Query 038338
Match_columns 421
No_of_seqs 254 out of 3624
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.8E-43 2.1E-47 351.2 15.1 373 1-389 393-787 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.9E-32 4.2E-37 290.5 23.0 376 2-417 419-843 (1153)
3 PLN00113 leucine-rich repeat r 99.9 9.2E-25 2E-29 231.5 17.9 269 121-409 89-366 (968)
4 PLN00113 leucine-rich repeat r 99.9 3.1E-24 6.7E-29 227.5 18.2 229 123-356 116-367 (968)
5 KOG0444 Cytoskeletal regulator 99.9 3.2E-24 7E-29 199.5 -0.7 279 119-418 97-381 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.5E-24 9.7E-29 198.6 -5.0 277 120-416 50-355 (1255)
7 KOG4194 Membrane glycoprotein 99.8 6.8E-22 1.5E-26 182.7 3.7 279 122-416 99-408 (873)
8 KOG4194 Membrane glycoprotein 99.8 6.2E-22 1.3E-26 182.9 2.4 270 125-410 149-427 (873)
9 PLN03210 Resistant to P. syrin 99.8 7E-20 1.5E-24 195.1 17.9 273 124-416 588-910 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 1.2E-20 2.5E-25 167.3 0.8 278 120-410 201-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 1.7E-21 3.6E-26 172.6 -7.1 264 126-415 46-312 (565)
12 KOG0617 Ras suppressor protein 99.7 1.1E-19 2.4E-24 143.1 -4.7 167 137-317 23-192 (264)
13 KOG0617 Ras suppressor protein 99.7 9E-19 2E-23 138.0 -5.0 163 117-284 25-191 (264)
14 PRK15370 E3 ubiquitin-protein 99.7 5.5E-16 1.2E-20 155.5 13.0 247 125-410 178-426 (754)
15 PRK15387 E3 ubiquitin-protein 99.6 9.7E-15 2.1E-19 145.9 16.8 136 124-281 221-357 (788)
16 KOG0618 Serine/threonine phosp 99.6 5.5E-17 1.2E-21 158.0 -0.2 244 145-412 217-489 (1081)
17 PRK15370 E3 ubiquitin-protein 99.6 6.5E-15 1.4E-19 147.9 11.6 228 123-385 197-428 (754)
18 PRK15387 E3 ubiquitin-protein 99.5 9.6E-14 2.1E-18 138.8 13.3 223 124-391 241-464 (788)
19 cd00116 LRR_RI Leucine-rich re 99.5 7.5E-15 1.6E-19 136.2 4.4 40 345-385 250-291 (319)
20 KOG0618 Serine/threonine phosp 99.5 1.9E-15 4.1E-20 147.5 0.3 267 127-418 23-328 (1081)
21 cd00116 LRR_RI Leucine-rich re 99.5 2.6E-14 5.5E-19 132.6 6.0 232 169-410 19-289 (319)
22 KOG4658 Apoptotic ATPase [Sign 99.4 1.3E-12 2.7E-17 133.6 8.8 220 121-356 541-781 (889)
23 KOG4237 Extracellular matrix p 99.4 2.6E-14 5.7E-19 127.1 -3.1 123 149-274 69-196 (498)
24 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.6E-18 123.0 -3.7 281 112-410 55-357 (498)
25 KOG0532 Leucine-rich repeat (L 99.2 1.5E-12 3.2E-17 121.2 -3.7 181 123-319 73-255 (722)
26 PF14580 LRR_9: Leucine-rich r 99.1 5.2E-11 1.1E-15 98.1 4.3 108 140-251 12-123 (175)
27 KOG0532 Leucine-rich repeat (L 99.1 2.2E-12 4.9E-17 120.1 -4.2 195 172-383 74-271 (722)
28 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.4E-16 111.0 1.3 63 123-185 119-184 (505)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-10 2.6E-15 95.9 5.8 127 120-250 14-149 (175)
30 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.5E-16 106.8 -1.1 187 120-316 209-417 (490)
31 KOG3207 Beta-tubulin folding c 99.1 3.5E-11 7.6E-16 108.9 0.7 204 145-358 119-339 (505)
32 KOG1259 Nischarin, modulator o 98.9 3.4E-10 7.3E-15 97.8 1.3 175 170-356 211-410 (490)
33 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.9E-14 104.1 5.1 143 174-327 141-284 (394)
34 COG4886 Leucine-rich repeat (L 98.9 2.5E-09 5.3E-14 102.3 5.9 182 120-316 111-295 (394)
35 KOG2120 SCF ubiquitin ligase, 98.8 3E-10 6.5E-15 98.0 -2.4 178 219-409 186-373 (419)
36 KOG1909 Ran GTPase-activating 98.8 3E-09 6.4E-14 94.0 2.8 163 143-310 26-225 (382)
37 KOG2120 SCF ubiquitin ligase, 98.8 2.2E-10 4.8E-15 98.8 -4.3 178 198-383 187-374 (419)
38 PLN03150 hypothetical protein; 98.7 7.3E-08 1.6E-12 96.8 8.9 104 197-309 419-526 (623)
39 KOG1909 Ran GTPase-activating 98.6 6.1E-09 1.3E-13 92.0 -0.2 232 122-357 27-310 (382)
40 KOG4341 F-box protein containi 98.6 1.9E-09 4.1E-14 97.3 -3.6 279 125-413 138-440 (483)
41 PLN03150 hypothetical protein; 98.6 1.4E-07 3E-12 94.8 9.2 103 174-277 419-526 (623)
42 PF13855 LRR_8: Leucine rich r 98.5 8.5E-08 1.8E-12 64.9 3.7 56 174-229 2-60 (61)
43 KOG0531 Protein phosphatase 1, 98.5 6.6E-09 1.4E-13 99.6 -2.9 107 170-279 92-199 (414)
44 KOG3665 ZYG-1-like serine/thre 98.5 6.9E-08 1.5E-12 96.8 3.1 147 124-272 121-281 (699)
45 KOG1859 Leucine-rich repeat pr 98.5 1.2E-09 2.6E-14 104.9 -8.9 179 120-310 104-291 (1096)
46 KOG0531 Protein phosphatase 1, 98.4 1.6E-08 3.5E-13 96.9 -3.3 173 121-311 91-268 (414)
47 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.3E-12 62.2 3.7 57 219-276 2-59 (61)
48 KOG2982 Uncharacterized conser 98.4 1.9E-07 4.1E-12 81.0 2.5 82 170-251 68-156 (418)
49 KOG4341 F-box protein containi 98.2 4.2E-08 9E-13 88.8 -4.4 277 121-406 160-459 (483)
50 PF12799 LRR_4: Leucine Rich r 98.2 2.7E-06 5.9E-11 52.7 4.1 37 174-210 2-38 (44)
51 KOG3665 ZYG-1-like serine/thre 98.1 1E-06 2.2E-11 88.5 2.4 134 147-280 122-264 (699)
52 KOG1859 Leucine-rich repeat pr 98.1 1.5E-07 3.3E-12 90.9 -3.9 128 146-280 83-223 (1096)
53 KOG2982 Uncharacterized conser 98.0 6.6E-07 1.4E-11 77.8 -0.9 208 175-389 47-266 (418)
54 PF12799 LRR_4: Leucine Rich r 98.0 9.1E-06 2E-10 50.4 4.2 33 219-251 2-34 (44)
55 PRK15386 type III secretion pr 98.0 2.5E-05 5.4E-10 72.7 8.2 54 217-276 51-104 (426)
56 KOG4579 Leucine-rich repeat (L 98.0 5.5E-07 1.2E-11 69.2 -2.4 109 126-236 28-141 (177)
57 KOG4579 Leucine-rich repeat (L 97.9 1.4E-06 3.1E-11 67.0 -1.5 112 147-260 27-141 (177)
58 KOG1644 U2-associated snRNP A' 97.7 8.1E-05 1.7E-09 61.4 5.7 81 170-250 61-149 (233)
59 PRK15386 type III secretion pr 97.7 0.00016 3.4E-09 67.5 8.0 73 123-207 50-123 (426)
60 KOG1644 U2-associated snRNP A' 97.6 0.00014 3.1E-09 60.0 5.4 102 125-228 42-150 (233)
61 COG5238 RNA1 Ran GTPase-activa 97.5 0.00023 5.1E-09 61.5 5.5 142 263-410 154-314 (388)
62 KOG2123 Uncharacterized conser 97.5 7.5E-06 1.6E-10 70.7 -3.5 100 172-272 18-123 (388)
63 COG5238 RNA1 Ran GTPase-activa 97.2 0.00065 1.4E-08 58.8 5.6 217 171-410 28-283 (388)
64 KOG1947 Leucine rich repeat pr 97.2 4.4E-05 9.6E-10 75.0 -2.3 127 145-273 186-328 (482)
65 KOG2739 Leucine-rich acidic nu 96.9 0.0005 1.1E-08 59.2 2.3 80 171-250 63-152 (260)
66 KOG2123 Uncharacterized conser 96.9 6.8E-05 1.5E-09 64.9 -3.1 105 195-304 18-123 (388)
67 KOG1947 Leucine rich repeat pr 96.6 0.00023 4.9E-09 70.0 -2.2 133 167-305 182-328 (482)
68 KOG2739 Leucine-rich acidic nu 96.5 0.0014 3.1E-08 56.5 2.3 112 122-236 40-161 (260)
69 KOG3864 Uncharacterized conser 96.1 0.00046 1E-08 57.1 -3.0 78 336-416 116-193 (221)
70 PF00560 LRR_1: Leucine Rich R 96.1 0.0027 5.8E-08 32.6 0.8 21 219-239 1-21 (22)
71 PF13306 LRR_5: Leucine rich r 95.9 0.027 5.8E-07 44.2 6.3 19 164-182 26-44 (129)
72 PF13306 LRR_5: Leucine rich r 95.8 0.039 8.4E-07 43.2 6.9 105 165-275 4-112 (129)
73 PF00560 LRR_1: Leucine Rich R 95.7 0.0041 9E-08 31.9 0.6 21 174-194 1-21 (22)
74 PF13504 LRR_7: Leucine rich r 94.8 0.02 4.4E-07 27.2 1.5 16 219-234 2-17 (17)
75 PF13504 LRR_7: Leucine rich r 94.3 0.031 6.7E-07 26.5 1.4 16 174-189 2-17 (17)
76 KOG3864 Uncharacterized conser 93.3 0.034 7.4E-07 46.3 1.0 66 345-414 101-166 (221)
77 smart00369 LRR_TYP Leucine-ric 92.0 0.14 3E-06 27.3 2.0 21 217-237 1-21 (26)
78 smart00370 LRR Leucine-rich re 92.0 0.14 3E-06 27.3 2.0 21 217-237 1-21 (26)
79 KOG0473 Leucine-rich repeat pr 89.5 0.011 2.3E-07 50.4 -5.8 85 144-231 39-124 (326)
80 smart00369 LRR_TYP Leucine-ric 88.9 0.44 9.5E-06 25.3 2.2 20 172-191 1-20 (26)
81 smart00370 LRR Leucine-rich re 88.9 0.44 9.5E-06 25.3 2.2 20 172-191 1-20 (26)
82 KOG0473 Leucine-rich repeat pr 86.3 0.025 5.3E-07 48.2 -5.6 83 170-252 39-122 (326)
83 smart00367 LRR_CC Leucine-rich 85.6 0.32 7E-06 25.9 0.5 16 398-413 1-16 (26)
84 KOG4308 LRR-containing protein 78.8 0.056 1.2E-06 52.6 -7.2 178 127-310 89-302 (478)
85 smart00364 LRR_BAC Leucine-ric 78.0 1.4 3E-05 23.5 1.1 18 218-235 2-19 (26)
86 KOG4308 LRR-containing protein 77.9 0.067 1.5E-06 52.0 -6.9 176 149-328 89-298 (478)
87 PF13516 LRR_6: Leucine Rich r 72.3 0.69 1.5E-05 24.0 -0.9 7 221-227 5-11 (24)
88 smart00365 LRR_SD22 Leucine-ri 70.1 3.6 7.7E-05 22.0 1.5 16 218-233 2-17 (26)
89 KOG3763 mRNA export factor TAP 65.6 3.6 7.7E-05 40.1 1.6 84 320-405 218-307 (585)
90 smart00368 LRR_RI Leucine rich 55.9 9.1 0.0002 20.7 1.5 14 173-186 2-15 (28)
91 KOG3763 mRNA export factor TAP 43.6 18 0.00038 35.5 2.3 83 297-380 217-309 (585)
92 PF15385 SARG: Specifically an 36.3 20 0.00043 35.0 1.5 15 12-27 7-21 (497)
93 PF14162 YozD: YozD-like prote 33.1 58 0.0013 20.5 2.6 33 43-78 18-50 (57)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-43 Score=351.24 Aligned_cols=373 Identities=26% Similarity=0.335 Sum_probs=271.0
Q ss_pred CchhhhhHHHhhhhccCchHHHHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhcccccc
Q 038338 1 MEKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLD 80 (421)
Q Consensus 1 ~~~~i~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 80 (421)
+++.|+++|++|||+||+ ++|.||+|||+|||||+|++++|+..|+||||+++....+.+++.+.+++.+|+.+++++.
T Consensus 393 ~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 393 MEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred hhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 467899999999999995 6999999999999999999999999999999999866777899999999999999999987
Q ss_pred cC---CCCceeccchHHHHHHHHhh-----cCCeEEecCCCCcccccccCccCCCeEEEcCCCCCccCCcccCCCCccEE
Q 038338 81 GD---AEDEVKMHDIIHVVAVSVAA-----ETRMFNIPNVADLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLF 152 (421)
Q Consensus 81 ~~---~~~~~~~hd~~~~l~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L 152 (421)
.+ ....|+|||++|+||.+++. .++.+ +.++......+....+...|++++.++.+..++....+++|++|
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTL 550 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceE
Confidence 64 45789999999999999999 56644 33333444456677788999999999999888888888999999
Q ss_pred EeeecCCCCcccChHHhccCCCccEEEccCC-CCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCC-
Q 038338 153 LLFRQGYGPVQISDLFFEGTEELKVLSLIGI-HFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSN- 229 (421)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~- 229 (421)
-+.+|..-...++..+|..++.|++||+++| .+.++|.+|+.+.+||||+++++.+.. |.+++++..|.+|++..+.
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 9999861136778888899999999999987 456799999999999999999999999 9999999999999999884
Q ss_pred CcccchhhcCCCCCCEEeccCCcCC-cccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC----EEE
Q 038338 230 IEQLPLEIGQLTGLRLLDLTNCWSL-QVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT----TLE 304 (421)
Q Consensus 230 l~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~----~L~ 304 (421)
+..+|.....|++|++|.+...... +......+..+++|+.+....... .....+..+..|. .+.
T Consensus 631 l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~----------~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 631 LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV----------LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh----------HhHhhhhhhHHHHHHhHhhh
Confidence 4455555566999999998764311 111111134444555444422211 1123333444444 233
Q ss_pred EEecCccccCCcc-cccCCceEEEEEcCCccchh----hhhhc-hhhhceeEEEcCCcccccccchhHHHHhhhcccEEE
Q 038338 305 IEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEI----DQLLV-KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLW 378 (421)
Q Consensus 305 l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 378 (421)
+.++.....+..+ ...+|+.|.+..+....... ..... .++++..+.+.+|. ....+.|... .|+|+.|.
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~---~~r~l~~~~f-~~~L~~l~ 776 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH---MLRDLTWLLF-APHLTSLS 776 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc---cccccchhhc-cCcccEEE
Confidence 3333333333333 55888888887665543111 11111 14556666555543 2333444433 38888888
Q ss_pred eccccCccccc
Q 038338 379 LVKLEGVQNVV 389 (421)
Q Consensus 379 l~~~~~~~~~~ 389 (421)
+..|...+.+.
T Consensus 777 l~~~~~~e~~i 787 (889)
T KOG4658|consen 777 LVSCRLLEDII 787 (889)
T ss_pred EecccccccCC
Confidence 88888776554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-32 Score=290.49 Aligned_cols=376 Identities=17% Similarity=0.239 Sum_probs=277.6
Q ss_pred chhhhhHHHhhhhccCchHHHHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccccccc
Q 038338 2 EKNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDG 81 (421)
Q Consensus 2 ~~~i~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 81 (421)
+.+|.++|++||+.|+.++.|.||+|+|+||.+..+ +.+..|++.+.+.. ...++.|+++++++..
T Consensus 419 ~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 419 DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR 484 (1153)
T ss_pred cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc
Confidence 467999999999999864589999999999988654 34677887765542 1137789999999765
Q ss_pred CCCCceeccchHHHHHHHHhhcCC-------eEEec--------CC---CCccc--------------ccccCccCCCeE
Q 038338 82 DAEDEVKMHDIIHVVAVSVAAETR-------MFNIP--------NV---ADLEK--------------KMEETIRKDPIA 129 (421)
Q Consensus 82 ~~~~~~~~hd~~~~l~~~~~~~e~-------~~~~~--------~~---~~~~~--------------~~~~~~~~~l~~ 129 (421)
+ +.++|||++++||+++++.+. +.... .. ..... ...+..+.+++.
T Consensus 485 ~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~ 562 (1153)
T PLN03210 485 E--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLF 562 (1153)
T ss_pred C--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccE
Confidence 3 469999999999999987651 11000 00 00000 012345667777
Q ss_pred EEcCCCCC-------ccCCccc-CC-CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338 130 ISLPQRNI-------QELPERL-QC-PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 200 (421)
Q Consensus 130 l~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 200 (421)
|.+..+.. ..+|... .+ ++|+.|.+.++.. ..+|..+ .+.+|+.|++.++.+..+|.++..+.+|++
T Consensus 563 L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~ 638 (1153)
T PLN03210 563 LKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRN 638 (1153)
T ss_pred EEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC--CccCCcEEECcCccccccccccccCCCCCE
Confidence 77754432 1233322 33 4688888888763 6677664 478999999999999889988999999999
Q ss_pred EEccccc-CCCcccccCcCCCCEEEeeCC-CCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338 201 LCLDWCQ-LEDVAAIGQLKKLEILNLADS-NIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 201 L~l~~~~-~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 278 (421)
|+++++. +...+.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+.|++++|..
T Consensus 639 L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 639 IDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred EECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCC
Confidence 9999876 444556889999999999998 57799999999999999999999999999875 3 789999999998753
Q ss_pred CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCC------ccchhhhhhchhhhceeEEE
Q 038338 279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDK------LEYEIDQLLVKSEALRLMML 352 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~l~~L~~L~l 352 (421)
....+ ...++|+.|+++++.+..+|..+.+++|+.|.+..+.. .....+.....+++|+.|++
T Consensus 717 L~~~p-----------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 717 LKSFP-----------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred ccccc-----------cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 32221 12368899999999999999887778888888853221 01011112234578999999
Q ss_pred cCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338 353 KGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG 417 (421)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 417 (421)
++|. ....+|.+++++ ++|+.|++++|..++.+|... ++++|+.|++++|.+++.+++
T Consensus 786 s~n~--~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 786 SDIP--SLVELPSSIQNL-HKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred CCCC--CccccChhhhCC-CCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCccccccc
Confidence 9987 455578888887 999999999999988888644 689999999999988887654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=9.2e-25 Score=231.50 Aligned_cols=269 Identities=20% Similarity=0.197 Sum_probs=134.9
Q ss_pred cCccCCCeEEEcCCCCC-ccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhccc
Q 038338 121 ETIRKDPIAISLPQRNI-QELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLI 196 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~~-~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~ 196 (421)
+..+++++.|++++|.+ +.+|... .+++|+.|++++|.+ .+.+|. ..+++|++|++++|.+.. +|..++.+.
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc-ccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence 34455666666666655 3454332 556666666666554 344443 235556666666655542 555556666
Q ss_pred CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338 197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273 (421)
Q Consensus 197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 273 (421)
+|++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++.+++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence 66666666655443 555566666666666665554 44555566666666666655444445544 455666666666
Q ss_pred ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc-ccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEE
Q 038338 274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-ILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMM 351 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 351 (421)
++|.+....+ ..++++++|++|++++|.+. .+|..+ .+++|+.|+++.+ ......|..+..+++|+.|+
T Consensus 244 ~~n~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 244 VYNNLTGPIP--------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred cCceeccccC--------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEE
Confidence 5555443322 34455555555555555442 333333 2345555555422 22223444444455555555
Q ss_pred EcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338 352 LKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC 409 (421)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c 409 (421)
+++|.+ ....|.++..+ ++|+.|++.+|.....+|..+. .+++|+.|++++|
T Consensus 315 l~~n~~--~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~---~~~~L~~L~Ls~n 366 (968)
T PLN00113 315 LFSNNF--TGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLG---KHNNLTVLDLSTN 366 (968)
T ss_pred CCCCcc--CCcCChhHhcC-CCCCEEECcCCCCcCcCChHHh---CCCCCcEEECCCC
Confidence 555442 12233334443 4455555544444444443333 4444444444443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3.1e-24 Score=227.50 Aligned_cols=229 Identities=24% Similarity=0.257 Sum_probs=113.4
Q ss_pred ccCCCeEEEcCCCCC-ccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCcE
Q 038338 123 IRKDPIAISLPQRNI-QELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQT 200 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 200 (421)
.++++++|++++|.+ +.+|. ..+++|++|++++|.+ .+.+|..+ +.+++|++|++++|.+.. +|..++.+.+|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~-~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNML-SGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcc-cccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 455666666666655 23332 3455666666666654 34444443 555666666666655542 5555556666666
Q ss_pred EEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338 201 LCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF 277 (421)
Q Consensus 201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 277 (421)
|++++|.+.. |..++++++|++|++++|++. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCe
Confidence 6666555543 555555556666666555554 45555555555555555555444444443 4555555555555554
Q ss_pred CCCccccC------------C----CCcChhhhcCCCCCCEEEEEecCcc-ccCCcc-cccCCceEEEEEcCCccchhhh
Q 038338 278 SGWEKVEG------------G----SNASLVELKRLTKLTTLEIEVRDAE-ILLPDF-VSVELQRYRIRIGDKLEYEIDQ 339 (421)
Q Consensus 278 ~~~~~~~~------------~----~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~ 339 (421)
+....+.. . ....+..+.++++|+.|++.+|.+. .+|..+ .+++|+.|++..+ ......|.
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~ 350 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN-KFSGEIPK 350 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC-CCcCcCCh
Confidence 43222200 0 0011133444445555555444442 233322 2345555555422 22223444
Q ss_pred hhchhhhceeEEEcCCc
Q 038338 340 LLVKSEALRLMMLKGLE 356 (421)
Q Consensus 340 ~~~~l~~L~~L~l~~~~ 356 (421)
.++.+++|+.|++++|.
T Consensus 351 ~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNN 367 (968)
T ss_pred HHhCCCCCcEEECCCCe
Confidence 45555555555555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.2e-24 Score=199.49 Aligned_cols=279 Identities=19% Similarity=0.203 Sum_probs=195.9
Q ss_pred cccCccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccC
Q 038338 119 MEETIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 197 (421)
Q Consensus 119 ~~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 197 (421)
+.+-.+..++.+++++|.+..+|... ..+++-+|++++|.+ ..+|..+|-+++.|-+|||++|.+..+|+.+..+.+
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I--etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI--ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc--ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 35677889999999999999998766 889999999999995 889999999999999999999999999999999999
Q ss_pred CcEEEcccccCCC--cccccCcCCCCEEEeeCCCC--cccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338 198 LQTLCLDWCQLED--VAAIGQLKKLEILNLADSNI--EQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273 (421)
Q Consensus 198 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l--~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 273 (421)
|++|++++|.+.. ...+-.+++|+.|.+++++- ..+|..+..+.+|+.++++.| .+..+|.. +-++++|+.|++
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec-ly~l~~LrrLNL 252 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC-LYKLRNLRRLNL 252 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHH-Hhhhhhhheecc
Confidence 9999999998766 66777788888888888753 378888888888888888884 56667765 678888888888
Q ss_pred ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEE
Q 038338 274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMML 352 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 352 (421)
++|.++..... .+.-.+|++|+++.|.+..+|..+ .++.|++|.+..+...-..+|+.++++.+|+.+..
T Consensus 253 S~N~iteL~~~---------~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 253 SGNKITELNMT---------EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred CcCceeeeecc---------HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 88877654321 222345556666666666666555 33555555554222222234555555555665555
Q ss_pred cCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeeccc
Q 038338 353 KGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGS 418 (421)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~ 418 (421)
++|. ..-+|+++..+ ++|+.|.+..|.. -.+|..+. -+|-|+.|++..+|+|..=+.+
T Consensus 324 anN~---LElVPEglcRC-~kL~kL~L~~NrL-iTLPeaIH---lL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 324 ANNK---LELVPEGLCRC-VKLQKLKLDHNRL-ITLPEAIH---LLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hccc---cccCchhhhhh-HHHHHhcccccce-eechhhhh---hcCCcceeeccCCcCccCCCCc
Confidence 5543 22245555554 5555555554443 23444333 4555566666665555544433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=4.5e-24 Score=198.57 Aligned_cols=277 Identities=18% Similarity=0.200 Sum_probs=168.7
Q ss_pred ccCccCCCeEEEcCCCCCccCC-cccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCC
Q 038338 120 EETIRKDPIAISLPQRNIQELP-ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL 198 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 198 (421)
....+.+++||++.+|.+.++. +...+|.||++.+..|......+|.++| +++.|.+|||++|++.+.|..+..-+++
T Consensus 50 EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNS 128 (1255)
T ss_pred HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCc
Confidence 3444555555555555553333 2225555555555555442334455543 3555555555555555555555555555
Q ss_pred cEEEcccccCCC-cc-cccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcC-----------------------
Q 038338 199 QTLCLDWCQLED-VA-AIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWS----------------------- 253 (421)
Q Consensus 199 ~~L~l~~~~~~~-~~-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~----------------------- 253 (421)
-+|++++|.|.. |. -+.+++.|-.||+++|++..+|+.+..+..|++|.+++|..
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 555555555555 32 23455555555555555555555555555555555555322
Q ss_pred --CcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccc-cCCceEEEEEc
Q 038338 254 --LQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVS-VELQRYRIRIG 330 (421)
Q Consensus 254 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~ 330 (421)
+..+|.. +..+.+|..++++.|.+.. +++.+-++.+|+.|++++|.++++...... .+|+.|+++ .
T Consensus 209 RTl~N~Pts-ld~l~NL~dvDlS~N~Lp~---------vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlS-r 277 (1255)
T KOG0444|consen 209 RTLDNIPTS-LDDLHNLRDVDLSENNLPI---------VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLS-R 277 (1255)
T ss_pred chhhcCCCc-hhhhhhhhhccccccCCCc---------chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccc-c
Confidence 1223333 4444455555555544332 235566777777888887777766555433 777777776 3
Q ss_pred CCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 331 DKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 331 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
+.+. .+|..+.++++|+.|.+.+|++ +...+|++|+.+ ..|+.+...+|. ++-+|..+. .|++|+.|.++.+.
T Consensus 278 NQLt-~LP~avcKL~kL~kLy~n~NkL-~FeGiPSGIGKL-~~Levf~aanN~-LElVPEglc---RC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCKLTKLTKLYANNNKL-TFEGIPSGIGKL-IQLEVFHAANNK-LELVPEGLC---RCVKLQKLKLDHNR 350 (1255)
T ss_pred chhc-cchHHHhhhHHHHHHHhccCcc-cccCCccchhhh-hhhHHHHhhccc-cccCchhhh---hhHHHHHhcccccc
Confidence 3444 5688899999999999999985 566689999998 899999888765 577888888 99999999998774
Q ss_pred ceeeec
Q 038338 411 EIVHIV 416 (421)
Q Consensus 411 ~L~~l~ 416 (421)
|..++
T Consensus 351 -LiTLP 355 (1255)
T KOG0444|consen 351 -LITLP 355 (1255)
T ss_pred -eeech
Confidence 55444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.8e-22 Score=182.69 Aligned_cols=279 Identities=16% Similarity=0.169 Sum_probs=129.8
Q ss_pred CccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCc
Q 038338 122 TIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQ 199 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~ 199 (421)
..+++++.+.+..|.+..+|... ...+++.|++.+|.+ ..+...-.+.++.||.|||+.|.+..+|. ++..-.+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 45556666666666655555555 334455555555553 33333333445555555555555554432 233344555
Q ss_pred EEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcc--------------------
Q 038338 200 TLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQV-------------------- 256 (421)
Q Consensus 200 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~-------------------- 256 (421)
+|++++|+|+. ...|.++.+|-.|.+++|+++.+|.. |.++++|+.|++..| .+..
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc
Confidence 55555555554 34455555555555555555555443 223555555555442 2222
Q ss_pred ----cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc--ccccCCceEEEEEc
Q 038338 257 ----IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD--FVSVELQRYRIRIG 330 (421)
Q Consensus 257 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~ 330 (421)
+..+.|-.+.++++|++..|.+..... .++-+++.|+.|+++.|.+..+-.. -..++|+.|+++ .
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs-~ 326 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNE--------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS-S 326 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhc--------ccccccchhhhhccchhhhheeecchhhhcccceeEecc-c
Confidence 122222233333344444433332222 3445556666666666665433222 233666666665 2
Q ss_pred CCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 331 DKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 331 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
+.+...-+.++..+..|+.|.+++|.+... -...+..+ ++|+.|++++|..--.+-..-..-.++++|++|.+.|+
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l--~e~af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN- 402 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHL--AEGAFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN- 402 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHH--HhhHHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-
Confidence 333323344555556666666666543211 11123333 56666666655543211110000124556666665555
Q ss_pred ceeeec
Q 038338 411 EIVHIV 416 (421)
Q Consensus 411 ~L~~l~ 416 (421)
+|++|.
T Consensus 403 qlk~I~ 408 (873)
T KOG4194|consen 403 QLKSIP 408 (873)
T ss_pred eeeecc
Confidence 455544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.2e-22 Score=182.95 Aligned_cols=270 Identities=19% Similarity=0.193 Sum_probs=163.9
Q ss_pred CCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEE
Q 038338 125 KDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTL 201 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 201 (421)
+.+|.++++.|.+..++... .-.+++.|++++|.+ +.+....|..+.+|.+|.|++|.++.+|. .+.++++|+.|
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc--cccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 34444444444444443222 334556666666653 44444445666666666777776666654 34557777777
Q ss_pred EcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338 202 CLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 202 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 278 (421)
++..|.++. --.|..+++|+.|.+.+|++..+.++ |..|.++++|+++.| .+..+..+++-.+++|+.|++++|.+
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhh
Confidence 777776655 35566666677777777777666555 556778888888774 55666666667788888888888877
Q ss_pred CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc
Q 038338 279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE 356 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 356 (421)
..+.. ......++|+.|+++.|.+..+++.- .+..|+.|.++. +..+......+..+.+|+.|++++|.
T Consensus 306 ~rih~--------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 306 QRIHI--------DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred heeec--------chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 76655 45666677888888888777766553 447777777763 33332333446666777777777776
Q ss_pred ccccccch-hHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 357 KVSILQEN-DGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 357 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
+...+..- ..+..+ ++|+.|.+.+|.. +.++... ..+|++|+.|++.+++
T Consensus 377 ls~~IEDaa~~f~gl-~~LrkL~l~gNql-k~I~krA--fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGL-PSLRKLRLTGNQL-KSIPKRA--FSGLEALEHLDLGDNA 427 (873)
T ss_pred EEEEEecchhhhccc-hhhhheeecCcee-eecchhh--hccCcccceecCCCCc
Confidence 43222221 123333 7777777776653 4444211 2367777777776664
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=7e-20 Score=195.08 Aligned_cols=273 Identities=19% Similarity=0.193 Sum_probs=194.1
Q ss_pred cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CCCCChhhhcccCCcEEE
Q 038338 124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FSSLPSSLGRLINLQTLC 202 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~ 202 (421)
..+++.|.+.++.+..+|......+|+.|++.++.. ..++..+ ..+++|++|+++++. +..+|. ++.+++|++|+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l--~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL--EKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc--ccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 356888999888888888877888999999988875 5565554 678889999998774 455664 77888899999
Q ss_pred ccccc-CCC-cccccCcCCCCEEEeeCC-CCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338 203 LDWCQ-LED-VAAIGQLKKLEILNLADS-NIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG 279 (421)
Q Consensus 203 l~~~~-~~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 279 (421)
+++|. +.. |..++++++|+.|++++| .+..+|..+ ++++|++|++++|..+..+|. ...+|++|++++|.+.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE 738 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence 98876 444 888888999999999887 677888765 788888888888876666553 1345566666555443
Q ss_pred CccccC---------------------------------------------CCCcChhhhcCCCCCCEEEEEecC-cccc
Q 038338 280 WEKVEG---------------------------------------------GSNASLVELKRLTKLTTLEIEVRD-AEIL 313 (421)
Q Consensus 280 ~~~~~~---------------------------------------------~~~~~~~~l~~l~~L~~L~l~~~~-~~~~ 313 (421)
..+... .....+.+++++++|+.|++++|. ++.+
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 322110 011133455666667777776654 4566
Q ss_pred CCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccccccc
Q 038338 314 LPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELD 393 (421)
Q Consensus 314 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 393 (421)
|....+++|+.|++++|.... .+|. ..++|+.|++++|.+ ..+|.++..+ ++|++|++.+|+.++.++....
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~-~~p~---~~~nL~~L~Ls~n~i---~~iP~si~~l-~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLR-TFPD---ISTNISDLNLSRTGI---EEVPWWIEKF-SNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred CCCCCccccCEEECCCCCccc-cccc---cccccCEeECCCCCC---ccChHHHhcC-CCCCEEECCCCCCcCccCcccc
Confidence 665555667777766554433 1221 235677777777553 3467788887 9999999999999999887666
Q ss_pred ccCCCCCccEEEEeecCceeeec
Q 038338 394 DGEGFPRLKHLHVESCYEIVHIV 416 (421)
Q Consensus 394 ~~~~~~~L~~L~i~~c~~L~~l~ 416 (421)
.+++|+.+++.+|++|+.+.
T Consensus 891 ---~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 891 ---KLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ---cccCCCeeecCCCccccccc
Confidence 89999999999999998653
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=1.2e-20 Score=167.31 Aligned_cols=278 Identities=18% Similarity=0.196 Sum_probs=179.9
Q ss_pred ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338 120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 199 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 199 (421)
..+.+.++..|+++.|.+..+|++..|..|..|.+..|.+ ..+|....+++.+|.+||+.+|.+++.|..++.+.+|.
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH--HhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 3445555555666666666666555666666666666653 55666666677777777777777777777777777777
Q ss_pred EEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhh-----------------------------------------
Q 038338 200 TLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEI----------------------------------------- 237 (421)
Q Consensus 200 ~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~----------------------------------------- 237 (421)
+||+++|.++. |.+++++ +|+.|.+.+|.++.+-.++
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 77777777777 7777777 7777777776654322221
Q ss_pred -cCCCCCCEEeccCCcCCcccchhhhcCCC--CCcEEEcccCCCCCccccC---------------CCCcChhhhcCCCC
Q 038338 238 -GQLTGLRLLDLTNCWSLQVIAPNVISKLS--RLEELYMDNSFSGWEKVEG---------------GSNASLVELKRLTK 299 (421)
Q Consensus 238 -~~l~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~---------------~~~~~~~~l~~l~~ 299 (421)
..+.+.+.|+++. ..+..+|.+.|..-+ -....+++.|.+...+... ........+..+++
T Consensus 358 ~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 358 IYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred hhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 1122333444433 333444444332221 1333444444443333221 12233466777888
Q ss_pred CCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEE
Q 038338 300 LTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLW 378 (421)
Q Consensus 300 L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 378 (421)
|..|++++|-+..+|..+ ....|+.++++.+ .+. ..|..+-.+..|+.+-.++|++. .--+++++++ .+|.+|+
T Consensus 437 Lt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr-~lP~~~y~lq~lEtllas~nqi~--~vd~~~l~nm-~nL~tLD 511 (565)
T KOG0472|consen 437 LTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFR-MLPECLYELQTLETLLASNNQIG--SVDPSGLKNM-RNLTTLD 511 (565)
T ss_pred ceeeecccchhhhcchhhhhhhhhheeccccc-ccc-cchHHHhhHHHHHHHHhcccccc--ccChHHhhhh-hhcceec
Confidence 889999988888888887 4477999998744 343 56777777777888877777632 2235578888 9999999
Q ss_pred eccccCcccccccccccCCCCCccEEEEeecC
Q 038338 379 LVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 379 l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
+.+|.. ..+|..++ ++.+|+.|++.|+|
T Consensus 512 L~nNdl-q~IPp~Lg---nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 512 LQNNDL-QQIPPILG---NMTNLRHLELDGNP 539 (565)
T ss_pred cCCCch-hhCChhhc---cccceeEEEecCCc
Confidence 998775 66777777 99999999999997
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1.7e-21 Score=172.58 Aligned_cols=264 Identities=23% Similarity=0.261 Sum_probs=223.5
Q ss_pred CCeEEEcCCCCCccCCcc-cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338 126 DPIAISLPQRNIQELPER-LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 204 (421)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 204 (421)
.++.+.+++|.+..+... .++..+++|.+..|.. ..+|..+ +.+..++.++.+.+.+..+|..++.+..|+.++.+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l--~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL--SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchh--hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 567788888888666544 4899999999999985 7788876 78999999999999999999999999999999999
Q ss_pred cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338 205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV 283 (421)
Q Consensus 205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 283 (421)
+|.+.. +++++.+..|..|+..+|++..+|.+++++.+|..+++.++ ....+|++.+ +++.|++|+...|.++..+
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i-~m~~L~~ld~~~N~L~tlP- 199 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHI-AMKRLKHLDCNSNLLETLP- 199 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHH-HHHHHHhcccchhhhhcCC-
Confidence 999888 99999999999999999999999999999999999999995 5667777755 4999999999888877665
Q ss_pred cCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhc-hhhhceeEEEcCCccccccc
Q 038338 284 EGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLV-KSEALRLMMLKGLEKVSILQ 362 (421)
Q Consensus 284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~ 362 (421)
.+++.+.+|..|++..|++..+|+..++..|.+|++. .+... .+|.... +++++..|++.+|++ ..
T Consensus 200 --------~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g-~N~i~-~lpae~~~~L~~l~vLDLRdNkl---ke 266 (565)
T KOG0472|consen 200 --------PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG-ENQIE-MLPAEHLKHLNSLLVLDLRDNKL---KE 266 (565)
T ss_pred --------hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc-ccHHH-hhHHHHhcccccceeeecccccc---cc
Confidence 5689999999999999999999977788999999985 33333 4555554 899999999999773 45
Q ss_pred chhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338 363 ENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI 415 (421)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l 415 (421)
.|+.+.-+ .+|++|++++|.. ..+|..++ ++ .|+.|.+.|+| |+.|
T Consensus 267 ~Pde~clL-rsL~rLDlSNN~i-s~Lp~sLg---nl-hL~~L~leGNP-lrTi 312 (565)
T KOG0472|consen 267 VPDEICLL-RSLERLDLSNNDI-SSLPYSLG---NL-HLKFLALEGNP-LRTI 312 (565)
T ss_pred CchHHHHh-hhhhhhcccCCcc-ccCCcccc---cc-eeeehhhcCCc-hHHH
Confidence 78888877 8999999999875 66777777 88 99999999997 4443
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-19 Score=143.07 Aligned_cols=167 Identities=25% Similarity=0.371 Sum_probs=138.2
Q ss_pred CccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-ccccc
Q 038338 137 IQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIG 215 (421)
Q Consensus 137 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~ 215 (421)
+..++...++++++.|.+++|.. ..+|..+ ..+++|++|++.+|+++++|.+++.++.|+.|+++.|++.. |.+++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl--~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKL--TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccCce--eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 35566667888888888888875 5566665 67899999999999999999999999999999999888877 89999
Q ss_pred CcCCCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhh
Q 038338 216 QLKKLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVE 293 (421)
Q Consensus 216 ~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 293 (421)
.++.|+.||+.+|++. .+|..+..++.|+.|++++| -...+|++ ++++++||.|.+..|.+...+ .+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~lp---------ke 168 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLSLP---------KE 168 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhhCc---------HH
Confidence 9999999999998877 78888888899999999884 56778887 789999999998887655433 67
Q ss_pred hcCCCCCCEEEEEecCccccCCcc
Q 038338 294 LKRLTKLTTLEIEVRDAEILLPDF 317 (421)
Q Consensus 294 l~~l~~L~~L~l~~~~~~~~~~~~ 317 (421)
++.++.|++|+|.+|.+..+|+.+
T Consensus 169 ig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHhcccceeeecChhh
Confidence 888899999999999888888764
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=9e-19 Score=137.97 Aligned_cols=163 Identities=21% Similarity=0.322 Sum_probs=147.4
Q ss_pred cccccCccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcc
Q 038338 117 KKMEETIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195 (421)
Q Consensus 117 ~~~~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l 195 (421)
..+..-.++++++|.+++|.+..+|..+ .+.+|++|++++|.+ ..+|..+ +.+++||.|++..|.+..+|.+++.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCCC
Confidence 3456667889999999999998887666 999999999999995 8889887 88999999999999999999999999
Q ss_pred cCCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEE
Q 038338 196 INLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELY 272 (421)
Q Consensus 196 ~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 272 (421)
+.|++||+.+|.+.. |..+.-++.|+.|+++.|.+..+|++++++++|+.|.+.+| .+-++|.+ ++.++.|++|.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHh
Confidence 999999999999776 88999999999999999999999999999999999999995 55678988 89999999999
Q ss_pred cccCCCCCcccc
Q 038338 273 MDNSFSGWEKVE 284 (421)
Q Consensus 273 l~~~~~~~~~~~ 284 (421)
+.+|.++..+++
T Consensus 180 iqgnrl~vlppe 191 (264)
T KOG0617|consen 180 IQGNRLTVLPPE 191 (264)
T ss_pred cccceeeecChh
Confidence 999998877663
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=5.5e-16 Score=155.54 Aligned_cols=247 Identities=15% Similarity=0.163 Sum_probs=173.8
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 204 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 204 (421)
.+...|.+.+..+..+|..+ .++++.|++++|.+ ..+|..+ .++|++|++++|.++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--tsLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNEL--KSLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--CcCChhh---ccCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 45677888888887777643 25788999998875 5677765 3588999999998888887654 478999999
Q ss_pred cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338 205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV 283 (421)
Q Consensus 205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 283 (421)
+|.+.. |..+. .+|+.|++++|++..+|..+. ++|++|++++| .+..+|.. + .++|+.|++++|.+...+.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccccCCc
Confidence 988887 66554 478999999888888887654 58999999886 45566653 2 2468888888887765432
Q ss_pred cCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccc
Q 038338 284 EGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE 363 (421)
Q Consensus 284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 363 (421)
.+ .++|+.|.+++|.+..+|..+. ++|+.|+++.+. +. .+|..+ .++|+.|++++|.+. .+
T Consensus 322 ---------~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~-L~-~LP~~l--p~~L~~LdLs~N~Lt---~L 382 (754)
T PRK15370 322 ---------TL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQ-IT-VLPETL--PPTITTLDVSRNALT---NL 382 (754)
T ss_pred ---------cc--cccceeccccCCccccCChhhc-CcccEEECCCCC-CC-cCChhh--cCCcCEEECCCCcCC---CC
Confidence 11 2578888888888887776543 688888887443 33 344433 367888888887743 34
Q ss_pred hhHHHHhhhcccEEEeccccCcccccccccc-cCCCCCccEEEEeecC
Q 038338 364 NDGTKMLLQRTEDLWLVKLEGVQNVVHELDD-GEGFPRLKHLHVESCY 410 (421)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~i~~c~ 410 (421)
|..+. +.|+.|++++|.. ..+|..+.. ...+|++..|++.++|
T Consensus 383 P~~l~---~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 383 PENLP---AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CHhHH---HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 54433 4688888888765 355543320 1245788888888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=9.7e-15 Score=145.87 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=86.2
Q ss_pred cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEc
Q 038338 124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL 203 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 203 (421)
..+++.|.+.+|.+..+|.. .++|+.|++++|.+ ..+|.. .++|+.|++++|.++.+|... ..|+.|++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L--tsLP~l----p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL--TSLPVL----PPGLLELSIFSNPLTHLPALP---SGLCKLWI 289 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc--CcccCc----ccccceeeccCCchhhhhhch---hhcCEEEC
Confidence 34778888888888777753 57888888888875 445532 456777777777776665522 45667777
Q ss_pred ccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338 204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281 (421)
Q Consensus 204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (421)
++|.++. |.. .++|+.|++++|++..+|... .+|+.|++++| .+..+|. + ..+|+.|++++|.+...
T Consensus 290 s~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 290 FGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQLASL 357 (788)
T ss_pred cCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccC-ccccccc--c--ccccceEecCCCccCCC
Confidence 7777666 432 356777777777777666422 34555666664 3344443 1 23667777777666543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=5.5e-17 Score=157.99 Aligned_cols=244 Identities=20% Similarity=0.221 Sum_probs=153.7
Q ss_pred CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEE
Q 038338 145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEIL 223 (421)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L 223 (421)
.-++++.|....|.. . ..... ....+|++++++.+.+..+|.+++.+.+|+.++..+|.+.. |..+...++|+.|
T Consensus 217 ~g~~l~~L~a~~n~l-~-~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPL-T-TLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSL 292 (1081)
T ss_pred cCcchheeeeccCcc-e-eeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence 335555666655554 2 11111 12455666666666666666666666666666666666655 6666666666666
Q ss_pred EeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCC-------------------------CCCcEEEcccCCC
Q 038338 224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKL-------------------------SRLEELYMDNSFS 278 (421)
Q Consensus 224 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l-------------------------~~L~~L~l~~~~~ 278 (421)
.+..|.+..+|+....++.|++|++..| .+..+|...+..+ +.|+.|.+.+|.+
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 6666666666666666666666666553 4444444333322 2344444444444
Q ss_pred CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc
Q 038338 279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE 356 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 356 (421)
+.. .+..+-+..+|+.|++++|.+..+|... .+..|+.|+++ ++.+. .+|..+..++.|+.|...+|.
T Consensus 372 td~--------c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS-GNkL~-~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 372 TDS--------CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS-GNKLT-TLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred ccc--------chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc-cchhh-hhhHHHHhhhhhHHHhhcCCc
Confidence 433 3466888889999999999998888875 44888888887 44555 567888889999999888866
Q ss_pred ccccccchhHHHHhhhcccEEEeccccCcccc-cccccccCCCCCccEEEEeecCce
Q 038338 357 KVSILQENDGTKMLLQRTEDLWLVKLEGVQNV-VHELDDGEGFPRLKHLHVESCYEI 412 (421)
Q Consensus 357 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~i~~c~~L 412 (421)
+ ...| .+..+ +.|+.++++.|..-... +... .-|+||+|+++|++.+
T Consensus 442 l---~~fP-e~~~l-~qL~~lDlS~N~L~~~~l~~~~----p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 442 L---LSFP-ELAQL-PQLKVLDLSCNNLSEVTLPEAL----PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred e---eech-hhhhc-CcceEEecccchhhhhhhhhhC----CCcccceeeccCCccc
Confidence 3 2234 56666 89999999877654332 2222 2279999999998853
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=6.5e-15 Score=147.86 Aligned_cols=228 Identities=17% Similarity=0.215 Sum_probs=174.7
Q ss_pred ccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338 123 IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 202 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 202 (421)
..++++.|++++|.+..+|... .++|+.|++++|.+ ..+|..+ ..+|+.|++++|.+..+|..+. .+|++|+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITELPERLP--SALQSLD 268 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence 3568999999999998888654 36999999999986 5677755 3579999999999999998765 5899999
Q ss_pred cccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338 203 LDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281 (421)
Q Consensus 203 l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (421)
+++|.+.. |..+. .+|+.|++++|+++.+|..+. ++|++|++++| .+..+|.. + .++|+.|++++|.++..
T Consensus 269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAGENALTSL 340 (754)
T ss_pred CcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceeccccCCccccC
Confidence 99999988 76654 589999999999999887554 57999999986 44566653 2 36899999999887654
Q ss_pred cccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccc
Q 038338 282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL 361 (421)
Q Consensus 282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 361 (421)
+. .+. ++|+.|++++|.+..+|..+ .++|+.|++..+ .+. .+|..+. ++|+.|++++|.+.
T Consensus 341 P~---------~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N-~Lt-~LP~~l~--~sL~~LdLs~N~L~--- 401 (754)
T PRK15370 341 PA---------SLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRN-ALT-NLPENLP--AALQIMQASRNNLV--- 401 (754)
T ss_pred Ch---------hhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCC-cCC-CCCHhHH--HHHHHHhhccCCcc---
Confidence 32 232 68999999999998888754 378999999754 333 3455443 47999999998853
Q ss_pred cchhHHHHh---hhcccEEEeccccCc
Q 038338 362 QENDGTKML---LQRTEDLWLVKLEGV 385 (421)
Q Consensus 362 ~~~~~~~~~---~~~L~~L~l~~~~~~ 385 (421)
.+|..+..+ .+.+..|++.+|+..
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 344444332 277899999998863
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=9.6e-14 Score=138.83 Aligned_cols=223 Identities=18% Similarity=0.144 Sum_probs=170.7
Q ss_pred cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEc
Q 038338 124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL 203 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 203 (421)
+++++.|++++|.+..+|.. .++|+.|++++|.+ ..+|. ..+.|+.|++++|.++.+|.. .++|++|++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L--~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPL--THLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCCccCcccCc--ccccceeeccCCch--hhhhh----chhhcCEEECcCCcccccccc---ccccceeEC
Confidence 57899999999999888753 57899999999985 45554 246789999999999988863 468999999
Q ss_pred ccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338 204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK 282 (421)
Q Consensus 204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 282 (421)
++|.+.. |... .+|+.|++++|++..+|.. ..+|++|++++| .+..+|.. ..+|+.|++++|.+...+
T Consensus 310 S~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l----p~~L~~L~Ls~N~L~~LP 378 (788)
T PRK15387 310 SDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDN-QLASLPTL----PSELYKLWAYNNRLTSLP 378 (788)
T ss_pred CCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCC-ccCCCCCC----CcccceehhhccccccCc
Confidence 9999888 5432 4578899999999988852 358999999995 55667752 357888899988876543
Q ss_pred ccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccccc
Q 038338 283 VEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQ 362 (421)
Q Consensus 283 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 362 (421)
. + ..+|+.|++++|.+..+|.. .++|+.|+++.+ .+. .+|.. +.+|+.|++++|.+. .
T Consensus 379 ~----------l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N-~Ls-sIP~l---~~~L~~L~Ls~NqLt---~ 436 (788)
T PRK15387 379 A----------L--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGN-RLT-SLPML---PSGLLSLSVYRNQLT---R 436 (788)
T ss_pred c----------c--ccccceEEecCCcccCCCCc--ccCCCEEEccCC-cCC-CCCcc---hhhhhhhhhccCccc---c
Confidence 2 1 25789999999999888864 368999999754 344 34432 357888999998853 5
Q ss_pred chhHHHHhhhcccEEEeccccCccccccc
Q 038338 363 ENDGTKMLLQRTEDLWLVKLEGVQNVVHE 391 (421)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 391 (421)
+|..+.++ ++|+.|++++|+.....+..
T Consensus 437 LP~sl~~L-~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 437 LPESLIHL-SSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred cChHHhhc-cCCCeEECCCCCCCchHHHH
Confidence 77888887 99999999999887655443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=7.5e-15 Score=136.20 Aligned_cols=40 Identities=10% Similarity=-0.177 Sum_probs=18.0
Q ss_pred hhceeEEEcCCccc--ccccchhHHHHhhhcccEEEeccccCc
Q 038338 345 EALRLMMLKGLEKV--SILQENDGTKMLLQRTEDLWLVKLEGV 385 (421)
Q Consensus 345 ~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (421)
+.|++|++++|.+. ........+... ++|+++++++|...
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCc
Confidence 45566666555532 111112222222 45566666555544
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=1.9e-15 Score=147.50 Aligned_cols=267 Identities=20% Similarity=0.182 Sum_probs=152.0
Q ss_pred CeEEEcCCCCCccCC--cccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338 127 PIAISLPQRNIQELP--ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 204 (421)
Q Consensus 127 l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 204 (421)
+++|++..|.+-..| ...+.-+|++|++++|.. ..+|..+ ..+.+|+.|.+++|.+...|.+.+.+.+|++|++.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc--ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 445555555543322 111333466666666653 4445443 44566666666666666666666666666666666
Q ss_pred cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchh---------------hhcCCCCC
Q 038338 205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPN---------------VISKLSRL 268 (421)
Q Consensus 205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~---------------~l~~l~~L 268 (421)
.|.... |.++..+.+|++|+++.|.+..+|.-+..++.+..+..++|..+..++.. +......|
T Consensus 100 ~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l 179 (1081)
T KOG0618|consen 100 NNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL 179 (1081)
T ss_pred cchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh
Confidence 666655 66666666666666666666666666666666666665554222222211 01111112
Q ss_pred cE-EEcccCCCCCccccCCCCcChhhhcCCCC--------------------CCEEEEEecCccccCCcccccCCceEEE
Q 038338 269 EE-LYMDNSFSGWEKVEGGSNASLVELKRLTK--------------------LTTLEIEVRDAEILLPDFVSVELQRYRI 327 (421)
Q Consensus 269 ~~-L~l~~~~~~~~~~~~~~~~~~~~l~~l~~--------------------L~~L~l~~~~~~~~~~~~~~~~L~~L~l 327 (421)
+. |+++.|.+. . ..+..+.+ |+.|....|.+...-......+|+.+++
T Consensus 180 ~~~ldLr~N~~~-~----------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 180 THQLDLRYNEME-V----------LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDI 248 (1081)
T ss_pred heeeecccchhh-h----------hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeec
Confidence 22 444444333 0 12222323 3333333333332222223467777777
Q ss_pred EEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEe
Q 038338 328 RIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVE 407 (421)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~ 407 (421)
+.. .+. .+|.+++.|.+|+.+.+.+|.+ ...|..+... .+|+.|.+..|. ++.+|.... ++.+|+.|++.
T Consensus 249 s~n-~l~-~lp~wi~~~~nle~l~~n~N~l---~~lp~ri~~~-~~L~~l~~~~ne-l~yip~~le---~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 249 SHN-NLS-NLPEWIGACANLEALNANHNRL---VALPLRISRI-TSLVSLSAAYNE-LEYIPPFLE---GLKSLRTLDLQ 318 (1081)
T ss_pred chh-hhh-cchHHHHhcccceEecccchhH---HhhHHHHhhh-hhHHHHHhhhhh-hhhCCCccc---ccceeeeeeeh
Confidence 633 233 4578888889999998888774 4466666666 788888888776 466666554 89999999998
Q ss_pred ecCceeeeccc
Q 038338 408 SCYEIVHIVGS 418 (421)
Q Consensus 408 ~c~~L~~l~~~ 418 (421)
.+ +|.++++.
T Consensus 319 ~N-~L~~lp~~ 328 (1081)
T KOG0618|consen 319 SN-NLPSLPDN 328 (1081)
T ss_pred hc-cccccchH
Confidence 88 67777654
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=2.6e-14 Score=132.64 Aligned_cols=232 Identities=18% Similarity=0.134 Sum_probs=137.1
Q ss_pred hccCCCccEEEccCCCCCC-----CChhhhcccCCcEEEcccccCCC--------cccccCcCCCCEEEeeCCCCc-ccc
Q 038338 169 FEGTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED--------VAAIGQLKKLEILNLADSNIE-QLP 234 (421)
Q Consensus 169 ~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--------~~~~~~l~~L~~L~l~~~~l~-~lp 234 (421)
+..+..|++|+++++.++. ++..+...+.+++++++++.+.. +..+.++++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 4556667777777766532 44445556667777776665541 234556667777777777665 333
Q ss_pred hhhcCCCC---CCEEeccCCcCCcc----cchhhhcCC-CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEE
Q 038338 235 LEIGQLTG---LRLLDLTNCWSLQV----IAPNVISKL-SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIE 306 (421)
Q Consensus 235 ~~~~~l~~---L~~L~l~~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 306 (421)
..+..+.+ |++|++++|..... +.. .+..+ ++|++|++++|.++.... ......+..+++|++|+++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASC----EALAKALRANRDLKELNLA 173 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHH----HHHHHHHHhCCCcCEEECc
Confidence 44444444 77777777643311 111 24455 677777777776653211 1223456666777777777
Q ss_pred ecCccc-----cCCcc-cccCCceEEEEEcCCcc---chhhhhhchhhhceeEEEcCCcccccccchhHHHHhh----hc
Q 038338 307 VRDAEI-----LLPDF-VSVELQRYRIRIGDKLE---YEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLL----QR 373 (421)
Q Consensus 307 ~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~----~~ 373 (421)
+|.++. ++..+ ..++|+.|+++.+.... ..+...+..+++|+.|++++|.+.. .....+...+ +.
T Consensus 174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--AGAAALASALLSPNIS 251 (319)
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--HHHHHHHHHHhccCCC
Confidence 777642 11111 23578888776443221 1234556778999999999987432 1222233322 69
Q ss_pred ccEEEeccccCcc----cccccccccCCCCCccEEEEeecC
Q 038338 374 TEDLWLVKLEGVQ----NVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 374 L~~L~l~~~~~~~----~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
|++|++.+|.... .+...+. .+++|+.+++++|.
T Consensus 252 L~~L~l~~n~i~~~~~~~l~~~~~---~~~~L~~l~l~~N~ 289 (319)
T cd00116 252 LLTLSLSCNDITDDGAKDLAEVLA---EKESLLELDLRGNK 289 (319)
T ss_pred ceEEEccCCCCCcHHHHHHHHHHh---cCCCccEEECCCCC
Confidence 9999999997642 2223233 67899999999874
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-12 Score=133.58 Aligned_cols=220 Identities=20% Similarity=0.200 Sum_probs=140.3
Q ss_pred cCccCCCeEEEcCCCC--CccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhccc
Q 038338 121 ETIRKDPIAISLPQRN--IQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLI 196 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~ 196 (421)
....++++.|-+..+. +..++. +..+|.|++|++++|.. ...+|..+ +.+-+||+|+++++.++.+|.++++++
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHH-hhhhhhhcccccCCCccccchHHHHHH
Confidence 3445579999999886 566665 44899999999999887 78899887 899999999999999999999999999
Q ss_pred CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc---ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcE-
Q 038338 197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE---QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEE- 270 (421)
Q Consensus 197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~- 270 (421)
.|.+|++..+.... |.....+++|++|.+...... ..-.++.++.+|+.+....... .+... +..++.|..
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~L~~~ 695 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTRLRSL 695 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHHHHHH
Confidence 99999999988544 555566999999999987533 2223455666666666544321 11111 223333332
Q ss_pred ---EEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-------c-ccCCceEEEEEcCCccchhhh
Q 038338 271 ---LYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-------V-SVELQRYRIRIGDKLEYEIDQ 339 (421)
Q Consensus 271 ---L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------~-~~~L~~L~l~~~~~~~~~~~~ 339 (421)
+.+.++. .......++.+.+|+.|.+..++..++.... . ++++..+.+..+..... +.
T Consensus 696 ~~~l~~~~~~---------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~--l~ 764 (889)
T KOG4658|consen 696 LQSLSIEGCS---------KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD--LT 764 (889)
T ss_pred hHhhhhcccc---------cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc--cc
Confidence 2221111 1123355777788888888777754322111 1 22333333332322221 22
Q ss_pred hhchhhhceeEEEcCCc
Q 038338 340 LLVKSEALRLMMLKGLE 356 (421)
Q Consensus 340 ~~~~l~~L~~L~l~~~~ 356 (421)
+..-.|+|+.|.+..|.
T Consensus 765 ~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCR 781 (889)
T ss_pred hhhccCcccEEEEeccc
Confidence 23344667777766654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=2.6e-14 Score=127.09 Aligned_cols=123 Identities=24% Similarity=0.265 Sum_probs=62.7
Q ss_pred ccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc-ccCCC-c-ccccCcCCCCEEE
Q 038338 149 LQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW-CQLED-V-AAIGQLKKLEILN 224 (421)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l~~L~~L~ 224 (421)
...+.+..|.+ ..+|...|+.+++||.|||++|+++.+ |..+..+..|..|-+.+ |+|++ | ..|.+|..|+.|.
T Consensus 69 tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 34455555552 555555555566666666666655553 44455555555544444 55555 3 4455555555555
Q ss_pred eeCCCCcccc-hhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338 225 LADSNIEQLP-LEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD 274 (421)
Q Consensus 225 l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 274 (421)
+.-|++..++ +.+..+++|..|.+.+ +..+.++...+..+.+++++.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhh
Confidence 5555555333 2345555555555555 23344444334444444444433
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.2e-13 Score=123.00 Aligned_cols=281 Identities=18% Similarity=0.155 Sum_probs=181.4
Q ss_pred CCCcccccccCccCCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccC-CCCCCC
Q 038338 112 VADLEKKMEETIRKDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIG-IHFSSL 188 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l 188 (421)
+..+..+| ..-+.+...+.+..|.+..+|+.. .+++||.|++++|.+ ..+....|.+++.|..|-+.+ |.++++
T Consensus 55 ~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 55 GKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 33444444 345667888889999998888554 888999999999985 666666678888877766665 788888
Q ss_pred Chh-hhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCc---------
Q 038338 189 PSS-LGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQ--------- 255 (421)
Q Consensus 189 p~~-i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--------- 255 (421)
|+. ++.+..|+-|.+..|.+.- ...+..+++|..|.+..|.+..++. .+..+..++++.+..+...-
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 865 7888889988888888776 6788889999999999998888877 57788888888776543110
Q ss_pred ---ccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc---cccCCceEEEEE
Q 038338 256 ---VIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF---VSVELQRYRIRI 329 (421)
Q Consensus 256 ---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~ 329 (421)
..|.+ ++.....+...+.+..+..+.. ..+... ...+..--.+.+....+.+.. ..++|++++++
T Consensus 212 ~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a----~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls- 282 (498)
T KOG4237|consen 212 DLAMNPIE-TSGARCVSPYRLYYKRINQEDA----RKFLCS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS- 282 (498)
T ss_pred HHhhchhh-cccceecchHHHHHHHhcccch----hhhhhh---HHhHHHhhccccCcCCcChHHHHhhcccceEeccC-
Confidence 11111 2222222222233322222211 011111 111111111122222222222 34888888887
Q ss_pred cCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338 330 GDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC 409 (421)
Q Consensus 330 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c 409 (421)
++.++..-+.++.+...++.|.+.+|++-.. ...-+.++ ..|+.|++.+|......|..+. .+..|..|++..+
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v--~~~~f~~l-s~L~tL~L~~N~it~~~~~aF~---~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFV--SSGMFQGL-SGLKTLSLYDNQITTVAPGAFQ---TLFSLSTLNLLSN 356 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHH--HHHhhhcc-ccceeeeecCCeeEEEeccccc---ccceeeeeehccC
Confidence 5666666677888889999999999774221 12234555 8999999999988777676666 7778888888766
Q ss_pred C
Q 038338 410 Y 410 (421)
Q Consensus 410 ~ 410 (421)
|
T Consensus 357 p 357 (498)
T KOG4237|consen 357 P 357 (498)
T ss_pred c
Confidence 5
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.5e-12 Score=121.25 Aligned_cols=181 Identities=24% Similarity=0.351 Sum_probs=154.4
Q ss_pred ccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEE
Q 038338 123 IRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL 201 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 201 (421)
.+......+++.|.+..+|..+ .|..|..+.+..|.+ ..+|..+ ..+..|.+|+++.|+++.+|..++.|+ |++|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeE
Confidence 3456667888888888888666 778888888888875 6677765 779999999999999999999888886 9999
Q ss_pred EcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 202 CLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 202 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
-+++|+++. |..++.+..|..||.+.|.+..+|..++.+.+|+.|.+..| .+..+|.+ +..| .|..||+++|.+..
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis~ 225 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKISY 225 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCceee
Confidence 999999998 99999889999999999999999999999999999999984 66778887 5644 58999999998877
Q ss_pred ccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccc
Q 038338 281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVS 319 (421)
Q Consensus 281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 319 (421)
.+ ..+.+|++|++|.+.+|.+..-|..++.
T Consensus 226 iP---------v~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 226 LP---------VDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred cc---------hhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 65 4689999999999999999887777644
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=5.2e-11 Score=98.11 Aligned_cols=108 Identities=23% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccc-cCc
Q 038338 140 LPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAI-GQL 217 (421)
Q Consensus 140 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~-~~l 217 (421)
++...+..+++.|++.+|.+ ..+.. +-..+.+|++|++++|.++.++. +..+.+|++|++++|.++. .+.+ ..+
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I--~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQI--STIEN-LGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp --------------------------S---TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-
T ss_pred cccccccccccccccccccc--ccccc-hhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhC
Confidence 33333444455555555543 11211 10124455555555555554432 4445555555555555544 2333 234
Q ss_pred CCCCEEEeeCCCCcccc--hhhcCCCCCCEEeccCC
Q 038338 218 KKLEILNLADSNIEQLP--LEIGQLTGLRLLDLTNC 251 (421)
Q Consensus 218 ~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~ 251 (421)
++|++|++++|++..+. ..+..+++|++|++.+|
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 55555555555444221 22344455555555443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=2.2e-12 Score=120.07 Aligned_cols=195 Identities=21% Similarity=0.209 Sum_probs=146.0
Q ss_pred CCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccC
Q 038338 172 TEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN 250 (421)
Q Consensus 172 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 250 (421)
+..-...|++.|.+..+|...+.+..|+.+.+..|.+.. |..+.++..|.+||++.|.+..+|..++.|+ |+.|-+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 344455678888888888888888888888888888877 8888888888888888888888888888777 78888777
Q ss_pred CcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEc
Q 038338 251 CWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIG 330 (421)
Q Consensus 251 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 330 (421)
+.+..+|.+ ++.+..|..|+.+.|.+...+ ..++++..|+.|.++.|++..+|+.+..-.|..|+++ |
T Consensus 153 -Nkl~~lp~~-ig~~~tl~~ld~s~nei~slp---------sql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfS-c 220 (722)
T KOG0532|consen 153 -NKLTSLPEE-IGLLPTLAHLDVSKNEIQSLP---------SQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFS-C 220 (722)
T ss_pred -CccccCCcc-cccchhHHHhhhhhhhhhhch---------HHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecc-c
Confidence 466777776 677778888888887765543 4578888888888888888888888777778888887 6
Q ss_pred CCccchhhhhhchhhhceeEEEcCCcccccccchhHHH--HhhhcccEEEecccc
Q 038338 331 DKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTK--MLLQRTEDLWLVKLE 383 (421)
Q Consensus 331 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 383 (421)
+... .+|..+.++..|++|.|.+|.+. .-|..+. ....-.++|++.-|.
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq---SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ---SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCC---CChHHHHhccceeeeeeecchhcc
Confidence 6666 57888888888898888886632 1222222 222556777777773
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.6e-11 Score=111.04 Aligned_cols=63 Identities=19% Similarity=0.035 Sum_probs=27.7
Q ss_pred ccCCCeEEEcCCCCCccCCc--cc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCC
Q 038338 123 IRKDPIAISLPQRNIQELPE--RL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHF 185 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 185 (421)
..++++.+++.++.+...+. .. .|++++.|++++|-+..-.....+...+++|+.|+++.|.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 34555555555555543331 11 55555555555554311111122233445555555555443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=1.2e-10 Score=95.92 Aligned_cols=127 Identities=23% Similarity=0.278 Sum_probs=55.1
Q ss_pred ccCccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhh-hcccC
Q 038338 120 EETIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLIN 197 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~ 197 (421)
........+.|++.++.+..+.... .+.+|++|++++|.+ ..+.. +..++.|++|++++|.++.++..+ ..+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 3444557899999999998887766 689999999999986 55554 467999999999999999987655 46899
Q ss_pred CcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccch----hhcCCCCCCEEeccC
Q 038338 198 LQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPL----EIGQLTGLRLLDLTN 250 (421)
Q Consensus 198 L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~ 250 (421)
|+.|.+++|.+.+ ...++.+++|+.|++.+|.++.-+. -+..+|+|+.||-..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999999999877 5778889999999999999885543 256678888887544
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.1e-11 Score=106.79 Aligned_cols=187 Identities=16% Similarity=0.161 Sum_probs=134.2
Q ss_pred ccCccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCc--ccChHH-------------------hccCCCccE
Q 038338 120 EETIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPV--QISDLF-------------------FEGTEELKV 177 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~--~~~~~~-------------------~~~l~~L~~ 177 (421)
.....+++..+.++.+..+.+.... .-|.|+++.+.+...... -+|... ....+.|..
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 3445677888888888776666555 557788887765432000 011000 011356788
Q ss_pred EEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCccc
Q 038338 178 LSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVI 257 (421)
Q Consensus 178 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~ 257 (421)
||+++|.++.+..++.-.+.++.|++++|.+....++..+++|+.||+++|.++.+..+-.++-+...|.++.| .+..+
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L 367 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL 367 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh
Confidence 88888888888778888888888888888888866688888888888888888877666677888888888884 55666
Q ss_pred chhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc
Q 038338 258 APNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD 316 (421)
Q Consensus 258 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 316 (421)
.. ++++-+|..|++++|.+..... ...+++++.|+.+.+.+|++..++..
T Consensus 368 SG--L~KLYSLvnLDl~~N~Ie~lde-------V~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 368 SG--LRKLYSLVNLDLSSNQIEELDE-------VNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hh--hHhhhhheeccccccchhhHHH-------hcccccccHHHHHhhcCCCccccchH
Confidence 54 7888888888888887765433 26688888888888888887666543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.5e-11 Score=108.86 Aligned_cols=204 Identities=15% Similarity=0.051 Sum_probs=144.8
Q ss_pred CCCCccEEEeeecCCCCcccCh-HHhccCCCccEEEccCCCCCC---CChhhhcccCCcEEEcccccCCCc---ccccCc
Q 038338 145 QCPNLQLFLLFRQGYGPVQISD-LFFEGTEELKVLSLIGIHFSS---LPSSLGRLINLQTLCLDWCQLEDV---AAIGQL 217 (421)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~---~~~~~l 217 (421)
++++|+...+.++.. ...+. .....+++++.|||+.|-+.. +-.-...+++|+.|+++.|++..| ..-..+
T Consensus 119 n~kkL~~IsLdn~~V--~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV--EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccc--cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 788999999988875 33331 334679999999999997654 334467799999999999986652 222367
Q ss_pred CCCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhc
Q 038338 218 KKLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELK 295 (421)
Q Consensus 218 ~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 295 (421)
.+|+.|.++.|+++ .+..-+..+++|..|++..|+....-... ...++.|++|++++|.+..... ....+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~-------~~~~~ 268 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ-------GYKVG 268 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc-------ccccc
Confidence 88999999999888 44444567899999999987432222222 4567889999999987665543 25678
Q ss_pred CCCCCCEEEEEecCccc--cCCc------ccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccc
Q 038338 296 RLTKLTTLEIEVRDAEI--LLPD------FVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV 358 (421)
Q Consensus 296 ~l~~L~~L~l~~~~~~~--~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 358 (421)
.++.|+.|.+..+.+.+ +|+. ..+++|+.|.+..++..+|.....+..+++|+.|.+..|+++
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 88899999998888653 2332 244788888887666656655566777777888877776643
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=3.4e-10 Score=97.84 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=78.8
Q ss_pred ccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-c------------------------ccccCcCCCCEEE
Q 038338 170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-V------------------------AAIGQLKKLEILN 224 (421)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~------------------------~~~~~l~~L~~L~ 224 (421)
.-+++|+.+.++.|.-+.+-.-...-+.|+++.+++..+.. | ..+..++.|.++|
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 34566777777766543322212223456666666554433 1 1222334555555
Q ss_pred eeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338 225 LADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304 (421)
Q Consensus 225 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 304 (421)
+++|.|+.+..++.-.++++.|++++|. +..+.. +..+++|+.|++++|.+.... .+-.++.+.++|.
T Consensus 291 LS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~---------Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 291 LSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECV---------GWHLKLGNIKTLK 358 (490)
T ss_pred ccccchhhhhhhhhhccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhh---------hhHhhhcCEeeee
Confidence 5555555555555555555555555532 222222 445555555555555443221 1122344555555
Q ss_pred EEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc
Q 038338 305 IEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE 356 (421)
Q Consensus 305 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 356 (421)
+..|.++.+...-..=+|..|++.+++.-...-...++++|.|+.+.+.+|.
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5555544333322233344444432222222222334444444444444433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.3e-09 Score=104.11 Aligned_cols=143 Identities=29% Similarity=0.358 Sum_probs=60.7
Q ss_pred CccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCc
Q 038338 174 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCW 252 (421)
Q Consensus 174 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 252 (421)
+|+.|+++++.+..+|..++.+++|+.|+++.|.+.+ +...+.+++|+.|+++++++..+|..+.....|+++.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 4444444444444444444444444444444444444 333334444444444444444444444344444444444432
Q ss_pred CCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEE
Q 038338 253 SLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRI 327 (421)
Q Consensus 253 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 327 (421)
..... .. +.++.++..+.+.+|.+... ...++.+.++++|+++.|.+..++......+++.|++
T Consensus 221 ~~~~~-~~-~~~~~~l~~l~l~~n~~~~~---------~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 221 IIELL-SS-LSNLKNLSGLELSNNKLEDL---------PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284 (394)
T ss_pred ceecc-hh-hhhcccccccccCCceeeec---------cchhccccccceeccccccccccccccccCccCEEec
Confidence 11111 11 33444444444333332221 1234444444455554444444444223344444444
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=2.5e-09 Score=102.28 Aligned_cols=182 Identities=27% Similarity=0.304 Sum_probs=150.0
Q ss_pred ccCccCCCeEEEcCCCCCccCCcccCCC--CccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccC
Q 038338 120 EETIRKDPIAISLPQRNIQELPERLQCP--NLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 197 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 197 (421)
.....+.++.+++.++.+..++...... +|+.|++++|.+ ..++... +.+++|+.|+++.|.+..+|...+.+..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccch--hhhhhhh-hccccccccccCCchhhhhhhhhhhhhh
Confidence 4445578999999999998898877553 899999999985 6664343 7899999999999999999998779999
Q ss_pred CcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338 198 LQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276 (421)
Q Consensus 198 L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (421)
|+.|++++|.+.. |..+.....|++|.+++|.+...+..+.++.++..+.+.++ .....+.. ++.+++++.|++++|
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n 265 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNN 265 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceeccccc
Confidence 9999999999999 77777888899999999987788888999999999997775 33333333 789999999999999
Q ss_pred CCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc
Q 038338 277 FSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD 316 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 316 (421)
.+.... .++.+.+++.|+++++.+...+..
T Consensus 266 ~i~~i~----------~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 266 QISSIS----------SLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccc----------cccccCccCEEeccCccccccchh
Confidence 877653 388899999999999887544433
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3e-10 Score=98.04 Aligned_cols=178 Identities=19% Similarity=0.115 Sum_probs=99.9
Q ss_pred CCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC-CCCCccccCCCCcChhhhc
Q 038338 219 KLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS-FSGWEKVEGGSNASLVELK 295 (421)
Q Consensus 219 ~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~ 295 (421)
.||+||+++..++ .+..-+..+.+|+.|.+.+......+... +.+-.+|+.|+++.+ .++.. +.---+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n-------~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTEN-------ALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccchh-------HHHHHHH
Confidence 4777777776665 44444556677777777775444444444 566677777777763 22221 1123356
Q ss_pred CCCCCCEEEEEecCcc-c-cCCcc--cccCCceEEEEEcCC--ccchhhhhhchhhhceeEEEcCCcccccccchhHHHH
Q 038338 296 RLTKLTTLEIEVRDAE-I-LLPDF--VSVELQRYRIRIGDK--LEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKM 369 (421)
Q Consensus 296 ~l~~L~~L~l~~~~~~-~-~~~~~--~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 369 (421)
+++.|.+|+++||.+. + +...+ -.++|..|+++++.. ....+..-...||+|..|++++|.-. ...+...+-+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l-~~~~~~~~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML-KNDCFQEFFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-CchHHHHHHh
Confidence 6777777777777642 1 11111 226677777765422 11122233456788888888875511 1122222333
Q ss_pred hhhcccEEEeccccCcc-cccccccccCCCCCccEEEEeec
Q 038338 370 LLQRTEDLWLVKLEGVQ-NVVHELDDGEGFPRLKHLHVESC 409 (421)
Q Consensus 370 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~i~~c 409 (421)
|+.|++|.+++|..+. ....++ ...|.|.+|++.+|
T Consensus 337 -f~~L~~lSlsRCY~i~p~~~~~l---~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 -FNYLQHLSLSRCYDIIPETLLEL---NSKPSLVYLDVFGC 373 (419)
T ss_pred -cchheeeehhhhcCCChHHeeee---ccCcceEEEEeccc
Confidence 3778888888887642 111222 37788888888776
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=3e-09 Score=93.98 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=85.7
Q ss_pred ccCCCCccEEEeeecCCCCcc--cChHHhccCCCccEEEccCCCCC----CCChh-------hhcccCCcEEEcccccCC
Q 038338 143 RLQCPNLQLFLLFRQGYGPVQ--ISDLFFEGTEELKVLSLIGIHFS----SLPSS-------LGRLINLQTLCLDWCQLE 209 (421)
Q Consensus 143 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~----~lp~~-------i~~l~~L~~L~l~~~~~~ 209 (421)
...+..++.+++++|.++... .....+.+.+.|+..++++-... .+|.. +..+++|++++++.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 336778888888888762211 22233456678888888775321 24433 334557888888887755
Q ss_pred C--c----ccccCcCCCCEEEeeCCCCcccch--------------hhcCCCCCCEEeccCCcCCcccch----hhhcCC
Q 038338 210 D--V----AAIGQLKKLEILNLADSNIEQLPL--------------EIGQLTGLRLLDLTNCWSLQVIAP----NVISKL 265 (421)
Q Consensus 210 ~--~----~~~~~l~~L~~L~l~~~~l~~lp~--------------~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l 265 (421)
. + .-+++++.|++|++.+|++..... -+..-++|+.+...+| .+..-+. ..+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhc
Confidence 4 3 334566777888887776652111 1223345555555443 2222111 123444
Q ss_pred CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc
Q 038338 266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA 310 (421)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 310 (421)
+.|+.+.+..|.+... +.......+..+++|+.|++..|-+
T Consensus 185 ~~leevr~~qN~I~~e----G~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPE----GVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred cccceEEEecccccCc----hhHHHHHHHHhCCcceeeecccchh
Confidence 5555555555443322 1123344455555555555555544
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.2e-10 Score=98.80 Aligned_cols=178 Identities=20% Similarity=0.121 Sum_probs=86.4
Q ss_pred CcEEEcccccCCC---cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccch-hhhcCCCCCcEEE
Q 038338 198 LQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAP-NVISKLSRLEELY 272 (421)
Q Consensus 198 L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~ 272 (421)
|++||++...++. ..-++.+.+|+.|.+.+..+. .+...+.+-.+|+.|+++.|+.+.+... -.+.+++.|+.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555555443 233444555555555555544 3333444555555555555544443222 1244556666666
Q ss_pred cccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc----cccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhc
Q 038338 273 MDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA----EILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEAL 347 (421)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 347 (421)
+++|......+. .....++ ++|+.|+++++.- ..+.... .+++|..|+++++..+.......+-+++.|
T Consensus 267 lsWc~l~~~~Vt----v~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 267 LSWCFLFTEKVT----VAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred chHhhccchhhh----HHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 666554433321 0111111 3555566655431 1111111 446677777766665555555556666777
Q ss_pred eeEEEcCCcccccccchhHHHHhhhcccEEEecccc
Q 038338 348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLE 383 (421)
Q Consensus 348 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (421)
++|.+++|+.-.. ...-.+... |.|.+|++.+|-
T Consensus 341 ~~lSlsRCY~i~p-~~~~~l~s~-psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDIIP-ETLLELNSK-PSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCCCh-HHeeeeccC-cceEEEEecccc
Confidence 7777777652100 001112333 677777776654
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=7.3e-08 Score=96.81 Aligned_cols=104 Identities=22% Similarity=0.292 Sum_probs=72.9
Q ss_pred CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338 197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273 (421)
Q Consensus 197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 273 (421)
.++.|++++|.+.. |..++++++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36677777777765 677777788888888877776 67777777888888888877666666665 677788888888
Q ss_pred ccCCCCCccccCCCCcChhhhcC-CCCCCEEEEEecC
Q 038338 274 DNSFSGWEKVEGGSNASLVELKR-LTKLTTLEIEVRD 309 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 309 (421)
++|.+....+ ..++. ..++..+++.+|.
T Consensus 498 s~N~l~g~iP--------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVP--------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCC--------hHHhhccccCceEEecCCc
Confidence 7777665544 33443 2355666776665
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=6.1e-09 Score=92.05 Aligned_cols=232 Identities=15% Similarity=0.101 Sum_probs=113.4
Q ss_pred CccCCCeEEEcCCCCCcc-----CCcc-cCCCCccEEEeeecCC--CCcccCh------HHhccCCCccEEEccCCCCCC
Q 038338 122 TIRKDPIAISLPQRNIQE-----LPER-LQCPNLQLFLLFRQGY--GPVQISD------LFFEGTEELKVLSLIGIHFSS 187 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~--~~~~~~~------~~~~~l~~L~~L~l~~~~~~~ 187 (421)
.....++.+++++|.++. +... .+.++|+..+++.-.. ....+|. ..+-++++|++|+||+|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 345566667777666621 1111 1445565555543221 0111111 112234567777777765532
Q ss_pred -----CChhhhcccCCcEEEcccccCCC--c-------------ccccCcCCCCEEEeeCCCCccc-----chhhcCCCC
Q 038338 188 -----LPSSLGRLINLQTLCLDWCQLED--V-------------AAIGQLKKLEILNLADSNIEQL-----PLEIGQLTG 242 (421)
Q Consensus 188 -----lp~~i~~l~~L~~L~l~~~~~~~--~-------------~~~~~l~~L~~L~l~~~~l~~l-----p~~~~~l~~ 242 (421)
+-.-+..+..|+.|.+.+|.+.. - ..+.+-++|+.+...+|.+... ...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 22234556666666666666443 1 1223345666776666665522 233455666
Q ss_pred CCEEeccCCcCCcc---cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc-----ccC
Q 038338 243 LRLLDLTNCWSLQV---IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-----ILL 314 (421)
Q Consensus 243 L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~ 314 (421)
|+.+.+..|..-.. +....+..+++|++|++..|.++... ..+....+...++|+.|.++.|.++ .+.
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg----s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG----SVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH----HHHHHHHhcccchheeecccccccccccHHHHH
Confidence 66666666432211 11122556667777777666555432 2233445556666666666666542 111
Q ss_pred Ccc--cccCCceEEEEEcCCccc---hhhhhhchhhhceeEEEcCCcc
Q 038338 315 PDF--VSVELQRYRIRIGDKLEY---EIDQLLVKSEALRLMMLKGLEK 357 (421)
Q Consensus 315 ~~~--~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~ 357 (421)
..+ ..++|+.+.+.++..... .+..+....|.|+.|++++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 111 235666666653332221 1223334456666666666553
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.61 E-value=1.9e-09 Score=97.29 Aligned_cols=279 Identities=18% Similarity=0.129 Sum_probs=167.7
Q ss_pred CCCeEEEcCCCCC---ccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CCC--CChhhhcccC
Q 038338 125 KDPIAISLPQRNI---QELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FSS--LPSSLGRLIN 197 (421)
Q Consensus 125 ~~l~~l~l~~~~~---~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~ 197 (421)
..++.+++.++.- ..+.... .+|+++.|.+.++...+......+-..+.+|++|++..|. ++. +-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4667788887765 2333333 8899999988888763333444555678999999999863 443 2233456889
Q ss_pred CcEEEccccc-CCC--c-ccccCcCCCCEEEeeCCC-Cc--ccchhhcCCCCCCEEeccCCcCCcccchh-hhcCCCCCc
Q 038338 198 LQTLCLDWCQ-LED--V-AAIGQLKKLEILNLADSN-IE--QLPLEIGQLTGLRLLDLTNCWSLQVIAPN-VISKLSRLE 269 (421)
Q Consensus 198 L~~L~l~~~~-~~~--~-~~~~~l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~ 269 (421)
|.+|++++|. +.+ . .-......++.+.+.+|. .. .+-..-..+..+-.+++.+|..+...... +-..+..||
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999999987 443 2 333455667777666652 11 22111123444555666666555443321 122466788
Q ss_pred EEEcccCCCCCccccCCCCcChhhhc-CCCCCCEEEEEecC-ccccCCcc---cccCCceEEEEEcCCccch-hhhhhch
Q 038338 270 ELYMDNSFSGWEKVEGGSNASLVELK-RLTKLTTLEIEVRD-AEILLPDF---VSVELQRYRIRIGDKLEYE-IDQLLVK 343 (421)
Q Consensus 270 ~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~---~~~~L~~L~l~~~~~~~~~-~~~~~~~ 343 (421)
.|..+++..... .....++ +..+|+.+.+..+. ++...... ..+.|+.+++..+...... +-.--.+
T Consensus 298 ~l~~s~~t~~~d-------~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 298 VLCYSSCTDITD-------EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhcccCCCCCch-------HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 888777543221 1223443 56788888888877 33222111 4488888888766554433 3344457
Q ss_pred hhhceeEEEcCCcccccc--c-chhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCcee
Q 038338 344 SEALRLMMLKGLEKVSIL--Q-ENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIV 413 (421)
Q Consensus 344 l~~L~~L~l~~~~~~~~~--~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~ 413 (421)
|+.|+.|.+++|..-+.. . ...+-... ..|+.|.+.+|+.+.+...+. ...+++|+.+++.+|....
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~-~~l~~lEL~n~p~i~d~~Le~--l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSL-EGLEVLELDNCPLITDATLEH--LSICRNLERIELIDCQDVT 440 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccc-cccceeeecCCCCchHHHHHH--HhhCcccceeeeechhhhh
Confidence 889999999987632111 0 01111223 678888889998875543222 3488899998888886543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=1.4e-07 Score=94.81 Aligned_cols=103 Identities=21% Similarity=0.368 Sum_probs=90.7
Q ss_pred CccEEEccCCCCCC-CChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEecc
Q 038338 174 ELKVLSLIGIHFSS-LPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLT 249 (421)
Q Consensus 174 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~ 249 (421)
.++.|+|+++.+.. +|..++.+.+|+.|++++|.+.. |..++.+++|+.|++++|++. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999875 89999999999999999999886 788999999999999999998 789999999999999999
Q ss_pred CCcCCcccchhhhcC-CCCCcEEEcccCC
Q 038338 250 NCWSLQVIAPNVISK-LSRLEELYMDNSF 277 (421)
Q Consensus 250 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 277 (421)
+|...+.+|.. ++. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 99888888886 554 3567788888774
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=8.5e-08 Score=64.86 Aligned_cols=56 Identities=32% Similarity=0.455 Sum_probs=27.2
Q ss_pred CccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCC
Q 038338 174 ELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSN 229 (421)
Q Consensus 174 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~ 229 (421)
+|++|++++|.++.+|. .+..+++|++|++++|.+.. +..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555544432 34445555555555555444 3344555555555555443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=6.6e-09 Score=99.62 Aligned_cols=107 Identities=27% Similarity=0.384 Sum_probs=59.3
Q ss_pred ccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEecc
Q 038338 170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLT 249 (421)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 249 (421)
..+++|..|++.+|.+..+...+..+.+|++|++++|.++...++..++.|+.|++.+|.+..+. ++..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 44566666666666665554445556666666666666666555556666666666666665543 34446666666666
Q ss_pred CCcCCcccch-hhhcCCCCCcEEEcccCCCC
Q 038338 250 NCWSLQVIAP-NVISKLSRLEELYMDNSFSG 279 (421)
Q Consensus 250 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 279 (421)
+|. +..+.. . +..+.+++.+++.+|.+.
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 642 222222 1 245555666666555444
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.48 E-value=6.9e-08 Score=96.84 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=101.3
Q ss_pred cCCCeEEEcCCCCC--ccCC-ccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338 124 RKDPIAISLPQRNI--QELP-ERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 199 (421)
Q Consensus 124 ~~~l~~l~l~~~~~--~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 199 (421)
..++++|++.+... ...+ ... .+|.|++|.+.+-.+ ..+-...++.++++|+.||+++++++.+ .+++.+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 45788888887654 2222 222 789999999988766 3333445568899999999999999888 6789999999
Q ss_pred EEEcccccCCC---cccccCcCCCCEEEeeCCCCcccchhh-------cCCCCCCEEeccCCcCCcccchhhhcCCCCCc
Q 038338 200 TLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLEI-------GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLE 269 (421)
Q Consensus 200 ~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~-------~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 269 (421)
+|.+++-.+.. ...+.+|++|+.||++..+....+.-+ ..|++|+.||.+++.....+....+..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99998877765 567888999999999987544333211 24778888888775443333333333444444
Q ss_pred EEE
Q 038338 270 ELY 272 (421)
Q Consensus 270 ~L~ 272 (421)
...
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=1.2e-09 Score=104.93 Aligned_cols=179 Identities=20% Similarity=0.133 Sum_probs=120.2
Q ss_pred ccCccCCCeEEEcCCCCCccCCcccCCC-CccEEEeeecCCC--------CcccChHHhccCCCccEEEccCCCCCCCCh
Q 038338 120 EETIRKDPIAISLPQRNIQELPERLQCP-NLQLFLLFRQGYG--------PVQISDLFFEGTEELKVLSLIGIHFSSLPS 190 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~--------~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 190 (421)
.+...+.+|+|.+.++++........+. .|+.|.-.+..-. .+++...+ ....|.+.+.++|.+..+-.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHH
Confidence 4566788999999999885544333221 2333332211000 11221111 12457777888888877777
Q ss_pred hhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcE
Q 038338 191 SLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEE 270 (421)
Q Consensus 191 ~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 270 (421)
++.-+++|+.|++++|++.+...+..+++|++||+++|.++.+|.--..-.+|+.|.+++| -+..+-. +.++++|+.
T Consensus 182 SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~g--ie~LksL~~ 258 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLRG--IENLKSLYG 258 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhhh--HHhhhhhhc
Confidence 8888999999999999998866899999999999999999888753222234899999885 4455544 678999999
Q ss_pred EEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc
Q 038338 271 LYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA 310 (421)
Q Consensus 271 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 310 (421)
||+++|.+..... +.-+..+..|+.|.+.+|.+
T Consensus 259 LDlsyNll~~hse-------L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSE-------LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhHhhhhcchh-------hhHHHHHHHHHHHhhcCCcc
Confidence 9999887654422 24455666777788877764
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=1.6e-08 Score=96.93 Aligned_cols=173 Identities=23% Similarity=0.307 Sum_probs=83.6
Q ss_pred cCccCCCeEEEcCCCCCccCCc-ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338 121 ETIRKDPIAISLPQRNIQELPE-RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 199 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 199 (421)
.....++..+++.++.+..+.. ...+++|++|++++|.+ ..+.. +..++.|+.|++++|.+..+.. +..+..|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I--~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI--TKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccc--ccccc--hhhccchhhheeccCcchhccC-Cccchhhh
Confidence 3445556666666666655555 34556666666666554 22222 1334555666666665554432 33355566
Q ss_pred EEEcccccCCCccc--ccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCC--CcEEEccc
Q 038338 200 TLCLDWCQLEDVAA--IGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSR--LEELYMDN 275 (421)
Q Consensus 200 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~ 275 (421)
.+++++|.+...+. ...+.+++.+++.+|.+..+. ++..+..+..+++..+ .+..+.. +..+.. |+.+.+.+
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n-~i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDN-KISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccc-cceeccC--cccchhHHHHHHhccc
Confidence 66666655555222 455555555656555554332 2222333333333332 1111111 122222 56666666
Q ss_pred CCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc
Q 038338 276 SFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE 311 (421)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 311 (421)
|.+.... ..+..+..+..|++..+.+.
T Consensus 242 n~i~~~~---------~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 242 NRISRSP---------EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred Ccccccc---------ccccccccccccchhhcccc
Confidence 5544321 23455566666666665554
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.9e-07 Score=62.22 Aligned_cols=57 Identities=33% Similarity=0.574 Sum_probs=28.3
Q ss_pred CCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338 219 KLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276 (421)
Q Consensus 219 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (421)
+|++|++++|+++.+|. .+..+++|++|++++| .+..++++.+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555555555543 2444555555555543 334444444555555555555544
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.9e-07 Score=81.05 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=55.2
Q ss_pred ccCCCccEEEccCCCCCC---CChhhhcccCCcEEEcccccCCC-cccc-cCcCCCCEEEeeCCCCc--ccchhhcCCCC
Q 038338 170 EGTEELKVLSLIGIHFSS---LPSSLGRLINLQTLCLDWCQLED-VAAI-GQLKKLEILNLADSNIE--QLPLEIGQLTG 242 (421)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~-~~~~-~~l~~L~~L~l~~~~l~--~lp~~~~~l~~ 242 (421)
...+.++.+|+.+|.+++ +..-..++++|++|+++.|.+.. ...+ ..+.+|+.|-+.++.+. .....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456777777777777654 44445677888888888877666 4444 46677788888777654 44455666777
Q ss_pred CCEEeccCC
Q 038338 243 LRLLDLTNC 251 (421)
Q Consensus 243 L~~L~l~~~ 251 (421)
+++|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777777664
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.24 E-value=4.2e-08 Score=88.83 Aligned_cols=277 Identities=15% Similarity=0.067 Sum_probs=146.0
Q ss_pred cCccCCCeEEEcCCCCC-c--cCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CCC--CChhhh
Q 038338 121 ETIRKDPIAISLPQRNI-Q--ELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FSS--LPSSLG 193 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~~-~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~ 193 (421)
...++++++|.+.++.. . ..-... .+++++.+++..|...+..........+++|++|++++|. +++ +-.-..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 35688999998888763 1 122222 8899999999987652333333455678999999999984 333 333345
Q ss_pred cccCCcEEEcccccCCCccccc----CcCCCCEEEeeCC-CCcc--cchhhcCCCCCCEEeccCCcCCcccchhhhc-CC
Q 038338 194 RLINLQTLCLDWCQLEDVAAIG----QLKKLEILNLADS-NIEQ--LPLEIGQLTGLRLLDLTNCWSLQVIAPNVIS-KL 265 (421)
Q Consensus 194 ~l~~L~~L~l~~~~~~~~~~~~----~l~~L~~L~l~~~-~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l 265 (421)
.+..++.+...+|.-...+.+. ....+..+++..| .++. +...-..+..|+.|+.++|...+..+...++ +.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 5666777766666532222221 2233444554455 2331 1111234666777777777665544333233 45
Q ss_pred CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc---cC-CcccccCCceEEEEEcCCccchh----
Q 038338 266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI---LL-PDFVSVELQRYRIRIGDKLEYEI---- 337 (421)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~~~~~~~~~---- 337 (421)
.+|+.|-+..|..-.. ..+..-=.+.++|+.+++..+.... +- ....++.|+.+.++.|...+...
T Consensus 320 ~~L~~l~l~~c~~fsd------~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSD------RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CceEEEeccccchhhh------hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 6777777766542110 0111112345566666666655321 11 11144666666665554443321
Q ss_pred hhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEE
Q 038338 338 DQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHV 406 (421)
Q Consensus 338 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i 406 (421)
...-.....|..+.++++.. ........+... ++|+.+++-+|.....-+..-. .+++|+++....
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~-i~d~~Le~l~~c-~~Leri~l~~~q~vtk~~i~~~-~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPL-ITDATLEHLSIC-RNLERIELIDCQDVTKEAISRF-ATHLPNIKVHAY 459 (483)
T ss_pred hhccccccccceeeecCCCC-chHHHHHHHhhC-cccceeeeechhhhhhhhhHHH-HhhCccceehhh
Confidence 11223345666666766552 222223333343 6677777766666544433222 345666655443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=2.7e-06 Score=52.73 Aligned_cols=37 Identities=35% Similarity=0.468 Sum_probs=19.1
Q ss_pred CccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC
Q 038338 174 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED 210 (421)
Q Consensus 174 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 210 (421)
+|++|++++|.++++|+.++.+++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555555555555555555555444
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.13 E-value=1e-06 Score=88.51 Aligned_cols=134 Identities=18% Similarity=0.177 Sum_probs=75.9
Q ss_pred CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC--CChhhhcccCCcEEEcccccCCCcccccCcCCCCEEE
Q 038338 147 PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILN 224 (421)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 224 (421)
.+|+.|+++|........+..+...+|.|+.|.+.+-.+.. +..-..++++|+.||++++.++...++++|++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 46777777765542334444444556777777777655432 2233345667777777777776667777777777777
Q ss_pred eeCCCCcccc--hhhcCCCCCCEEeccCCcCCccc--chh---hhcCCCCCcEEEcccCCCCC
Q 038338 225 LADSNIEQLP--LEIGQLTGLRLLDLTNCWSLQVI--APN---VISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 225 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~--~~~---~l~~l~~L~~L~l~~~~~~~ 280 (421)
+.+=.+.... .++.+|++|+.||+|.......- ... .-..+++|+.||.+++.+..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7665555222 34566777777777663322111 110 01246667777766654443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=1.5e-07 Score=90.92 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=58.2
Q ss_pred CCCccEEEeeecCCCCccc-ChHHhccCCCccEEEccCCCCCCCChhhhcc-cCCcEEEcccccCCC--------ccccc
Q 038338 146 CPNLQLFLLFRQGYGPVQI-SDLFFEGTEELKVLSLIGIHFSSLPSSLGRL-INLQTLCLDWCQLED--------VAAIG 215 (421)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l-~~L~~L~l~~~~~~~--------~~~~~ 215 (421)
++++++|.+-.... .+.. |..+ -.++.||+|.+.+|.+... .++..+ .+|+.|.. .++... ...+.
T Consensus 83 lqkt~~lkl~~~pa-~~pt~pi~i-fpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPA-RDPTEPISI-FPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCC-CCCCCCcee-ccccceeeEEecCcchhhh-hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccc
Confidence 44555555544332 1111 4454 3578899999988877542 122222 22444322 212111 11111
Q ss_pred C---cCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 216 Q---LKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 216 ~---l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
+ +-.|...+.+.|.+..+...+.-++.|++|++++| .+..+.. +..++.|++||+++|.+..
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~~--Lr~l~~LkhLDlsyN~L~~ 223 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVDN--LRRLPKLKHLDLSYNCLRH 223 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhHH--HHhcccccccccccchhcc
Confidence 1 22344445555555555445555555555555553 2222221 4455555555555554443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=6.6e-07 Score=77.76 Aligned_cols=208 Identities=16% Similarity=0.078 Sum_probs=128.7
Q ss_pred ccEEEccCCCCCCC--Chhhh-cccCCcEEEcccccCCC----cccccCcCCCCEEEeeCCCCcccchhh-cCCCCCCEE
Q 038338 175 LKVLSLIGIHFSSL--PSSLG-RLINLQTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLL 246 (421)
Q Consensus 175 L~~L~l~~~~~~~l--p~~i~-~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L 246 (421)
+..|.+.++.+... -..++ ...+++.+|+.+|.+++ ..-+.+++.|+.|+++.|.+..--... ..+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33566666666542 12233 36789999999999887 244567899999999998776222222 356788888
Q ss_pred eccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcccc---CCcc-cccCC
Q 038338 247 DLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL---LPDF-VSVEL 322 (421)
Q Consensus 247 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~-~~~~L 322 (421)
-+.+.+....-....+..++.+++|.++.|.+.....+. ...+. --+.+++|+...|..... .... .++++
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd---~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDD---NCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccc---ccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 888765544444445677888888888887443221110 00011 113455555555543211 1111 34788
Q ss_pred ceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccc
Q 038338 323 QRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVV 389 (421)
Q Consensus 323 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 389 (421)
..+.+..+..-+...-.....+|.+--|+++.+.+ .+....+.+..+ |.|..|.+.+++.+..+-
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasvD~Ln~f-~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASVDALNGF-PQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHHHHHcCC-chhheeeccCCccccccc
Confidence 88888655444433445566778888888888774 344455556665 999999999998876553
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=9.1e-06 Score=50.37 Aligned_cols=33 Identities=39% Similarity=0.644 Sum_probs=15.0
Q ss_pred CCCEEEeeCCCCcccchhhcCCCCCCEEeccCC
Q 038338 219 KLEILNLADSNIEQLPLEIGQLTGLRLLDLTNC 251 (421)
Q Consensus 219 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 251 (421)
+|++|++++|+++.+|+.+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344444444444444444444555555554443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2.5e-05 Score=72.74 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=27.0
Q ss_pred cCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338 217 LKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276 (421)
Q Consensus 217 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (421)
+.+++.|++++|.++.+|. -..+|++|.+++|..+..+|.. + ..+|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence 4555555555555555551 2234555555555555444432 2 235555555554
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=5.5e-07 Score=69.21 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=62.8
Q ss_pred CCeEEEcCCCCCccCC----cccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEE
Q 038338 126 DPIAISLPQRNIQELP----ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL 201 (421)
Q Consensus 126 ~l~~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 201 (421)
....++++.|.+..++ ..+...+|+..++++|.+ .++|..+-.+++.+..|++++|.+.++|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 3444556666553333 222445555666666653 5555555555556666666666666666666666666666
Q ss_pred EcccccCCC-cccccCcCCCCEEEeeCCCCcccchh
Q 038338 202 CLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLE 236 (421)
Q Consensus 202 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~ 236 (421)
+++.|.+.. |..+..+.++-.|+..++.+..+|-+
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 666666555 65555566666666666655555544
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=1.4e-06 Score=66.97 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=81.1
Q ss_pred CCccEEEeeecCCC-CcccChHHhccCCCccEEEccCCCCCCCChhhhc-ccCCcEEEcccccCCC-cccccCcCCCCEE
Q 038338 147 PNLQLFLLFRQGYG-PVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGR-LINLQTLCLDWCQLED-VAAIGQLKKLEIL 223 (421)
Q Consensus 147 ~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L 223 (421)
..+..++++.|... ..+.+..+ .+..+|...++++|.++++|+.+.. .+..++|++.+|.+.+ |..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l-~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYML-SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHH-hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 34555666666541 12223333 5567788888999988888877655 4578888888888888 8888888888999
Q ss_pred EeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchh
Q 038338 224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPN 260 (421)
Q Consensus 224 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 260 (421)
+++.|.+...|.-+..+.+|..|+..++ ....++..
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 9888888888888888888888887774 34455543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=8.1e-05 Score=61.45 Aligned_cols=81 Identities=26% Similarity=0.325 Sum_probs=38.7
Q ss_pred ccCCCccEEEccCCCCCCCChhhhc-ccCCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccch----hhcCCC
Q 038338 170 EGTEELKVLSLIGIHFSSLPSSLGR-LINLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPL----EIGQLT 241 (421)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~ 241 (421)
..++.|..|.+.+|.++.+.+.+.. +++|..|.+.+|++.. ...+..++.|++|.+-+|.+++-+. -+..++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 3445555555555555544333333 3345555555555443 3444455555555555555443222 134455
Q ss_pred CCCEEeccC
Q 038338 242 GLRLLDLTN 250 (421)
Q Consensus 242 ~L~~L~l~~ 250 (421)
+|+.||+..
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 555555543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00016 Score=67.48 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=48.4
Q ss_pred ccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCC-CCCCCChhhhcccCCcEE
Q 038338 123 IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGI-HFSSLPSSLGRLINLQTL 201 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L 201 (421)
.+.++++|++++|.+..+|.. -++|+.|.+.++.. ...+|..+ ..+|++|++++| .+..+|.+ |+.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~n-LtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNN-LTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCC-cccCCchh---hhhhhheEccCcccccccccc------cceE
Confidence 346777888888877777731 23688888887655 45556544 357888888887 56666653 5556
Q ss_pred Eccccc
Q 038338 202 CLDWCQ 207 (421)
Q Consensus 202 ~l~~~~ 207 (421)
++..+.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.00014 Score=60.04 Aligned_cols=102 Identities=22% Similarity=0.203 Sum_probs=83.9
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC--hhhhcccCCcEEE
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP--SSLGRLINLQTLC 202 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~ 202 (421)
.+...+++.+|++..++.+..+++|.+|.+.+|.+ ..+...+-..+++|..|.+.+|++..+. ..+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45677899999998888888999999999999986 5566555566889999999999987642 2367789999999
Q ss_pred cccccCCC-----cccccCcCCCCEEEeeCC
Q 038338 203 LDWCQLED-----VAAIGQLKKLEILNLADS 228 (421)
Q Consensus 203 l~~~~~~~-----~~~~~~l~~L~~L~l~~~ 228 (421)
+-+|.++. ..-+.++++|+.||+.+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99998776 357889999999999874
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.45 E-value=0.00023 Score=61.50 Aligned_cols=142 Identities=14% Similarity=0.043 Sum_probs=77.0
Q ss_pred cCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc--ccCCc-----ccccCCceEEEEEcCCccc
Q 038338 263 SKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE--ILLPD-----FVSVELQRYRIRIGDKLEY 335 (421)
Q Consensus 263 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-----~~~~~L~~L~l~~~~~~~~ 335 (421)
..-+.|++.....|.+..-+. .-....+....+|+.+.+..|.+. ++... ..+.+|+.|++..+ .++.
T Consensus 154 a~kp~Le~vicgrNRlengs~----~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~ 228 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSK----ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTL 228 (388)
T ss_pred ccCCCceEEEeccchhccCcH----HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhh
Confidence 355667777766665543222 111233444467888888888764 22111 14488888888633 2221
Q ss_pred h----hhhhhchhhhceeEEEcCCccccccc--chhHHHH-hhhcccEEEeccccCcccccc-----cccccCCCCCccE
Q 038338 336 E----IDQLLVKSEALRLMMLKGLEKVSILQ--ENDGTKM-LLQRTEDLWLVKLEGVQNVVH-----ELDDGEGFPRLKH 403 (421)
Q Consensus 336 ~----~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~L~~ 403 (421)
. +...+..-+.|+.|.+.+|-+...+. ....+.. .+|+|..|....+..-..+.. .+. -.++|-|..
T Consensus 229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e-~~~~p~L~~ 307 (388)
T COG5238 229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE-QDAVPLLVD 307 (388)
T ss_pred hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh-hcccHHHHH
Confidence 1 12223333668888888876433221 1122222 248888888877765433221 122 346788887
Q ss_pred EEEeecC
Q 038338 404 LHVESCY 410 (421)
Q Consensus 404 L~i~~c~ 410 (421)
|.+.+++
T Consensus 308 le~ngNr 314 (388)
T COG5238 308 LERNGNR 314 (388)
T ss_pred HHHccCc
Confidence 7777763
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=7.5e-06 Score=70.67 Aligned_cols=100 Identities=24% Similarity=0.264 Sum_probs=66.0
Q ss_pred CCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccch--hhcCCCCCCEEecc
Q 038338 172 TEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPL--EIGQLTGLRLLDLT 249 (421)
Q Consensus 172 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~ 249 (421)
+.+.+.|+.-+|.+.++.- ..+|+.|++|.++-|+|+....+..+++|++|+|..|.|..+.+ .+.++++|+.|.+.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 4555666666776665422 35577777777777777776667777777777777777765532 35677777777777
Q ss_pred CCcCCcccchh----hhcCCCCCcEEE
Q 038338 250 NCWSLQVIAPN----VISKLSRLEELY 272 (421)
Q Consensus 250 ~~~~~~~~~~~----~l~~l~~L~~L~ 272 (421)
.|...+..+.. .+.-+++|++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 76665554432 355677777776
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.23 E-value=0.00065 Score=58.83 Aligned_cols=217 Identities=20% Similarity=0.102 Sum_probs=123.6
Q ss_pred cCCCccEEEccCCCCCC-----CChhhhcccCCcEEEcccccCC---C--c-------ccccCcCCCCEEEeeCCCCc-c
Q 038338 171 GTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLE---D--V-------AAIGQLKKLEILNLADSNIE-Q 232 (421)
Q Consensus 171 ~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~---~--~-------~~~~~l~~L~~L~l~~~~l~-~ 232 (421)
.+..+..+++++|.+.. +...|.+-.+|+..+++.--.. + + +.+-++++|+..+++.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 36778888888887753 4445566667777776653211 1 2 33445566666666666544 3
Q ss_pred cchh----hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEec
Q 038338 233 LPLE----IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVR 308 (421)
Q Consensus 233 lp~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 308 (421)
.|+. +..-+.|.||.+++|. ++.+..+.++ +.|++|. ..+.....+.|+......|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig--kal~~la-----------------~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG--KALFHLA-----------------YNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHH--HHHHHHH-----------------HHhhhccCCCceEEEeccc
Confidence 3332 3344556666665542 2222222121 1122221 1133456688999999888
Q ss_pred CccccCCcc-----cc-cCCceEEEEEcCCccch----hhhhhchhhhceeEEEcCCcccccccchhHHHHhh---hccc
Q 038338 309 DAEILLPDF-----VS-VELQRYRIRIGDKLEYE----IDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLL---QRTE 375 (421)
Q Consensus 309 ~~~~~~~~~-----~~-~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---~~L~ 375 (421)
.+...+... .+ .+|+.+.+..++..... ....+..+.+|+.|++.+|-+.... ...++..+ +.|+
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g--S~~La~al~~W~~lr 245 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG--SRYLADALCEWNLLR 245 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh--HHHHHHHhcccchhh
Confidence 886655443 22 58889998755433321 2234667899999999997643222 22222221 6789
Q ss_pred EEEeccccCccc----ccccccccCCCCCccEEEEeecC
Q 038338 376 DLWLVKLEGVQN----VVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 376 ~L~l~~~~~~~~----~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
.|.+.+|-.-.. +...+. ...+|+|..|...++.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~-e~~~p~l~~L~~~Yne 283 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFN-EKFVPNLMPLPGDYNE 283 (388)
T ss_pred hccccchhhccccHHHHHHHhh-hhcCCCccccccchhh
Confidence 999998865422 222222 3467999988887764
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=4.4e-05 Score=74.99 Aligned_cols=127 Identities=25% Similarity=0.311 Sum_probs=63.6
Q ss_pred CCCCccEEEeeecCCCCccc-ChHHhccCCCccEEEccCC-CC-CC----CChhhhcccCCcEEEccccc-CCC--cccc
Q 038338 145 QCPNLQLFLLFRQGYGPVQI-SDLFFEGTEELKVLSLIGI-HF-SS----LPSSLGRLINLQTLCLDWCQ-LED--VAAI 214 (421)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~-~~-~~----lp~~i~~l~~L~~L~l~~~~-~~~--~~~~ 214 (421)
.++.++.+.+.++.. .... ...+...+++|+.|+++++ .. .. .......+.+|+.|+++++. +++ ...+
T Consensus 186 ~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSK-ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhccccc-CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 356666666666543 2221 1233355667777777652 11 11 11223345666667776666 444 3333
Q ss_pred cC-cCCCCEEEeeCCC-Cc--ccchhhcCCCCCCEEeccCCcCCcc--cchhhhcCCCCCcEEEc
Q 038338 215 GQ-LKKLEILNLADSN-IE--QLPLEIGQLTGLRLLDLTNCWSLQV--IAPNVISKLSRLEELYM 273 (421)
Q Consensus 215 ~~-l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l 273 (421)
.. +++|++|.+.+|. ++ .+-.....+++|++|+++.|..+.. +... ..++++|+.|.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhh
Confidence 32 5667777666554 44 3333344566677777766655422 2221 334555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.0005 Score=59.23 Aligned_cols=80 Identities=25% Similarity=0.282 Sum_probs=43.1
Q ss_pred cCCCccEEEccCC--CCC-CCChhhhcccCCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCcccch----hhcCC
Q 038338 171 GTEELKVLSLIGI--HFS-SLPSSLGRLINLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQLPL----EIGQL 240 (421)
Q Consensus 171 ~l~~L~~L~l~~~--~~~-~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l 240 (421)
.+++|++|.++.| .+. .++.....+++|++|+++.|.+.. ...+..+.+|..|++.+|....+-. -+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4566666666666 322 244444455666666666666553 3444555666666666665554321 13345
Q ss_pred CCCCEEeccC
Q 038338 241 TGLRLLDLTN 250 (421)
Q Consensus 241 ~~L~~L~l~~ 250 (421)
++|.+|+-..
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 5555555444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=6.8e-05 Score=64.93 Aligned_cols=105 Identities=26% Similarity=0.367 Sum_probs=78.6
Q ss_pred ccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccch-hhhcCCCCCcEEEc
Q 038338 195 LINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAP-NVISKLSRLEELYM 273 (421)
Q Consensus 195 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l 273 (421)
+.+.+.|+.-+|.+.+..-..+++.|+.|.|+-|+|+.+. .+..+++|++|++..|. +..+.. ..+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 5567788888988888888889999999999999999884 48899999999998853 333322 34789999999999
Q ss_pred ccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338 274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 304 (421)
..|..... .+.+-....+.-+++|++|+
T Consensus 96 ~ENPCc~~---ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGE---AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccc---cchhHHHHHHHHcccchhcc
Confidence 88744322 12233345577778888776
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.65 E-value=0.00023 Score=69.98 Aligned_cols=133 Identities=22% Similarity=0.273 Sum_probs=80.6
Q ss_pred HHhccCCCccEEEccCCC-CCC--CChhhhcccCCcEEEcccc-c-CCC-----cccccCcCCCCEEEeeCCC-Cccc-c
Q 038338 167 LFFEGTEELKVLSLIGIH-FSS--LPSSLGRLINLQTLCLDWC-Q-LED-----VAAIGQLKKLEILNLADSN-IEQL-P 234 (421)
Q Consensus 167 ~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~~-~-~~~-----~~~~~~l~~L~~L~l~~~~-l~~l-p 234 (421)
.+...++.|+.|.+.++. +.. +-+....+++|+.|+++++ . +.. ......+.+|+.|+++++. ++.. -
T Consensus 182 ~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 334457888888888873 343 3445677888999999873 2 111 2334456888899998886 5521 1
Q ss_pred hhh-cCCCCCCEEeccCCcCCccc-chhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338 235 LEI-GQLTGLRLLDLTNCWSLQVI-APNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI 305 (421)
Q Consensus 235 ~~~-~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 305 (421)
..+ ..+++|++|.+.+|..+... -..+...+++|++|+++++..... ........++++++.|.+
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d------~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD------SGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH------HHHHHHHHhCcchhhhhh
Confidence 222 34788999988877643322 222345678899999887654311 112233445666666544
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.0014 Score=56.51 Aligned_cols=112 Identities=24% Similarity=0.224 Sum_probs=82.3
Q ss_pred CccCCCeEEEcCCCCCccCCcccCCCCccEEEeeec--CCCCcccChHHhccCCCccEEEccCCCCCC---CChhhhccc
Q 038338 122 TIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQ--GYGPVQISDLFFEGTEELKVLSLIGIHFSS---LPSSLGRLI 196 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~ 196 (421)
.....++.+++.+..+.++.....+++|+.|.++.| .. ...+.... .++++|++|++++|.+.. +++ ...+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~-~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~p-l~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRV-SGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRP-LKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccc-cccceehh-hhCCceeEEeecCCccccccccch-hhhhc
Confidence 345577778888877777777778999999999999 43 34444433 567999999999998764 333 67788
Q ss_pred CCcEEEcccccCCC-----cccccCcCCCCEEEeeCCCCcccchh
Q 038338 197 NLQTLCLDWCQLED-----VAAIGQLKKLEILNLADSNIEQLPLE 236 (421)
Q Consensus 197 ~L~~L~l~~~~~~~-----~~~~~~l~~L~~L~l~~~~l~~lp~~ 236 (421)
+|..|++..|..+. -..+.-+++|++|+-....-...|..
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence 89999999988655 24556679999998877655555543
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.00046 Score=57.12 Aligned_cols=78 Identities=13% Similarity=-0.042 Sum_probs=52.1
Q ss_pred hhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338 336 EIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI 415 (421)
Q Consensus 336 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l 415 (421)
+....+.+++.++.|.+.+|. .-.....+.+++++++|+.|+|+.|+.+++-...- ...|++|+.|.|.+.+.....
T Consensus 116 eGle~L~~l~~i~~l~l~~ck-~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~--L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 116 EGLEHLRDLRSIKSLSLANCK-YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC--LLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HHHHHHhccchhhhheecccc-chhhHHHHHhcccccchheeeccCCCeechhHHHH--HHHhhhhHHHHhcCchhhhch
Confidence 444557777778888887776 33344455566677888888888888776553211 337888888888877766554
Q ss_pred c
Q 038338 416 V 416 (421)
Q Consensus 416 ~ 416 (421)
-
T Consensus 193 e 193 (221)
T KOG3864|consen 193 E 193 (221)
T ss_pred H
Confidence 3
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0027 Score=32.63 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=12.8
Q ss_pred CCCEEEeeCCCCcccchhhcC
Q 038338 219 KLEILNLADSNIEQLPLEIGQ 239 (421)
Q Consensus 219 ~L~~L~l~~~~l~~lp~~~~~ 239 (421)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.87 E-value=0.027 Score=44.18 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=6.9
Q ss_pred cChHHhccCCCccEEEccC
Q 038338 164 ISDLFFEGTEELKVLSLIG 182 (421)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~ 182 (421)
+....|..+++|+.+.+..
T Consensus 26 I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp E-TTTTTT-TT-SEEEESS
T ss_pred eChhhcccccccccccccc
Confidence 3333344444444444443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.77 E-value=0.039 Score=43.23 Aligned_cols=105 Identities=15% Similarity=0.271 Sum_probs=57.7
Q ss_pred ChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCC
Q 038338 165 SDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQL 240 (421)
Q Consensus 165 ~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l 240 (421)
+...|.++++|+.+.+.. .+..++. .+..+.+|+.+.+..+ +.. ...+.++++++.+.+.. .+..++.. +..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 444567778888888875 4555543 4667778888888774 555 45677777888888865 55555443 5568
Q ss_pred CCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338 241 TGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275 (421)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 275 (421)
++|+.+.+..+ +..++...+... +|+.+.+..
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 88888888652 455665556666 777777654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0041 Score=31.91 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=13.1
Q ss_pred CccEEEccCCCCCCCChhhhc
Q 038338 174 ELKVLSLIGIHFSSLPSSLGR 194 (421)
Q Consensus 174 ~L~~L~l~~~~~~~lp~~i~~ 194 (421)
+|++|++++|.++.+|++++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366677777766666665543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.83 E-value=0.02 Score=27.20 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=7.1
Q ss_pred CCCEEEeeCCCCcccc
Q 038338 219 KLEILNLADSNIEQLP 234 (421)
Q Consensus 219 ~L~~L~l~~~~l~~lp 234 (421)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655544
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.28 E-value=0.031 Score=26.55 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=7.3
Q ss_pred CccEEEccCCCCCCCC
Q 038338 174 ELKVLSLIGIHFSSLP 189 (421)
Q Consensus 174 ~L~~L~l~~~~~~~lp 189 (421)
+|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666655543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=0.034 Score=46.33 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=50.3
Q ss_pred hhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceee
Q 038338 345 EALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVH 414 (421)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 414 (421)
..++.++-+++.++ ....+.+.++ +.++.|.+.+|....++..+.. .+..|+|+.|+|++||.+.+
T Consensus 101 ~~IeaVDAsds~I~--~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 101 VKIEAVDASDSSIM--YEGLEHLRDL-RSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ceEEEEecCCchHH--HHHHHHHhcc-chhhhheeccccchhhHHHHHh-cccccchheeeccCCCeech
Confidence 45777777776632 2234456666 9999999999999988875554 55889999999999999864
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.95 E-value=0.14 Score=27.29 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=14.9
Q ss_pred cCCCCEEEeeCCCCcccchhh
Q 038338 217 LKKLEILNLADSNIEQLPLEI 237 (421)
Q Consensus 217 l~~L~~L~l~~~~l~~lp~~~ 237 (421)
+++|++|++++|+++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777777654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.95 E-value=0.14 Score=27.29 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=14.9
Q ss_pred cCCCCEEEeeCCCCcccchhh
Q 038338 217 LKKLEILNLADSNIEQLPLEI 237 (421)
Q Consensus 217 l~~L~~L~l~~~~l~~lp~~~ 237 (421)
+++|++|++++|+++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777777654
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.49 E-value=0.011 Score=50.38 Aligned_cols=85 Identities=9% Similarity=-0.018 Sum_probs=61.9
Q ss_pred cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCE
Q 038338 144 LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEI 222 (421)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~ 222 (421)
..+...++|+++.|.. ..+-.. |+.++.|..|+++.+.+..+|...+.+..++.++...|..+. |.+++..+++++
T Consensus 39 ~~~kr~tvld~~s~r~--vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRL--VNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHH--Hhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 3667788888887764 333333 255677777888888887788888888778888777777776 888888888888
Q ss_pred EEeeCCCCc
Q 038338 223 LNLADSNIE 231 (421)
Q Consensus 223 L~l~~~~l~ 231 (421)
++..++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888777644
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.87 E-value=0.44 Score=25.30 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=14.1
Q ss_pred CCCccEEEccCCCCCCCChh
Q 038338 172 TEELKVLSLIGIHFSSLPSS 191 (421)
Q Consensus 172 l~~L~~L~l~~~~~~~lp~~ 191 (421)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777664
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.87 E-value=0.44 Score=25.30 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=14.1
Q ss_pred CCCccEEEccCCCCCCCChh
Q 038338 172 TEELKVLSLIGIHFSSLPSS 191 (421)
Q Consensus 172 l~~L~~L~l~~~~~~~lp~~ 191 (421)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777664
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.26 E-value=0.025 Score=48.22 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=54.1
Q ss_pred ccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEec
Q 038338 170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL 248 (421)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 248 (421)
..++..++||++.++...+-..++.+..|..|+++.+.+.- |..++.+..+..+++..|+.++.|.+.+..+.+++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34566666677666666555556666666666666666665 66666666666666666666666766666777776666
Q ss_pred cCCc
Q 038338 249 TNCW 252 (421)
Q Consensus 249 ~~~~ 252 (421)
..+.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 6543
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.56 E-value=0.32 Score=25.90 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=11.5
Q ss_pred CCCccEEEEeecCcee
Q 038338 398 FPRLKHLHVESCYEIV 413 (421)
Q Consensus 398 ~~~L~~L~i~~c~~L~ 413 (421)
+|+|+.|++.+|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4677777777777664
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.81 E-value=0.056 Score=52.56 Aligned_cols=178 Identities=21% Similarity=0.161 Sum_probs=91.4
Q ss_pred CeEEEcCCCCCccCC------cccCCCCccEEEeeecCCCCcccCh---HHhccC-CCccEEEccCCCCCC-----CChh
Q 038338 127 PIAISLPQRNIQELP------ERLQCPNLQLFLLFRQGYGPVQISD---LFFEGT-EELKVLSLIGIHFSS-----LPSS 191 (421)
Q Consensus 127 l~~l~l~~~~~~~l~------~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~l-~~L~~L~l~~~~~~~-----lp~~ 191 (421)
+.++++.+|.+..-. .....+.|..|++.+|.+ ...-.. ..+... +.+++|++..|.+.. +...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 556666666652211 111556666777777765 111111 111111 445666666666543 4445
Q ss_pred hhcccCCcEEEcccccCCC------cccc----cCcCCCCEEEeeCCCCc-----ccchhhcCCCC-CCEEeccCCcCCc
Q 038338 192 LGRLINLQTLCLDWCQLED------VAAI----GQLKKLEILNLADSNIE-----QLPLEIGQLTG-LRLLDLTNCWSLQ 255 (421)
Q Consensus 192 i~~l~~L~~L~l~~~~~~~------~~~~----~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~-L~~L~l~~~~~~~ 255 (421)
+....+++.++++.|.+.. +..+ ....++++|++.+|.++ .+...+...++ ++.+++..|..-.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556677777777776432 1222 34666777777777655 11122334444 5556666643221
Q ss_pred c----cchhhhcCC-CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc
Q 038338 256 V----IAPNVISKL-SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA 310 (421)
Q Consensus 256 ~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 310 (421)
. +.+. +..+ ..++++++..|.++.... ....+.+..+++++.+.+..|.+
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~----~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV----RDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCccccch----HHHHHHHhhhHHHHHhhcccCcc
Confidence 1 1121 3344 456777777766554322 23345556666677777766664
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.00 E-value=1.4 Score=23.50 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=13.2
Q ss_pred CCCCEEEeeCCCCcccch
Q 038338 218 KKLEILNLADSNIEQLPL 235 (421)
Q Consensus 218 ~~L~~L~l~~~~l~~lp~ 235 (421)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777888887777775
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.92 E-value=0.067 Score=52.00 Aligned_cols=176 Identities=22% Similarity=0.192 Sum_probs=94.9
Q ss_pred ccEEEeeecCCCCcc--cChHHhccCCCccEEEccCCCCCC-----CChhhhcc-cCCcEEEcccccCCC------cccc
Q 038338 149 LQLFLLFRQGYGPVQ--ISDLFFEGTEELKVLSLIGIHFSS-----LPSSLGRL-INLQTLCLDWCQLED------VAAI 214 (421)
Q Consensus 149 L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l-~~L~~L~l~~~~~~~------~~~~ 214 (421)
+..+.+.+|...... .....+.....|..|++++|.+.. +-..+... ..|++|.+..|.++. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777651111 112234556778888888887753 11222222 456777777777654 2455
Q ss_pred cCcCCCCEEEeeCCCCc-----ccchhhc----CCCCCCEEeccCCcCCcccc---hhhhcCCCC-CcEEEcccCCCCCc
Q 038338 215 GQLKKLEILNLADSNIE-----QLPLEIG----QLTGLRLLDLTNCWSLQVIA---PNVISKLSR-LEELYMDNSFSGWE 281 (421)
Q Consensus 215 ~~l~~L~~L~l~~~~l~-----~lp~~~~----~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~-L~~L~l~~~~~~~~ 281 (421)
.....++.++++.|.+. .++..+. ...++++|.+.+|.....-. ...+...+. +.+|++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 56777888888887653 2223333 46677777777765432211 112444444 55677766655433
Q ss_pred cccCCCCcChhhhcCC-CCCCEEEEEecCcccc-----CCcc-cccCCceEEEE
Q 038338 282 KVEGGSNASLVELKRL-TKLTTLEIEVRDAEIL-----LPDF-VSVELQRYRIR 328 (421)
Q Consensus 282 ~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~-----~~~~-~~~~L~~L~l~ 328 (421)
.. ......+..+ ..++.+++..|++++- ...+ .++.++.+.+.
T Consensus 249 g~----~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 249 GV----EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred HH----HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcc
Confidence 11 1122334444 4567777777765321 1111 23566666665
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.26 E-value=0.69 Score=23.97 Aligned_cols=7 Identities=43% Similarity=0.786 Sum_probs=2.1
Q ss_pred CEEEeeC
Q 038338 221 EILNLAD 227 (421)
Q Consensus 221 ~~L~l~~ 227 (421)
++|++++
T Consensus 5 ~~L~l~~ 11 (24)
T PF13516_consen 5 ETLDLSN 11 (24)
T ss_dssp SEEE-TS
T ss_pred CEEEccC
Confidence 3333333
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.11 E-value=3.6 Score=21.98 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=9.8
Q ss_pred CCCCEEEeeCCCCccc
Q 038338 218 KKLEILNLADSNIEQL 233 (421)
Q Consensus 218 ~~L~~L~l~~~~l~~l 233 (421)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.61 E-value=3.6 Score=40.08 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=41.6
Q ss_pred cCCceEEEEEcCCccchhhhhh-chhhhceeEEEcCCcccccccchhHHHHh-hhcccEEEeccccCccccccccc----
Q 038338 320 VELQRYRIRIGDKLEYEIDQLL-VKSEALRLMMLKGLEKVSILQENDGTKML-LQRTEDLWLVKLEGVQNVVHELD---- 393 (421)
Q Consensus 320 ~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~---- 393 (421)
+.+..++++.+........+.+ ..-|+|+.|+|++|. .......++.+. ...|++|.+.+|+..+.....-.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~--~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNH--SKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccch--hhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 4555555553333322222222 234788888888872 111222222221 25678888888877644321100
Q ss_pred ccCCCCCccEEE
Q 038338 394 DGEGFPRLKHLH 405 (421)
Q Consensus 394 ~~~~~~~L~~L~ 405 (421)
-.+.||+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 023677777665
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.94 E-value=9.1 Score=20.67 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=8.4
Q ss_pred CCccEEEccCCCCC
Q 038338 173 EELKVLSLIGIHFS 186 (421)
Q Consensus 173 ~~L~~L~l~~~~~~ 186 (421)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.60 E-value=18 Score=35.55 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=42.9
Q ss_pred CCCCCEEEEEecCccccC---Ccc-cccCCceEEEEEcCCccchhhhhhch--hhhceeEEEcCCcccccccchh----H
Q 038338 297 LTKLTTLEIEVRDAEILL---PDF-VSVELQRYRIRIGDKLEYEIDQLLVK--SEALRLMMLKGLEKVSILQEND----G 366 (421)
Q Consensus 297 l~~L~~L~l~~~~~~~~~---~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~----~ 366 (421)
.+.+..+.++.|.+..+. ... ..|+|..|+|+.+..+.. ...++.+ ...|+.|-+.||.++....... .
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 344555555555543222 111 236667777654311111 0111222 2457888888888766655443 3
Q ss_pred HHHhhhcccEEEec
Q 038338 367 TKMLLQRTEDLWLV 380 (421)
Q Consensus 367 ~~~~~~~L~~L~l~ 380 (421)
+...||+|..|+=.
T Consensus 296 i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 296 IRELFPKLLRLDGV 309 (585)
T ss_pred HHHhcchheeecCc
Confidence 55578888887643
No 92
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=36.28 E-value=20 Score=35.03 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.8
Q ss_pred hhhccCchHHHHHHHH
Q 038338 12 SYDFLRSEEAKSMFRL 27 (421)
Q Consensus 12 SY~~L~~~~lk~cfl~ 27 (421)
||++|.. |.|.|+||
T Consensus 7 Sl~~LS~-EEkecLlF 21 (497)
T PF15385_consen 7 SLDYLSA-EEKECLLF 21 (497)
T ss_pred cccccch-hhHHHHHH
Confidence 8999995 79999998
No 93
>PF14162 YozD: YozD-like protein
Probab=33.08 E-value=58 Score=20.49 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=19.3
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHHhcccc
Q 038338 43 LRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLL 78 (421)
Q Consensus 43 i~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 78 (421)
....+..||++.....++.++. -|+-|+.++++
T Consensus 18 y~eL~kRGyvP~e~El~eiADI---tFeYll~K~iI 50 (57)
T PF14162_consen 18 YHELVKRGYVPTEEELEEIADI---TFEYLLEKCII 50 (57)
T ss_pred HHHHHHccCCCcHHHHHHHHHH---HHHHHHHHHhh
Confidence 3456667888765444444444 45556666665
Done!