Query 038334
Match_columns 90
No_of_seqs 112 out of 1164
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.8 5E-20 1.7E-24 143.8 6.6 77 2-80 271-350 (405)
2 4b4t_I 26S protease regulatory 99.8 1E-19 3.5E-24 143.4 6.7 77 2-80 305-384 (437)
3 4b4t_L 26S protease subunit RP 99.8 1.1E-19 3.9E-24 142.6 6.4 75 2-78 304-381 (437)
4 4b4t_M 26S protease regulatory 99.8 2.6E-19 8.9E-24 140.4 8.0 77 2-80 304-383 (434)
5 4b4t_K 26S protease regulatory 99.8 4.4E-19 1.5E-23 138.9 6.6 76 2-79 295-374 (428)
6 4b4t_H 26S protease regulatory 99.8 8.7E-19 3E-23 139.0 6.7 78 2-81 332-412 (467)
7 3cf2_A TER ATPase, transitiona 99.7 5.9E-18 2E-22 140.8 3.2 63 3-67 601-663 (806)
8 3cf2_A TER ATPase, transitiona 99.5 6.7E-15 2.3E-19 122.6 5.8 63 3-67 325-387 (806)
9 2x8a_A Nuclear valosin-contain 99.5 2.6E-14 8.8E-19 104.5 5.8 62 3-66 131-192 (274)
10 3cf0_A Transitional endoplasmi 99.4 5.1E-13 1.7E-17 97.9 6.8 63 3-67 139-201 (301)
11 2ce7_A Cell division protein F 99.4 4.8E-13 1.6E-17 105.7 5.4 64 2-67 138-201 (476)
12 1lv7_A FTSH; alpha/beta domain 99.4 1.8E-12 6.2E-17 91.9 7.3 63 3-67 135-197 (257)
13 1ypw_A Transitional endoplasmi 99.3 2.7E-13 9.3E-18 111.9 0.2 63 3-67 601-663 (806)
14 2qz4_A Paraplegin; AAA+, SPG7, 99.3 6E-12 2E-16 88.3 6.4 63 3-67 130-192 (262)
15 2dhr_A FTSH; AAA+ protein, hex 99.3 6.7E-12 2.3E-16 99.6 6.8 63 2-66 153-215 (499)
16 1ixz_A ATP-dependent metallopr 99.2 1.6E-11 5.3E-16 86.9 7.3 62 3-66 139-200 (254)
17 3h4m_A Proteasome-activating n 99.2 2.1E-11 7.1E-16 87.0 5.9 63 3-67 141-203 (285)
18 3t15_A Ribulose bisphosphate c 99.2 1.3E-11 4.6E-16 90.4 4.7 74 4-80 130-212 (293)
19 1iy2_A ATP-dependent metallopr 99.2 7E-11 2.4E-15 85.0 7.2 62 3-66 163-224 (278)
20 1xwi_A SKD1 protein; VPS4B, AA 99.1 1.9E-10 6.4E-15 85.4 7.7 64 3-69 133-196 (322)
21 2r62_A Cell division protease 99.1 3.8E-11 1.3E-15 85.1 3.2 63 3-66 135-197 (268)
22 3hu3_A Transitional endoplasmi 99.1 2.4E-10 8.2E-15 90.1 6.9 63 3-67 325-387 (489)
23 1g41_A Heat shock protein HSLU 99.0 2.7E-11 9.1E-16 95.3 0.0 50 2-55 131-181 (444)
24 3eie_A Vacuolar protein sortin 99.0 5E-10 1.7E-14 82.4 6.0 64 3-69 138-201 (322)
25 2qp9_X Vacuolar protein sortin 98.9 1.3E-09 4.3E-14 81.9 5.6 64 3-69 171-234 (355)
26 2zan_A Vacuolar protein sortin 98.9 1.6E-09 5.4E-14 83.7 5.9 64 3-69 255-318 (444)
27 3vfd_A Spastin; ATPase, microt 98.7 1.6E-08 5.4E-13 76.1 5.5 64 3-68 235-298 (389)
28 3d8b_A Fidgetin-like protein 1 98.7 2E-08 6.7E-13 75.2 6.0 63 3-67 204-266 (357)
29 1ypw_A Transitional endoplasmi 98.6 5.9E-08 2E-12 80.2 7.5 62 3-66 325-386 (806)
30 3b9p_A CG5977-PA, isoform A; A 98.6 3.7E-08 1.3E-12 70.6 4.6 62 4-67 142-204 (297)
31 2c9o_A RUVB-like 1; hexameric 98.3 2E-07 6.7E-12 71.9 1.9 50 5-54 175-226 (456)
32 3m6a_A ATP-dependent protease 97.4 6.4E-05 2.2E-09 59.5 3.1 44 19-65 223-266 (543)
33 3pfi_A Holliday junction ATP-d 97.4 0.00011 3.8E-09 53.2 3.4 46 20-67 154-199 (338)
34 3syl_A Protein CBBX; photosynt 97.4 5.2E-05 1.8E-09 54.1 1.5 59 4-68 157-220 (309)
35 1hqc_A RUVB; extended AAA-ATPa 97.2 0.0007 2.4E-08 48.3 6.3 45 20-66 138-182 (324)
36 1d2n_A N-ethylmaleimide-sensit 97.0 0.00048 1.7E-08 48.7 3.8 58 5-64 153-211 (272)
37 1ofh_A ATP-dependent HSL prote 97.0 0.00053 1.8E-08 48.4 3.8 57 3-63 145-213 (310)
38 2r44_A Uncharacterized protein 97.0 0.00085 2.9E-08 48.6 4.7 47 19-67 149-200 (331)
39 1svm_A Large T antigen; AAA+ f 96.7 0.00023 7.9E-09 54.5 -0.1 40 4-51 245-284 (377)
40 2chg_A Replication factor C sm 96.7 0.0017 5.8E-08 42.7 4.1 55 5-66 121-175 (226)
41 4fcw_A Chaperone protein CLPB; 96.7 0.00081 2.8E-08 47.7 2.5 45 20-66 160-230 (311)
42 3pxg_A Negative regulator of g 96.6 0.0018 6.1E-08 50.1 4.4 46 19-67 290-340 (468)
43 1g8p_A Magnesium-chelatase 38 96.6 0.0023 7.9E-08 46.0 4.4 43 20-64 187-231 (350)
44 3f9v_A Minichromosome maintena 96.6 0.0024 8.3E-08 51.1 4.9 46 19-67 433-492 (595)
45 3pxi_A Negative regulator of g 96.6 0.002 7E-08 52.2 4.4 45 19-66 290-339 (758)
46 1njg_A DNA polymerase III subu 96.5 0.0045 1.5E-07 40.8 5.2 56 4-66 144-199 (250)
47 2v1u_A Cell division control p 96.3 0.0072 2.5E-07 43.4 5.5 46 19-66 166-215 (387)
48 3pxi_A Negative regulator of g 96.2 0.0052 1.8E-07 49.8 4.9 45 20-66 620-676 (758)
49 2qby_B CDC6 homolog 3, cell di 96.1 0.0083 2.8E-07 43.5 5.1 45 19-65 163-210 (384)
50 1jbk_A CLPB protein; beta barr 96.0 0.00063 2.2E-08 43.8 -1.0 40 19-61 150-194 (195)
51 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0067 2.3E-07 48.9 4.0 45 20-66 598-667 (758)
52 3uk6_A RUVB-like 2; hexameric 95.8 0.011 3.7E-07 42.9 4.5 36 29-67 239-274 (368)
53 3u61_B DNA polymerase accessor 95.7 0.0054 1.8E-07 44.0 2.5 40 19-61 135-174 (324)
54 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.011 3.6E-07 46.8 3.9 45 20-66 149-197 (500)
55 1r6b_X CLPA protein; AAA+, N-t 95.4 0.013 4.6E-07 47.1 4.2 54 7-65 304-362 (758)
56 1l8q_A Chromosomal replication 95.4 0.0069 2.4E-07 43.7 2.1 57 5-66 119-180 (324)
57 2chq_A Replication factor C sm 95.1 0.046 1.6E-06 38.3 5.8 45 19-66 131-175 (319)
58 1sxj_D Activator 1 41 kDa subu 95.1 0.025 8.5E-07 40.5 4.4 55 5-66 152-206 (353)
59 4akg_A Glutathione S-transfera 95.0 0.012 4.2E-07 54.6 3.1 44 20-66 1384-1432(2695)
60 2qby_A CDC6 homolog 1, cell di 94.8 0.038 1.3E-06 39.5 4.6 58 4-66 150-211 (386)
61 3hws_A ATP-dependent CLP prote 94.6 0.11 3.9E-06 38.0 7.0 29 33-63 239-267 (363)
62 1iqp_A RFCS; clamp loader, ext 94.6 0.038 1.3E-06 38.8 4.3 55 5-66 129-183 (327)
63 1qvr_A CLPB protein; coiled co 94.4 0.016 5.6E-07 47.7 2.2 44 19-65 298-345 (854)
64 1jr3_A DNA polymerase III subu 94.2 0.06 2.1E-06 38.7 4.6 55 4-65 137-191 (373)
65 1a5t_A Delta prime, HOLB; zinc 94.2 0.078 2.7E-06 38.7 5.2 56 4-66 126-181 (334)
66 2p65_A Hypothetical protein PF 94.0 0.0024 8.3E-08 41.2 -2.8 32 19-53 151-187 (187)
67 2z4s_A Chromosomal replication 94.0 0.015 5.1E-07 44.6 1.1 56 5-65 215-276 (440)
68 3bos_A Putative DNA replicatio 94.0 0.014 4.8E-07 39.1 0.8 58 5-66 125-188 (242)
69 1sxj_E Activator 1 40 kDa subu 93.9 0.061 2.1E-06 38.7 4.2 54 5-65 153-206 (354)
70 1sxj_B Activator 1 37 kDa subu 93.7 0.058 2E-06 37.8 3.7 44 19-65 136-179 (323)
71 1qvr_A CLPB protein; coiled co 93.2 0.081 2.8E-06 43.6 4.2 45 20-66 701-771 (854)
72 1in4_A RUVB, holliday junction 92.7 0.11 3.7E-06 38.0 3.8 43 21-65 151-193 (334)
73 1um8_A ATP-dependent CLP prote 92.1 0.2 7E-06 36.7 4.8 22 41-62 262-283 (376)
74 1fnn_A CDC6P, cell division co 90.7 0.12 4E-06 37.2 2.2 45 20-66 159-207 (389)
75 1g41_A Heat shock protein HSLU 89.6 0.26 8.8E-06 38.5 3.5 56 5-62 281-346 (444)
76 1sxj_C Activator 1 40 kDa subu 87.9 0.94 3.2E-05 32.7 5.3 44 19-65 139-182 (340)
77 3pvs_A Replication-associated 87.6 0.44 1.5E-05 36.7 3.5 45 20-67 134-180 (447)
78 2gno_A DNA polymerase III, gam 86.6 0.37 1.3E-05 35.3 2.4 54 5-67 101-154 (305)
79 3te6_A Regulatory protein SIR3 85.0 0.88 3E-05 33.9 3.8 46 19-66 162-212 (318)
80 2c9o_A RUVB-like 1; hexameric 81.6 1.9 6.4E-05 32.8 4.5 33 30-65 347-379 (456)
81 2r2a_A Uncharacterized protein 77.4 1.1 3.6E-05 31.0 1.8 35 19-55 122-156 (199)
82 1w5s_A Origin recognition comp 74.4 1.4 4.8E-05 31.8 1.9 45 19-65 178-228 (412)
83 3kw6_A 26S protease regulatory 74.2 2 6.8E-05 24.9 2.2 30 50-79 1-33 (78)
84 3vkg_A Dynein heavy chain, cyt 74.2 3 0.0001 39.9 4.3 43 20-65 1422-1469(3245)
85 1sxj_A Activator 1 95 kDa subu 72.3 6.3 0.00022 30.3 5.2 41 21-65 182-222 (516)
86 2bjv_A PSP operon transcriptio 70.7 2.1 7.3E-05 29.4 2.0 43 20-64 141-193 (265)
87 2krk_A 26S protease regulatory 57.1 5 0.00017 24.0 1.6 32 48-79 7-41 (86)
88 1ojl_A Transcriptional regulat 53.6 6.6 0.00022 28.2 2.0 11 20-30 137-147 (304)
89 2vhj_A Ntpase P4, P4; non- hyd 49.8 3.4 0.00012 31.2 -0.0 32 3-37 211-242 (331)
90 3k1j_A LON protease, ATP-depen 48.7 3.2 0.00011 32.7 -0.3 29 20-50 252-285 (604)
91 3f8t_A Predicted ATPase involv 37.3 14 0.00049 29.5 1.8 36 19-56 338-385 (506)
92 1b0a_A Protein (fold bifunctio 28.8 44 0.0015 24.6 3.1 44 21-64 204-256 (288)
93 3h43_A Proteasome-activating n 23.2 53 0.0018 19.7 2.2 24 19-42 30-60 (85)
94 3lmb_A Uncharacterized protein 22.6 76 0.0026 21.1 3.2 29 36-64 94-122 (165)
95 4a5o_A Bifunctional protein fo 22.5 66 0.0023 23.6 3.1 22 21-42 206-227 (286)
96 2wg5_A General control protein 21.6 62 0.0021 20.2 2.4 24 19-42 49-79 (109)
97 1edz_A 5,10-methylenetetrahydr 21.4 55 0.0019 24.3 2.4 30 21-52 247-277 (320)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5e-20 Score=143.82 Aligned_cols=77 Identities=21% Similarity=0.197 Sum_probs=66.5
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC---CCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII---EHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~ 78 (90)
++++||++|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|++|++.|++.. ....+.++.+
T Consensus 271 ~l~~lL~~lDg~~~~--~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~ 348 (405)
T 4b4t_J 271 TMLELLNQLDGFETS--KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE 348 (405)
T ss_dssp HHHHHHHHHHTTTCC--CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHH
T ss_pred HHHHHHHhhhccCCC--CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 478999999999988 78999999999999999999999999999999999999999999998643 2234555555
Q ss_pred Hh
Q 038334 79 LL 80 (90)
Q Consensus 79 ll 80 (90)
..
T Consensus 349 ~t 350 (405)
T 4b4t_J 349 KM 350 (405)
T ss_dssp HC
T ss_pred HC
Confidence 43
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1e-19 Score=143.39 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=66.5
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC---CCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII---EHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~ 78 (90)
++++||++|||+.+. ++++||+|||+|+.|||||+||||||++|+|++||.+++++|++.|++.. ....++++.+
T Consensus 305 ~l~~LL~~lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~ 382 (437)
T 4b4t_I 305 TMLELLNQLDGFDDR--GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVT 382 (437)
T ss_dssp HHHHHHHHHHHCCCS--SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHH
T ss_pred HHHHHHHHhhCcCCC--CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 578999999999888 78999999999999999999999999999999999999999999998642 2334555555
Q ss_pred Hh
Q 038334 79 LL 80 (90)
Q Consensus 79 ll 80 (90)
..
T Consensus 383 ~T 384 (437)
T 4b4t_I 383 TK 384 (437)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-19 Score=142.61 Aligned_cols=75 Identities=24% Similarity=0.219 Sum_probs=64.8
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC---CCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII---EHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~ 78 (90)
++++||++|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|++|++.|++.. ....++++..
T Consensus 304 ~l~~lL~~lDg~~~~--~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~ 381 (437)
T 4b4t_L 304 TLMELLTQMDGFDNL--GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK 381 (437)
T ss_dssp HHHHHHHHHHSSSCT--TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH
T ss_pred HHHHHHHHhhcccCC--CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 478999999999988 78999999999999999999999999999999999999999999987532 2233555444
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.6e-19 Score=140.45 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=65.8
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC---CCCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI---IEHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~---~~~~l~~~i~~ 78 (90)
++++||++|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|++|++.|++. .....++++.+
T Consensus 304 ~~~~lL~~ldg~~~~--~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~ 381 (434)
T 4b4t_M 304 TMLELLNQLDGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381 (434)
T ss_dssp HHHHHHHHHTTSCSS--CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHH
T ss_pred HHHHHHHHhhccCCC--CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 467899999999988 7899999999999999999999999999999999999999999988752 23334555555
Q ss_pred Hh
Q 038334 79 LL 80 (90)
Q Consensus 79 ll 80 (90)
..
T Consensus 382 ~t 383 (434)
T 4b4t_M 382 ST 383 (434)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.4e-19 Score=138.86 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=64.7
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecC-CCCHHHHHHHHHhhcCC---CCCccHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMS-YCTPCGFRMPASNYLQI---IEHPLFSKIE 77 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~-~p~~~~~~~l~~~~l~~---~~~~l~~~i~ 77 (90)
++++||++|||+.+. .+++||+|||+|+.|||||+||||||++|+|+ +|+.++++.+++.|+.. .....++++.
T Consensus 295 ~l~~lL~~ldg~~~~--~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA 372 (428)
T 4b4t_K 295 ILIELLTQMDGFDQS--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372 (428)
T ss_dssp HHHHHHHHHHHSCSS--CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHH
T ss_pred HHHHHHHHhhCCCCC--CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence 478999999999988 78999999999999999999999999999994 89999999999998753 2233455555
Q ss_pred HH
Q 038334 78 ML 79 (90)
Q Consensus 78 ~l 79 (90)
..
T Consensus 373 ~~ 374 (428)
T 4b4t_K 373 IR 374 (428)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.7e-19 Score=139.00 Aligned_cols=78 Identities=22% Similarity=0.197 Sum_probs=66.8
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC---CCccHHHHHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII---EHPLFSKIEM 78 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~ 78 (90)
+++++|++|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|++|++.|++.. ....++.+.+
T Consensus 332 ~l~~lL~~lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~ 409 (467)
T 4b4t_H 332 TMLELITQLDGFDPR--GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISR 409 (467)
T ss_dssp HHHHHHHHHHSSCCT--TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH
T ss_pred HHHHHHHHhhccCCC--CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 468899999999888 78999999999999999999999999999999999999999999998642 2334555555
Q ss_pred Hhh
Q 038334 79 LLE 81 (90)
Q Consensus 79 ll~ 81 (90)
..+
T Consensus 410 ~T~ 412 (467)
T 4b4t_H 410 LCP 412 (467)
T ss_dssp HCC
T ss_pred HCC
Confidence 443
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.69 E-value=5.9e-18 Score=140.83 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+++||++|||+.+. ++++||+|||+|+.||||++||||||++|+|++|+.++|+++++.|+..
T Consensus 601 ~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~ 663 (806)
T 3cf2_A 601 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp HHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC
T ss_pred HHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcC
Confidence 68999999999887 7899999999999999999999999999999999999999999999874
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.53 E-value=6.7e-15 Score=122.56 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+++||+.|||+.+. .+++||+|||+|+.|||||+||||||++|+|+.|+.++|++|++.|+..
T Consensus 325 v~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 325 VSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp HHHHHTHHHHCCGG--GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhccccc--CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC
Confidence 67899999999887 6799999999999999999999999999999999999999999999864
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.49 E-value=2.6e-14 Score=104.52 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+++++++|||.... ..++++++||+|+.||||++||||||++|++++|+.++++++++.|+.
T Consensus 131 ~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 131 VNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp HHHHHHHHHTCCST--TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHhhhccccc--CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 46889999999776 678889999999999999999999999999999999999999999885
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.39 E-value=5.1e-13 Score=97.86 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+++||+.|||+... .+++||+|||+++.||||++||||||+.|+++.|+.+++.+++++++..
T Consensus 139 ~~~lL~~l~~~~~~--~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 139 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp HHHHHHHHHSSCTT--SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcccCC--CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence 57899999999766 6799999999999999999999999999999999999999999998864
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.36 E-value=4.8e-13 Score=105.66 Aligned_cols=64 Identities=27% Similarity=0.262 Sum_probs=59.0
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
++++||+.|||+.+. .+++||+|||+|+.||||++||||||+.|+++.|+.++++++++.|+..
T Consensus 138 ~l~~LL~~ld~~~~~--~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 138 TLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN 201 (476)
T ss_dssp HHHHHHHHHHHSCGG--GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCC--CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh
Confidence 467899999999776 6899999999999999999999999999999999999999999998764
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.35 E-value=1.8e-12 Score=91.87 Aligned_cols=63 Identities=27% Similarity=0.300 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
++++|+.+||+... .++++|+|||+++.+||+++||||||+.++++.|+.++++++++.|+..
T Consensus 135 ~~~ll~~l~~~~~~--~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 135 LNQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp HHHHHHHHHTCCSS--SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCcccC--CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 56789999998776 6799999999999999999999999999999999999999999988753
No 13
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.29 E-value=2.7e-13 Score=111.90 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+++||+.|||+... .+++||+|||+|+.||||++||||||++|+|++|+.+++..+++.|+..
T Consensus 601 ~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 601 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp HHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred HHHHHHHHhccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 57899999999877 7899999999999999999999999999999999999999999998853
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.28 E-value=6e-12 Score=88.29 Aligned_cols=63 Identities=29% Similarity=0.357 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+..+|+.++++... .++++|+|||+++.||++++||||||+.++++.|+.+++++++++|+..
T Consensus 130 l~~ll~~~~~~~~~--~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 130 LNQLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp HHHHHHHHHTCCTT--CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCCC--CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 56789999998766 6799999999999999999999999999999999999999999988753
No 15
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.26 E-value=6.7e-12 Score=99.61 Aligned_cols=63 Identities=25% Similarity=0.279 Sum_probs=57.8
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+++++|+.|||.... ..++++++||+|+.|||+++||||||++|+++.|+.++++++++.|+.
T Consensus 153 ~l~~LL~~Ldg~~~~--~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 153 TLNQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp HHHHHHHHGGGCCSS--CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccC--ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 357899999999766 678999999999999999999999999999999999999999998865
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.25 E-value=1.6e-11 Score=86.88 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
++.+++.|+|.... ..++++++||+|+.|||+++||||||++|+++.|+.++++++++.+..
T Consensus 139 ~~~ll~~l~g~~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 139 LNQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp HHHHHHHHHTCCTT--CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCC--CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence 46789999998665 557888899999999999999999999999999999999999988764
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=2.1e-11 Score=86.99 Aligned_cols=63 Identities=24% Similarity=0.190 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+..+++.++++... .++++|+|||+++.+||+++|||||++.++++.|+.+++.++++.++..
T Consensus 141 l~~ll~~~~~~~~~--~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 141 LMQLLAEMDGFDAR--GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp HHHHHHHHHTTCSS--SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCC--CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 56788899998776 6799999999999999999999999999999999999999999998764
No 18
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.19 E-value=1.3e-11 Score=90.42 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=54.6
Q ss_pred HHHHHHhcCCC--------C-CCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCCCccHH
Q 038334 4 SRMLTFIDRLW--------L-GYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIEHPLFS 74 (90)
Q Consensus 4 s~lL~~lDG~~--------~-~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 74 (90)
+.||+.||+.. . ....+++||+|||+++.||||++||||||++|+ .|+.+++.++++.++... ....+
T Consensus 130 ~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~-~~~~~ 206 (293)
T 3t15_A 130 ATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD-NVPAE 206 (293)
T ss_dssp HHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG-CCCHH
T ss_pred HHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC-CCCHH
Confidence 67888888664 1 112568999999999999999999999999998 479999999999887632 23344
Q ss_pred HHHHHh
Q 038334 75 KIEMLL 80 (90)
Q Consensus 75 ~i~~ll 80 (90)
.+..+.
T Consensus 207 ~l~~~~ 212 (293)
T 3t15_A 207 DVVKIV 212 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 19
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.16 E-value=7e-11 Score=84.98 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
++.+++.++|.... ..++++++||+|+.|||+++||||||++|+++.|+.++++++++.++.
T Consensus 163 ~~~ll~~lsgg~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 163 LNQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp HHHHHHHHTTCCTT--CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCC--CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 45788899987654 457888899999999999999999999999999999999999998865
No 20
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.11 E-value=1.9e-10 Score=85.40 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIE 69 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~ 69 (90)
++++|+.|||+... ..+++||+|||+|+.||||++| |||+.|+++.|+.+++..+++.+++...
T Consensus 133 ~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~ 196 (322)
T 1xwi_A 133 KTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ 196 (322)
T ss_dssp HHHHHHHHHCSSSC-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccccc-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 46899999999653 1679999999999999999999 9999999999999999999999987543
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.09 E-value=3.8e-11 Score=85.13 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
++.||+.+|+..+. ...+++|+|||+++.|||+++|||||+..|+++.|+.++++++++.++.
T Consensus 135 ~~~ll~~l~~~~~~-~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 135 LNQLLAEMDGFGSE-NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp TTTTTTTTTCSSCS-CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred HHHHHHHhhCcccC-CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 45678888887653 2358899999999999999999999999999999999999999998875
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.06 E-value=2.4e-10 Score=90.09 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
.+.||..||+.... .+++||+|||+++.|||++.|||||+..|+++.|+.+++.++++.++..
T Consensus 325 ~~~LL~~ld~~~~~--~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 325 VSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp HHHHHHHHHHSCTT--SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhccccC--CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 46799999998776 6799999999999999999999999999999999999999999998753
No 23
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.02 E-value=2.7e-11 Score=95.33 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred cHHHHHHHhcCCCCCCCCceEEEEe-cCCCCCcccccCCCCcccceeecCCCCHH
Q 038334 2 TLSRMLTFIDRLWLGYGDERIMIVK-TNHKAKLDLTLLRPGHMDVHIHMSYCTPC 55 (90)
Q Consensus 2 tls~lL~~lDG~~~~~~~~~ivi~t-TN~~e~lDpAllRpGR~D~~I~~~~p~~~ 55 (90)
.+++||+.|||+.+. .++ +++ ||+|+.|||||+||||||++|++++|+..
T Consensus 131 vl~~LL~~~dg~~~~--~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 131 ILDALLPPAKNQWGE--VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHhhccccc--ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 367899999999776 343 454 99999999999999999999999999987
No 24
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.00 E-value=5e-10 Score=82.44 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=56.7
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIE 69 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~ 69 (90)
.+++|+.|||+... ..+++||+|||+|+.||||++| ||+..|+++.|+.++++++++.+++...
T Consensus 138 ~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~ 201 (322)
T 3eie_A 138 KTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP 201 (322)
T ss_dssp HHHHHHHHGGGGTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcccccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC
Confidence 47899999999643 1578999999999999999999 9999999999999999999999987543
No 25
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.92 E-value=1.3e-09 Score=81.87 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIE 69 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~ 69 (90)
.++||..|||+... ..+++||+|||+|+.|||+++| |||+.|+++.|+.++++.+++.++....
T Consensus 171 ~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~ 234 (355)
T 2qp9_X 171 KTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP 234 (355)
T ss_dssp HHHHHHHHHHCC----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhccccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCC
Confidence 56889999998653 1578999999999999999999 9999999999999999999999987543
No 26
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.90 E-value=1.6e-09 Score=83.69 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQIIE 69 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~~ 69 (90)
+++||+.|||+... ..+++||+|||+|+.|||+++| |||+.|+++.|+.+++..+++.+++...
T Consensus 255 ~~~lL~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~ 318 (444)
T 2zan_A 255 KTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ 318 (444)
T ss_dssp HHHHHTTTTCSSCC-CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCcccC-CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 46889999998652 1579999999999999999999 9999999999999999999999987543
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.71 E-value=1.6e-08 Score=76.10 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
.+.||..++|........++||+|||+++.||++++| ||+..|+++.|+.+++..++..++...
T Consensus 235 ~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~ 298 (389)
T 3vfd_A 235 KTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQ 298 (389)
T ss_dssp HHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhc
Confidence 3578999999876434678999999999999999999 999999999999999999999887653
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.71 E-value=2e-08 Score=75.16 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
++++|..++|.......+++||+|||+++.||++++| ||+..++++.|+.++++.++..++..
T Consensus 204 ~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 204 KTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSK 266 (357)
T ss_dssp HHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhh
Confidence 4578999999875434678999999999999999999 99999999999999999999888753
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.64 E-value=5.9e-08 Score=80.16 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.+.|++.++|.... .++++|+|||+++.+||++.|+||||..|+++.|+.+.+..+++.+..
T Consensus 325 ~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 325 VSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp HHHHHHHHHSSCTT--SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhccc--ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 46789999999877 679999999999999999999999999999999999999999988765
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.60 E-value=3.7e-08 Score=70.57 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCCC-CCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 4 SRMLTFIDRLWLG-YGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 4 s~lL~~lDG~~~~-~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
+.+|..+|+.... .+.++++|+|||+|+.|||+++| ||+..++++.|+.+.++.+++.++..
T Consensus 142 ~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~ 204 (297)
T 3b9p_A 142 TEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQK 204 (297)
T ss_dssp HHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 5688999988653 23468899999999999999999 99999999999999999999887653
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.29 E-value=2e-07 Score=71.87 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccc--eeecCCCCH
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDV--HIHMSYCTP 54 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~--~I~~~~p~~ 54 (90)
.++..++.-....++.++|++|||+++.+|||+.||||||+ .++++.|+.
T Consensus 175 ~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 175 SIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp HHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred HHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 35555552222223445556799999999999999999999 777788854
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.45 E-value=6.4e-05 Score=59.46 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=40.1
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.++++|+|||+++.|||+|++ ||+ .|+|+.|+.+++..++++|+
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 357899999999999999999 997 69999999999999998886
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.37 E-value=0.00011 Score=53.19 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=41.6
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
++++|++||+...++|+|++ |||..|+++.|+.+.+..++.++...
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 47899999999999999998 99999999999999999999887653
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.37 E-value=5.2e-05 Score=54.08 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhhcCCC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQII 68 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~~ 68 (90)
+.|++.|+.- . .++++|++||.++ .+||+|.+ ||+.+|+|+.|+.+.+..++.+++...
T Consensus 157 ~~Ll~~l~~~--~--~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 157 EILLQVMENN--R--DDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp HHHHHHHHHC--T--TTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC--C--CCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 5677777742 2 4678889998754 36899998 999999999999999999998887643
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.23 E-value=0.0007 Score=48.33 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=40.8
Q ss_pred ceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
++++|++||+++.++++|.+ |++..++++.|+.+.+..++..++.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHH
Confidence 46889999999999999986 9999999999999999999988764
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.05 E-value=0.00048 Score=48.66 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCH-HHHHHHHHhh
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTP-CGFRMPASNY 64 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~-~~~~~l~~~~ 64 (90)
.|+..+++.... +..+++|+|||+++.+|++.++ +||+..|+++.++. +.+..++...
T Consensus 153 ~L~~~~~~~~~~-~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~~~ 211 (272)
T 1d2n_A 153 ALLVLLKKAPPQ-GRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALELL 211 (272)
T ss_dssp HHHHHTTCCCST-TCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred HHHHHhcCccCC-CCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHHhc
Confidence 445556665433 2467788999999999995444 59999999987665 6666666554
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.03 E-value=0.00053 Score=48.36 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCC--------CCCCCceEEEEe----cCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 3 LSRMLTFIDRLW--------LGYGDERIMIVK----TNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 3 ls~lL~~lDG~~--------~~~~~~~ivi~t----TN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
.+.|+..+++.. .. .++++|++ ++.++.++|+|++ ||+..|+|+.|+.+++..++++
T Consensus 145 ~~~Ll~~le~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKHGMVKT--DHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp HHHHHHHHHCCEEEETTEEEEC--TTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHHHHHhcCCeEecccccccC--CcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 356777787642 12 35778887 5688999999995 9999999999999999999884
No 38
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.98 E-value=0.00085 Score=48.55 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=38.8
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
...++|+|+|..+ .++|+|++ ||+.++++++|+.+++.++++++.+.
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 3466677777443 38999998 99999999999999999999988764
No 39
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.72 E-value=0.00023 Score=54.51 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSY 51 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~ 51 (90)
+.+.+.+||. +.++++|||++.+ ++++||||+|..++..+
T Consensus 245 ~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 245 DNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 4456666663 4567899999999 89999999999998866
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.0017 Score=42.66 Aligned_cols=55 Identities=4% Similarity=-0.002 Sum_probs=43.3
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.|+..++.. . .+..+|++||.++.+++++.+ |+. .+++..++.+....++..++.
T Consensus 121 ~l~~~l~~~--~--~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 121 ALRRTMEMY--S--KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp HHHHHHHHT--T--TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--C--CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 344555542 2 467888999999999999987 777 899999999999999887763
No 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.69 E-value=0.00081 Score=47.75 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=39.5
Q ss_pred ceEEEEecCC--------------------------CCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNH--------------------------KAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~--------------------------~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.++|+|||. ...++|+|+ +|||..+.+..|+.+.+..++++++.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFL--NRLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHH--TTCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHH--hcCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 5779999998 557888988 49999999999999999999988764
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.64 E-value=0.0018 Score=50.07 Aligned_cols=46 Identities=15% Similarity=-0.026 Sum_probs=40.4
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
..+.+|++||.++ .+||++.| ||.. |+|+.|+.+.+..+++.+...
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 4688999999998 69999999 9985 999999999999999876653
No 43
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.59 E-value=0.0023 Score=45.98 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=35.5
Q ss_pred ceEEEEecCCCC-CcccccCCCCcccceeecCCC-CHHHHHHHHHhh
Q 038334 20 ERIMIVKTNHKA-KLDLTLLRPGHMDVHIHMSYC-TPCGFRMPASNY 64 (90)
Q Consensus 20 ~~ivi~tTN~~e-~lDpAllRpGR~D~~I~~~~p-~~~~~~~l~~~~ 64 (90)
..++|+|||..+ .++|+|++ ||+.+++++.| +.+.+..++.+.
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 577888999754 89999999 99999999999 677776777663
No 44
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.59 E-value=0.0024 Score=51.12 Aligned_cols=46 Identities=24% Similarity=0.172 Sum_probs=38.0
Q ss_pred CceEEEEecCCCC-------------CcccccCCCCcccc-eeecCCCCHHHHHHHHHhhcCC
Q 038334 19 DERIMIVKTNHKA-------------KLDLTLLRPGHMDV-HIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 19 ~~~ivi~tTN~~e-------------~lDpAllRpGR~D~-~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
.+..+|+|||.++ .|++||++ |||. .+..++|+.+ .+.++++.+..
T Consensus 433 ~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 4567899999887 89999999 9995 6667889888 88888887764
No 45
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.56 E-value=0.002 Score=52.16 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=39.8
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.++.+|+|||..+ .+|||+.| ||. .|+|+.|+.+++..+++.+..
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTT
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 4688999999998 79999999 995 599999999999999987654
No 46
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.53 E-value=0.0045 Score=40.84 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
..|+..++.. . .+..+|++||+++.+++++.+ |+ ..|+++.++.++..+++..++.
T Consensus 144 ~~l~~~l~~~--~--~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 144 NALLKTLEEP--P--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp HHHHHHHHSC--C--TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--C--CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHH
Confidence 4456666532 2 568889999999999999886 53 6899999999999999988774
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0072 Score=43.44 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=38.4
Q ss_pred CceEEEEecCCC---CCcccccCCCCcccc-eeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHK---AKLDLTLLRPGHMDV-HIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~---e~lDpAllRpGR~D~-~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.++.+|++||.+ +.+++++.+ |+.. .|+|+.++.+++..++..++.
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 568899999988 789999987 8875 899999999999999987653
No 48
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.22 E-value=0.0052 Score=49.76 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=35.4
Q ss_pred ceEEEEecCCCCC------------cccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKAK------------LDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e~------------lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.++|+|||.+.. +.|+|+ +|||..|.|+.++.+.+..++.+++.
T Consensus 620 ~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~--~Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 620 NTILIMTSNVGASEKDKVMGELKRAFRPEFI--NRIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp TCEEEEEESSSTTCCHHHHHHHHHHSCHHHH--TTSSEEEECC--CHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCChhhHHHHHHHHHhhCCHHHH--hhCCeEEecCCCCHHHHHHHHHHHHH
Confidence 5789999997654 666666 59999999999999999999887664
No 49
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.0083 Score=43.48 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=39.3
Q ss_pred CceEEEEecCCC---CCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHK---AKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~---e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.++.+|++||.+ +.+++++.+ |+...|+|+.++.++...++..++
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHH
Confidence 367888999987 789999887 887799999999999999998875
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.04 E-value=0.00063 Score=43.78 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=33.8
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHH
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPA 61 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~ 61 (90)
.++.+|++||.++ .+||++.+ ||+ .|++..|+.+++++++
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 3577888999876 78999998 999 6999999999887654
No 51
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.86 E-value=0.0067 Score=48.90 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=38.6
Q ss_pred ceEEEEecCCCC-------------------------CcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKA-------------------------KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e-------------------------~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.++|+|||.+. .++|+|+. |||..|.|+.++.+.+..++.+++.
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 578999999754 67888885 9999999999999999999988764
No 52
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.78 E-value=0.011 Score=42.92 Aligned_cols=36 Identities=6% Similarity=-0.004 Sum_probs=31.5
Q ss_pred CCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 29 HKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 29 ~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
.++.++|+|++ |+.. |+|+.|+.++++.++++++..
T Consensus 239 ~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 239 SPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp EETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHH
Confidence 58899999998 8877 899999999999999887653
No 53
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.66 E-value=0.0054 Score=44.05 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=33.0
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHH
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPA 61 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~ 61 (90)
.+..+|++||+++.++|++.+ |+. .++|..|+.+++..++
T Consensus 135 ~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 135 SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMM 174 (324)
T ss_dssp GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHH
T ss_pred CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHH
Confidence 357888999999999999998 775 6999999988755444
No 54
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.52 E-value=0.011 Score=46.79 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=34.7
Q ss_pred ceEEEEecCCCCC---cccccCCCCcccceeecCCCCH-HHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKAK---LDLTLLRPGHMDVHIHMSYCTP-CGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e~---lDpAllRpGR~D~~I~~~~p~~-~~~~~l~~~~l~ 66 (90)
.+++|+|||.+.. +.+|+++ ||+.+|++++|+. +.++.+++.+..
T Consensus 149 ~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 149 MRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 4577889996322 4458887 9999999999997 678888887654
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.41 E-value=0.013 Score=47.13 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=40.4
Q ss_pred HHHhcCCCCCCCCceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 7 LTFIDRLWLGYGDERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 7 L~~lDG~~~~~~~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.+.+..+... .+..+|++||.++ .+||+|.| ||+ .|+|+.|+.+++.++++.+.
T Consensus 304 ~~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 304 ANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence 3444444444 5678888998754 58999998 998 69999999999888876543
No 56
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.37 E-value=0.0069 Score=43.67 Aligned_cols=57 Identities=11% Similarity=0.230 Sum_probs=40.4
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCC---CcccccCCCCccc--ceeecCCCCHHHHHHHHHhhcC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKA---KLDLTLLRPGHMD--VHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e---~lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.++..++..... ..++++.++|.++ .++++|.+ |++ ..++++. +.+++..+++.++.
T Consensus 119 ~l~~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 119 EFFHIFNTLYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp HHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 344444444333 3456666666666 68999987 886 7799999 99999999988764
No 57
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.14 E-value=0.046 Score=38.30 Aligned_cols=45 Identities=4% Similarity=-0.014 Sum_probs=38.4
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.+.++|++||.++.++|++.+ |+. .++|..|+.+.+..++..++.
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHH
Confidence 567888999999999999987 554 799999999999888887654
No 58
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.10 E-value=0.025 Score=40.46 Aligned_cols=55 Identities=4% Similarity=-0.100 Sum_probs=41.6
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.|+..|+... ....+|++||+++.++|++.+ |+. .+++..++.+.....+...+.
T Consensus 152 ~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 152 ALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp HHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 4555555431 345677889999999999987 775 789999999998888877654
No 59
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.02 E-value=0.012 Score=54.59 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=38.5
Q ss_pred ceEEEEecCCCC-----CcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
++.+|+|||+|. .|||+++| || ..|+++.|+.++++.|++.++.
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 468889999994 89999999 88 7799999999999999877653
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.77 E-value=0.038 Score=39.50 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCC---CCcccccCCCCccc-ceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHK---AKLDLTLLRPGHMD-VHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~---e~lDpAllRpGR~D-~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
..++..++.. .. .++.+|++||.+ +.+++++.+ |+. +.|+++.++.++..+++..++.
T Consensus 150 ~~l~~~~~~~-~~--~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 150 YKLSRINSEV-NK--SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHHHHHSC-CC----EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHhhchhhc-CC--CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 3455555554 22 468888999987 578888876 565 4899999999999999987653
No 61
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.63 E-value=0.11 Score=37.99 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=25.2
Q ss_pred cccccCCCCcccceeecCCCCHHHHHHHHHh
Q 038334 33 LDLTLLRPGHMDVHIHMSYCTPCGFRMPASN 63 (90)
Q Consensus 33 lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~ 63 (90)
++|+|+ +|||..+.|..|+.+.+..++..
T Consensus 239 ~~~~l~--~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 239 LIPEFI--GRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp CCHHHH--TTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCHHHh--cccCeeeecCCCCHHHHHHHHHH
Confidence 566766 59999999999999999998876
No 62
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.62 E-value=0.038 Score=38.84 Aligned_cols=55 Identities=5% Similarity=-0.011 Sum_probs=42.1
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.|+..++.. . .+..+|++||.++.++|++.. |+. .++|..++.+....++..++.
T Consensus 129 ~L~~~le~~--~--~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 129 ALRRTMEMF--S--SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp HHHHHHHHT--T--TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--C--CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHH
Confidence 455555532 2 457888899999999999886 665 789999999999888887654
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.39 E-value=0.016 Score=47.66 Aligned_cols=44 Identities=16% Similarity=-0.031 Sum_probs=36.7
Q ss_pred CceEEEEecCCCC----CcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKA----KLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e----~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.++.+|++||.++ .+||+|.| ||+. |+|+.|+.+++..+++.++
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHH
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhh
Confidence 3577889999875 48999999 9996 9999999999888886543
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.23 E-value=0.06 Score=38.71 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+.|+..++.. . .++++|++||.++.+++++.. |+ ..+++..++.++...++..++
T Consensus 137 ~~Ll~~le~~--~--~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 137 NALLKTLEEP--P--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp HHHHHHHHSC--C--SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--C--CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHH
Confidence 4456666542 2 568889999999999999886 54 689999999999999888766
No 65
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.16 E-value=0.078 Score=38.75 Aligned_cols=56 Identities=13% Similarity=-0.037 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 4 SRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 4 s~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.||..++. .+ ++.++|++||+++.|.|++.. |. ..++|..|+.++..+.+.....
T Consensus 126 naLLk~lEe--p~--~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~~ 181 (334)
T 1a5t_A 126 NALLKTLEE--PP--AETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREVT 181 (334)
T ss_dssp HHHHHHHTS--CC--TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHCC
T ss_pred HHHHHHhcC--CC--CCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhcC
Confidence 456666653 22 568889999999999999997 55 3699999999998888877763
No 66
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.04 E-value=0.0024 Score=41.15 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=26.9
Q ss_pred CceEEEEecCCCC-----CcccccCCCCcccceeecCCCC
Q 038334 19 DERIMIVKTNHKA-----KLDLTLLRPGHMDVHIHMSYCT 53 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----~lDpAllRpGR~D~~I~~~~p~ 53 (90)
.++++|++||.++ .+||++.+ ||+. |+++.|+
T Consensus 151 ~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 4578889999876 68999999 9995 9999885
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.01 E-value=0.015 Score=44.63 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCC-CCC---cccccCCCCccc--ceeecCCCCHHHHHHHHHhhc
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNH-KAK---LDLTLLRPGHMD--VHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~-~e~---lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~~l 65 (90)
.++..++.+... +..+|++|++ ++. ++++|+. ||+ ..++++.|+.+++..++..++
T Consensus 215 ~l~~~l~~l~~~---~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 215 ELFHTFNELHDS---GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp HHHHHHHHHHTT---TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 344555544333 3344445554 554 8899987 776 889999999999999998765
No 68
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.98 E-value=0.014 Score=39.07 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=38.0
Q ss_pred HHHHHhcCCCCCCCCceEEEEecC-CCC---CcccccCCCCccc--ceeecCCCCHHHHHHHHHhhcC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTN-HKA---KLDLTLLRPGHMD--VHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN-~~e---~lDpAllRpGR~D--~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
.|+..++..... ....+|++|| .++ .+++++.+ |++ ..++++.|+.+.+.+++..++.
T Consensus 125 ~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 125 AIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 344555444332 2232555555 454 56688876 665 8999999999999999988764
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.94 E-value=0.061 Score=38.67 Aligned_cols=54 Identities=6% Similarity=0.057 Sum_probs=42.3
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.|+..+... . .+..+|++||.++.+.|++.. |+ ..++|..|+.+++...++..+
T Consensus 153 ~L~~~le~~--~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 153 ALRRTMEKY--S--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp HHHHHHHHS--T--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhh--c--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 455555432 2 457888999999999999886 66 789999999999988888765
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.73 E-value=0.058 Score=37.85 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=36.9
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.+..+|++||.++.++|++.. |+. .++|..|+.+....++..++
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHH
Confidence 467888899999999999987 443 89999999999988887764
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.24 E-value=0.081 Score=43.56 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=35.5
Q ss_pred ceEEEEecCCC--------------------------CCcccccCCCCcccceeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHK--------------------------AKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~--------------------------e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
+.++|+|||.+ ..+.|+|+ +|||..+.|..++.+.+..++.+++.
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~--~Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFL--NRLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHH--HTCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHH--HhcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 67899999972 23344444 69999999999999999999888764
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.66 E-value=0.11 Score=38.00 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=38.2
Q ss_pred eEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
..++.+||++..|++++.+ ||...+.++.++.+.+.+++++..
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHH
Confidence 5667799999999999998 999999999999999999987754
No 73
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.13 E-value=0.2 Score=36.71 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=18.1
Q ss_pred CcccceeecCCCCHHHHHHHHH
Q 038334 41 GHMDVHIHMSYCTPCGFRMPAS 62 (90)
Q Consensus 41 GR~D~~I~~~~p~~~~~~~l~~ 62 (90)
+|++..|.|..++.+....++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHh
Confidence 4788888998888888888775
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.73 E-value=0.12 Score=37.21 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=37.1
Q ss_pred ceEEEEecCCC---CCcccccCCCCcccc-eeecCCCCHHHHHHHHHhhcC
Q 038334 20 ERIMIVKTNHK---AKLDLTLLRPGHMDV-HIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 20 ~~ivi~tTN~~---e~lDpAllRpGR~D~-~I~~~~p~~~~~~~l~~~~l~ 66 (90)
++.+|++||.+ +.+++.+.+ |+.. .|+|+.++.++...++...+.
T Consensus 159 ~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred CEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 67888999988 778888776 7765 899999999998888877654
No 75
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.65 E-value=0.26 Score=38.54 Aligned_cols=56 Identities=13% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHHhcCCCCC------CCCceEEEEec----CCCCCcccccCCCCcccceeecCCCCHHHHHHHHH
Q 038334 5 RMLTFIDRLWLG------YGDERIMIVKT----NHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPAS 62 (90)
Q Consensus 5 ~lL~~lDG~~~~------~~~~~ivi~tT----N~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~ 62 (90)
.||..|||-..+ ...++++|+|. +.|..+-|.|+ |||+..|+++..+.+.+..++.
T Consensus 281 aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~--~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 281 DLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp HHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHH--TTCCEEEECCCCCHHHHHHHHH
T ss_pred HHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHh--cccceeeeCCCCCHHHHHHHHH
Confidence 688889984210 01467888876 24444557765 7999999999999999988883
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.92 E-value=0.94 Score=32.65 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=35.0
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
....+|++||.++.+.|++.. |+. .++|..++.+.....+...+
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHH
Confidence 356778899999999999986 664 68888888888777776655
No 77
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.60 E-value=0.44 Score=36.71 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=34.8
Q ss_pred ceEEEEec--CCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 20 ERIMIVKT--NHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 20 ~~ivi~tT--N~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
.+++|++| |....++++|++ |+. .+.+..|+.+.+..++.+++..
T Consensus 134 ~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 134 TITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp SCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 45666655 445689999998 665 6779999999999999887653
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.56 E-value=0.37 Score=35.28 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHHhcCCCCCCCCceEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhcCC
Q 038334 5 RMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYLQI 67 (90)
Q Consensus 5 ~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l~~ 67 (90)
.||..|.- .+ +..++|++||+++.|-|++.. | .++|..++.+...+.+.+.++.
T Consensus 101 aLLk~LEe--p~--~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~~i 154 (305)
T 2gno_A 101 AFLKALEE--PP--EYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKIGD 154 (305)
T ss_dssp HTHHHHHS--CC--TTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHHTT
T ss_pred HHHHHHhC--CC--CCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHhCC
Confidence 45555552 22 568888899999999999986 5 8999999999988888776543
No 79
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.96 E-value=0.88 Score=33.86 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=34.8
Q ss_pred CceEEEEecCCCCC----cccccCCCCccc-ceeecCCCCHHHHHHHHHhhcC
Q 038334 19 DERIMIVKTNHKAK----LDLTLLRPGHMD-VHIHMSYCTPCGFRMPASNYLQ 66 (90)
Q Consensus 19 ~~~ivi~tTN~~e~----lDpAllRpGR~D-~~I~~~~p~~~~~~~l~~~~l~ 66 (90)
..+++|+.+|..+. |++++.. |++ ..|+|...+.++...++++-+.
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 35788899998875 4455443 776 5899999999999998876543
No 80
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.64 E-value=1.9 Score=32.77 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.4
Q ss_pred CCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 30 KAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 30 ~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
|+.|+|.++- |+-. ++|+.++.++..+++++..
T Consensus 347 ~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~ 379 (456)
T 2c9o_A 347 PHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRA 379 (456)
T ss_dssp ETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHH
T ss_pred cccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHH
Confidence 7889998886 7766 6999999999988887653
No 81
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=77.42 E-value=1.1 Score=30.97 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=28.8
Q ss_pred CceEEEEecCCCCCcccccCCCCcccceeecCCCCHH
Q 038334 19 DERIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPC 55 (90)
Q Consensus 19 ~~~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~ 55 (90)
.+.-+|++|+.++.||.++.+ |++.++++..+...
T Consensus 122 ~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 122 QGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp TTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred CCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccC
Confidence 466778888889999999765 99999999876543
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=74.37 E-value=1.4 Score=31.76 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=32.8
Q ss_pred CceEEEEecCCCC---Ccc---cccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 19 DERIMIVKTNHKA---KLD---LTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 19 ~~~ivi~tTN~~e---~lD---pAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
.++.+|++||.++ .++ +.+.+ |+...++++.++.++..+++..++
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHH
Confidence 4577888888776 455 66655 344459999999999999887654
No 83
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=74.23 E-value=2 Score=24.88 Aligned_cols=30 Identities=10% Similarity=-0.227 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHhhcCCCC---CccHHHHHHH
Q 038334 50 SYCTPCGFRMPASNYLQIIE---HPLFSKIEML 79 (90)
Q Consensus 50 ~~p~~~~~~~l~~~~l~~~~---~~l~~~i~~l 79 (90)
++|+.++|++|++.|++... ...++++.+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~ 33 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAEL 33 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHH
Confidence 58999999999999987532 2345555543
No 84
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.16 E-value=3 Score=39.90 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=35.9
Q ss_pred ceEEEEecCCC-----CCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 20 ERIMIVKTNHK-----AKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 20 ~~ivi~tTN~~-----e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+..+|+|+|.| ..|+|+++| ||-. +++++|+.++...|+..++
T Consensus 1422 d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1422 KIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHH
Confidence 46688899987 569999998 8866 9999999999999976553
No 85
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.35 E-value=6.3 Score=30.35 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=26.5
Q ss_pred eEEEEecCCCCCcccccCCCCcccceeecCCCCHHHHHHHHHhhc
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGHMDVHIHMSYCTPCGFRMPASNYL 65 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR~D~~I~~~~p~~~~~~~l~~~~l 65 (90)
+|+++++.....+.+ +. |....|+|+.|+.++++.++...+
T Consensus 182 iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp EEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHH
Confidence 343333333444543 33 556689999999999888886654
No 86
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=70.68 E-value=2.1 Score=29.43 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=26.4
Q ss_pred ceEEEEecCCC-------CCcccccCCCCccc-ceeecCCCCH--HHHHHHHHhh
Q 038334 20 ERIMIVKTNHK-------AKLDLTLLRPGHMD-VHIHMSYCTP--CGFRMPASNY 64 (90)
Q Consensus 20 ~~ivi~tTN~~-------e~lDpAllRpGR~D-~~I~~~~p~~--~~~~~l~~~~ 64 (90)
++.+|+|||.+ ..++++|.. ||+ ..|+++..+. +....++.+|
T Consensus 141 ~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~ 193 (265)
T 2bjv_A 141 NVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYF 193 (265)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHH
T ss_pred CeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHH
Confidence 46788999974 246677775 775 3566655443 4455555544
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=57.08 E-value=5 Score=24.02 Aligned_cols=32 Identities=16% Similarity=-0.141 Sum_probs=22.9
Q ss_pred ecCCCCHHHHHHHHHhhcCCC---CCccHHHHHHH
Q 038334 48 HMSYCTPCGFRMPASNYLQII---EHPLFSKIEML 79 (90)
Q Consensus 48 ~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~l 79 (90)
+-+.||.++|++|++.|++.. ....++++.+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~ 41 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAEL 41 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHH
Confidence 457899999999999998743 23445555543
No 88
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=53.56 E-value=6.6 Score=28.17 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=8.8
Q ss_pred ceEEEEecCCC
Q 038334 20 ERIMIVKTNHK 30 (90)
Q Consensus 20 ~~ivi~tTN~~ 30 (90)
++.+|+|||++
T Consensus 137 ~~riI~atn~~ 147 (304)
T 1ojl_A 137 DVRLIAATHRD 147 (304)
T ss_dssp CCEEEEEESSC
T ss_pred CeEEEEecCcc
Confidence 46788999986
No 89
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=49.78 E-value=3.4 Score=31.24 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEecCCCCCccccc
Q 038334 3 LSRMLTFIDRLWLGYGDERIMIVKTNHKAKLDLTL 37 (90)
Q Consensus 3 ls~lL~~lDG~~~~~~~~~ivi~tTN~~e~lDpAl 37 (90)
+.++|..|+++... .+..+|++|| +...|+++
T Consensus 211 lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 211 AFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 56788888888665 4678888888 77788874
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=48.72 E-value=3.2 Score=32.71 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=23.1
Q ss_pred ceEEEEecCCC--CCcccccCCCCccc---ceeecC
Q 038334 20 ERIMIVKTNHK--AKLDLTLLRPGHMD---VHIHMS 50 (90)
Q Consensus 20 ~~ivi~tTN~~--e~lDpAllRpGR~D---~~I~~~ 50 (90)
...+|+|||+. +.++|+|++ ||+ .++++.
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~ 285 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMR 285 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECC
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeecc
Confidence 46789999987 789999998 887 566653
No 91
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=37.29 E-value=14 Score=29.53 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=22.2
Q ss_pred CceEEEEecCCCC-----------CcccccCCCCccccee-ecCCCCHHH
Q 038334 19 DERIMIVKTNHKA-----------KLDLTLLRPGHMDVHI-HMSYCTPCG 56 (90)
Q Consensus 19 ~~~ivi~tTN~~e-----------~lDpAllRpGR~D~~I-~~~~p~~~~ 56 (90)
....||+|+|..+ .|.++++= |||+.+ -+++|+.+.
T Consensus 338 arf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 338 ARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred CCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 3467888999776 67778886 999854 457877554
No 92
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=28.76 E-value=44 Score=24.62 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=30.1
Q ss_pred eEEEEecCCCCCcccccCCCCcc--cceeec-------CCCCHHHHHHHHHhh
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGHM--DVHIHM-------SYCTPCGFRMPASNY 64 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR~--D~~I~~-------~~p~~~~~~~l~~~~ 64 (90)
-+||.|+..|+.+.+..++||-+ |.-|.- |--|+++.++.+..+
T Consensus 204 DIVI~Avg~p~lI~~~~vk~GavVIDVgi~r~~~g~l~GDVdf~~v~~~a~~i 256 (288)
T 1b0a_A 204 DLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYI 256 (288)
T ss_dssp SEEEECSCCTTCBCTTTSCTTCEEEECCCEECTTSCEECSBCHHHHHHHCSEE
T ss_pred CEEEECCCCcCcCCHHHcCCCcEEEEccCCccCCCCccCCcCHHHHhhhccEe
Confidence 48899999999999999999983 444442 334455555544433
No 93
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=23.18 E-value=53 Score=19.70 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=16.7
Q ss_pred CceEEEEecCC-------CCCcccccCCCCc
Q 038334 19 DERIMIVKTNH-------KAKLDLTLLRPGH 42 (90)
Q Consensus 19 ~~~ivi~tTN~-------~e~lDpAllRpGR 42 (90)
++.++|-+++. ...+|+..|+||-
T Consensus 30 d~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~ 60 (85)
T 3h43_A 30 ERKVVVKSSTGPSFLVNVSHFVNPDDLAPGK 60 (85)
T ss_dssp TTEEEEEETTSSEEEEEBCTTSCGGGCCTTC
T ss_pred CCEEEEEeCCCCeEEEEecCccCHHHCCCCC
Confidence 34566666654 3568889999995
No 94
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=22.63 E-value=76 Score=21.07 Aligned_cols=29 Identities=3% Similarity=-0.106 Sum_probs=23.2
Q ss_pred ccCCCCcccceeecCCCCHHHHHHHHHhh
Q 038334 36 TLLRPGHMDVHIHMSYCTPCGFRMPASNY 64 (90)
Q Consensus 36 AllRpGR~D~~I~~~~p~~~~~~~l~~~~ 64 (90)
..+||||-|....+..|+.+....+...+
T Consensus 94 ~yl~P~~~~~~a~~~~~~~~~~~~i~~~l 122 (165)
T 3lmb_A 94 KYIAPVYGRIRAICHAPDEEELANFFDHF 122 (165)
T ss_dssp EECSCCCSCEEEEEECCCHHHHHHHHHHH
T ss_pred EEccCccCCeEEEEEeCcHHHHHHHHHHH
Confidence 46799999999999999887766666554
No 95
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=22.52 E-value=66 Score=23.64 Aligned_cols=22 Identities=9% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEecCCCCCcccccCCCCc
Q 038334 21 RIMIVKTNHKAKLDLTLLRPGH 42 (90)
Q Consensus 21 ~ivi~tTN~~e~lDpAllRpGR 42 (90)
-+||.|+..|..+++..++||-
T Consensus 206 DIVI~Avg~p~~I~~~~vk~Ga 227 (286)
T 4a5o_A 206 DLVVVAAGKPGLVKGEWIKEGA 227 (286)
T ss_dssp SEEEECCCCTTCBCGGGSCTTC
T ss_pred CEEEECCCCCCCCCHHHcCCCe
Confidence 5888999999999999999997
No 96
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.63 E-value=62 Score=20.17 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=16.9
Q ss_pred CceEEEEecCCC-------CCcccccCCCCc
Q 038334 19 DERIMIVKTNHK-------AKLDLTLLRPGH 42 (90)
Q Consensus 19 ~~~ivi~tTN~~-------e~lDpAllRpGR 42 (90)
++.++|.+++.+ ..+|+..|+||-
T Consensus 49 ~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~ 79 (109)
T 2wg5_A 49 DGRVVVKSSTGPKFVVNTSQYINEEELKPGA 79 (109)
T ss_dssp TSCEEEEETTSCEEEECBCTTSCTTTCCTTC
T ss_pred CCEEEEEeCCCCEEEEEcccccCHHHCCCCC
Confidence 345666666443 678999999996
No 97
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=21.37 E-value=55 Score=24.32 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=24.2
Q ss_pred eEEEEecCCCCC-cccccCCCCcccceeecCCC
Q 038334 21 RIMIVKTNHKAK-LDLTLLRPGHMDVHIHMSYC 52 (90)
Q Consensus 21 ~ivi~tTN~~e~-lDpAllRpGR~D~~I~~~~p 52 (90)
-+||.+|..|+. +++..++||. ..|.++.|
T Consensus 247 DIVIsAtg~p~~vI~~e~vk~Ga--vVIDVgi~ 277 (320)
T 1edz_A 247 DVVITGVPSENYKFPTEYIKEGA--VCINFACT 277 (320)
T ss_dssp SEEEECCCCTTCCBCTTTSCTTE--EEEECSSS
T ss_pred CEEEECCCCCcceeCHHHcCCCe--EEEEcCCC
Confidence 488899999998 9999999996 45555555
Done!