Query 038334
Match_columns 90
No_of_seqs 112 out of 1164
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 8.9E-36 1.9E-40 236.0 7.0 90 1-90 319-411 (457)
2 COG1222 RPT1 ATP-dependent 26S 99.9 5E-23 1.1E-27 160.9 7.5 83 2-86 274-359 (406)
3 KOG0730 AAA+-type ATPase [Post 99.8 2.2E-19 4.9E-24 147.8 6.4 74 3-78 555-631 (693)
4 KOG0734 AAA+-type ATPase conta 99.8 1.9E-19 4.1E-24 147.0 5.0 65 2-68 423-487 (752)
5 KOG0728 26S proteasome regulat 99.7 3.7E-18 8.1E-23 130.7 6.6 83 2-86 270-355 (404)
6 KOG0726 26S proteasome regulat 99.7 9.8E-19 2.1E-23 135.6 2.5 62 2-65 308-369 (440)
7 KOG0729 26S proteasome regulat 99.7 1.6E-18 3.5E-23 133.6 3.0 83 2-86 300-385 (435)
8 KOG0733 Nuclear AAA ATPase (VC 99.7 1.8E-17 4E-22 136.7 7.3 77 3-81 632-713 (802)
9 TIGR03689 pup_AAA proteasome A 99.7 4E-17 8.8E-22 131.8 5.9 63 3-67 318-380 (512)
10 KOG0731 AAA+-type ATPase conta 99.7 4.2E-17 9.2E-22 136.3 5.5 64 2-67 434-497 (774)
11 COG0465 HflB ATP-dependent Zn 99.7 9.3E-17 2E-21 131.6 6.9 78 2-81 272-352 (596)
12 KOG0727 26S proteasome regulat 99.7 8E-17 1.7E-21 123.5 5.6 59 3-63 279-337 (408)
13 KOG0652 26S proteasome regulat 99.7 1.3E-16 2.9E-21 122.7 6.6 79 2-82 294-375 (424)
14 KOG0736 Peroxisome assembly fa 99.6 1.1E-15 2.3E-20 128.4 7.5 78 3-81 794-876 (953)
15 PRK10733 hflB ATP-dependent me 99.6 1.8E-15 4E-20 124.2 6.3 65 2-68 274-338 (644)
16 TIGR01243 CDC48 AAA family ATP 99.6 3.7E-15 8.1E-20 123.2 7.3 63 3-67 575-637 (733)
17 TIGR01241 FtsH_fam ATP-depende 99.6 4.1E-15 8.9E-20 118.2 7.2 65 2-68 177-241 (495)
18 COG0464 SpoVK ATPases of the A 99.6 5.1E-15 1.1E-19 116.9 7.0 66 3-70 363-428 (494)
19 PTZ00454 26S protease regulato 99.6 8.4E-15 1.8E-19 115.0 6.9 62 3-66 269-330 (398)
20 CHL00206 ycf2 Ycf2; Provisiona 99.5 7.7E-15 1.7E-19 131.2 7.1 62 2-63 1753-1815(2281)
21 KOG0733 Nuclear AAA ATPase (VC 99.5 2.6E-14 5.6E-19 118.3 7.5 79 3-81 310-393 (802)
22 KOG0735 AAA+-type ATPase [Post 99.5 2.2E-14 4.7E-19 120.2 6.9 76 3-80 788-866 (952)
23 KOG0651 26S proteasome regulat 99.5 3.5E-15 7.6E-20 115.9 1.9 61 2-64 255-315 (388)
24 KOG0732 AAA+-type ATPase conta 99.5 4.7E-14 1E-18 121.1 7.3 78 3-82 391-468 (1080)
25 PLN00020 ribulose bisphosphate 99.5 9.8E-14 2.1E-18 109.6 8.0 76 4-82 242-327 (413)
26 PTZ00361 26 proteosome regulat 99.5 3.7E-14 8.1E-19 112.7 5.6 62 3-66 307-368 (438)
27 PRK03992 proteasome-activating 99.5 1.1E-13 2.4E-18 107.6 6.8 76 2-79 254-332 (389)
28 CHL00176 ftsH cell division pr 99.5 1E-13 2.2E-18 114.4 6.8 64 2-67 305-368 (638)
29 KOG0741 AAA+-type ATPase [Post 99.5 1.5E-14 3.3E-19 118.5 1.2 78 3-82 354-438 (744)
30 CHL00195 ycf46 Ycf46; Provisio 99.3 1.2E-12 2.5E-17 105.4 5.8 61 3-67 347-407 (489)
31 TIGR01242 26Sp45 26S proteasom 99.3 3E-12 6.5E-17 98.1 7.0 78 2-81 245-325 (364)
32 KOG0738 AAA+-type ATPase [Post 99.2 2.8E-11 6E-16 96.5 5.2 77 3-82 333-415 (491)
33 KOG0739 AAA+-type ATPase [Post 99.2 3E-11 6.5E-16 94.4 4.2 66 4-72 254-319 (439)
34 COG1223 Predicted ATPase (AAA+ 99.1 8.1E-11 1.8E-15 90.6 3.9 60 3-66 239-298 (368)
35 KOG0730 AAA+-type ATPase [Post 99.1 2.8E-10 6.1E-15 94.5 6.9 65 3-70 305-369 (693)
36 TIGR01243 CDC48 AAA family ATP 99.1 2.8E-10 6.1E-15 94.4 6.6 62 3-66 299-360 (733)
37 KOG0737 AAA+-type ATPase [Post 99.1 2E-10 4.2E-15 90.4 5.0 79 4-84 215-296 (386)
38 KOG0740 AAA+-type ATPase [Post 98.8 4.3E-09 9.3E-14 84.1 5.2 68 3-72 273-340 (428)
39 PF00004 AAA: ATPase family as 98.5 8.5E-08 1.8E-12 61.7 2.9 47 3-51 86-132 (132)
40 COG0464 SpoVK ATPases of the A 98.0 1.4E-05 3.1E-10 63.4 6.0 59 3-64 104-162 (494)
41 KOG0744 AAA+-type ATPase [Post 97.4 0.00012 2.6E-09 58.1 3.3 58 3-64 282-339 (423)
42 KOG0742 AAA+-type ATPase [Post 97.4 0.00013 2.9E-09 59.5 3.5 46 19-66 484-529 (630)
43 TIGR00763 lon ATP-dependent pr 97.2 0.00074 1.6E-08 57.1 5.4 43 20-65 463-505 (775)
44 TIGR02881 spore_V_K stage V sp 96.8 0.0044 9.6E-08 45.5 5.9 63 4-72 131-198 (261)
45 CHL00181 cbbX CbbX; Provisiona 96.6 0.0041 8.9E-08 47.0 4.7 59 4-68 149-212 (287)
46 TIGR02880 cbbX_cfxQ probable R 96.5 0.005 1.1E-07 46.3 4.7 59 4-68 148-211 (284)
47 PRK11034 clpA ATP-dependent Cl 96.3 0.0029 6.2E-08 53.9 2.5 43 19-64 314-361 (758)
48 TIGR00635 ruvB Holliday juncti 96.1 0.011 2.4E-07 43.7 4.8 46 20-67 129-174 (305)
49 PRK00080 ruvB Holliday junctio 96.0 0.012 2.5E-07 44.6 4.4 47 20-68 150-196 (328)
50 COG0714 MoxR-like ATPases [Gen 95.1 0.072 1.6E-06 40.4 6.0 46 19-66 153-204 (329)
51 TIGR02640 gas_vesic_GvpN gas v 95.1 0.036 7.8E-07 41.0 4.2 59 20-82 151-214 (262)
52 TIGR03345 VI_ClpV1 type VI sec 95.0 0.017 3.6E-07 49.8 2.4 42 19-63 315-361 (852)
53 TIGR02639 ClpA ATP-dependent C 94.9 0.016 3.4E-07 48.8 2.1 43 19-64 310-357 (731)
54 PRK06893 DNA replication initi 94.6 0.039 8.4E-07 40.0 3.2 59 6-66 113-175 (229)
55 PRK10787 DNA-binding ATP-depen 94.3 0.1 2.2E-06 44.8 5.5 44 19-66 464-507 (784)
56 PRK10865 protein disaggregatio 94.3 0.045 9.8E-07 47.1 3.5 44 19-65 306-354 (857)
57 TIGR02902 spore_lonB ATP-depen 94.0 0.1 2.2E-06 42.7 4.8 43 21-66 235-277 (531)
58 PRK07940 DNA polymerase III su 93.9 0.11 2.4E-06 41.2 4.7 56 4-66 135-190 (394)
59 TIGR00678 holB DNA polymerase 93.5 0.16 3.5E-06 35.1 4.5 56 4-67 114-169 (188)
60 TIGR00362 DnaA chromosomal rep 93.1 0.14 3E-06 39.9 4.0 68 5-76 220-292 (405)
61 PRK13407 bchI magnesium chelat 93.1 0.18 3.9E-06 39.2 4.6 46 19-66 170-217 (334)
62 PRK06964 DNA polymerase III su 93.1 0.19 4.1E-06 39.3 4.7 54 4-64 150-203 (342)
63 TIGR02397 dnaX_nterm DNA polym 92.9 0.18 3.9E-06 37.8 4.2 56 4-66 135-190 (355)
64 PF05673 DUF815: Protein of un 92.8 0.34 7.4E-06 36.7 5.6 63 4-66 125-208 (249)
65 TIGR02030 BchI-ChlI magnesium 92.7 0.18 3.9E-06 39.2 4.1 45 20-66 174-220 (337)
66 CHL00081 chlI Mg-protoporyphyr 92.3 0.25 5.5E-06 38.8 4.5 45 20-66 187-233 (350)
67 PRK00149 dnaA chromosomal repl 92.3 0.15 3.3E-06 40.4 3.3 59 5-67 232-295 (450)
68 TIGR03346 chaperone_ClpB ATP-d 92.3 0.14 2.9E-06 44.1 3.2 43 19-64 301-348 (852)
69 PHA02544 44 clamp loader, smal 92.2 0.24 5.2E-06 36.7 4.1 42 19-63 130-171 (316)
70 KOG0735 AAA+-type ATPase [Post 91.1 0.27 5.9E-06 42.8 3.8 64 4-67 525-588 (952)
71 PRK11034 clpA ATP-dependent Cl 89.7 0.73 1.6E-05 39.6 5.2 61 4-66 575-667 (758)
72 PRK12422 chromosomal replicati 89.1 0.56 1.2E-05 37.7 3.8 46 20-67 235-286 (445)
73 TIGR02928 orc1/cdc6 family rep 89.0 1.3 2.8E-05 33.4 5.6 46 19-66 164-213 (365)
74 KOG0736 Peroxisome assembly fa 88.8 0.65 1.4E-05 40.7 4.2 47 19-67 532-578 (953)
75 TIGR02031 BchD-ChlD magnesium 88.3 0.76 1.6E-05 38.2 4.2 44 20-65 127-174 (589)
76 PRK14962 DNA polymerase III su 88.1 1.4 3E-05 35.8 5.5 55 4-65 135-189 (472)
77 PRK14970 DNA polymerase III su 88.0 1.7 3.6E-05 33.2 5.7 54 4-64 126-179 (367)
78 cd00009 AAA The AAA+ (ATPases 87.1 1.1 2.3E-05 27.8 3.5 30 19-50 119-150 (151)
79 TIGR02903 spore_lon_C ATP-depe 86.7 1.2 2.7E-05 37.1 4.6 58 20-80 323-381 (615)
80 PRK14086 dnaA chromosomal repl 86.6 1 2.2E-05 38.1 4.1 71 5-80 398-474 (617)
81 PRK07471 DNA polymerase III su 86.1 3.1 6.8E-05 32.6 6.4 57 4-67 159-215 (365)
82 smart00350 MCM minichromosome 85.9 1.6 3.4E-05 35.5 4.7 44 20-65 343-400 (509)
83 PRK11331 5-methylcytosine-spec 85.0 1.3 2.9E-05 36.2 3.9 29 19-50 324-356 (459)
84 PRK06645 DNA polymerase III su 84.8 2.3 5E-05 34.9 5.3 56 4-66 146-201 (507)
85 PRK14956 DNA polymerase III su 84.6 2.3 5.1E-05 35.0 5.2 56 4-66 139-194 (484)
86 PRK14961 DNA polymerase III su 84.1 2.7 5.9E-05 32.5 5.2 54 5-65 138-191 (363)
87 PF07728 AAA_5: AAA domain (dy 84.0 0.57 1.2E-05 30.5 1.2 22 20-43 114-139 (139)
88 TIGR02639 ClpA ATP-dependent C 84.0 2.4 5.2E-05 35.9 5.1 45 20-66 594-663 (731)
89 PRK12323 DNA polymerase III su 83.8 1.3 2.9E-05 38.0 3.6 56 4-66 142-197 (700)
90 TIGR03420 DnaA_homol_Hda DnaA 83.8 1.3 2.9E-05 30.9 3.0 45 22-66 125-173 (226)
91 PRK09112 DNA polymerase III su 83.3 5.4 0.00012 31.1 6.6 54 4-64 159-212 (351)
92 PRK08727 hypothetical protein; 83.3 1.3 2.9E-05 32.1 3.0 42 22-65 128-175 (233)
93 PRK14088 dnaA chromosomal repl 83.1 1.3 2.8E-05 35.4 3.1 69 5-78 215-289 (440)
94 PRK05563 DNA polymerase III su 83.0 3.2 7E-05 34.3 5.4 55 4-65 137-191 (559)
95 PRK12402 replication factor C 82.9 4.7 0.0001 29.8 5.8 43 21-66 156-198 (337)
96 PRK05707 DNA polymerase III su 82.4 4.4 9.4E-05 31.3 5.7 54 4-64 124-177 (328)
97 PRK09087 hypothetical protein; 81.8 2.1 4.6E-05 31.1 3.6 58 6-68 106-169 (226)
98 PRK07003 DNA polymerase III su 81.8 4.1 8.8E-05 35.7 5.7 56 4-66 137-192 (830)
99 TIGR01650 PD_CobS cobaltochela 81.6 5.3 0.00012 31.3 5.9 44 20-65 178-233 (327)
100 PRK14959 DNA polymerase III su 80.8 3.2 7E-05 35.2 4.7 55 4-65 137-191 (624)
101 PRK08903 DnaA regulatory inact 80.0 3 6.6E-05 29.5 3.8 56 6-65 110-170 (227)
102 PRK14963 DNA polymerase III su 79.9 6.1 0.00013 32.4 5.9 55 4-65 134-188 (504)
103 COG2607 Predicted ATPase (AAA+ 79.1 8.4 0.00018 29.8 6.1 61 5-65 159-239 (287)
104 PRK05564 DNA polymerase III su 79.1 6.2 0.00013 29.6 5.4 55 4-65 111-165 (313)
105 PRK04195 replication factor C 79.0 5.6 0.00012 31.9 5.4 44 21-66 131-174 (482)
106 PRK00440 rfc replication facto 79.0 5.8 0.00012 29.0 5.1 44 20-66 132-175 (319)
107 smart00382 AAA ATPases associa 79.0 2.3 5E-05 25.8 2.6 33 19-52 115-147 (148)
108 PRK13531 regulatory ATPase Rav 77.6 4.4 9.5E-05 33.6 4.5 60 3-64 124-193 (498)
109 PRK00411 cdc6 cell division co 77.3 6.3 0.00014 30.0 5.1 45 20-66 173-221 (394)
110 PRK13342 recombination factor 76.2 5.7 0.00012 31.2 4.6 44 20-66 120-165 (413)
111 CHL00095 clpC Clp protease ATP 75.8 2.2 4.7E-05 36.7 2.3 41 19-62 306-351 (821)
112 PRK08691 DNA polymerase III su 75.7 4.5 9.8E-05 34.9 4.2 56 4-66 137-192 (709)
113 PRK07133 DNA polymerase III su 75.5 7 0.00015 33.7 5.3 54 4-64 136-189 (725)
114 PRK14953 DNA polymerase III su 74.6 6.6 0.00014 32.0 4.8 55 4-65 137-191 (486)
115 PRK08084 DNA replication initi 74.4 3.4 7.3E-05 30.0 2.8 41 21-63 133-178 (235)
116 PRK06305 DNA polymerase III su 73.5 9 0.0002 30.8 5.2 53 5-64 140-192 (451)
117 PRK10865 protein disaggregatio 72.9 4.3 9.3E-05 35.3 3.4 45 20-66 711-780 (857)
118 TIGR03346 chaperone_ClpB ATP-d 71.5 4.9 0.00011 34.7 3.5 46 19-66 707-777 (852)
119 PRK07764 DNA polymerase III su 70.4 11 0.00024 32.9 5.3 55 4-65 138-192 (824)
120 KOG2004 Mitochondrial ATP-depe 70.1 6 0.00013 34.8 3.7 43 20-65 554-596 (906)
121 PRK07994 DNA polymerase III su 69.5 14 0.0003 31.5 5.7 55 4-65 137-191 (647)
122 PRK05896 DNA polymerase III su 69.4 8.5 0.00018 32.6 4.4 54 5-65 138-191 (605)
123 TIGR02442 Cob-chelat-sub cobal 69.3 10 0.00022 31.7 4.8 44 20-65 169-214 (633)
124 PLN03025 replication factor C 68.2 9 0.0002 28.9 4.0 44 19-65 128-171 (319)
125 PRK14965 DNA polymerase III su 67.9 9.1 0.0002 31.8 4.2 55 4-65 137-191 (576)
126 PRK14952 DNA polymerase III su 67.0 13 0.00028 31.2 4.9 56 4-66 136-191 (584)
127 PRK06647 DNA polymerase III su 66.9 13 0.00027 31.0 4.9 55 4-65 137-191 (563)
128 PRK05642 DNA replication initi 66.7 9.8 0.00021 27.6 3.8 54 6-63 119-177 (234)
129 PRK06620 hypothetical protein; 66.3 9 0.0002 27.6 3.5 45 19-66 113-161 (214)
130 PRK14948 DNA polymerase III su 66.3 15 0.00032 31.0 5.2 53 4-63 139-191 (620)
131 PRK14969 DNA polymerase III su 65.7 10 0.00022 31.2 4.1 55 4-65 137-191 (527)
132 PRK06090 DNA polymerase III su 65.7 15 0.00033 28.4 4.9 53 4-63 126-178 (319)
133 PRK14951 DNA polymerase III su 64.5 17 0.00037 30.7 5.3 45 19-66 153-197 (618)
134 PF05496 RuvB_N: Holliday junc 63.9 16 0.00034 27.5 4.5 45 21-67 150-194 (233)
135 PTZ00112 origin recognition co 63.9 17 0.00038 32.9 5.3 46 19-66 901-950 (1164)
136 cd07202 cPLA2_Grp-IVC Group IV 63.1 4.6 0.0001 32.9 1.6 32 35-66 298-332 (430)
137 PRK14949 DNA polymerase III su 62.1 22 0.00047 31.9 5.6 56 4-66 137-192 (944)
138 PRK08058 DNA polymerase III su 61.9 17 0.00036 27.8 4.4 52 5-63 129-180 (329)
139 PRK14964 DNA polymerase III su 61.8 14 0.00031 30.3 4.2 56 4-66 134-189 (491)
140 COG0466 Lon ATP-dependent Lon 60.3 13 0.00028 32.5 3.8 43 20-65 466-508 (782)
141 PRK09111 DNA polymerase III su 58.4 25 0.00053 29.6 5.1 45 19-66 161-205 (598)
142 PRK14960 DNA polymerase III su 58.1 19 0.00041 31.2 4.4 56 4-66 136-191 (702)
143 cd07201 cPLA2_Grp-IVB-IVD-IVE- 57.6 5 0.00011 33.6 1.0 33 35-67 387-422 (541)
144 PRK07993 DNA polymerase III su 57.0 25 0.00055 27.1 4.7 56 4-66 126-181 (334)
145 cd01080 NAD_bind_m-THF_DH_Cycl 56.5 24 0.00052 24.7 4.2 45 21-67 89-147 (168)
146 PRK08769 DNA polymerase III su 56.3 24 0.00053 27.3 4.5 53 4-63 131-183 (319)
147 PF00308 Bac_DnaA: Bacterial d 56.2 9.7 0.00021 27.4 2.2 74 5-82 118-196 (219)
148 PRK14950 DNA polymerase III su 56.1 28 0.00061 28.8 5.1 55 4-65 138-192 (585)
149 PHA02244 ATPase-like protein 55.6 16 0.00035 29.4 3.5 33 19-54 220-263 (383)
150 PRK06871 DNA polymerase III su 54.5 30 0.00066 26.8 4.8 53 4-63 125-177 (325)
151 PRK08451 DNA polymerase III su 53.4 37 0.0008 28.3 5.3 56 4-66 135-190 (535)
152 PRK14087 dnaA chromosomal repl 51.9 17 0.00036 29.3 3.1 58 5-67 227-290 (450)
153 PRK09862 putative ATP-dependen 50.7 16 0.00036 30.1 2.9 35 19-55 336-391 (506)
154 PRK14958 DNA polymerase III su 49.6 30 0.00065 28.4 4.2 55 4-65 137-191 (509)
155 PRK13406 bchD magnesium chelat 48.4 26 0.00055 29.4 3.7 52 3-56 110-173 (584)
156 PLN03210 Resistant to P. syrin 48.3 39 0.00084 30.2 5.0 44 19-67 323-366 (1153)
157 cd05212 NAD_bind_m-THF_DH_Cycl 47.5 14 0.0003 25.3 1.7 24 20-43 72-95 (140)
158 PRK14957 DNA polymerase III su 47.3 49 0.0011 27.6 5.2 54 4-64 137-190 (546)
159 PRK14184 bifunctional 5,10-met 46.4 21 0.00046 27.4 2.8 30 20-49 205-236 (286)
160 smart00763 AAA_PrkA PrkA AAA d 46.1 10 0.00022 30.2 1.0 43 21-66 278-328 (361)
161 PRK07399 DNA polymerase III su 45.8 70 0.0015 24.5 5.5 53 5-65 143-195 (314)
162 PRK14176 bifunctional 5,10-met 45.8 22 0.00048 27.4 2.8 47 20-66 208-262 (287)
163 PRK14177 bifunctional 5,10-met 45.5 20 0.00043 27.6 2.5 46 20-65 203-253 (284)
164 PRK14955 DNA polymerase III su 44.9 29 0.00063 27.1 3.4 44 19-65 156-199 (397)
165 TIGR03345 VI_ClpV1 type VI sec 44.9 29 0.00062 30.4 3.6 31 33-66 751-781 (852)
166 PRK14175 bifunctional 5,10-met 44.1 24 0.00051 27.1 2.7 31 20-52 202-232 (286)
167 PRK14759 potassium-transportin 43.9 7.8 0.00017 20.3 0.0 8 36-43 22-29 (29)
168 PRK05342 clpX ATP-dependent pr 43.8 28 0.0006 27.9 3.2 23 41-63 301-323 (412)
169 PRK08699 DNA polymerase III su 43.2 31 0.00068 26.5 3.3 51 5-62 132-182 (325)
170 PRK13341 recombination factor 42.7 44 0.00096 28.8 4.4 44 20-66 137-182 (725)
171 PRK14178 bifunctional 5,10-met 42.6 27 0.00059 26.8 2.8 47 20-66 196-250 (279)
172 PRK14179 bifunctional 5,10-met 41.8 26 0.00056 26.9 2.6 30 20-49 202-233 (284)
173 PRK14971 DNA polymerase III su 41.4 78 0.0017 26.7 5.6 53 5-64 140-192 (614)
174 PRK10792 bifunctional 5,10-met 41.4 30 0.00065 26.6 2.9 47 20-66 203-258 (285)
175 CHL00095 clpC Clp protease ATP 41.4 41 0.00089 29.0 4.0 26 41-66 708-733 (821)
176 TIGR00382 clpX endopeptidase C 40.2 31 0.00066 27.8 2.9 28 34-63 302-329 (413)
177 COG2812 DnaX DNA polymerase II 39.7 81 0.0017 26.3 5.3 46 19-68 148-194 (515)
178 PF12362 DUF3646: DNA polymera 38.4 54 0.0012 21.9 3.5 21 68-88 96-116 (117)
179 PF03843 Slp: Outer membrane l 38.3 31 0.00066 24.2 2.4 22 19-43 75-96 (160)
180 PRK04132 replication factor C 37.9 74 0.0016 28.2 5.0 43 19-64 659-701 (846)
181 PRK14954 DNA polymerase III su 37.4 83 0.0018 26.7 5.1 44 19-65 156-199 (620)
182 PRK14180 bifunctional 5,10-met 37.0 35 0.00075 26.2 2.6 30 19-48 201-232 (282)
183 PRK07132 DNA polymerase III su 36.8 78 0.0017 24.2 4.6 52 5-63 109-160 (299)
184 PRK14172 bifunctional 5,10-met 36.7 33 0.00071 26.3 2.4 24 20-43 202-225 (278)
185 PF03397 Rhabdo_matrix: Rhabdo 34.9 32 0.00069 24.6 2.0 39 38-83 33-71 (168)
186 COG1029 FwdB Formylmethanofura 33.5 86 0.0019 25.6 4.4 61 20-80 142-213 (429)
187 PRK14174 bifunctional 5,10-met 33.4 42 0.0009 25.9 2.6 30 20-49 207-238 (295)
188 PF09604 Potass_KdpF: F subuni 33.0 15 0.00032 18.5 0.0 8 36-43 18-25 (25)
189 PRK14168 bifunctional 5,10-met 32.7 40 0.00087 26.1 2.4 24 20-43 209-232 (297)
190 KOG1918 3-methyladenine DNA gl 31.3 2.2E+02 0.0047 21.8 6.0 62 4-83 164-225 (254)
191 PRK07276 DNA polymerase III su 31.2 1.2E+02 0.0026 23.2 4.8 51 4-62 122-172 (290)
192 COG4737 Uncharacterized protei 29.9 38 0.00082 23.2 1.6 38 47-88 82-119 (123)
193 PRK14190 bifunctional 5,10-met 29.6 37 0.0008 26.1 1.7 24 20-43 202-225 (284)
194 COG1239 ChlI Mg-chelatase subu 29.3 98 0.0021 25.3 4.2 51 11-63 178-230 (423)
195 COG1485 Predicted ATPase [Gene 29.3 34 0.00074 27.5 1.5 25 19-43 160-185 (367)
196 PRK14191 bifunctional 5,10-met 29.2 39 0.00084 26.0 1.8 28 20-47 201-230 (285)
197 PF14289 DUF4369: Domain of un 28.7 53 0.0012 19.9 2.1 35 20-54 27-61 (106)
198 TIGR00764 lon_rel lon-related 27.6 51 0.0011 27.7 2.4 29 20-50 268-301 (608)
199 COG5245 DYN1 Dynein, heavy cha 27.3 85 0.0018 31.0 3.8 55 20-82 1611-1674(3164)
200 PRK06581 DNA polymerase III su 27.0 1.8E+02 0.0039 22.4 5.0 55 5-66 108-162 (263)
201 PRK14170 bifunctional 5,10-met 26.7 63 0.0014 24.9 2.6 23 20-42 201-223 (284)
202 KOG2383 Predicted ATPase [Gene 26.2 33 0.00072 28.3 1.0 20 19-38 223-243 (467)
203 PF00493 MCM: MCM2/3/5 family 26.1 97 0.0021 23.7 3.5 44 21-66 165-222 (331)
204 PRK14700 recombination factor 25.4 1.3E+02 0.0028 23.5 4.0 45 19-66 7-53 (300)
205 PRK14183 bifunctional 5,10-met 24.4 53 0.0011 25.3 1.8 24 20-43 201-224 (281)
206 PRK14189 bifunctional 5,10-met 24.3 52 0.0011 25.3 1.7 29 20-50 202-230 (285)
207 PRK14166 bifunctional 5,10-met 24.1 52 0.0011 25.3 1.7 24 20-43 201-224 (282)
208 PF12846 AAA_10: AAA-like doma 24.0 49 0.0011 23.4 1.4 47 18-68 251-302 (304)
209 cd07985 LPLAT_GPAT Lysophospho 24.0 33 0.00072 25.8 0.6 16 23-38 24-39 (235)
210 PF14875 PIP49_N: N-term cyste 23.6 2E+02 0.0044 20.2 4.5 21 46-66 120-140 (158)
211 PF01637 Arch_ATPase: Archaeal 23.5 88 0.0019 21.1 2.6 60 4-66 142-205 (234)
212 PF13177 DNA_pol3_delta2: DNA 23.3 57 0.0012 22.2 1.6 31 4-38 120-150 (162)
213 PRK14171 bifunctional 5,10-met 22.7 57 0.0012 25.1 1.7 23 20-42 203-225 (288)
214 PRK08485 DNA polymerase III su 22.5 2.9E+02 0.0064 20.4 5.3 56 4-63 72-137 (206)
215 PF00931 NB-ARC: NB-ARC domain 22.2 2.2E+02 0.0048 20.2 4.6 45 20-68 129-173 (287)
216 PRK14169 bifunctional 5,10-met 22.0 61 0.0013 24.9 1.7 23 20-42 200-222 (282)
217 PRK14192 bifunctional 5,10-met 21.9 64 0.0014 24.5 1.8 29 20-48 203-233 (283)
218 PF01037 AsnC_trans_reg: AsnC 21.6 86 0.0019 17.7 2.0 26 40-65 32-57 (74)
219 PLN00106 malate dehydrogenase 21.4 1.1E+02 0.0024 23.7 3.0 50 19-68 127-182 (323)
220 PRK14167 bifunctional 5,10-met 21.3 64 0.0014 25.0 1.7 24 20-43 205-228 (297)
221 PRK14185 bifunctional 5,10-met 21.3 64 0.0014 24.9 1.7 24 20-43 205-228 (293)
222 PF10443 RNA12: RNA12 protein; 21.1 2.2E+02 0.0047 23.4 4.7 46 21-68 185-232 (431)
223 KOG2680 DNA helicase TIP49, TB 20.8 1.6E+02 0.0034 24.0 3.8 29 47-75 353-381 (454)
224 PF05729 NACHT: NACHT domain 20.8 2.3E+02 0.0051 17.9 4.8 23 45-67 143-165 (166)
225 PRK14193 bifunctional 5,10-met 20.6 69 0.0015 24.6 1.7 29 20-50 204-232 (284)
226 COG0621 MiaB 2-methylthioadeni 20.3 75 0.0016 25.9 2.0 80 2-85 213-298 (437)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-36 Score=236.05 Aligned_cols=90 Identities=59% Similarity=0.904 Sum_probs=87.4
Q ss_pred CcHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCC-CccHHHHHHH
Q 038334 1 ATLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIE-HPLFSKIEML 79 (90)
Q Consensus 1 ~tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~-~~l~~~i~~l 79 (90)
||+|+|||++||+||+||++|||||||||+|+|||||+||||+|+||||++|++++++.|+++||+.++ |++|++|+++
T Consensus 319 VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l 398 (457)
T KOG0743|consen 319 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERL 398 (457)
T ss_pred eehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999975 9999999999
Q ss_pred hhccccc--cccC
Q 038334 80 LELKKVI--QVAE 90 (90)
Q Consensus 80 l~~~~~t--~v~E 90 (90)
+..+++| ||+|
T Consensus 399 ~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 399 IEETEVTPAQVAE 411 (457)
T ss_pred hhcCccCHHHHHH
Confidence 9999998 8876
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5e-23 Score=160.93 Aligned_cols=83 Identities=22% Similarity=0.173 Sum_probs=73.8
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC---CCCCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ---IIEHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~---~~~~~l~~~i~~ 78 (90)
|+-+|||+|||+.+. +++-|||||||++.||||||||||||++|+|++||.++++.+++-|.+ ..+...|+.+..
T Consensus 274 TmleLL~qlDGFD~~--~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~ 351 (406)
T COG1222 274 TMLELLNQLDGFDPR--GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR 351 (406)
T ss_pred HHHHHHHhccCCCCC--CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence 678999999999998 899999999999999999999999999999999999999999988854 456678888888
Q ss_pred Hhhccccc
Q 038334 79 LLELKKVI 86 (90)
Q Consensus 79 ll~~~~~t 86 (90)
+.++..-+
T Consensus 352 ~~~g~sGA 359 (406)
T COG1222 352 LTEGFSGA 359 (406)
T ss_pred hcCCCchH
Confidence 77665433
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.2e-19 Score=147.79 Aligned_cols=74 Identities=24% Similarity=0.213 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC---CCCccHHHHHH
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI---IEHPLFSKIEM 78 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~---~~~~l~~~i~~ 78 (90)
+++||++|||+... .+++||+|||||+.|||||+||||||+.|||++||.+++.++++.++.. .+...+.++.+
T Consensus 555 lsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 555 LSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred HHHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 78999999999887 7899999999999999999999999999999999999999999998753 23334455544
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.9e-19 Score=146.97 Aligned_cols=65 Identities=31% Similarity=0.369 Sum_probs=62.4
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
|+++||.+|||+..+ +|+|||+|||+||.||+||+||||||++|.|+.||..+|.+|+..|+.-.
T Consensus 423 TlNQLLvEmDGF~qN--eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 423 TLNQLLVEMDGFKQN--EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred HHHHHHHHhcCcCcC--CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 789999999999999 88999999999999999999999999999999999999999999998743
No 5
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-18 Score=130.67 Aligned_cols=83 Identities=20% Similarity=0.125 Sum_probs=70.4
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC---CCCCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ---IIEHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~---~~~~~l~~~i~~ 78 (90)
|+-+|||++||+.+. .++-|||+||+++.|||||+||||+|++|+|+.|+.+++.++++-|.. ...-..+.+|++
T Consensus 270 tmlellnqldgfeat--knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiae 347 (404)
T KOG0728|consen 270 TMLELLNQLDGFEAT--KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 347 (404)
T ss_pred HHHHHHHhccccccc--cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHH
Confidence 577999999999998 889999999999999999999999999999999999999999987643 223355777777
Q ss_pred Hhhccccc
Q 038334 79 LLELKKVI 86 (90)
Q Consensus 79 ll~~~~~t 86 (90)
-+..+.-+
T Consensus 348 km~gasga 355 (404)
T KOG0728|consen 348 KMPGASGA 355 (404)
T ss_pred hCCCCccc
Confidence 77665443
No 6
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.8e-19 Score=135.64 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=58.0
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
|+-+|||++||+.++ ..+-||||||+++.|||||+||||+|++|+|++||..+.+.+|.-|-
T Consensus 308 tmLELLNQldGFdsr--gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHT 369 (440)
T KOG0726|consen 308 TMLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHT 369 (440)
T ss_pred HHHHHHHhccCcccc--CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEee
Confidence 567999999999998 78999999999999999999999999999999999999999986654
No 7
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.6e-18 Score=133.57 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=73.1
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc---CCCCCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL---QIIEHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l---~~~~~~l~~~i~~ 78 (90)
|+-+|+|++||+..+ .++.|+|+||+|+.|||||+||||+|++++|++||.+++..+++-|- +++....|+-+.+
T Consensus 300 tmleli~qldgfdpr--gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellar 377 (435)
T KOG0729|consen 300 TMLELINQLDGFDPR--GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLAR 377 (435)
T ss_pred HHHHHHHhccCCCCC--CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHh
Confidence 577899999999998 78999999999999999999999999999999999999999987764 4455677999999
Q ss_pred Hhhccccc
Q 038334 79 LLELKKVI 86 (90)
Q Consensus 79 ll~~~~~t 86 (90)
|+++..-+
T Consensus 378 lcpnstga 385 (435)
T KOG0729|consen 378 LCPNSTGA 385 (435)
T ss_pred hCCCCcch
Confidence 98876544
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-17 Score=136.69 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC-----CCCccHHHHH
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI-----IEHPLFSKIE 77 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~-----~~~~l~~~i~ 77 (90)
+++||++|||+..+ .|++||+||||||.||||+|||||||...+|++|+.+.+..|++.+... .+...+++|.
T Consensus 632 vNqLLtElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 632 VNQLLTELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIA 709 (802)
T ss_pred HHHHHHHhcccccc--cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence 68999999999888 7899999999999999999999999999999999999999999888763 3345577776
Q ss_pred HHhh
Q 038334 78 MLLE 81 (90)
Q Consensus 78 ~ll~ 81 (90)
+...
T Consensus 710 ~~~~ 713 (802)
T KOG0733|consen 710 RNTK 713 (802)
T ss_pred hccc
Confidence 6443
No 9
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.68 E-value=4e-17 Score=131.79 Aligned_cols=63 Identities=27% Similarity=0.343 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+++||++|||+.+. ++++||+|||+++.||||++||||||++|+|++|+.+++++|+++|+..
T Consensus 318 l~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 318 VPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 57999999999887 6899999999999999999999999999999999999999999999874
No 10
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.2e-17 Score=136.32 Aligned_cols=64 Identities=28% Similarity=0.323 Sum_probs=61.6
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
|+++||.+|||+.+. .++|++++||+++.|||||+||||||++|+++.|+...+++|++.|++.
T Consensus 434 tlnQll~emDgf~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~ 497 (774)
T KOG0731|consen 434 TLNQLLVEMDGFETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK 497 (774)
T ss_pred HHHHHHHHhcCCcCC--CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc
Confidence 799999999999988 7899999999999999999999999999999999999999999999874
No 11
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.3e-17 Score=131.57 Aligned_cols=78 Identities=27% Similarity=0.218 Sum_probs=67.1
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC---CCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII---EHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~ 78 (90)
|+++||.+|||+.++ ++++++++|||||-+||||+||||||++|.++.||...++++++-|..-. +...+..+++
T Consensus 272 TLNQlLvEmDGF~~~--~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr 349 (596)
T COG0465 272 TLNQLLVEMDGFGGN--EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIAR 349 (596)
T ss_pred HHHHHHhhhccCCCC--CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhh
Confidence 789999999999988 88999999999999999999999999999999999999999999776543 3344555555
Q ss_pred Hhh
Q 038334 79 LLE 81 (90)
Q Consensus 79 ll~ 81 (90)
..+
T Consensus 350 ~tp 352 (596)
T COG0465 350 GTP 352 (596)
T ss_pred hCC
Confidence 443
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8e-17 Score=123.51 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
+-+|||+|||+... .++.|||+||+.+.|||||+||||+|++|+|++||.-+.+-+|..
T Consensus 279 l~ellnqmdgfdq~--~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~t 337 (408)
T KOG0727|consen 279 LIELLNQMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 337 (408)
T ss_pred HHHHHHhccCcCcc--cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHh
Confidence 45899999999998 889999999999999999999999999999999999987766644
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-16 Score=122.74 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=69.7
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc---CCCCCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL---QIIEHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l---~~~~~~l~~~i~~ 78 (90)
|+-+|||++||+.+. +.+.||++|||.+.|||||+|.||+|++|+|+.|..++++.+++-|. .+++...|+++.+
T Consensus 294 TMLELLNQLDGFss~--~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 294 TMLELLNQLDGFSSD--DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred HHHHHHHhhcCCCCc--cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 577999999999998 88999999999999999999999999999999999999999997764 4556677888877
Q ss_pred Hhhc
Q 038334 79 LLEL 82 (90)
Q Consensus 79 ll~~ 82 (90)
-.+.
T Consensus 372 sTdd 375 (424)
T KOG0652|consen 372 STDD 375 (424)
T ss_pred cccc
Confidence 5544
No 14
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.1e-15 Score=128.38 Aligned_cols=78 Identities=22% Similarity=0.217 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHH-H----HHHHHhhcCCCCCccHHHHH
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCG-F----RMPASNYLQIIEHPLFSKIE 77 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~-~----~~l~~~~l~~~~~~l~~~i~ 77 (90)
+|+||.+|||+..+....++||+||||||.|||||+||||||+.+|+|.++-.+ . +++-++ |..++...+.+|+
T Consensus 794 VSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk-FkLdedVdL~eiA 872 (953)
T KOG0736|consen 794 VSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK-FKLDEDVDLVEIA 872 (953)
T ss_pred HHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH-ccCCCCcCHHHHH
Confidence 689999999998543478999999999999999999999999999999887655 2 333333 4666666677766
Q ss_pred HHhh
Q 038334 78 MLLE 81 (90)
Q Consensus 78 ~ll~ 81 (90)
..+.
T Consensus 873 k~cp 876 (953)
T KOG0736|consen 873 KKCP 876 (953)
T ss_pred hhCC
Confidence 6553
No 15
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.59 E-value=1.8e-15 Score=124.20 Aligned_cols=65 Identities=28% Similarity=0.319 Sum_probs=60.7
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
++++||++|||+.+. +++++|+|||+|+.||||++||||||++|+|++|+.++++++++.|+...
T Consensus 274 ~ln~lL~~mdg~~~~--~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 274 TLNQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred HHHHHHHhhhcccCC--CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 478899999999887 78999999999999999999999999999999999999999999998743
No 16
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.58 E-value=3.7e-15 Score=123.20 Aligned_cols=63 Identities=24% Similarity=0.204 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+++||++|||+... .+++||+|||+|+.||||++||||||++|++++|+.++++++++.|...
T Consensus 575 ~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~ 637 (733)
T TIGR01243 575 VNQLLTEMDGIQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS 637 (733)
T ss_pred HHHHHHHhhcccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC
Confidence 57899999999877 7899999999999999999999999999999999999999999988663
No 17
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.58 E-value=4.1e-15 Score=118.20 Aligned_cols=65 Identities=26% Similarity=0.256 Sum_probs=60.1
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
++++||++|||+.+. ++++||+|||+|+.||||++||||||++|+++.|+.++++++++.|+...
T Consensus 177 ~~~~lL~~~d~~~~~--~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~ 241 (495)
T TIGR01241 177 TLNQLLVEMDGFGTN--TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK 241 (495)
T ss_pred HHHHHHhhhccccCC--CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC
Confidence 467899999999877 67999999999999999999999999999999999999999999998753
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.1e-15 Score=116.95 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEH 70 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~ 70 (90)
++++|.+|||+... .+++||+|||+|+.||||++||||||.+|+|+.||.+++..+++.|+....+
T Consensus 363 ~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~ 428 (494)
T COG0464 363 VGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP 428 (494)
T ss_pred HHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC
Confidence 57899999999888 7899999999999999999999999999999999999999999999984333
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.55 E-value=8.4e-15 Score=114.96 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.++|+.|||+... .+++||+|||+|+.||||++||||||++|+|++|+.++++.+++.|+.
T Consensus 269 l~~LL~~ld~~~~~--~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 269 LLELLNQMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred HHHHHHHhhccCCC--CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 67899999999887 689999999999999999999999999999999999999999998865
No 20
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.55 E-value=7.7e-15 Score=131.24 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=54.6
Q ss_pred cHHHHHHHhcCCCC-CCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 2 TLSRMLTFIDRLWL-GYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 2 tls~lL~~lDG~~~-~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
|+++||+.|||... ....+++||+|||+|+.|||||+||||||++|+|+.|+..++++++..
T Consensus 1753 tL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~I 1815 (2281)
T CHL00206 1753 SLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFT 1815 (2281)
T ss_pred hHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHH
Confidence 68899999999853 123679999999999999999999999999999999999998887764
No 21
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.6e-14 Score=118.27 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCCC--CCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC---CCCCccHHHHH
Q 038334 3 LSRMLTFIDRLWLG--YGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ---IIEHPLFSKIE 77 (90)
Q Consensus 3 ls~lL~~lDG~~~~--~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~---~~~~~l~~~i~ 77 (90)
+++||+.|||+... .|++|+||+||||||.|||||.|+||||+.|.++.|+..+|..|++.... .+..-.|++|+
T Consensus 310 VaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA 389 (802)
T KOG0733|consen 310 VAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLA 389 (802)
T ss_pred HHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHH
Confidence 58999999999653 35789999999999999999999999999999999999999999977543 33344466666
Q ss_pred HHhh
Q 038334 78 MLLE 81 (90)
Q Consensus 78 ~ll~ 81 (90)
.+..
T Consensus 390 ~lTP 393 (802)
T KOG0733|consen 390 KLTP 393 (802)
T ss_pred hcCC
Confidence 5543
No 22
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.2e-14 Score=120.18 Aligned_cols=76 Identities=16% Similarity=0.050 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC---CCCCccHHHHHHH
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ---IIEHPLFSKIEML 79 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~---~~~~~l~~~i~~l 79 (90)
+++||++|||+..- +|++|+++|.|||.||||||||||+|+.++-+.|+...|-++++.... ..+..+++.++..
T Consensus 788 VNQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~ 865 (952)
T KOG0735|consen 788 VNQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQK 865 (952)
T ss_pred HHHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhh
Confidence 57999999999998 899999999999999999999999999999999999999888866433 2344555555544
Q ss_pred h
Q 038334 80 L 80 (90)
Q Consensus 80 l 80 (90)
-
T Consensus 866 T 866 (952)
T KOG0735|consen 866 T 866 (952)
T ss_pred c
Confidence 3
No 23
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.5e-15 Score=115.91 Aligned_cols=61 Identities=25% Similarity=0.217 Sum_probs=56.6
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
||-+|||+|||+... ..+-+|||||+|+.||||||||||+|++++.+.|..+++..+.+-|
T Consensus 255 TLMeLlnqmdgfd~l--~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 255 TLMELLNQMDGFDTL--HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred HHHHHHHhhccchhc--ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeec
Confidence 678999999999998 7899999999999999999999999999999999999988877654
No 24
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.7e-14 Score=121.13 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHHHhhc
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEMLLEL 82 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ll~~ 82 (90)
+|+||..|||+.++ ..++||+|||||+.+||||.||||||+.++|++|+.++++.++..+-....++.-......+..
T Consensus 391 vSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~ 468 (1080)
T KOG0732|consen 391 VSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAE 468 (1080)
T ss_pred HHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHH
Confidence 57899999999998 7899999999999999999999999999999999999999999888777667665555444433
No 25
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.49 E-value=9.8e-14 Score=109.65 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=59.3
Q ss_pred HHHHHHhcCC--------C--CCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCccH
Q 038334 4 SRMLTFIDRL--------W--LGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPLF 73 (90)
Q Consensus 4 s~lL~~lDG~--------~--~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 73 (90)
++||+.|||+ | .....+++||+|||+|+.|||||+||||||+.+ ..|+.+++..|++.++... ....
T Consensus 242 ~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~-~l~~ 318 (413)
T PLN00020 242 GTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD-GVSR 318 (413)
T ss_pred HHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC-CCCH
Confidence 6889998864 3 112256899999999999999999999999976 4899999999999988753 3334
Q ss_pred HHHHHHhhc
Q 038334 74 SKIEMLLEL 82 (90)
Q Consensus 74 ~~i~~ll~~ 82 (90)
.++..+.+.
T Consensus 319 ~dv~~Lv~~ 327 (413)
T PLN00020 319 EDVVKLVDT 327 (413)
T ss_pred HHHHHHHHc
Confidence 556655544
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.49 E-value=3.7e-14 Score=112.74 Aligned_cols=62 Identities=23% Similarity=0.227 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.++|+++||+... .++.||+|||+++.||||++||||||++|+|+.|+.+++.++++.|++
T Consensus 307 ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 307 MLELLNQLDGFDSR--GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred HHHHHHHHhhhccc--CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 56899999999876 679999999999999999999999999999999999999999998875
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.46 E-value=1.1e-13 Score=107.63 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=63.3
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC---CCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII---EHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~ 78 (90)
++.++|+++||+... .+++||+|||+++.||||++||||||++|+|+.|+.+++.++++.|+... ....+..+..
T Consensus 254 ~l~~lL~~ld~~~~~--~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~ 331 (389)
T PRK03992 254 TLMQLLAEMDGFDPR--GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAE 331 (389)
T ss_pred HHHHHHHhccccCCC--CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHH
Confidence 366789999998776 67999999999999999999999999999999999999999999987632 2233555444
Q ss_pred H
Q 038334 79 L 79 (90)
Q Consensus 79 l 79 (90)
.
T Consensus 332 ~ 332 (389)
T PRK03992 332 L 332 (389)
T ss_pred H
Confidence 3
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=99.46 E-value=1e-13 Score=114.36 Aligned_cols=64 Identities=31% Similarity=0.283 Sum_probs=59.9
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
++++||+.|||+... .+++||+|||+++.||||++||||||++|+++.|+.++|..+++.|+..
T Consensus 305 ~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 305 TLNQLLTEMDGFKGN--KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred HHHHHHhhhccccCC--CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 467899999999877 7899999999999999999999999999999999999999999999875
No 29
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.5e-14 Score=118.46 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC-------CCCCccHHH
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ-------IIEHPLFSK 75 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~-------~~~~~l~~~ 75 (90)
+++||+.|||+.+- ++++||+.|||+|.||.||||||||.+++++++||+++|-++++-|-. .+.....++
T Consensus 354 VNQLLsKmDGVeqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~e 431 (744)
T KOG0741|consen 354 VNQLLSKMDGVEQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKE 431 (744)
T ss_pred HHHHHHhcccHHhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHH
Confidence 57999999999998 899999999999999999999999999999999999999888765432 234456777
Q ss_pred HHHHhhc
Q 038334 76 IEMLLEL 82 (90)
Q Consensus 76 i~~ll~~ 82 (90)
++.+-.+
T Consensus 432 lA~lTKN 438 (744)
T KOG0741|consen 432 LAALTKN 438 (744)
T ss_pred HHHHhcC
Confidence 7766554
No 30
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.35 E-value=1.2e-12 Score=105.36 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
++++|+.|+.- . .+++||+|||+++.||||++||||||..|+++.|+.++++++++.|+..
T Consensus 347 l~~lL~~l~~~--~--~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 347 LATFITWLSEK--K--SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred HHHHHHHHhcC--C--CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 45667777642 2 5689999999999999999999999999999999999999999999864
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.33 E-value=3e-12 Score=98.11 Aligned_cols=78 Identities=24% Similarity=0.197 Sum_probs=63.9
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCC---CccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIE---HPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~---~~l~~~i~~ 78 (90)
++.++|+.+||+... .++.||+|||+++.+|||++||||||+.|+|+.|+.+++..+++.|..... ...+.++.+
T Consensus 245 ~l~~ll~~ld~~~~~--~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~ 322 (364)
T TIGR01242 245 TLMQLLAELDGFDPR--GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK 322 (364)
T ss_pred HHHHHHHHhhCCCCC--CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 356788999998766 679999999999999999999999999999999999999999998875322 234555555
Q ss_pred Hhh
Q 038334 79 LLE 81 (90)
Q Consensus 79 ll~ 81 (90)
..+
T Consensus 323 ~t~ 325 (364)
T TIGR01242 323 MTE 325 (364)
T ss_pred HcC
Confidence 443
No 32
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.8e-11 Score=96.52 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCCCCCCCc---eEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC---CCccHHHH
Q 038334 3 LSRMLTFIDRLWLGYGDE---RIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII---EHPLFSKI 76 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~---~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i 76 (90)
-++||.+|||+.... ++ ++|+++||.|+.||.||+| ||..+|++++|++++++.|++..++.. +....+.+
T Consensus 333 KsELLvQmDG~~~t~-e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~l 409 (491)
T KOG0738|consen 333 KSELLVQMDGVQGTL-ENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDL 409 (491)
T ss_pred HHHHHHHhhcccccc-ccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHH
Confidence 379999999996532 33 5666799999999999999 999999999999999999999988753 33446666
Q ss_pred HHHhhc
Q 038334 77 EMLLEL 82 (90)
Q Consensus 77 ~~ll~~ 82 (90)
.+..+.
T Consensus 410 ae~~eG 415 (491)
T KOG0738|consen 410 AERSEG 415 (491)
T ss_pred HHHhcC
Confidence 665543
No 33
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3e-11 Score=94.37 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCcc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPL 72 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l 72 (90)
++||.+|.|+... .+|++|+++||-|+.||.|+.| ||+++||+++|++.+|..||+.++|...|.+
T Consensus 254 TEfLVQMqGVG~d-~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~L 319 (439)
T KOG0739|consen 254 TEFLVQMQGVGND-NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVL 319 (439)
T ss_pred HHHHHhhhccccC-CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCcccc
Confidence 6899999999764 2689999999999999999999 9999999999999999999999999998876
No 34
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.09 E-value=8.1e-11 Score=90.59 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
++.||++|||+..+ +|++.|++||+|+.||||+.- ||...|+|.+|+.+.+..|+..|..
T Consensus 239 VNALLTelDgi~en--eGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 239 VNALLTELDGIKEN--EGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred HHHHHHhccCcccC--CceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHH
Confidence 57899999999987 899999999999999999875 9999999999999999999999865
No 35
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.8e-10 Score=94.50 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEH 70 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~ 70 (90)
.++++..|||+.+. .++||+.+||+|+.||||+.| ||||+.+.++.|+..++.++++.+...-.+
T Consensus 305 ~sqlltL~dg~~~~--~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~ 369 (693)
T KOG0730|consen 305 VSQLLTLLDGLKPD--AKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNL 369 (693)
T ss_pred HHHHHHHHhhCcCc--CcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCC
Confidence 57899999999876 679999999999999999999 999999999999999999999988765433
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.07 E-value=2.8e-10 Score=94.40 Aligned_cols=62 Identities=26% Similarity=0.257 Sum_probs=56.7
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+++|++.|||+... ..++||+|||+++.||||+.||||||+.|+++.|+.++++++++.+..
T Consensus 299 ~~~Ll~~ld~l~~~--~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 299 VAQLLTLMDGLKGR--GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred HHHHHHHhhccccC--CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 46799999999776 678889999999999999999999999999999999999999998764
No 37
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2e-10 Score=90.42 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC---CCCccHHHHHHHh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI---IEHPLFSKIEMLL 80 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~---~~~~l~~~i~~ll 80 (90)
++|...+||+.+.....++|++|||||..||.|++| |+-+.++|+.|+.+++++|++.++.. +++-.+.+++.+.
T Consensus 215 ~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t 292 (386)
T KOG0737|consen 215 NEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMT 292 (386)
T ss_pred HHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhc
Confidence 588999999999844447777899999999999999 99999999999999999999999875 3566677777765
Q ss_pred hccc
Q 038334 81 ELKK 84 (90)
Q Consensus 81 ~~~~ 84 (90)
+.-.
T Consensus 293 ~GyS 296 (386)
T KOG0737|consen 293 EGYS 296 (386)
T ss_pred CCCc
Confidence 5433
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.3e-09 Score=84.06 Aligned_cols=68 Identities=16% Similarity=0.027 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCcc
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPL 72 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l 72 (90)
.+++|.++||..+...+.++||+|||+|+.+|.|++| ||-..++++.|+.+++..++.+++....|.+
T Consensus 273 ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l 340 (428)
T KOG0740|consen 273 KTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL 340 (428)
T ss_pred hhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc
Confidence 4689999999988766678888999999999999999 9999999999999999999999998655544
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.50 E-value=8.5e-08 Score=61.67 Aligned_cols=47 Identities=30% Similarity=0.455 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSY 51 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~ 51 (90)
++.|++.+|..... ..++++|+|||+++.+||+++| ||||.+|++++
T Consensus 86 ~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 86 LNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 56889999998764 2358999999999999999999 99999999874
No 40
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.4e-05 Score=63.44 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
.++++..+||+. .+. ++++..||++..+|||+.||||+|+.+++..|+.+.+..+...+
T Consensus 104 ~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 162 (494)
T COG0464 104 VAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIH 162 (494)
T ss_pred HHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHH
Confidence 578999999998 445 88888999999999999999999999999999999887766554
No 41
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00012 Score=58.11 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
++.+|++||-+... +++++..|+|--+.||-|+.- |=|.+.++|+|+.+++..|++..
T Consensus 282 VNalLTQlDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksc 339 (423)
T KOG0744|consen 282 VNALLTQLDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSC 339 (423)
T ss_pred HHHHHHHHHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHH
Confidence 57899999999988 889999999999999999996 89999999999999998888664
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00013 Score=59.53 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=41.7
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
...+++.+||+|+.||.|+-- |||-.|+|++|..+.+..++..||.
T Consensus 484 rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 484 RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred cceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHH
Confidence 457888899999999999875 9999999999999999999988875
No 43
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.17 E-value=0.00074 Score=57.05 Aligned_cols=43 Identities=28% Similarity=0.252 Sum_probs=39.4
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
++++|+|||.++.|||+|++ ||+ .|+|+.++.+.+++++++|+
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 57889999999999999998 996 68999999999999998886
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.77 E-value=0.0044 Score=45.51 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCcc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPL 72 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l 72 (90)
..|+..|+.- . ...++|++++..+ .++|+|.+ ||+.+|+|+.++.+++.+++++++......+
T Consensus 131 ~~Ll~~~e~~--~--~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l 198 (261)
T TIGR02881 131 DTLVKGMEDN--R--NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKL 198 (261)
T ss_pred HHHHHHHhcc--C--CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCcc
Confidence 4566666543 1 3455566554332 37889887 9999999999999999999999887543333
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=96.58 E-value=0.0041 Score=46.99 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
..|+..|+.- . .+++||++++..+ .++|+|.+ ||+.+|+|+.++.+++.+++.+++...
T Consensus 149 ~~L~~~me~~--~--~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 149 EILLQVMENQ--R--DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHhcC--C--CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 4566777642 2 4577777765322 23599998 999999999999999999999988643
No 46
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.49 E-value=0.005 Score=46.31 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCC--CCC---cccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNH--KAK---LDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~--~e~---lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
+.|+..|+.- . .++++|++++. ++. ++|+|.+ ||+.+|+|+.++.+.+..++.+++...
T Consensus 148 ~~Ll~~le~~--~--~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 148 EILLQVMENQ--R--DDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHhcC--C--CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 4667777632 2 46777777653 333 4899999 999999999999999999999988653
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.27 E-value=0.0029 Score=53.91 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=37.1
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
.++.+|++||.++ ..||||.| ||+ .|+++.|+.+++..+++.+
T Consensus 314 g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGL 361 (758)
T ss_pred CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHH
Confidence 5688999999876 47999999 997 7999999999988888753
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.12 E-value=0.011 Score=43.69 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=40.2
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
..++|++||++..+++++.. ||...++++.++.+.+++++.+..+.
T Consensus 129 ~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred CeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 47888999999999999886 89999999999999999998876653
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.99 E-value=0.012 Score=44.63 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=40.8
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
...+|++||++..++++|.. ||...++++.++.+.+.+++++..+..
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~ 196 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARIL 196 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 36788999999999999876 899999999999999999998876643
No 50
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.12 E-value=0.072 Score=40.39 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=33.0
Q ss_pred CceEEEEecC-----CCCCcccccCCCCcccceeecCCCCHH-HHHHHHHhhcC
Q 038334 19 DERIMIVKTN-----HKAKLDLTLLRPGHMDVHIHMSYCTPC-GFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN-----~~e~lDpAllRpGR~D~~I~~~~p~~~-~~~~l~~~~l~ 66 (90)
.+.++|+|+| .-..|..|+++ ||-..++++||+.+ ..+.+..++-+
T Consensus 153 ~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 153 PPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 4566677778 55667889998 99999999999544 44555555444
No 51
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.11 E-value=0.036 Score=40.98 Aligned_cols=59 Identities=19% Similarity=0.101 Sum_probs=44.4
Q ss_pred ceEEEEecCCC-----CCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHHHhhc
Q 038334 20 ERIMIVKTNHK-----AKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEMLLEL 82 (90)
Q Consensus 20 ~~ivi~tTN~~-----e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ll~~ 82 (90)
+..+|+|+|.. ..+++||++ || ..+++++|+.+.-.++++.+++..+ ...+.+-++...
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~~~-~~~~~iv~~~~~ 214 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDVAE-DSAATIVRLVRE 214 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCCCH-HHHHHHHHHHHH
Confidence 44578899975 256889998 88 7899999999999999998887533 445555555444
No 52
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.99 E-value=0.017 Score=49.77 Aligned_cols=42 Identities=14% Similarity=-0.024 Sum_probs=35.4
Q ss_pred CceEEEEecCCCCC-----cccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 19 DERIMIVKTNHKAK-----LDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 19 ~~~ivi~tTN~~e~-----lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
..+.+|+||+..+. +||||.| ||. .|++..|+.++...+++.
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRG 361 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHH
Confidence 46888999987654 8999999 995 799999999998888543
No 53
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.94 E-value=0.016 Score=48.80 Aligned_cols=43 Identities=14% Similarity=-0.014 Sum_probs=36.2
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
..+.+|++||..+ .+||||.| ||. .|++..|+.++..++++..
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGL 357 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHH
Confidence 4578899999744 47999999 997 7999999999998888743
No 54
>PRK06893 DNA replication initiation factor; Validated
Probab=94.57 E-value=0.039 Score=39.98 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=40.3
Q ss_pred HHHHhcCCCCCCCCceEEEEecC-CCCCcc---cccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 6 MLTFIDRLWLGYGDERIMIVKTN-HKAKLD---LTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 6 lL~~lDG~~~~~~~~~ivi~tTN-~~e~lD---pAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
|.+.++..... .+.++|+|+| .|+.++ |.|....+....+++..|+.+.+.+++++...
T Consensus 113 l~~l~n~~~~~--~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 113 IFDLFNRIKEQ--GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HHHHHHHHHHc--CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 33444444333 3455566555 576665 88887666788999999999999999876543
No 55
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.32 E-value=0.1 Score=44.75 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=37.1
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.++++|+|||..+ |+|||+. |++ .|.+...+.+...+++++|+-
T Consensus 464 s~v~~i~TaN~~~-i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCCC-CCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 4688899999875 9999996 997 578888889999999999884
No 56
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.31 E-value=0.045 Score=47.13 Aligned_cols=44 Identities=11% Similarity=-0.038 Sum_probs=37.4
Q ss_pred CceEEEEecCCCCC-----cccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKAK-----LDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e~-----lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.+.+|+||+..+. +|||+.| ||+ .|.++.|+.++...+++.+.
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHh
Confidence 46889999998884 8999999 998 59999999999888886543
No 57
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.02 E-value=0.1 Score=42.67 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=35.2
Q ss_pred eEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+++.+|||.|+.|+||+.+ |+ ..|+|...+.+.+..++++++.
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred EEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHH
Confidence 5556678899999999997 76 4788888888989999888764
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=0.11 Score=41.18 Aligned_cols=56 Identities=5% Similarity=-0.020 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|+-. + ++.++|++|++++.|.|+++. |. ..++|..|+.+...+.+....+
T Consensus 135 naLLk~LEep--~--~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~~ 190 (394)
T PRK07940 135 NALLKAVEEP--P--PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRDG 190 (394)
T ss_pred HHHHHHhhcC--C--CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhcC
Confidence 4567776632 2 457777777779999999986 55 6899999999998877764334
No 59
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.50 E-value=0.16 Score=35.11 Aligned_cols=56 Identities=13% Similarity=0.037 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+.||..|+- .+ +..++|++||+++.|+|++.. |. ..+++..|+.++....+... |.
T Consensus 114 ~~Ll~~le~--~~--~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~-gi 169 (188)
T TIGR00678 114 NALLKTLEE--PP--PNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ-GI 169 (188)
T ss_pred HHHHHHhcC--CC--CCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc-CC
Confidence 456777764 22 457788888888999999987 44 37999999999988888776 53
No 60
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.14 E-value=0.14 Score=39.90 Aligned_cols=68 Identities=7% Similarity=0.030 Sum_probs=42.4
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCC---cccccCCCCccc--ceeecCCCCHHHHHHHHHhhcCCCCCccHHHH
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAK---LDLTLLRPGHMD--VHIHMSYCTPCGFRMPASNYLQIIEHPLFSKI 76 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~---lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i 76 (90)
+++..++.+... +..+||.+++.|+. +++.+. +||. ..++++.|+.+++..+++..+......+-+++
T Consensus 220 ~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~--SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~ 292 (405)
T TIGR00362 220 EFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLR--SRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV 292 (405)
T ss_pred HHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhh--hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 355555555443 33444444445654 557766 4886 57999999999999999887764433333333
No 61
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.09 E-value=0.18 Score=39.24 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=35.4
Q ss_pred CceEEEEecCCCC-CcccccCCCCcccceeecCCCCH-HHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKA-KLDLTLLRPGHMDVHIHMSYCTP-CGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e-~lDpAllRpGR~D~~I~~~~p~~-~~~~~l~~~~l~ 66 (90)
...++++|+|-.+ .+.++|+. ||.++|.+++|.. +.+.+++++...
T Consensus 170 ~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 170 ARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred CCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 3456666777434 58889987 9999999999988 778888877544
No 62
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=0.19 Score=39.26 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
+.||..+.- .. ++.++|++|++++.|.|.++. |. ..|+|..|+.+...+.+...
T Consensus 150 NaLLKtLEE--Pp--~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 150 NALLKTLEE--PP--PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHhcC--CC--cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 567777773 33 678999999999999999885 66 78999999988877766553
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.87 E-value=0.18 Score=37.80 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..++.. + +..++|++||+++.+.+++.. |+ ..+++..|+.++....+..++.
T Consensus 135 ~~Ll~~le~~--~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 135 NALLKTLEEP--P--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred HHHHHHHhCC--c--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHH
Confidence 4566666542 2 467888899999999999876 55 4789999999998888876553
No 64
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=92.85 E-value=0.34 Score=36.70 Aligned_cols=63 Identities=6% Similarity=0.097 Sum_probs=48.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccC-CC--------------------CcccceeecCCCCHHHHHHHHH
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLL-RP--------------------GHMDVHIHMSYCTPCGFRMPAS 62 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAll-Rp--------------------GR~D~~I~~~~p~~~~~~~l~~ 62 (90)
..|-+.|||-.....+++++.+|+||-..+..-.- |. -||...|.|..|+.+..-++++
T Consensus 125 k~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~ 204 (249)
T PF05673_consen 125 KALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVR 204 (249)
T ss_pred HHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHH
Confidence 45667788877666688999999998554443222 22 3899999999999999999999
Q ss_pred hhcC
Q 038334 63 NYLQ 66 (90)
Q Consensus 63 ~~l~ 66 (90)
+|+.
T Consensus 205 ~~~~ 208 (249)
T PF05673_consen 205 HYAE 208 (249)
T ss_pred HHHH
Confidence 9984
No 65
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.67 E-value=0.18 Score=39.23 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=34.4
Q ss_pred ceEEEEecCCCC-CcccccCCCCcccceeecCCCCH-HHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKA-KLDLTLLRPGHMDVHIHMSYCTP-CGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e-~lDpAllRpGR~D~~I~~~~p~~-~~~~~l~~~~l~ 66 (90)
..++|+|+|-.+ .+.++|+. ||.+++.+++|+. +.+.+++++...
T Consensus 174 r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 174 RFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred CEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence 356666666434 68899998 9999999999986 777888877543
No 66
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.33 E-value=0.25 Score=38.78 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=33.8
Q ss_pred ceEEEEecCCCC-CcccccCCCCcccceeecCCCC-HHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKA-KLDLTLLRPGHMDVHIHMSYCT-PCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e-~lDpAllRpGR~D~~I~~~~p~-~~~~~~l~~~~l~ 66 (90)
..++|+|.|-.+ .+.++|+. ||.++|.+++|+ .+...+++++...
T Consensus 187 rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 187 RFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred CEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhhc
Confidence 345555555433 58899998 999999999998 5888888877543
No 67
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.26 E-value=0.15 Score=40.36 Aligned_cols=59 Identities=7% Similarity=0.048 Sum_probs=39.8
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCC---cccccCCCCccc--ceeecCCCCHHHHHHHHHhhcCC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAK---LDLTLLRPGHMD--VHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~---lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+++..++.+... ...++|.+++.|.. ++|+|. .||. ..+++..|+.+++.++++.....
T Consensus 232 ~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~--SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 232 EFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLR--SRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred HHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHH--hHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 455556655544 23344444445555 678866 3886 58999999999999999887653
No 68
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.25 E-value=0.14 Score=44.07 Aligned_cols=43 Identities=16% Similarity=-0.006 Sum_probs=35.7
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
..+.+|++||..+ .+|||+.| ||. .|+++.|+.+++..+++.+
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGL 348 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHH
Confidence 4578888998775 47999999 996 5899999999988888654
No 69
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.22 E-value=0.24 Score=36.74 Aligned_cols=42 Identities=14% Similarity=0.002 Sum_probs=33.9
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
.+..+|++||.++.++|++.. |+. .+.++.|+.+.+..+++.
T Consensus 130 ~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 130 KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHH
Confidence 356788999999999999986 774 689999998887766544
No 70
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.27 Score=42.80 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=50.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
..+||++=-.....+..+.+|++.+....|.|-|.-|++|+.+++++.|+..+|++++...+..
T Consensus 525 a~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 525 AAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred HHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 4455554333332223457788889999999999999999999999999999999999888764
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.72 E-value=0.73 Score=39.57 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=42.5
Q ss_pred HHHHHHhc-CCCC-CCC-----CceEEEEecCCC-------------------------CCcccccCCCCcccceeecCC
Q 038334 4 SRMLTFID-RLWL-GYG-----DERIMIVKTNHK-------------------------AKLDLTLLRPGHMDVHIHMSY 51 (90)
Q Consensus 4 s~lL~~lD-G~~~-~~~-----~~~ivi~tTN~~-------------------------e~lDpAllRpGR~D~~I~~~~ 51 (90)
+.||..|| |... ..| .+.++|+|||.- ..+.|.++ +|+|..|.|..
T Consensus 575 ~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl--~Rid~ii~f~~ 652 (758)
T PRK11034 575 NLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFR--NRLDNIIWFDH 652 (758)
T ss_pred HHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHH--ccCCEEEEcCC
Confidence 45677776 4321 111 367899999932 12445655 59999999999
Q ss_pred CCHHHHHHHHHhhcC
Q 038334 52 CTPCGFRMPASNYLQ 66 (90)
Q Consensus 52 p~~~~~~~l~~~~l~ 66 (90)
.+.+..++++..++.
T Consensus 653 L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 653 LSTDVIHQVVDKFIV 667 (758)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999877664
No 72
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=89.10 E-value=0.56 Score=37.71 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=34.6
Q ss_pred ceEEEEecCC-C---CCcccccCCCCccc--ceeecCCCCHHHHHHHHHhhcCC
Q 038334 20 ERIMIVKTNH-K---AKLDLTLLRPGHMD--VHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 20 ~~ivi~tTN~-~---e~lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+..+|+|||+ | ..+++.|.. ||. ..+.+..|+.+.+.+++++....
T Consensus 235 ~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 235 GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 3456666665 4 456788886 885 88999999999999999876543
No 73
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.04 E-value=1.3 Score=33.39 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=36.8
Q ss_pred CceEEEEecCCCC---CcccccCCCCccc-ceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKA---KLDLTLLRPGHMD-VHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e---~lDpAllRpGR~D-~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.++.+|++||.++ .++|.+.+ ||. ..|+|+.++.+++.++++..+.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 4578888999875 58888765 554 6799999999999999987764
No 74
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=0.65 Score=40.73 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=41.4
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
..+++|+||+..+.+.|.+.+ -|=..|.|+.|+.++|.++++-|+..
T Consensus 532 ~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 532 PPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred CceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 689999999999999998876 56678999999999999999988764
No 75
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=88.30 E-value=0.76 Score=38.16 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=34.6
Q ss_pred ceEEEEecCCCC---CcccccCCCCcccceeecCCC-CHHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHKA---KLDLTLLRPGHMDVHIHMSYC-TPCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~e---~lDpAllRpGR~D~~I~~~~p-~~~~~~~l~~~~l 65 (90)
...+|+|+|..+ .|.++|+. ||+.+|.+.++ +.+.+.+++++++
T Consensus 127 ~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 127 KFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred ceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 457778888765 78899998 99999999865 5555788888765
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.11 E-value=1.4 Score=35.80 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
..||..++.. + +..++|++||.++.++|++.. |+ ..++|..++.+.....++...
T Consensus 135 ~~LLk~LE~p--~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 135 NALLKTLEEP--P--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred HHHHHHHHhC--C--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHH
Confidence 3455555532 2 457778888889999999986 44 378999999988777776654
No 77
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.03 E-value=1.7 Score=33.22 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
+.++..++.. + ...++|++||.++.+.|++..-++ .+++..++.++....+...
T Consensus 126 ~~ll~~le~~--~--~~~~~Il~~~~~~kl~~~l~sr~~---~v~~~~~~~~~l~~~l~~~ 179 (367)
T PRK14970 126 NAFLKTLEEP--P--AHAIFILATTEKHKIIPTILSRCQ---IFDFKRITIKDIKEHLAGI 179 (367)
T ss_pred HHHHHHHhCC--C--CceEEEEEeCCcccCCHHHHhcce---eEecCCccHHHHHHHHHHH
Confidence 3455555542 2 456778888889999999875343 5889999888877666553
No 78
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.06 E-value=1.1 Score=27.83 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=23.1
Q ss_pred CceEEEEecCCCC--CcccccCCCCcccceeecC
Q 038334 19 DERIMIVKTNHKA--KLDLTLLRPGHMDVHIHMS 50 (90)
Q Consensus 19 ~~~ivi~tTN~~e--~lDpAllRpGR~D~~I~~~ 50 (90)
.+..+|++||... .+++.+. .|++.+|+++
T Consensus 119 ~~~~ii~~~~~~~~~~~~~~~~--~r~~~~i~~~ 150 (151)
T cd00009 119 ENVRVIGATNRPLLGDLDRALY--DRLDIRIVIP 150 (151)
T ss_pred CCeEEEEecCccccCCcChhHH--hhhccEeecC
Confidence 4678888999877 6777766 4999888875
No 79
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=86.74 E-value=1.2 Score=37.08 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=39.9
Q ss_pred ceEEEE-ecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHHHh
Q 038334 20 ERIMIV-KTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEMLL 80 (90)
Q Consensus 20 ~~ivi~-tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ll 80 (90)
.+++|+ |||.++.++|+|.. |+. .+++...+.+....++++++......+-++..+++
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L 381 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELI 381 (615)
T ss_pred eEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 355555 56678999999875 886 57888899999999998876633223334444444
No 80
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.59 E-value=1 Score=38.06 Aligned_cols=71 Identities=4% Similarity=-0.028 Sum_probs=45.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCC----CCcccccCCCCcc--cceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHH
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHK----AKLDLTLLRPGHM--DVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEM 78 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~----e~lDpAllRpGR~--D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 78 (90)
+|.+.++.+... +.-+|+|+|++ ..+++.|.. || -..+++..||.+++.+++++......-.+-+++.+
T Consensus 398 eLF~l~N~l~e~---gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~ 472 (617)
T PRK14086 398 EFFHTFNTLHNA---NKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLE 472 (617)
T ss_pred HHHHHHHHHHhc---CCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 355555555443 23355677764 356788775 77 55679999999999999988765443343344433
Q ss_pred Hh
Q 038334 79 LL 80 (90)
Q Consensus 79 ll 80 (90)
+|
T Consensus 473 yL 474 (617)
T PRK14086 473 FI 474 (617)
T ss_pred HH
Confidence 33
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.13 E-value=3.1 Score=32.60 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+.||..+.- .+ ++.++|++|++++.+.|.+.. |. .+|.|..++.+...+.+....+.
T Consensus 159 naLLK~LEe--pp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~ 215 (365)
T PRK07471 159 NALLKVLEE--PP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD 215 (365)
T ss_pred HHHHHHHhc--CC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc
Confidence 455555542 22 467888999999999888754 44 58999999999988888876543
No 82
>smart00350 MCM minichromosome maintenance proteins.
Probab=85.91 E-value=1.6 Score=35.50 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=34.4
Q ss_pred ceEEEEecCCCC-------------CcccccCCCCcccceeec-CCCCHHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHKA-------------KLDLTLLRPGHMDVHIHM-SYCTPCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~e-------------~lDpAllRpGR~D~~I~~-~~p~~~~~~~l~~~~l 65 (90)
..-+|+|+|-.+ .|+|+++- |||....+ ++|+.+..+.++.+.+
T Consensus 343 ~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 343 RCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 456778888543 69999998 99996555 8999999888887743
No 83
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=84.96 E-value=1.3 Score=36.16 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.3
Q ss_pred CceEEEEecCCCC----CcccccCCCCcccceeecC
Q 038334 19 DERIMIVKTNHKA----KLDLTLLRPGHMDVHIHMS 50 (90)
Q Consensus 19 ~~~ivi~tTN~~e----~lDpAllRpGR~D~~I~~~ 50 (90)
+++.||+|+|..| .+|+||.| ||.. |++.
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~ 356 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIE 356 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHh--hhhe-EEec
Confidence 6899999999988 89999999 9854 5554
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.82 E-value=2.3 Score=34.94 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|+- .+ +..++|++|+.++.+.+++.. |. ..++|..++.+.....++..+.
T Consensus 146 naLLk~LEe--pp--~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 146 NALLKTLEE--PP--PHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred HHHHHHHhh--cC--CCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHH
Confidence 345555552 22 567888899999999999885 54 4688898998888777776654
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.64 E-value=2.3 Score=34.96 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.- .. ..+++|++||.++.|.|+++. |. .+++|..++.+...+.+++.+.
T Consensus 139 NALLKtLEE--Pp--~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 139 NALLKTLEE--PP--AHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred HHHHHHhhc--CC--CceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHH
Confidence 456666643 22 568888999999999999885 55 3578888888777776666543
No 86
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.13 E-value=2.7 Score=32.47 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=39.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.||..+.- .+ +...+|++||.++.+.+++.- |. ..++|..++.++....+...+
T Consensus 138 aLLk~lEe--~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 138 ALLKTLEE--PP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred HHHHHHhc--CC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 45555543 22 457788888889999988763 55 678999999998887776644
No 87
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.99 E-value=0.57 Score=30.53 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.0
Q ss_pred ceEEEEecCCCC----CcccccCCCCcc
Q 038334 20 ERIMIVKTNHKA----KLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e----~lDpAllRpGR~ 43 (90)
+..+|+|+|..+ .+++||++ ||
T Consensus 114 ~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 114 NFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 478899999988 99999997 65
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.99 E-value=2.4 Score=35.91 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=36.1
Q ss_pred ceEEEEecCCCC-------------------------CcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKA-------------------------KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e-------------------------~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.++|+|||... .+.|.++ +|||..|.|...+.+..++++.+++.
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 578999999631 2455555 69999999999999999999988765
No 89
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.84 E-value=1.3 Score=37.96 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=42.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.- .. +++++|++||.++.|.|.++- |. .+++|..++.+...+.+++.++
T Consensus 142 NALLKTLEE--PP--~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 142 NAMLKTLEE--PP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred HHHHHhhcc--CC--CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHH
Confidence 456666553 22 568899999999999999884 55 6789999999888887776654
No 90
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.75 E-value=1.3 Score=30.93 Aligned_cols=45 Identities=7% Similarity=-0.061 Sum_probs=29.2
Q ss_pred EEEEecC-CCCCcc---cccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 22 IMIVKTN-HKAKLD---LTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 22 ivi~tTN-~~e~lD---pAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.+|+||| .+..++ +.|..-.+...+|+++.++.++...+++++..
T Consensus 125 ~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 125 RLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred eEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 4555555 444433 55654122357899999999998888887643
No 91
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=83.34 E-value=5.4 Score=31.10 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
+.||..+.-. + .+.++|+.|++|+.+.|.+.- |+ .++++..++.+.....+.+.
T Consensus 159 naLLk~LEEp--p--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 159 NAILKTLEEP--P--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred HHHHHHHhcC--C--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 4567777542 2 456777778889999988753 77 69999999999998888873
No 92
>PRK08727 hypothetical protein; Validated
Probab=83.32 E-value=1.3 Score=32.08 Aligned_cols=42 Identities=7% Similarity=-0.013 Sum_probs=31.6
Q ss_pred EEEEecC-CCCCc---ccccCCCCcc--cceeecCCCCHHHHHHHHHhhc
Q 038334 22 IMIVKTN-HKAKL---DLTLLRPGHM--DVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 22 ivi~tTN-~~e~l---DpAllRpGR~--D~~I~~~~p~~~~~~~l~~~~l 65 (90)
-+|+|+| .|+.+ +|+|.. || -..++++.|+.+.+.+++++..
T Consensus 128 ~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 128 TLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred eEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHH
Confidence 3556555 67765 688885 64 4689999999999999998743
No 93
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=83.14 E-value=1.3 Score=35.43 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHhcCCCCCCCCceEEEEecC-CCCC---cccccCCCCcc--cceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHH
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTN-HKAK---LDLTLLRPGHM--DVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEM 78 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN-~~e~---lDpAllRpGR~--D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 78 (90)
+++..++.+... .. .+|+||| .|+. +++.+.- || ...+.+..||.+++.+++++........+-+++..
T Consensus 215 elf~~~n~l~~~--~k-~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~ 289 (440)
T PRK14088 215 ELFHTFNELHDS--GK-QIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLN 289 (440)
T ss_pred HHHHHHHHHHHc--CC-eEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 355555555544 23 4555554 5555 4455553 44 46889999999999999988765433333333333
No 94
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=83.01 E-value=3.2 Score=34.25 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=39.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..+... + +.+++|++|+.++.|.|+++. |. ..+.|..++.++....+...+
T Consensus 137 naLLKtLEep--p--~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 137 NALLKTLEEP--P--AHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred HHHHHHhcCC--C--CCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHH
Confidence 4566666532 2 567888889999999999874 44 257788888888777666544
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=82.86 E-value=4.7 Score=29.80 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=31.8
Q ss_pred eEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
..+|++||++..+.++|.. |. ..+++..|+.+.+...+...+.
T Consensus 156 ~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 156 CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 4566777777788888765 43 4689999999888888877544
No 96
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=82.44 E-value=4.4 Score=31.31 Aligned_cols=54 Identities=6% Similarity=0.025 Sum_probs=39.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
+.||..+.- ++ ++.++|++|++++.|.|.++= |. ..++|..|+.+...+.+...
T Consensus 124 NaLLK~LEE--Pp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 124 NALLKSLEE--PS--GDTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred HHHHHHHhC--CC--CCeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHh
Confidence 455665553 23 568889999999999999883 44 24899999888776666554
No 97
>PRK09087 hypothetical protein; Validated
Probab=81.83 E-value=2.1 Score=31.12 Aligned_cols=58 Identities=3% Similarity=0.007 Sum_probs=36.5
Q ss_pred HHHHhcCCCCCCCCceEEEEecC-CCCC---cccccCCCCccc--ceeecCCCCHHHHHHHHHhhcCCC
Q 038334 6 MLTFIDRLWLGYGDERIMIVKTN-HKAK---LDLTLLRPGHMD--VHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 6 lL~~lDG~~~~~~~~~ivi~tTN-~~e~---lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
|...++.+... +..+|+|++ .|.. ..|.|.= |+. ..+++..|+.+.+.+++++++...
T Consensus 106 lf~l~n~~~~~---g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 106 LFHLINSVRQA---GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred HHHHHHHHHhC---CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 44444444443 334455444 4443 3566653 665 689999999999999998877543
No 98
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=81.80 E-value=4.1 Score=35.74 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.-- . +.+++|++||.+++|.+.++- |+ .+++|...+.+.....+.+.++
T Consensus 137 NALLKtLEEP--P--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~ 192 (830)
T PRK07003 137 NAMLKTLEEP--P--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILG 192 (830)
T ss_pred HHHHHHHHhc--C--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHH
Confidence 4456655532 2 468899999999999999874 55 6888998888888777777664
No 99
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=81.64 E-value=5.3 Score=31.28 Aligned_cols=44 Identities=5% Similarity=-0.023 Sum_probs=34.3
Q ss_pred ceEEEEecCCCCC------------cccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHKAK------------LDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~e~------------lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.-.+|+|+|..+. ++.|++- ||-+.+.++||+.+.-.+|+....
T Consensus 178 ~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 178 AFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 4567888997663 4667775 888889999999999888887654
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.76 E-value=3.2 Score=35.15 Aligned_cols=55 Identities=13% Similarity=0.263 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..|+- .. ...++|++||.++.+.+.++. |+ .+|+|..++.++....+...+
T Consensus 137 naLLk~LEE--P~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 137 NALLKTLEE--PP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred HHHHHHhhc--cC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHH
Confidence 456666553 22 467888999999999988774 55 478999998888777776543
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=80.03 E-value=3 Score=29.48 Aligned_cols=56 Identities=7% Similarity=0.075 Sum_probs=33.0
Q ss_pred HHHHhcCCCCCCCCceEEEEecCCCC---CcccccCCCCcc--cceeecCCCCHHHHHHHHHhhc
Q 038334 6 MLTFIDRLWLGYGDERIMIVKTNHKA---KLDLTLLRPGHM--DVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 6 lL~~lDG~~~~~~~~~ivi~tTN~~e---~lDpAllRpGR~--D~~I~~~~p~~~~~~~l~~~~l 65 (90)
|+..++..... ...++|++++.+. .+.+.|.- |+ ...|+++.|+.+....++..+.
T Consensus 110 L~~~~~~~~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 110 LFNLFNRVRAH--GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred HHHHHHHHHHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 44445544333 3345666666432 23344442 55 4789999999988777776643
No 102
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.91 E-value=6.1 Score=32.37 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..+.-- + +..++|++||+++.+.+++.. |. .+++|..++.+.....+...+
T Consensus 134 naLLk~LEep--~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 134 NALLKTLEEP--P--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred HHHHHHHHhC--C--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHH
Confidence 4455555532 2 457888899999999999885 44 368999999999877776654
No 103
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=79.10 E-value=8.4 Score=29.84 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=45.0
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccC-CC-------------------CcccceeecCCCCHHHHHHHHHhh
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLL-RP-------------------GHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAll-Rp-------------------GR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
.|=..|||=.....++|++.+|+||-..|..-.. ++ -||...+.|..|+.+..-+|+.+|
T Consensus 159 ~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 159 ALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred HHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHH
Confidence 3445678765555578998899998666653222 22 388999999999999999999887
Q ss_pred c
Q 038334 65 L 65 (90)
Q Consensus 65 l 65 (90)
.
T Consensus 239 a 239 (287)
T COG2607 239 A 239 (287)
T ss_pred H
Confidence 5
No 104
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=79.10 E-value=6.2 Score=29.60 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..+.- ++ ++.++|++|++++.|-|.+.- |. ..++|..++.+.....+...+
T Consensus 111 naLLK~LEe--pp--~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 111 NAFLKTIEE--PP--KGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHHHHhcC--CC--CCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 346666653 23 578888888999999998874 33 489999998888776665544
No 105
>PRK04195 replication factor C large subunit; Provisional
Probab=79.03 E-value=5.6 Score=31.91 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=32.9
Q ss_pred eEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.-+|++||.+..+++.-+| +.-..|+|..|+...+...++..+.
T Consensus 131 ~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 131 QPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred CCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHH
Confidence 4567789999888874344 3345799999999998888877654
No 106
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=79.00 E-value=5.8 Score=29.01 Aligned_cols=44 Identities=9% Similarity=-0.026 Sum_probs=33.3
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
...+|+++|.+..+.+++.. |.. .++|..++.++....+..++.
T Consensus 132 ~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 132 NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHH
Confidence 45677788888888777765 443 489999999998888877764
No 107
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=78.96 E-value=2.3 Score=25.79 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCC
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYC 52 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p 52 (90)
.+..+|+++|......+..+++ |+|.++.+..+
T Consensus 115 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 115 KNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred CCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 4578888888755556666666 99999988765
No 108
>PRK13531 regulatory ATPase RavA; Provisional
Probab=77.61 E-value=4.4 Score=33.58 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=39.3
Q ss_pred HHHHHHHh-cCCCCC-----CCCceEEEEecCCCC---CcccccCCCCcccceeecCCCC-HHHHHHHHHhh
Q 038334 3 LSRMLTFI-DRLWLG-----YGDERIMIVKTNHKA---KLDLTLLRPGHMDVHIHMSYCT-PCGFRMPASNY 64 (90)
Q Consensus 3 ls~lL~~l-DG~~~~-----~~~~~ivi~tTN~~e---~lDpAllRpGR~D~~I~~~~p~-~~~~~~l~~~~ 64 (90)
.+.||..| ++-... .-+-++++.|||... ...+|++= ||-++|.+++|+ .+.+++|+...
T Consensus 124 QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 124 LNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred HHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 46677777 222111 013468888998432 23357775 898899999997 56778888764
No 109
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=77.32 E-value=6.3 Score=30.01 Aligned_cols=45 Identities=11% Similarity=-0.089 Sum_probs=33.2
Q ss_pred ceEEEEecCCC---CCcccccCCCCccc-ceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHK---AKLDLTLLRPGHMD-VHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~---e~lDpAllRpGR~D-~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
++.+|+++|.. +.+||.+.. |+. ..|+|+.++.++.++++...+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 57788888865 457776543 442 5789999999999998877653
No 110
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.20 E-value=5.7 Score=31.19 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=33.5
Q ss_pred ceEEEEecC--CCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTN--HKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN--~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.+++|++|+ ....++|+|+. |+ ..++|..++.+....++.+.+.
T Consensus 120 ~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 120 TITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred cEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence 456666543 34689999997 66 6789999999999988888654
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=75.80 E-value=2.2 Score=36.69 Aligned_cols=41 Identities=15% Similarity=-0.081 Sum_probs=32.9
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHH
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPAS 62 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~ 62 (90)
..+.+|++||..+ ..||++.| ||.. |.+..|+.++..+|++
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr 351 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILF 351 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHH
Confidence 4578888888765 47999999 9975 8999999888777764
No 112
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=75.75 E-value=4.5 Score=34.86 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.-. . +.+++|++||.+..+.+.++ +|+ ..+.|..++.+.....+.+.+.
T Consensus 137 NALLKtLEEP--p--~~v~fILaTtd~~kL~~TIr--SRC-~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 137 NAMLKTLEEP--P--EHVKFILATTDPHKVPVTVL--SRC-LQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred HHHHHHHHhC--C--CCcEEEEEeCCccccchHHH--HHH-hhhhcCCCCHHHHHHHHHHHHH
Confidence 3466666532 2 45788889999999988876 576 6677888888887777766554
No 113
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=75.47 E-value=7 Score=33.74 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
+.||..|.-. + +.+++|++|+.++.|.|+++. |. .+++|..++.+.....+...
T Consensus 136 NALLKtLEEP--P--~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 136 NALLKTLEEP--P--KHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred HHHHHHhhcC--C--CceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHH
Confidence 4456665532 2 567888899999999999885 55 47899999988877666553
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.63 E-value=6.6 Score=31.99 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..+... + +..++|++||.++.+.+++.. |. ..++|..++.+.....+...+
T Consensus 137 naLLk~LEep--p--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 137 NALLKTLEEP--P--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred HHHHHHHhcC--C--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHH
Confidence 3455555532 2 457788888889999998875 44 368999999998887776644
No 115
>PRK08084 DNA replication initiation factor; Provisional
Probab=74.44 E-value=3.4 Score=29.97 Aligned_cols=41 Identities=10% Similarity=-0.045 Sum_probs=29.6
Q ss_pred eEEEEecCCCCC---cccccCCCCccc--ceeecCCCCHHHHHHHHHh
Q 038334 21 RIMIVKTNHKAK---LDLTLLRPGHMD--VHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 21 ~ivi~tTN~~e~---lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~ 63 (90)
.+++.+++.|.. +.|.|.- |+- ..+++..|+.+++.+++++
T Consensus 133 ~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred eEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHH
Confidence 344444445555 5788874 765 7899999999998888876
No 116
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=73.52 E-value=9 Score=30.80 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
.||..|+-. + +..++|++||+++.|.+++.. |. ..++|..++.+.....+...
T Consensus 140 ~LLk~lEep--~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~ 192 (451)
T PRK06305 140 SLLKTLEEP--P--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALI 192 (451)
T ss_pred HHHHHhhcC--C--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 355555532 2 467888889999999999886 44 36899999988877666554
No 117
>PRK10865 protein disaggregation chaperone; Provisional
Probab=72.87 E-value=4.3 Score=35.25 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred ceEEEEecCCC-------------------------CCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHK-------------------------AKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~-------------------------e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.++|+|||.. ..+.|+|+ +|+|..|.|..++.+....++.+++.
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELl--nRld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFI--NRIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHH--HhCCeeEecCCCCHHHHHHHHHHHHH
Confidence 45789999973 23456777 49999999999999999888887764
No 118
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=71.54 E-value=4.9 Score=34.71 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=35.0
Q ss_pred CceEEEEecCCCCC-------------------------cccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKAK-------------------------LDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e~-------------------------lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.+.+||+|||.... +.|.|+ +|+|..|.|..++.+....++..++.
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHHH
Confidence 35789999997221 235555 59999999999999999888877654
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=70.35 E-value=11 Score=32.92 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||+.|.-. . +..++|++||.+++|-++|.- |. .+++|..++.+.....+...+
T Consensus 138 NaLLK~LEEp--P--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 138 NALLKIVEEP--P--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred HHHHHHHhCC--C--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHH
Confidence 4566666643 2 468888989999999888774 32 478898888888777776655
No 120
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=70.09 E-value=6 Score=34.78 Aligned_cols=43 Identities=26% Similarity=0.259 Sum_probs=32.7
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.+++|+|.|..+.|+|+|+= |+.+ |+++--..+.-..++++||
T Consensus 554 kVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhh
Confidence 68999999999999999995 7654 6665445556566776665
No 121
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=69.51 E-value=14 Score=31.49 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..|.- .. +.+++|++|+.++.|-+.++- |. ..++|..++.+.....+.+.+
T Consensus 137 NALLKtLEE--Pp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 137 NALLKTLEE--PP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred HHHHHHHHc--CC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHH
Confidence 445555542 22 467788889999999988774 54 789999999998888777665
No 122
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=69.36 E-value=8.5 Score=32.59 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.||..|+-. + +..++|++|+.++.|.|+++. |. ..++|..++.+.....+...+
T Consensus 138 aLLKtLEEP--p--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 138 ALLKTLEEP--P--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred HHHHHHHhC--C--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHH
Confidence 455555532 2 467888899999999999886 44 368999999888776666644
No 123
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=69.34 E-value=10 Score=31.74 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=32.1
Q ss_pred ceEEEEecCCC-CCcccccCCCCcccceeecCCCC-HHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHK-AKLDLTLLRPGHMDVHIHMSYCT-PCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~-e~lDpAllRpGR~D~~I~~~~p~-~~~~~~l~~~~l 65 (90)
...+|+|+|.. ..|.++|+- ||+++|.++++. .+.+.+++.+.+
T Consensus 169 ~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 169 RFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred CeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 46777888843 357888888 999999999876 455666665543
No 124
>PLN03025 replication factor C subunit; Provisional
Probab=68.18 E-value=9 Score=28.85 Aligned_cols=44 Identities=7% Similarity=-0.004 Sum_probs=33.5
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
....+|++||.++.+.|+|.. |. ..++|..++.+.....+....
T Consensus 128 ~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 128 NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVV 171 (319)
T ss_pred CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHH
Confidence 345678899999999999875 44 478999999888777666544
No 125
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.85 E-value=9.1 Score=31.75 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..|.- .. +.+++|++||.++.|.+.++- |. ..++|..++.+.....+...+
T Consensus 137 naLLk~LEe--pp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 137 NALLKTLEE--PP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred HHHHHHHHc--CC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHH
Confidence 345555553 23 568889999999999999873 32 357777787777666555543
No 126
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.01 E-value=13 Score=31.23 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.- .+ +.+++|++|+.++.|.+++.- |. .+++|..++.+.....+..++.
T Consensus 136 NALLK~LEE--pp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 136 NALLKIVEE--PP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred HHHHHHHhc--CC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 345555553 23 568889999999999999874 32 5788888888887777766544
No 127
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=66.86 E-value=13 Score=31.01 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..+.- .+ +..++|++|+.++.|.+++.. |.- .++|..++.+.....++..+
T Consensus 137 naLLK~LEe--pp--~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 137 NALLKTIEE--PP--PYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred HHHHHhhcc--CC--CCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHH
Confidence 345555552 22 568888999999999999875 433 57888888888777766544
No 128
>PRK05642 DNA replication initiation factor; Validated
Probab=66.68 E-value=9.8 Score=27.58 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHhcCCCCCCCCceEEEEecCCCCCc---ccccCCCCcc--cceeecCCCCHHHHHHHHHh
Q 038334 6 MLTFIDRLWLGYGDERIMIVKTNHKAKL---DLTLLRPGHM--DVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 6 lL~~lDG~~~~~~~~~ivi~tTN~~e~l---DpAllRpGR~--D~~I~~~~p~~~~~~~l~~~ 63 (90)
|...++....+ +..+++.++..|..+ .|.|.- |+ -..+.+..|+.+.+..+++.
T Consensus 119 Lf~l~n~~~~~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 119 LFHLFNRLRDS--GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred HHHHHHHHHhc--CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHH
Confidence 45555554443 344444444455433 577764 65 46788899999998888874
No 129
>PRK06620 hypothetical protein; Validated
Probab=66.28 E-value=9 Score=27.58 Aligned_cols=45 Identities=7% Similarity=0.119 Sum_probs=30.7
Q ss_pred CceEEEEecCCCCC--cccccCCCCccc--ceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKAK--LDLTLLRPGHMD--VHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e~--lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+..+++.++..|.. + |+|.= |+. ..+.+..|+.+.+++++++...
T Consensus 113 g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 113 QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 34566666666554 4 66552 654 3689999999999888877654
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.28 E-value=15 Score=30.99 Aligned_cols=53 Identities=8% Similarity=0.103 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
+.||..|+- .. +..++|++||+++.+-|++.. |. ..++|..++.+.....+..
T Consensus 139 naLLK~LEe--Pp--~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 139 NALLKTLEE--PP--PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred HHHHHHHhc--CC--cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHH
Confidence 456676663 22 467888888999999999873 33 3467777777765554443
No 131
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.74 E-value=10 Score=31.15 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..+.-. + +..++|++||.++.+.+.++- |. ..++|..++.+.....+.+.+
T Consensus 137 naLLK~LEep--p--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 137 NAMLKTLEEP--P--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred HHHHHHHhCC--C--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHH
Confidence 4566666542 2 467888888889888888653 44 678999998888777666655
No 132
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=65.69 E-value=15 Score=28.39 Aligned_cols=53 Identities=8% Similarity=0.069 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
+.||..+.- ++ ++.++|+.|++++.|-|.++= |. .++.|..|+.+...+.+..
T Consensus 126 NaLLKtLEE--Pp--~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 126 NALLKTLEE--PA--PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHHHHhcC--CC--CCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 345666553 23 678999999999999999773 33 3788999998887666544
No 133
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.53 E-value=17 Score=30.75 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=34.2
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+..++|++|+.+..+.+.++- |. ..++|..++.+.....++..+.
T Consensus 153 ~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 153 EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHH
Confidence 457888888889999888764 44 6789988888887777766543
No 134
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=63.92 E-value=16 Score=27.54 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=34.4
Q ss_pred eEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
--+|+||++...|.+.|.- ||-...++.+-+.+...+++.+..+.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~ 194 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARI 194 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHC
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHH
Confidence 4678899999999999885 99999999999999999999775443
No 135
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=63.88 E-value=17 Score=32.95 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=35.0
Q ss_pred CceEEEEecCC---CCCcccccCCCCcccc-eeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNH---KAKLDLTLLRPGHMDV-HIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~---~e~lDpAllRpGR~D~-~I~~~~p~~~~~~~l~~~~l~ 66 (90)
..++||+.+|. ++.|+|.+.- |+-. .|.|...+.+++++|+..-+.
T Consensus 901 SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHH
Confidence 45788888885 7788888764 4332 488899999999999977655
No 136
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=63.07 E-value=4.6 Score=32.91 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=23.1
Q ss_pred cccCCCCc-ccceeecCCCCHHHHHHHH--HhhcC
Q 038334 35 LTLLRPGH-MDVHIHMSYCTPCGFRMPA--SNYLQ 66 (90)
Q Consensus 35 pAllRpGR-~D~~I~~~~p~~~~~~~l~--~~~l~ 66 (90)
|-|||||| +|..|.|+...-..++++. ..|..
T Consensus 298 ~~lLrP~R~VDlIisfD~Sa~~pf~~l~~~~~~c~ 332 (430)
T cd07202 298 PLVLPPVRNTDLILSFDFSEGDPFETIKDTAEYCR 332 (430)
T ss_pred ccccCCCCcccEEEEeecCCCchhHHHHHHHHHHH
Confidence 56899999 9999999876665555443 34443
No 137
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.07 E-value=22 Score=31.85 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.- .. +.+++|++||.+..|-++++- |. .+++|...+.+..+..+.+.+.
T Consensus 137 NALLKtLEE--PP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~ 192 (944)
T PRK14949 137 NALLKTLEE--PP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILT 192 (944)
T ss_pred HHHHHHHhc--cC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHH
Confidence 345555542 12 457788889899999888774 44 6789999998888877777654
No 138
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=61.95 E-value=17 Score=27.82 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
.||..|.- .+ +..++|++|+.++.|-|++.--+ ..++|..|+.+...+.+..
T Consensus 129 aLLK~LEE--Pp--~~~~~Il~t~~~~~ll~TIrSRc---~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 129 SLLKFLEE--PS--GGTTAILLTENKHQILPTILSRC---QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHhcC--CC--CCceEEEEeCChHhCcHHHHhhc---eeeeCCCCCHHHHHHHHHH
Confidence 45555553 23 56888889999999999987423 4689999988887666654
No 139
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.75 E-value=14 Score=30.34 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.-. + +.+++|++|+.++.|.+.++. |. ..++|..++.+.....+...+.
T Consensus 134 NaLLK~LEeP--p--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~ 189 (491)
T PRK14964 134 NALLKTLEEP--A--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAK 189 (491)
T ss_pred HHHHHHHhCC--C--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHH
Confidence 4556666532 2 568888999999999998875 33 4588888888887777766544
No 140
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=60.25 E-value=13 Score=32.52 Aligned_cols=43 Identities=26% Similarity=0.209 Sum_probs=34.8
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.+++|+|.|..+.|++.|+= |++. |+++--..+.-..++++||
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RMEi-I~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RMEV-IRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhc--ceee-eeecCCChHHHHHHHHHhc
Confidence 68999999999999999995 7654 7776666677778888776
No 141
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=58.36 E-value=25 Score=29.59 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=34.4
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+..++|++|+.++++-+.+.- |. ..++|..++.+.....+...+.
T Consensus 161 ~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~ 205 (598)
T PRK09111 161 PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAA 205 (598)
T ss_pred CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHH
Confidence 567888888988888888764 44 4689999998887777766543
No 142
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.06 E-value=19 Score=31.21 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.-. + +.+.+|++||.+..+.+.++. |. .+++|..++.+.....+++.+.
T Consensus 136 NALLKtLEEP--P--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~ 191 (702)
T PRK14960 136 NALLKTLEEP--P--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILE 191 (702)
T ss_pred HHHHHHHhcC--C--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHH
Confidence 3455555532 2 457888888989999888874 55 5788988888887777765543
No 143
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=57.59 E-value=5 Score=33.60 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=22.3
Q ss_pred cccCCCCc-ccceeecCCCCHHHHHH--HHHhhcCC
Q 038334 35 LTLLRPGH-MDVHIHMSYCTPCGFRM--PASNYLQI 67 (90)
Q Consensus 35 pAllRpGR-~D~~I~~~~p~~~~~~~--l~~~~l~~ 67 (90)
|-|+|||| +|+.|.|++.--.+++. ++..|...
T Consensus 387 ppllrP~R~VDlIisfd~Sa~~~~~~L~~~~~y~~~ 422 (541)
T cd07201 387 PPLLRPERKVDVILSLNYSLGSQFEPLKQASEYCSE 422 (541)
T ss_pred CcccCCCCcccEEEEeccccCCcchHHHHHHHHHHH
Confidence 56789999 99999998765444333 34555543
No 144
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=56.96 E-value=25 Score=27.15 Aligned_cols=56 Identities=11% Similarity=-0.040 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.- ++ ++.++|..|++++.|-|.++= |. ..+.|..|+.+...+.+....+
T Consensus 126 NaLLKtLEE--Pp--~~t~fiL~t~~~~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~~~~ 181 (334)
T PRK07993 126 NALLKTLEE--PP--ENTWFFLACREPARLLATLRS--RC-RLHYLAPPPEQYALTWLSREVT 181 (334)
T ss_pred HHHHHHhcC--CC--CCeEEEEEECChhhChHHHHh--cc-ccccCCCCCHHHHHHHHHHccC
Confidence 356666553 33 678999999999999999873 33 2578999988887765544334
No 145
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=56.51 E-value=24 Score=24.75 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=30.8
Q ss_pred eEEEEecCCCCCcccccCCCCcccceeecCC--------------CCHHHHHHHHHhhcCC
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGHMDVHIHMSY--------------CTPCGFRMPASNYLQI 67 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~--------------p~~~~~~~l~~~~l~~ 67 (90)
-+||.+|+.|+.+++..+++|++ .|.++. .|.++.+.....|.+.
T Consensus 89 DiVIsat~~~~ii~~~~~~~~~v--iIDla~prdvd~~~~~~~G~~d~~~~~~~~~~~~~~ 147 (168)
T cd01080 89 DIVIVAVGKPGLVKGDMVKPGAV--VIDVGINRVPDKSGGKLVGDVDFESAKEKASAITPV 147 (168)
T ss_pred CEEEEcCCCCceecHHHccCCeE--EEEccCCCcccccCCCeeCCcCHHHHHhhccCcCCC
Confidence 48888999988999999998873 333333 4455566666666554
No 146
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=56.30 E-value=24 Score=27.25 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
+.||..|.- .+ ++.++|++|++++.|-|.+.= |. ..|.|..|+.+...+.+..
T Consensus 131 NaLLKtLEE--Pp--~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 131 NALLKTLEE--PS--PGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred HHHHHHhhC--CC--CCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 345555542 22 567889999999999999873 33 4688888888776665554
No 147
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=56.16 E-value=9.7 Score=27.43 Aligned_cols=74 Identities=9% Similarity=0.086 Sum_probs=39.5
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcc---cccCCCCcc--cceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHHH
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLD---LTLLRPGHM--DVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEML 79 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lD---pAllRpGR~--D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l 79 (90)
.|...++.+..+ ++.+|+.+-..|..+. |.|.= || -..+++..|+.+.+.+++++......-++-+++.++
T Consensus 118 ~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~ 193 (219)
T PF00308_consen 118 ELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEY 193 (219)
T ss_dssp HHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHH
T ss_pred HHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 444555555444 4455555545677664 33321 33 237888999999999999887765555566666665
Q ss_pred hhc
Q 038334 80 LEL 82 (90)
Q Consensus 80 l~~ 82 (90)
+..
T Consensus 194 l~~ 196 (219)
T PF00308_consen 194 LAR 196 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 148
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.06 E-value=28 Score=28.83 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..++.. . +..++|++|+.++.+.+.+.. |. ..++|..++.+.....+...+
T Consensus 138 naLLk~LEep--p--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 138 NALLKTLEEP--P--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred HHHHHHHhcC--C--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHH
Confidence 4566665543 2 457888888888888888764 33 357888888888776666554
No 149
>PHA02244 ATPase-like protein
Probab=55.62 E-value=16 Score=29.38 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=26.5
Q ss_pred CceEEEEecCCC-----------CCcccccCCCCcccceeecCCCCH
Q 038334 19 DERIMIVKTNHK-----------AKLDLTLLRPGHMDVHIHMSYCTP 54 (90)
Q Consensus 19 ~~~ivi~tTN~~-----------e~lDpAllRpGR~D~~I~~~~p~~ 54 (90)
++.-+|+|+|.+ ..|++|++- || ..|+|++|+.
T Consensus 220 ~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 220 EDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred CCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 356788899963 688999997 88 5799999984
No 150
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=54.51 E-value=30 Score=26.83 Aligned_cols=53 Identities=8% Similarity=-0.042 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
+.||..+.- ++ ++.++|++|++++.|-|.++= |. ..+.|..|+.+...+.+..
T Consensus 125 NaLLKtLEE--Pp--~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 125 NALLKTLEE--PR--PNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred HHHHHHhcC--CC--CCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 345555553 23 678999999999999999772 22 4688898888877665554
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=53.40 E-value=37 Score=28.32 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..|.-. + +...+|++||.+..|.|++.- |. .+++|..++.+.....+.+.+.
T Consensus 135 NALLK~LEEp--p--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 135 NALLKTLEEP--P--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred HHHHHHHhhc--C--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHH
Confidence 3455555532 2 457788888889999999885 43 5889999998887766665443
No 152
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=51.92 E-value=17 Score=29.28 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCC-CCC---cccccCCCCcc--cceeecCCCCHHHHHHHHHhhcCC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNH-KAK---LDLTLLRPGHM--DVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~-~e~---lDpAllRpGR~--D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+|...++..... .. -+|+|+|. |+. +++.|.- || ...+.+..|+.+++.+++++.+..
T Consensus 227 ~lf~l~N~~~~~--~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 227 IFFTIFNNFIEN--DK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred HHHHHHHHHHHc--CC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 344444544444 23 45666665 443 3555554 55 367779999999999999887653
No 153
>PRK09862 putative ATP-dependent protease; Provisional
Probab=50.65 E-value=16 Score=30.12 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=26.4
Q ss_pred CceEEEEecCCCC---------------------CcccccCCCCcccceeecCCCCHH
Q 038334 19 DERIMIVKTNHKA---------------------KLDLTLLRPGHMDVHIHMSYCTPC 55 (90)
Q Consensus 19 ~~~ivi~tTN~~e---------------------~lDpAllRpGR~D~~I~~~~p~~~ 55 (90)
.+..+|+|+|... +|.++++= |||.++.+++++.+
T Consensus 336 a~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 336 ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 3567888998643 45666665 99999999999765
No 154
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.60 E-value=30 Score=28.40 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.||..|.-. + +.+++|++||.+..+.+.++- |. ..++|..++.+.....+++.+
T Consensus 137 naLLk~LEep--p--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 137 NALLKTLEEP--P--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred HHHHHHHhcc--C--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHH
Confidence 3455555532 2 467888888999999888764 44 567788777777665554444
No 155
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=48.38 E-value=26 Score=29.44 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=31.9
Q ss_pred HHHHHHHhc---------CCCCCCCCceEEEEecCCC---CCcccccCCCCcccceeecCCCCHHH
Q 038334 3 LSRMLTFID---------RLWLGYGDERIMIVKTNHK---AKLDLTLLRPGHMDVHIHMSYCTPCG 56 (90)
Q Consensus 3 ls~lL~~lD---------G~~~~~~~~~ivi~tTN~~---e~lDpAllRpGR~D~~I~~~~p~~~~ 56 (90)
++.|+..|+ |..-.....-++|+|-|.. +.|.++++= |||++|.+++++...
T Consensus 110 ~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 110 AARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred HHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 456666663 4433222234444443322 457778886 999999999988664
No 156
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=48.34 E-value=39 Score=30.17 Aligned_cols=44 Identities=16% Similarity=-0.031 Sum_probs=31.2
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
.|--||+||... .+++....|+.+++..++.+...+++..+...
T Consensus 323 ~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 323 SGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred CCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 444556677644 33444467889999999999989999887543
No 157
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=47.53 E-value=14 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCCcccccCCCCcc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
--+||.+|..+..+++..++||-+
T Consensus 72 ADIVvsAtg~~~~i~~~~ikpGa~ 95 (140)
T cd05212 72 ADVVVVGSPKPEKVPTEWIKPGAT 95 (140)
T ss_pred CCEEEEecCCCCccCHHHcCCCCE
Confidence 458889999999999999999984
No 158
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.29 E-value=49 Score=27.62 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
+.||..|.- .+ +..++|++|+.+..+-++++- |. ..++|..++.+.....+...
T Consensus 137 naLLK~LEe--pp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~i 190 (546)
T PRK14957 137 NALLKTLEE--PP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKII 190 (546)
T ss_pred HHHHHHHhc--CC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHH
Confidence 345555553 22 457778877888888888664 44 67999999888876666553
No 159
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.38 E-value=21 Score=27.43 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.5
Q ss_pred ceEEEEecCCCCCcccccCCCCc--ccceeec
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHIHM 49 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I~~ 49 (90)
--++|.++.+|..+.+..++||. +|.-|..
T Consensus 205 ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 205 ADFLFVAIGRPRFVTADMVKPGAVVVDVGINR 236 (286)
T ss_pred CCEEEEecCCCCcCCHHHcCCCCEEEEeeeec
Confidence 35889999999999999999999 4554443
No 160
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=46.09 E-value=10 Score=30.19 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=30.6
Q ss_pred eEEEEecCCCC-------CcccccCCCCcccceeecCCCCHHH-HHHHHHhhcC
Q 038334 21 RIMIVKTNHKA-------KLDLTLLRPGHMDVHIHMSYCTPCG-FRMPASNYLQ 66 (90)
Q Consensus 21 ~ivi~tTN~~e-------~lDpAllRpGR~D~~I~~~~p~~~~-~~~l~~~~l~ 66 (90)
.+||++||..| ....|+++ |+. .|+++||..-. =.++.++-++
T Consensus 278 ~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 278 GLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred eEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhc
Confidence 47888999763 66789998 998 89999886533 3445555454
No 161
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=45.85 E-value=70 Score=24.47 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=38.7
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.||..|.-. +..++|+.|++++.|-|.+.- |. ..++|..++.+...+.+....
T Consensus 143 aLLK~LEEP-----p~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 143 ALLKTLEEP-----GNGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHHhCC-----CCCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 355555432 234678888999999999884 43 579999999999888887653
No 162
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.79 E-value=22 Score=27.37 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=32.4
Q ss_pred ceEEEEecCCCCCcccccCCCCc--ccceee------cCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHIH------MSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I~------~~~p~~~~~~~l~~~~l~ 66 (90)
--++|.|+.+|+.+.+..++||. +|.=|. +|-.|++..+..++.+.+
T Consensus 208 ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~~gkl~GDvd~~~~~~~a~~iTP 262 (287)
T PRK14176 208 ADILVVATGVKHLIKADMVKEGAVIFDVGITKEEDKVYGDVDFENVIKKASLITP 262 (287)
T ss_pred CCEEEEccCCccccCHHHcCCCcEEEEecccccCCCccCCcCHHHHHhhceEcCC
Confidence 45889999999999999999999 455443 233455555555444444
No 163
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.52 E-value=20 Score=27.61 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=32.1
Q ss_pred ceEEEEecCCCCCcccccCCCCc--ccceee---cCCCCHHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHIH---MSYCTPCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I~---~~~p~~~~~~~l~~~~l 65 (90)
.-|+|.++.+|+.+.+..++||. +|.=|. +|--|++..+..++.+.
T Consensus 203 ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~~~~GDVd~~~v~~~a~~iT 253 (284)
T PRK14177 203 ADIIVGAVGKPEFIKADWISEGAVLLDAGYNPGNVGDIEISKAKDKSSFYT 253 (284)
T ss_pred CCEEEEeCCCcCccCHHHcCCCCEEEEecCcccccCCcCHHHHhhhccEec
Confidence 45889999999999999999999 444443 34455555554444443
No 164
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.93 E-value=29 Score=27.15 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=31.8
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+..++|++|++++.+-+++.. |. ..++|..++.+.....+...+
T Consensus 156 ~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 156 PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHH
Confidence 456777888888888888775 33 368888888888776666544
No 165
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=44.88 E-value=29 Score=30.35 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=23.8
Q ss_pred cccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 33 LDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 33 lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.|+++ +|+| .|.|...+.+..++++...+.
T Consensus 751 f~PEfl--nRi~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 751 FKPAFL--GRMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred ccHHHh--ccee-EEEeCCCCHHHHHHHHHHHHH
Confidence 445555 4898 789999999998888877654
No 166
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.07 E-value=24 Score=27.15 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=24.6
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYC 52 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p 52 (90)
--+||.|+..|+.+.+..++||. ..|.++.+
T Consensus 202 ADIVIsAvg~p~~i~~~~vk~ga--vVIDvGi~ 232 (286)
T PRK14175 202 ADVIVSAVGKPGLVTKDVVKEGA--VIIDVGNT 232 (286)
T ss_pred CCEEEECCCCCcccCHHHcCCCc--EEEEcCCC
Confidence 35889999999999999999997 35555543
No 167
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=43.88 E-value=7.8 Score=20.27 Aligned_cols=8 Identities=50% Similarity=0.929 Sum_probs=6.2
Q ss_pred ccCCCCcc
Q 038334 36 TLLRPGHM 43 (90)
Q Consensus 36 AllRpGR~ 43 (90)
||+||-||
T Consensus 22 ALlrPErF 29 (29)
T PRK14759 22 ALLRPERF 29 (29)
T ss_pred HHhCcccC
Confidence 67888776
No 168
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=43.85 E-value=28 Score=27.88 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=20.9
Q ss_pred CcccceeecCCCCHHHHHHHHHh
Q 038334 41 GHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 41 GR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
||+|..+.|...+.+.+..++..
T Consensus 301 gRld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 301 GRLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred CCCCeeeecCCCCHHHHHHHHHH
Confidence 89999999999999998888863
No 169
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=43.19 E-value=31 Score=26.55 Aligned_cols=51 Identities=6% Similarity=0.015 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHH
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPAS 62 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~ 62 (90)
.+|..+.-. . ++..+|++|++++.+.|++.. |. ..+.|..|+.+...+.+.
T Consensus 132 aLLk~LEep--~--~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 132 SLLKVLEEP--P--PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HHHHHHHhC--c--CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 445554433 2 356788899999999998774 33 578889998887665554
No 170
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.73 E-value=44 Score=28.79 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=32.2
Q ss_pred ceEEEEecC--CCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTN--HKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN--~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.+++|++|+ ....++++++.-+ ..++|..++.+.+..++++++.
T Consensus 137 ~IiLI~aTTenp~~~l~~aL~SR~---~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 137 TITLIGATTENPYFEVNKALVSRS---RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred eEEEEEecCCChHhhhhhHhhccc---cceecCCCCHHHHHHHHHHHHH
Confidence 456666553 3357899998533 3589999999999999988764
No 171
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.55 E-value=27 Score=26.76 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=33.4
Q ss_pred ceEEEEecCCCCCcccccCCCCc--ccceee------cCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHIH------MSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I~------~~~p~~~~~~~l~~~~l~ 66 (90)
--++|.|+.++..+.+..++||. +|.-|. +|--|+++.+..++.+.+
T Consensus 196 ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~gkl~GDvdf~~~~~~a~~iTP 250 (279)
T PRK14178 196 ADILVSAAGKAGFITPDMVKPGATVIDVGINQVNGKLCGDVDFDAVKEIAGAITP 250 (279)
T ss_pred CCEEEECCCcccccCHHHcCCCcEEEEeeccccCCCCcCCccHHHHHhhccCcCC
Confidence 35889999999999999999999 555555 344456666555554444
No 172
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.84 E-value=26 Score=26.93 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=24.7
Q ss_pred ceEEEEecCCCCCcccccCCCCc--ccceeec
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHIHM 49 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I~~ 49 (90)
--++|.++.+|+.+++..++||. +|+-|..
T Consensus 202 ADIVI~avg~~~~v~~~~ik~GavVIDvgin~ 233 (284)
T PRK14179 202 ADILVVAIGRGHFVTKEFVKEGAVVIDVGMNR 233 (284)
T ss_pred CCEEEEecCccccCCHHHccCCcEEEEeccee
Confidence 35889999999999999999998 5555544
No 173
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.45 E-value=78 Score=26.67 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=37.0
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
.||..|.-. + +..++|++|+.+..|-|+|.. |. ..++|..++.+.....+...
T Consensus 140 aLLK~LEep--p--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~i 192 (614)
T PRK14971 140 AFLKTLEEP--P--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYV 192 (614)
T ss_pred HHHHHHhCC--C--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHH
Confidence 455555532 2 457888888888999999875 43 34899988888877666543
No 174
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.40 E-value=30 Score=26.62 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=32.4
Q ss_pred ceEEEEecCCCCCcccccCCCCc--ccceeec-------CCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHIHM-------SYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I~~-------~~p~~~~~~~l~~~~l~ 66 (90)
--++|.|+.+|+.+.+..++||. +|.-|.. |--|++..+..++.+.+
T Consensus 203 ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~~gk~~GDvd~~~~~~~a~~itP 258 (285)
T PRK10792 203 ADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDGKLVGDVEFETAAERASWITP 258 (285)
T ss_pred CCEEEEcCCCcccccHHHcCCCcEEEEcccccccCCCcCCCcCHHHHHhhccCcCC
Confidence 45899999999999999999999 4444332 22445555555555544
No 175
>CHL00095 clpC Clp protease ATP binding subunit
Probab=41.36 E-value=41 Score=29.02 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=22.3
Q ss_pred CcccceeecCCCCHHHHHHHHHhhcC
Q 038334 41 GHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 41 GR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+|+|..|.|...+.+..++++...+.
T Consensus 708 nRid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 708 NRLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 59999999999999998888877654
No 176
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=40.16 E-value=31 Score=27.81 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=23.1
Q ss_pred ccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 34 DLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 34 DpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
-|+++ ||+|..+.|...+.+.+..++..
T Consensus 302 ~PEfl--gRld~Iv~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 302 IPEFI--GRLPVIATLEKLDEEALIAILTK 329 (413)
T ss_pred HHHHh--CCCCeEeecCCCCHHHHHHHHHH
Confidence 35555 89999999999999998888754
No 177
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=39.74 E-value=81 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=35.3
Q ss_pred CceEEEEecCCCCCcccccC-CCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 19 DERIMIVKTNHKAKLDLTLL-RPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAll-RpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
..+++|++|..++++.+.++ |==| ..|..-+.+.....+...+..+
T Consensus 148 ~hV~FIlATTe~~Kip~TIlSRcq~----f~fkri~~~~I~~~L~~i~~~E 194 (515)
T COG2812 148 SHVKFILATTEPQKIPNTILSRCQR----FDFKRLDLEEIAKHLAAILDKE 194 (515)
T ss_pred cCeEEEEecCCcCcCchhhhhcccc----ccccCCCHHHHHHHHHHHHHhc
Confidence 57999999999999999988 5444 4556677777777777776644
No 178
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=38.43 E-value=54 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=16.6
Q ss_pred CCCccHHHHHHHhhccccccc
Q 038334 68 IEHPLFSKIEMLLELKKVIQV 88 (90)
Q Consensus 68 ~~~~l~~~i~~ll~~~~~t~v 88 (90)
..||+...+-..++++++.+|
T Consensus 96 ~~~P~V~avL~~FPgA~I~~V 116 (117)
T PF12362_consen 96 RAHPLVKAVLAAFPGAEIVDV 116 (117)
T ss_pred HhCcHHHHHHHHCCCCEEEee
Confidence 468888888888888887765
No 179
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=38.34 E-value=31 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=17.4
Q ss_pred CceEEEEecCCCCCcccccCCCCcc
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
.||+++-. +..|||+..++||.
T Consensus 75 ~GRFla~~---~gFLDP~~y~~Gr~ 96 (160)
T PF03843_consen 75 QGRFLARV---PGFLDPAIYAPGRL 96 (160)
T ss_pred CCEEEEEe---CCCcCHHHcCCCCE
Confidence 67887554 56799999999993
No 180
>PRK04132 replication factor C small subunit; Provisional
Probab=37.85 E-value=74 Score=28.16 Aligned_cols=43 Identities=7% Similarity=-0.043 Sum_probs=33.3
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
....+|++||.++.+-|++.- |. ..+.|..|+.++....+...
T Consensus 659 ~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 659 SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 467889999999999998874 44 67899999887766655543
No 181
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.43 E-value=83 Score=26.68 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=32.5
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+..++|++|++++.|-+++..-| ..++|..++.+.....+...+
T Consensus 156 ~~tv~IL~t~~~~kLl~TI~SRc---~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 156 PHAIFIFATTELHKIPATIASRC---QRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred CCeEEEEEeCChhhhhHHHHhhc---eEEecCCCCHHHHHHHHHHHH
Confidence 35677788888899988887533 478999998888776665543
No 182
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.00 E-value=35 Score=26.24 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCCcccccCCCCc--ccceee
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGH--MDVHIH 48 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR--~D~~I~ 48 (90)
..-++|.|+.+|+.+.+..++||. +|.=|.
T Consensus 201 ~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin 232 (282)
T PRK14180 201 KADILIVAVGKPNFITADMVKEGAVVIDVGIN 232 (282)
T ss_pred hcCEEEEccCCcCcCCHHHcCCCcEEEEeccc
Confidence 346899999999999999999999 444443
No 183
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=36.81 E-value=78 Score=24.22 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=36.4
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
.||..+.- ++ +..++|+.|+.++.|-|.+.--|+ .++|..++.+.....+..
T Consensus 109 aLLK~LEE--Pp--~~t~~il~~~~~~kll~TI~SRc~---~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 109 ALLKTIEE--PP--KDTYFLLTTKNINKVLPTIVSRCQ---VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHHHHhhC--CC--CCeEEEEEeCChHhChHHHHhCeE---EEECCCCCHHHHHHHHHH
Confidence 45555553 23 568888888899999998774333 588998888777655443
No 184
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.70 E-value=33 Score=26.33 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCCcccccCCCCcc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
--|+|.++.+|+.+++..++||.+
T Consensus 202 ADIvIsAvGkp~~i~~~~ik~gav 225 (278)
T PRK14172 202 ADILVVAIGRPKFIDEEYVKEGAI 225 (278)
T ss_pred CCEEEEcCCCcCccCHHHcCCCcE
Confidence 458999999999999999999994
No 185
>PF03397 Rhabdo_matrix: Rhabdovirus matrix protein; InterPro: IPR005060 The matrix (M) proteins of Rabies virus (RV) plays a key role in both assembly and budding of progeny virions. A PPPY motif (PY motif or late-budding domain) is conserved in the M proteins. These PY motifs are important for virus budding and for mediating interactions with specific cellular proteins containing WW domains.
Probab=34.91 E-value=32 Score=24.56 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCCCcccceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHHHhhcc
Q 038334 38 LRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEMLLELK 83 (90)
Q Consensus 38 lRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ll~~~ 83 (90)
.||+-++-+|++. ..+++..+|-+.||.|..+-.+++..
T Consensus 33 ~~P~~l~eKi~~a-------M~LA~AIlggd~HPaF~~l~ylFq~~ 71 (168)
T PF03397_consen 33 MRPTNLTEKIYYA-------MKLAAAILGGDLHPAFNPLVYLFQSA 71 (168)
T ss_pred CCCCchhhHHHHH-------HHHHHHHHCCCCCcchhhHHHHHHHh
Confidence 4778888888774 67778889989999999999888763
No 186
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=33.49 E-value=86 Score=25.63 Aligned_cols=61 Identities=20% Similarity=0.094 Sum_probs=40.7
Q ss_pred ceEEEEecCCCCCcccccCC-----------CCcccceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHHHh
Q 038334 20 ERIMIVKTNHKAKLDLTLLR-----------PGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEMLL 80 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllR-----------pGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ll 80 (90)
.++|.-.||--+..+.-+-| -||.||.+-+--|....-.++...|+.+.....++-|..|+
T Consensus 142 DviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDyelisAl~ 213 (429)
T COG1029 142 DVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDYELISALR 213 (429)
T ss_pred cEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcHHHHHHHH
Confidence 45555599976665544333 47999988776666666667778888777666665555554
No 187
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.45 E-value=42 Score=25.91 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=24.1
Q ss_pred ceEEEEecCCCCCcccccCCCCc--ccceeec
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHIHM 49 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I~~ 49 (90)
--++|.++.+|..+++..++||. +|.-|..
T Consensus 207 ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 207 ADILIAAIGKARFITADMVKPGAVVIDVGINR 238 (295)
T ss_pred CCEEEEecCccCccCHHHcCCCCEEEEeeccc
Confidence 35889999999999999999999 4444443
No 188
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=32.96 E-value=15 Score=18.48 Aligned_cols=8 Identities=50% Similarity=0.929 Sum_probs=5.6
Q ss_pred ccCCCCcc
Q 038334 36 TLLRPGHM 43 (90)
Q Consensus 36 AllRpGR~ 43 (90)
||+||-||
T Consensus 18 aLl~PErF 25 (25)
T PF09604_consen 18 ALLRPERF 25 (25)
T ss_pred HHhCcccC
Confidence 67777775
No 189
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.73 E-value=40 Score=26.07 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCCcccccCCCCcc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
--|+|.|+.+|..+++..++||.+
T Consensus 209 ADIvVsAvGkp~~i~~~~ik~gav 232 (297)
T PRK14168 209 ADILIVAAGVPNLVKPEWIKPGAT 232 (297)
T ss_pred CCEEEEecCCcCccCHHHcCCCCE
Confidence 458899999999999999999983
No 190
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair]
Probab=31.28 E-value=2.2e+02 Score=21.80 Aligned_cols=62 Identities=19% Similarity=0.129 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCccHHHHHHHhhcc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEMLLELK 83 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ll~~~ 83 (90)
-+.|+.+-|+..=. -.-++|++-+|+|-+.+ +--+.+.=++.|+|...-|.-.+++.+.+..
T Consensus 164 ~~~LT~VKGIg~Wt-v~MflIfsL~R~DVmp~-----------------dDlgir~g~k~l~gl~~~p~~~evekl~e~~ 225 (254)
T KOG1918|consen 164 IERLTNVKGIGRWT-VEMFLIFSLHRPDVMPA-----------------DDLGIRNGVKKLLGLKPLPLPKEVEKLCEKC 225 (254)
T ss_pred HHHHHhccCcccee-eeeeeeeccCCCcccCc-----------------hhhhHHHHHHHHhCCCCCCchHHHHHHhhhc
Confidence 35677888873310 35788899888877654 3445566677788887777777777665543
No 191
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=31.19 E-value=1.2e+02 Score=23.18 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHH
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPAS 62 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~ 62 (90)
+.||..+.- +. ++.++|+.|+.++.|-|.+.= |. .+|+|.. +.+...+.+.
T Consensus 122 NaLLKtLEE--Pp--~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 122 NSLLKVIEE--PQ--SEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred HHHHHHhcC--CC--CCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 456666653 22 568899999999999999773 33 5677765 4554444443
No 192
>COG4737 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.94 E-value=38 Score=23.20 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=29.4
Q ss_pred eecCCCCHHHHHHHHHhhcCCCCCccHHHHHHHhhccccccc
Q 038334 47 IHMSYCTPCGFRMPASNYLQIIEHPLFSKIEMLLELKKVIQV 88 (90)
Q Consensus 47 I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ll~~~~~t~v 88 (90)
..+..+....+++|+++|+.... .++..|++....+||
T Consensus 82 ~nI~~~Ela~frklA~~~l~~t~----aql~~Lie~g~l~EV 119 (123)
T COG4737 82 ANISDMELAAFRKLAKHYLALTR----AQLAALIETGELTEV 119 (123)
T ss_pred cccccHHHHHHHHHHHHHHHHhH----HHHHHHHccCcEEEe
Confidence 34566677789999999987643 678889988888766
No 193
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.59 E-value=37 Score=26.10 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCCcccccCCCCcc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
--|+|.++.+|..+++..++||.+
T Consensus 202 ADIvI~AvG~p~~i~~~~ik~gav 225 (284)
T PRK14190 202 ADILIVAVGKPKLITADMVKEGAV 225 (284)
T ss_pred CCEEEEecCCCCcCCHHHcCCCCE
Confidence 358899999999999999999994
No 194
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=29.35 E-value=98 Score=25.35 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=33.8
Q ss_pred cCCCCCCCCceEEEEecC-CCCCcccccCCCCcccceeecCCCCH-HHHHHHHHh
Q 038334 11 DRLWLGYGDERIMIVKTN-HKAKLDLTLLRPGHMDVHIHMSYCTP-CGFRMPASN 63 (90)
Q Consensus 11 DG~~~~~~~~~ivi~tTN-~~e~lDpAllRpGR~D~~I~~~~p~~-~~~~~l~~~ 63 (90)
+|+.-...-..++|+|+| .-..|=|-|+= ||...|.+.+|.. +.+.++..+
T Consensus 178 eGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 178 EGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred CceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHH
Confidence 566444445678888888 33456666664 9999999987755 445555544
No 195
>COG1485 Predicted ATPase [General function prediction only]
Probab=29.32 E-value=34 Score=27.48 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=18.3
Q ss_pred CceEEEEecC-CCCCcccccCCCCcc
Q 038334 19 DERIMIVKTN-HKAKLDLTLLRPGHM 43 (90)
Q Consensus 19 ~~~ivi~tTN-~~e~lDpAllRpGR~ 43 (90)
.|+++|+|+| .|+.|=+.=+.-+||
T Consensus 160 ~GV~lvaTSN~~P~~LY~dGlqR~~F 185 (367)
T COG1485 160 RGVVLVATSNTAPDNLYKDGLQRERF 185 (367)
T ss_pred CCcEEEEeCCCChHHhcccchhHHhh
Confidence 5899999999 578877665544454
No 196
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.17 E-value=39 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCCcccccCCCCc--cccee
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHI 47 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I 47 (90)
--++|.++++|+.+++..++||. +|.-|
T Consensus 201 ADIvV~AvG~p~~i~~~~vk~GavVIDvGi 230 (285)
T PRK14191 201 ADIVCVGVGKPDLIKASMVKKGAVVVDIGI 230 (285)
T ss_pred CCEEEEecCCCCcCCHHHcCCCcEEEEeec
Confidence 35889999999999999999999 44444
No 197
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=28.68 E-value=53 Score=19.90 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=26.7
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCH
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTP 54 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~ 54 (90)
.+.+....+....+|.+.+.-|+|..+..++.|..
T Consensus 27 ~vyL~~~~~~~~~~ds~~v~nG~F~f~~~~~~p~~ 61 (106)
T PF14289_consen 27 KVYLYYYDNGKVVIDSVVVKNGKFSFKGPLDEPGF 61 (106)
T ss_pred EEEEEEeCCCCEEEEEEEEeCCEEEEEEeCCCCEE
Confidence 34444455555899999999999999999988764
No 198
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=27.63 E-value=51 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=22.9
Q ss_pred ceEEEEecCCC--CCcccccCCCCccc---ceeecC
Q 038334 20 ERIMIVKTNHK--AKLDLTLLRPGHMD---VHIHMS 50 (90)
Q Consensus 20 ~~ivi~tTN~~--e~lDpAllRpGR~D---~~I~~~ 50 (90)
++.+|+++|.. ..+||.|+. ||+ ++++|.
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~ 301 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMK 301 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEee
Confidence 46788888864 679999998 999 777774
No 199
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=27.30 E-value=85 Score=30.98 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=37.7
Q ss_pred ceEEEEecCCCCCcccccCCCCcccc---------eeecCCCCHHHHHHHHHhhcCCCCCccHHHHHHHhhc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDV---------HIHMSYCTPCGFRMPASNYLQIIEHPLFSKIEMLLEL 82 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~---------~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ll~~ 82 (90)
+.++.+++|-+.. |||+++ .|+++||.-.+..++...|+-. ...++++...+.++
T Consensus 1611 ~i~l~Gacnp~td-------~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~-s~l~~~ef~~~se~ 1674 (3164)
T COG5245 1611 GIILYGACNPGTD-------EGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMG-SYLCFDEFNRLSEE 1674 (3164)
T ss_pred ceEEEccCCCCCC-------cccCccHHHHhcCceEEEecCcchhhHHHHHHHHHHH-HHHhhHHHHHHHHH
Confidence 5777889997764 344443 5788999999999998877652 33445565555443
No 200
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=27.03 E-value=1.8e+02 Score=22.41 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.6
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.||..+.- +. .+.++|+.|+.++.|-|.++- |. .++++..|......+....++.
T Consensus 108 ALLKtLEE--PP--~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 108 SCLKILED--AP--KNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred HHHHhhcC--CC--CCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHHHHhcc
Confidence 45555542 23 568888899999999998873 32 4688888888777777666543
No 201
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.69 E-value=63 Score=24.85 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCCcccccCCCCc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH 42 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR 42 (90)
--|+|.++.+|..+.+..++||.
T Consensus 201 ADIvI~AvG~~~~i~~~~vk~Ga 223 (284)
T PRK14170 201 ADILVVATGLAKFVKKDYIKPGA 223 (284)
T ss_pred CCEEEEecCCcCccCHHHcCCCC
Confidence 35899999999999999999998
No 202
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=26.21 E-value=33 Score=28.33 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=14.7
Q ss_pred CceEEEEecCC-CCCcccccC
Q 038334 19 DERIMIVKTNH-KAKLDLTLL 38 (90)
Q Consensus 19 ~~~ivi~tTN~-~e~lDpAll 38 (90)
.|+|+|+|+|| |+.|-..-+
T Consensus 223 ~GvVlvATSNR~P~dLYknGl 243 (467)
T KOG2383|consen 223 NGVVLVATSNRAPEDLYKNGL 243 (467)
T ss_pred CCeEEEEeCCCChHHHhhcch
Confidence 58999999995 776655433
No 203
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=26.15 E-value=97 Score=23.71 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=24.9
Q ss_pred eEEEEecCCCC-------------CcccccCCCCcccceeec-CCCCHHHHHHHHHhhcC
Q 038334 21 RIMIVKTNHKA-------------KLDLTLLRPGHMDVHIHM-SYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 21 ~ivi~tTN~~e-------------~lDpAllRpGR~D~~I~~-~~p~~~~~~~l~~~~l~ 66 (90)
--|++|+|-.. .+++.|+- |||..+.+ +.++.+.=+.+..+.+.
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 45677888554 47788886 99998776 77876665555554443
No 204
>PRK14700 recombination factor protein RarA; Provisional
Probab=25.40 E-value=1.3e+02 Score=23.53 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=33.4
Q ss_pred CceEEEEe-cCCC-CCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVK-TNHK-AKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~t-TN~~-e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+-+++|+| |-+| -.+.|||+- |. +.+.+...+.+....++++-+.
T Consensus 7 G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~ 53 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALS 53 (300)
T ss_pred CcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHH
Confidence 34677774 4466 678999995 44 5688899999998888877654
No 205
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.39 E-value=53 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.7
Q ss_pred ceEEEEecCCCCCcccccCCCCcc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
--++|.++.+|+.+.+..++||.+
T Consensus 201 ADIvV~AvGkp~~i~~~~vk~gav 224 (281)
T PRK14183 201 ADIVIVGVGKPNLITEDMVKEGAI 224 (281)
T ss_pred CCEEEEecCcccccCHHHcCCCcE
Confidence 458899999999999999999983
No 206
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.28 E-value=52 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=23.9
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~ 50 (90)
--++|.++.++..+++..++||.+ .|.+|
T Consensus 202 ADIVV~avG~~~~i~~~~ik~gav--VIDVG 230 (285)
T PRK14189 202 ADIVVAAVGKRNVLTADMVKPGAT--VIDVG 230 (285)
T ss_pred CCEEEEcCCCcCccCHHHcCCCCE--EEEcc
Confidence 458999999999999999999983 44444
No 207
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.10 E-value=52 Score=25.26 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCCcccccCCCCcc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
--|+|.|+.+|+.+++..++||.+
T Consensus 201 ADIvIsAvGkp~~i~~~~vk~Gav 224 (282)
T PRK14166 201 ADLIIVAAGCVNLLRSDMVKEGVI 224 (282)
T ss_pred CCEEEEcCCCcCccCHHHcCCCCE
Confidence 458999999999999999999993
No 208
>PF12846 AAA_10: AAA-like domain
Probab=23.97 E-value=49 Score=23.40 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=33.4
Q ss_pred CCceEEEEecCCCCCcc-----cccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 18 GDERIMIVKTNHKAKLD-----LTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 18 ~~~~ivi~tTN~~e~lD-----pAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
+.+..++++|..|..++ ++++- -...+|-+...+.+... +..++|..
T Consensus 251 k~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i~~~~~~~~~~~--l~~~~gl~ 302 (304)
T PF12846_consen 251 KYGVGLILATQSPSDLPKSPIEDAILA--NCNTKIIFRLEDSDDAE--LAELFGLT 302 (304)
T ss_pred hcCCEEEEeeCCHHHHhccchHHHHHH--hCCcEEEecCChHHHHH--HHHHcCcC
Confidence 35778888999998888 66664 56677777777766654 55666764
No 209
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=23.96 E-value=33 Score=25.76 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=13.4
Q ss_pred EEEecCCCCCcccccC
Q 038334 23 MIVKTNHKAKLDLTLL 38 (90)
Q Consensus 23 vi~tTN~~e~lDpAll 38 (90)
+|+++||...+||.++
T Consensus 24 vIl~sNH~S~~Dp~ii 39 (235)
T cd07985 24 VVLLANHQTEADPAVI 39 (235)
T ss_pred EEEEECCcccccHHHH
Confidence 4578899999999776
No 210
>PF14875 PIP49_N: N-term cysteine-rich ER, FAM69
Probab=23.59 E-value=2e+02 Score=20.17 Aligned_cols=21 Identities=14% Similarity=0.168 Sum_probs=17.0
Q ss_pred eeecCCCCHHHHHHHHHhhcC
Q 038334 46 HIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 46 ~I~~~~p~~~~~~~l~~~~l~ 66 (90)
...++.|+.+.++.|+.+++.
T Consensus 120 ~~~~~~Ps~~ef~eMV~~~lk 140 (158)
T PF14875_consen 120 LVLFDKPSMEEFREMVKSFLK 140 (158)
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 346789999999999988754
No 211
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=23.52 E-value=88 Score=21.06 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEE-ecCC---CCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIV-KTNH---KAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~-tTN~---~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
..|.+.++..... .++.+|+ +++. .+..+..----||+.. ++++..+.+..++++...+.
T Consensus 142 ~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~ 205 (234)
T PF01637_consen 142 KSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFK 205 (234)
T ss_dssp HHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHH
Confidence 3455666664444 4444444 4442 1111111112368888 99999999999999988654
No 212
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=23.31 E-value=57 Score=22.21 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLL 38 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAll 38 (90)
+.||..|.-- + ++.++|++|+.++.|-|.++
T Consensus 120 NaLLK~LEep--p--~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 120 NALLKTLEEP--P--ENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp HHHHHHHHST--T--TTEEEEEEES-GGGS-HHHH
T ss_pred HHHHHHhcCC--C--CCEEEEEEECChHHChHHHH
Confidence 4556666532 3 57899999999999888876
No 213
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.70 E-value=57 Score=25.15 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCCcccccCCCCc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH 42 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR 42 (90)
.-|+|.++.+|+.+++..++||.
T Consensus 203 ADIvV~AvGkp~~i~~~~vk~Ga 225 (288)
T PRK14171 203 ADIVVAAIGSPLKLTAEYFNPES 225 (288)
T ss_pred CCEEEEccCCCCccCHHHcCCCC
Confidence 45899999999999999999998
No 214
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=22.49 E-value=2.9e+02 Score=20.43 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccC-CCCccc---------ceeecCCCCHHHHHHHHHh
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLL-RPGHMD---------VHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAll-RpGR~D---------~~I~~~~p~~~~~~~l~~~ 63 (90)
+.||..+.- +. .++++|+.|+.++.+-|.++ |--++. ..+.+...+.++....+..
T Consensus 72 NaLLK~LEE--Pp--~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 72 NALLKILEE--PP--KNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred HHHHHHhcC--CC--CCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 345555543 23 67888899999999999877 322222 2455667777777666665
No 215
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=22.24 E-value=2.2e+02 Score=20.22 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=28.0
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
+.-||+||....... ..+.-+..++++..+.+...+++.++.+..
T Consensus 129 ~~kilvTTR~~~v~~----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 129 GSKILVTTRDRSVAG----SLGGTDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp S-EEEEEESCGGGGT----THHSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred ccccccccccccccc----cccccccccccccccccccccccccccccc
Confidence 445667776543221 112226789999999999999999987653
No 216
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.99 E-value=61 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCCcccccCCCCc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH 42 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR 42 (90)
--|+|.|+.+|+.+++..++||.
T Consensus 200 ADIvI~AvG~p~~i~~~~vk~Ga 222 (282)
T PRK14169 200 ADILVVAVGVPHFIGADAVKPGA 222 (282)
T ss_pred CCEEEEccCCcCccCHHHcCCCc
Confidence 35899999999999999999999
No 217
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.89 E-value=64 Score=24.50 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCCcccccCCCCc--ccceee
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGH--MDVHIH 48 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR--~D~~I~ 48 (90)
--++|-||..|..+++..++||. +|.-+.
T Consensus 203 aDIvI~AtG~~~~v~~~~lk~gavViDvg~n 233 (283)
T PRK14192 203 ADIIVGAVGKPELIKKDWIKQGAVVVDAGFH 233 (283)
T ss_pred CCEEEEccCCCCcCCHHHcCCCCEEEEEEEe
Confidence 35888899999999999999998 444443
No 218
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=21.64 E-value=86 Score=17.70 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=22.3
Q ss_pred CCcccceeecCCCCHHHHHHHHHhhc
Q 038334 40 PGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 40 pGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.|+.|+.+.+-.+|.+.+.+++...+
T Consensus 32 tG~~d~~~~v~~~d~~~l~~~i~~~l 57 (74)
T PF01037_consen 32 TGEYDLILKVRARDMEELEEFIREKL 57 (74)
T ss_dssp SSSSSEEEEEEESSHHHHHHHHHHTH
T ss_pred eCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 48999999999999999999876643
No 219
>PLN00106 malate dehydrogenase
Probab=21.42 E-value=1.1e+02 Score=23.66 Aligned_cols=50 Identities=6% Similarity=-0.063 Sum_probs=34.7
Q ss_pred CceEEEEecCCCC----CcccccCCCCcc--cceeecCCCCHHHHHHHHHhhcCCC
Q 038334 19 DERIMIVKTNHKA----KLDLTLLRPGHM--DVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 19 ~~~ivi~tTN~~e----~lDpAllRpGR~--D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
.+.++|+.||.-+ .+--++.+-.-+ ++.|-++..|..-++.++...+++.
T Consensus 127 p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv~ 182 (323)
T PLN00106 127 PNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLD 182 (323)
T ss_pred CCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHHHhCCC
Confidence 5679999999998 332233333333 4467788788888889998888875
No 220
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.26 E-value=64 Score=24.97 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCCcccccCCCCcc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
--|+|.|+.+|..+++..++||.+
T Consensus 205 ADIvIsAvGkp~~i~~~~ik~gai 228 (297)
T PRK14167 205 ADIVVAAAGVPELIDGSMLSEGAT 228 (297)
T ss_pred CCEEEEccCCcCccCHHHcCCCCE
Confidence 458999999999999999999993
No 221
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.26 E-value=64 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCCcccccCCCCcc
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHM 43 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~ 43 (90)
--|+|.++.+|+.+++..++||.+
T Consensus 205 ADIvIsAvGkp~~i~~~~vk~gav 228 (293)
T PRK14185 205 ADIIIAALGQPEFVKADMVKEGAV 228 (293)
T ss_pred CCEEEEccCCcCccCHHHcCCCCE
Confidence 458999999999999999999993
No 222
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=21.10 E-value=2.2e+02 Score=23.42 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=35.1
Q ss_pred eEEEEecC--CCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 21 RIMIVKTN--HKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 21 ~ivi~tTN--~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
.||+.|+| .-..|..| -|.|.=+.|.++-++.+..+..+..+|+..
T Consensus 185 HVIFlT~dv~~~k~Lska--LPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 185 HVIFLTDDVSYSKPLSKA--LPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEEEECCCCchhhhHHHh--CCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 45555555 34556666 477888899999999999999999998753
No 223
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=20.82 E-value=1.6e+02 Score=23.98 Aligned_cols=29 Identities=10% Similarity=-0.121 Sum_probs=14.7
Q ss_pred eecCCCCHHHHHHHHHhhcCCCCCccHHH
Q 038334 47 IHMSYCTPCGFRMPASNYLQIIEHPLFSK 75 (90)
Q Consensus 47 I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 75 (90)
|...+-+.+..+++++.-...++-.+-++
T Consensus 353 I~t~py~~~d~~~IL~iRc~EEdv~m~~~ 381 (454)
T KOG2680|consen 353 ISTQPYTEEDIKKILRIRCQEEDVEMNPD 381 (454)
T ss_pred eecccCcHHHHHHHHHhhhhhhccccCHH
Confidence 34434445666777766554444333333
No 224
>PF05729 NACHT: NACHT domain
Probab=20.80 E-value=2.3e+02 Score=17.86 Aligned_cols=23 Identities=4% Similarity=0.044 Sum_probs=20.1
Q ss_pred ceeecCCCCHHHHHHHHHhhcCC
Q 038334 45 VHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 45 ~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
..+++...+.++.++++++|+..
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhhc
Confidence 57888999999999999999863
No 225
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.62 E-value=69 Score=24.62 Aligned_cols=29 Identities=10% Similarity=0.329 Sum_probs=23.9
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMS 50 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~ 50 (90)
--++|.++.+|+.+.+..++||.+ .|.+|
T Consensus 204 ADIvV~AvGkp~~i~~~~ik~Gav--VIDvG 232 (284)
T PRK14193 204 ADIIVAAAGVAHLVTADMVKPGAA--VLDVG 232 (284)
T ss_pred CCEEEEecCCcCccCHHHcCCCCE--EEEcc
Confidence 458999999999999999999983 44444
No 226
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.26 E-value=75 Score=25.93 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=46.0
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccC---CCC-cccceeecC--CCCHHHHHHHHHhhcCCCCCccHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLL---RPG-HMDVHIHMS--YCTPCGFRMPASNYLQIIEHPLFSK 75 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAll---RpG-R~D~~I~~~--~p~~~~~~~l~~~~l~~~~~~l~~~ 75 (90)
++.+||..+.-+.. .-.|=++|-||..++..|+ +-+ ++=.++|++ .-+-.-++.|-+.|-..+.-....+
T Consensus 213 ~l~~Ll~~l~~I~G----~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k 288 (437)
T COG0621 213 NLADLLRELSKIPG----IERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEK 288 (437)
T ss_pred CHHHHHHHHhcCCC----ceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHH
Confidence 46777777665421 1233468888888887666 332 666666665 3445556777776655433344555
Q ss_pred HHHHhhcccc
Q 038334 76 IEMLLELKKV 85 (90)
Q Consensus 76 i~~ll~~~~~ 85 (90)
|.+.+++..+
T Consensus 289 ~R~~~Pd~~i 298 (437)
T COG0621 289 LRAARPDIAI 298 (437)
T ss_pred HHHhCCCceE
Confidence 5555544443
Done!