQLLAEMD----GFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVS 332
>sp|P0C5C0|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis GN=ftsH PE=1 SV=1
Length = 760
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
TL+++L +D G+GD I+I TN LD LLRPG D I +S
Sbjct: 285 TLNQLLVEMD----GFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVS 331
>sp|A5U8T5|FTSH_MYCTA ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3
SV=1
Length = 760
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
TL+++L +D G+GD I+I TN LD LLRPG D I +S
Sbjct: 285 TLNQLLVEMD----GFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVS 331
>sp|Q9CD58|FTSH_MYCLE ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium leprae
(strain TN) GN=ftsH PE=3 SV=1
Length = 787
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
TL+++L +D G+GD I+I TN LD LLRPG D I +S
Sbjct: 285 TLNQLLVEMD----GFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVS 331
>sp|P0A4V9|FTSH_MYCBO ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ftsH PE=3 SV=1
Length = 760
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
TL+++L +D G+GD I+I TN LD LLRPG D I +S
Sbjct: 285 TLNQLLVEMD----GFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVS 331
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCT 53
T S +L +D + + RI+ + TN +LD L+RPG +D+ ++ +C+
Sbjct: 309 TFSGLLNALDGV--ASSEARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCS 358
>sp|P73179|FTSH1_SYNY3 ATP-dependent zinc metalloprotease FtsH 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH1 PE=2 SV=1
Length = 665
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSY 51
TL+++LT +D G I+I TN LDL LLRPG D + + Y
Sbjct: 333 TLNQLLTEMDGFEGNSG--IIVIAATNRPDVLDLALLRPGRFDRQVTVDY 380
>sp|Q4L3G8|FTSH_STAHJ ATP-dependent zinc metalloprotease FtsH OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=ftsH PE=3 SV=1
Length = 727
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHIHM 49
TL+++L +D G+G+ IMI TN LD LLRPG D I +
Sbjct: 287 TLNQLLVEMD----GFGENEGIIMIAATNRPDILDPALLRPGRFDRQIQV 332
>sp|B3QZS3|FTSH2_PHYMT ATP-dependent zinc metalloprotease FtsH 2 OS=Phytoplasma mali
(strain AT) GN=ftsH2 PE=3 SV=1
Length = 686
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
TL+++L +D G I++ TN LDL + RPG D H H++
Sbjct: 353 TLNQLLVEMDGFTKNIG--VIVMAATNQPESLDLAVTRPGRFDRHFHIT 399
>sp|D1BHU2|ARC_SANKS Proteasome-associated ATPase OS=Sanguibacter keddieii (strain ATCC
51767 / DSM 10542 / NCFB 3025 / ST-74) GN=arc PE=3 SV=1
Length = 581
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65
D I+I +N + +D +LRPG +DV I + P G R + YL
Sbjct: 375 DNVIVIGASNREDMIDPAILRPGRLDVKIKIERPDPEGAREIFAKYL 421
>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1
Length = 854
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L +D G+GD I+I TN LD LLRPG D I
Sbjct: 289 TLNQLLVEMD----GFGDRTGIILIAATNRPDILDPALLRPGRFDRQI 332
>sp|P40341|YTA12_YEAST Mitochondrial respiratory chain complexes assembly protein YTA12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YTA12 PE=1 SV=2
Length = 825
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 2 TLSRMLTFIDRLWLGY--GDERIMIVKTNHKAKLDLTLLRPGHMDVHIHM 49
TL++ML +D G+ D +++ TN LD LLRPG D HI++
Sbjct: 471 TLNQMLVEMD----GFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINI 516
>sp|Q6M2F0|FTSH_CORGL ATP-dependent zinc metalloprotease FtsH OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=ftsH PE=3 SV=1
Length = 853
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L +D G+GD + I++ TN LD LLRPG D I
Sbjct: 287 TLNQLLVEMD----GFGDRQGVILMAATNRPDVLDPALLRPGRFDRQI 330
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=AFG3 PE=1 SV=1
Length = 761
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 1 ATLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHM 49
ATL+++L +D D+ +++ TN LD L+RPG D HI +
Sbjct: 411 ATLNQLLVEMDGF--TTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQI 457
>sp|Q75JI3|NSF_DICDI Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1
Length = 738
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 22 IMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
++I TN K +D LLRPG ++VH+ +S
Sbjct: 372 LVIGMTNRKDMIDEALLRPGRLEVHVEIS 400
>sp|A9FDV9|FTSH2_SORC5 ATP-dependent zinc metalloprotease FtsH 2 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH2 PE=3 SV=1
Length = 607
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIV--KTNHKAKLDLTLLRPGHMDVHIHM 49
TL+++LT +D G+ M+V TN LD LLRPG D +H+
Sbjct: 278 TLNQLLTEMD----GFDAHTAMVVIGATNRAEILDPALLRPGRFDRRVHI 323
>sp|Q9P7Q4|SEC18_SCHPO Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec18 PE=1 SV=1
Length = 792
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 22 IMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
++I TN K +D LLRPG ++VH+ +S
Sbjct: 419 LVIGMTNRKDMIDEALLRPGRLEVHMEIS 447
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 22 IMIVKTNHKAKLDLTLLRPGHMDVHIHM 49
+++ TN ++D LLRPG +D HI++
Sbjct: 654 VIVAATNRPDEIDAALLRPGRLDRHIYV 681
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 23 MIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
MI+ TN LD LLRPG +D IH+
Sbjct: 275 MIMATNRPDTLDPALLRPGRLDRKIHID 302
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 23 MIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
MI+ TN LD LLRPG +D IH+
Sbjct: 275 MIMATNRPDTLDPALLRPGRLDRKIHID 302
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 23 MIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
MI+ TN LD LLRPG +D IH+
Sbjct: 275 MIMATNRPDTLDPALLRPGRLDRKIHID 302
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 23 MIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
MI+ TN LD LLRPG +D IH+
Sbjct: 275 MIMATNRPDTLDPALLRPGRLDRKIHID 302
>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2
Length = 1799
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 31 AKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHP 71
A+L+L + RPG + H +PCG +P + +Q + HP
Sbjct: 639 AELELMVQRPGPVSAH------SPCGHVLPKDDRIQGMLHP 673
>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1
Length = 1801
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 31 AKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHP 71
A+L+L + RPG + H +PCG +P + +Q + HP
Sbjct: 639 AELELVVQRPGPVSAH------SPCGHVLPRDDRIQGMLHP 673
>sp|B0K5A3|FTSH1_THEPX ATP-dependent zinc metalloprotease FtsH 1 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH1 PE=3 SV=1
Length = 611
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L +D + G I+I TN LD LLRPG D HI
Sbjct: 283 TLNQLLVEMDGFSVNEG--IIVIAATNRPDILDPALLRPGRFDRHI 326
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 2 TLSRMLTFIDRLWLGYG--DERIMIVKTNHKAKLDLTLLRPGHMDVHIHM 49
TL+++L +D G+ D+ +I TN K LD LLRPG D HI +
Sbjct: 302 TLTQLLAEMD----GFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKI 347
>sp|Q7UUZ7|FTSH1_RHOBA ATP-dependent zinc metalloprotease FtsH 1 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH1 PE=3 SV=1
Length = 672
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L +D G+G + I+I TN LD LLRPG D H+
Sbjct: 319 TLNQILGEMD----GFGGAQAVIVIAATNRPDVLDPALLRPGRFDRHV 362
>sp|A1AT11|FTSH_PELPD ATP-dependent zinc metalloprotease FtsH OS=Pelobacter propionicus
(strain DSM 2379) GN=ftsH PE=3 SV=1
Length = 623
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 2 TLSRMLTFIDRLWLGYG--DERIMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L+ +D G+ +E I++ TN LD LLRPG D H+
Sbjct: 296 TLNQLLSEMD----GFDQHEEVIVLAATNRPDVLDPALLRPGRFDRHV 339
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHIHM 49
TL+++LT +D G+G I++ TN LD LLR G D IH+
Sbjct: 319 TLNQLLTEMD----GFGSNSGVIILAATNRADILDKALLRAGRFDRQIHV 364
>sp|O80983|FTSH4_ARATH ATP-dependent zinc metalloprotease FTSH 4, mitochondrial
OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2
Length = 717
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL++ML +D G I++ TN LD L+RPG D HI
Sbjct: 346 TLNQMLVELDGFKQNEG--IIVVAATNFPESLDKALVRPGRFDRHI 389
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 2 TLSRMLTFIDRLWLGYGDER--IMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+ +L +D G+G I++ TN LD LLRPG D H+
Sbjct: 344 TLNALLVEMD----GFGSNSGVIVMAATNRPETLDPALLRPGRFDRHV 387
>sp|Q3JMH0|FTSH_BURP1 ATP-dependent zinc metalloprotease FtsH OS=Burkholderia
pseudomallei (strain 1710b) GN=ftsH PE=3 SV=2
Length = 666
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L +D G I++ TN LD LLRPG D HI
Sbjct: 292 TLNQLLVEMDGFQANSG--VILMAATNRPEILDPALLRPGRFDRHI 335
>sp|O19922|FTSH_CYACA ATP-dependent zinc metalloprotease FtsH OS=Cyanidium caldarium
GN=ftsH PE=3 SV=1
Length = 614
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 2 TLSRMLTFIDRLWLGY-GDERIMIVK-TNHKAKLDLTLLRPGHMDVHIHMS 50
TL+++LT +D G+ GD +++V TN LD LLRPG D I +S
Sbjct: 293 TLNQLLTEMD----GFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVS 339
>sp|Q83FV7|FTSH_TROWT ATP-dependent zinc metalloprotease FtsH OS=Tropheryma whipplei
(strain Twist) GN=ftsH PE=3 SV=1
Length = 666
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 22 IMIVKTNHKAKLDLTLLRPGHMDVHI 47
I+I TN LD LLRPG D H+
Sbjct: 302 ILIAATNRSDVLDSALLRPGRFDRHV 327
>sp|Q9M0Y8|NSF_ARATH Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2
Length = 742
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 22 IMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
++I TN K LD LLRPG ++V + +S
Sbjct: 365 LLIGMTNRKDLLDEALLRPGRLEVQVEIS 393
>sp|Q9TJ83|FTSH_CYAME ATP-dependent zinc metalloprotease FtsH OS=Cyanidioschyzon merolae
GN=ftsH PE=3 SV=1
Length = 603
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50
TL+++LT +D G I+I TN LD LLRPG D I +S
Sbjct: 276 TLNQLLTEMDGFEGNTG--VIVIAATNRVDVLDAALLRPGRFDRQIMVS 322
>sp|O32617|FTSH_HELFC ATP-dependent zinc metalloprotease FtsH OS=Helicobacter felis
(strain ATCC 49179 / NCTC 12436 / CS1) GN=ftsH PE=3 SV=1
Length = 638
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 2 TLSRMLTFIDRLWLGYGDER---IMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L +D G+G E I++ TN LD LLRPG D +
Sbjct: 299 TLNQLLAEMD----GFGSENAPVIVLAATNRPEILDPALLRPGRFDRQV 343
>sp|Q8LQJ9|FTSH4_ORYSJ ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH4 PE=3 SV=1
Length = 709
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L +D G I+I TN LD L+RPG D HI
Sbjct: 342 TLNQLLVELDGFKQNEG--IIVIAATNFPQSLDKALVRPGRFDRHI 385
>sp|Q8LQJ8|FTSH5_ORYSJ ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH5 PE=3 SV=1
Length = 715
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHI 47
TL+++L +D G I+I TN LD L+RPG D HI
Sbjct: 349 TLNQLLVELDGFKQNEG--IIVIAATNFPESLDKALVRPGRFDRHI 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,262,211
Number of Sequences: 539616
Number of extensions: 1091859
Number of successful extensions: 3766
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3734
Number of HSP's gapped (non-prelim): 60
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)