Query 038338
Match_columns 421
No_of_seqs 254 out of 3624
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 17:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 3.3E-25 1.1E-29 206.9 23.4 194 116-328 57-251 (347)
2 3v47_A TOLL-like receptor 5B a 99.9 1E-25 3.5E-30 218.2 19.9 286 114-410 21-406 (455)
3 3rgz_A Protein brassinosteroid 99.9 8.6E-26 2.9E-30 232.2 20.0 247 146-410 393-715 (768)
4 4fmz_A Internalin; leucine ric 99.9 9.9E-25 3.4E-29 203.6 23.9 268 114-410 77-344 (347)
5 4fcg_A Uncharacterized protein 99.9 1.2E-25 4.1E-30 207.8 16.0 222 172-409 80-311 (328)
6 2id5_A Lingo-1, leucine rich r 99.9 9.7E-25 3.3E-29 212.6 22.6 221 124-356 31-259 (477)
7 2id5_A Lingo-1, leucine rich r 99.9 7.9E-25 2.7E-29 213.2 20.0 273 120-410 51-331 (477)
8 1ogq_A PGIP-2, polygalacturona 99.9 9.5E-26 3.3E-30 207.1 11.6 247 125-414 50-306 (313)
9 3rgz_A Protein brassinosteroid 99.9 2.4E-25 8.2E-30 228.9 15.7 279 120-416 242-555 (768)
10 1ogq_A PGIP-2, polygalacturona 99.9 1E-25 3.5E-30 207.0 11.6 226 119-385 70-304 (313)
11 4eco_A Uncharacterized protein 99.9 2.2E-25 7.6E-30 224.2 15.0 280 123-417 247-583 (636)
12 4ecn_A Leucine-rich repeat pro 99.9 1.1E-24 3.8E-29 223.4 19.4 283 120-417 443-823 (876)
13 4eco_A Uncharacterized protein 99.9 8.8E-25 3E-29 219.8 14.6 266 129-409 210-546 (636)
14 3o6n_A APL1; leucine-rich repe 99.9 6.6E-24 2.3E-28 201.3 19.6 260 122-410 66-350 (390)
15 4ecn_A Leucine-rich repeat pro 99.9 4.2E-24 1.4E-28 219.2 19.2 281 120-415 510-842 (876)
16 2z80_A TOLL-like receptor 2, v 99.9 3.5E-24 1.2E-28 200.3 16.7 268 127-410 33-312 (353)
17 1o6v_A Internalin A; bacterial 99.9 3.5E-23 1.2E-27 200.8 23.3 276 117-415 60-368 (466)
18 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-23 4.4E-28 210.8 20.9 129 123-253 30-165 (606)
19 3v47_A TOLL-like receptor 5B a 99.9 8.9E-24 3E-28 204.6 18.8 278 128-417 13-388 (455)
20 3t6q_A CD180 antigen; protein- 99.9 4.8E-24 1.6E-28 214.0 17.5 271 122-410 275-558 (606)
21 2z7x_B TOLL-like receptor 1, v 99.9 2.7E-23 9.2E-28 204.7 21.5 123 125-253 21-150 (520)
22 2z81_A CD282 antigen, TOLL-lik 99.9 9.7E-24 3.3E-28 209.2 18.2 284 122-415 47-425 (549)
23 3oja_B Anopheles plasmodium-re 99.9 1.7E-23 5.8E-28 209.2 19.0 266 123-410 73-356 (597)
24 3t6q_A CD180 antigen; protein- 99.9 2.6E-23 8.8E-28 208.7 19.7 213 198-416 256-492 (606)
25 1o6v_A Internalin A; bacterial 99.9 1.6E-22 5.4E-27 196.3 24.6 263 121-414 108-389 (466)
26 3o6n_A APL1; leucine-rich repe 99.9 1.3E-23 4.3E-28 199.3 16.4 278 122-415 42-333 (390)
27 4fcg_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 193.8 16.0 217 124-354 80-310 (328)
28 1xku_A Decorin; proteoglycan, 99.9 6.1E-23 2.1E-27 190.1 18.8 266 125-411 31-305 (330)
29 1xku_A Decorin; proteoglycan, 99.9 9.5E-23 3.2E-27 188.8 20.0 264 123-409 50-329 (330)
30 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-23 8.5E-28 200.7 16.5 147 121-280 38-184 (457)
31 2ft3_A Biglycan; proteoglycan, 99.9 2.4E-23 8.2E-28 192.9 15.3 263 124-410 53-331 (332)
32 3oja_B Anopheles plasmodium-re 99.9 2.2E-23 7.4E-28 208.4 15.8 273 123-410 49-335 (597)
33 3j0a_A TOLL-like receptor 5; m 99.9 7.1E-23 2.4E-27 212.7 20.1 287 112-409 13-372 (844)
34 3vq2_A TLR4, TOLL-like recepto 99.9 2E-23 6.7E-28 209.5 15.4 271 119-411 279-557 (606)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-22 4.2E-27 201.7 20.8 106 294-410 399-508 (562)
36 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-22 4.6E-27 199.7 20.5 155 238-410 321-479 (520)
37 2z63_A TOLL-like receptor 4, v 99.9 6.6E-23 2.3E-27 204.1 18.5 156 123-281 26-192 (570)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-22 4.9E-27 201.3 20.4 123 125-253 52-181 (562)
39 1ozn_A Reticulon 4 receptor; N 99.9 8.7E-23 3E-27 185.0 16.8 264 128-409 14-284 (285)
40 2ft3_A Biglycan; proteoglycan, 99.9 8.1E-23 2.8E-27 189.4 16.6 264 126-411 34-306 (332)
41 2z66_A Variable lymphocyte rec 99.9 7E-23 2.4E-27 187.6 14.2 244 128-385 10-261 (306)
42 2z80_A TOLL-like receptor 2, v 99.9 1.7E-22 6E-27 188.8 16.7 259 114-388 42-317 (353)
43 2z63_A TOLL-like receptor 4, v 99.9 6.8E-23 2.3E-27 204.1 14.7 143 262-410 369-529 (570)
44 2z66_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 185.6 15.1 258 123-392 26-294 (306)
45 3zyi_A Leucine-rich repeat-con 99.9 2.4E-22 8.1E-27 194.2 17.4 242 126-384 55-302 (452)
46 3zyj_A Leucine-rich repeat-con 99.9 2.6E-22 9.1E-27 193.2 17.6 218 125-356 64-290 (440)
47 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-22 7.4E-27 194.1 17.0 184 118-328 57-241 (457)
48 3zyi_A Leucine-rich repeat-con 99.9 2.7E-22 9.3E-27 193.8 17.6 224 123-360 73-305 (452)
49 1ziw_A TOLL-like receptor 3; i 99.9 2.3E-22 7.7E-27 204.5 17.4 275 124-415 24-344 (680)
50 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-22 9.6E-27 198.7 16.5 188 114-313 16-211 (549)
51 3zyj_A Leucine-rich repeat-con 99.9 4.3E-22 1.5E-26 191.7 16.9 242 126-384 44-291 (440)
52 3j0a_A TOLL-like receptor 5; m 99.9 6.6E-22 2.3E-26 205.4 18.4 277 128-416 7-354 (844)
53 1ziw_A TOLL-like receptor 3; i 99.9 6.3E-22 2.2E-26 201.2 17.9 274 120-409 44-363 (680)
54 3o53_A Protein LRIM1, AGAP0063 99.9 5.6E-24 1.9E-28 195.8 1.2 265 122-413 31-300 (317)
55 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-22 5.6E-27 186.0 8.5 262 127-415 12-278 (317)
56 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-21 1.4E-25 173.9 16.0 219 150-386 14-239 (285)
57 4g8a_A TOLL-like receptor 4; l 99.9 7.7E-21 2.6E-25 191.5 17.5 126 124-251 51-183 (635)
58 3oja_A Leucine-rich immune mol 99.9 1.8E-22 6.2E-27 196.3 4.3 236 123-382 32-272 (487)
59 1wwl_A Monocyte differentiatio 99.8 1.9E-21 6.7E-26 178.4 8.6 244 125-384 43-308 (312)
60 4g8a_A TOLL-like receptor 4; l 99.8 5.3E-20 1.8E-24 185.4 19.0 112 120-233 71-188 (635)
61 3g06_A SSPH2 (leucine-rich rep 99.8 4.6E-19 1.6E-23 176.1 25.3 234 125-410 61-295 (622)
62 2z62_A TOLL-like receptor 4, v 99.8 6E-20 2E-24 165.5 16.1 221 131-361 13-240 (276)
63 3oja_A Leucine-rich immune mol 99.8 4.9E-21 1.7E-25 186.2 9.6 236 145-407 32-270 (487)
64 1wwl_A Monocyte differentiatio 99.8 8.6E-22 3E-26 180.7 3.1 240 146-410 42-307 (312)
65 1jl5_A Outer protein YOPM; leu 99.8 4.6E-19 1.6E-23 170.7 20.9 242 125-410 111-368 (454)
66 1p9a_G Platelet glycoprotein I 99.8 2E-19 6.9E-24 162.9 17.3 195 121-328 6-203 (290)
67 1h6u_A Internalin H; cell adhe 99.8 4.5E-19 1.5E-23 162.2 18.7 191 121-330 37-227 (308)
68 2o6q_A Variable lymphocyte rec 99.8 7E-19 2.4E-23 157.9 17.8 179 125-315 16-198 (270)
69 1jl5_A Outer protein YOPM; leu 99.8 1.7E-18 5.9E-23 166.7 21.4 250 124-416 90-353 (454)
70 1h6u_A Internalin H; cell adhe 99.8 3.1E-19 1.1E-23 163.2 15.3 193 143-357 37-229 (308)
71 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-18 5.9E-23 172.0 21.4 237 126-417 41-278 (622)
72 1z7x_W Ribonuclease inhibitor; 99.8 7E-21 2.4E-25 184.5 3.3 233 170-409 110-380 (461)
73 3rfs_A Internalin B, repeat mo 99.8 3.5E-19 1.2E-23 160.0 14.0 184 131-328 25-213 (272)
74 3rfs_A Internalin B, repeat mo 99.8 3.1E-19 1.1E-23 160.3 13.6 207 120-345 36-246 (272)
75 2o6q_A Variable lymphocyte rec 99.8 1.1E-18 3.7E-23 156.6 15.8 199 147-360 16-220 (270)
76 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-20 5.2E-25 182.1 3.9 275 126-410 86-409 (461)
77 1p9a_G Platelet glycoprotein I 99.8 9.1E-19 3.1E-23 158.6 15.1 200 144-359 7-209 (290)
78 2z62_A TOLL-like receptor 4, v 99.8 1.7E-18 5.8E-23 155.9 15.0 207 162-384 20-236 (276)
79 2xwt_C Thyrotropin receptor; s 99.8 1.4E-18 4.9E-23 152.9 13.3 191 124-327 30-233 (239)
80 2ast_B S-phase kinase-associat 99.8 1.4E-19 4.8E-24 167.9 6.7 248 126-392 48-313 (336)
81 1h6t_A Internalin B; cell adhe 99.8 9.9E-18 3.4E-22 151.9 17.8 177 120-315 41-217 (291)
82 2ca6_A RAN GTPase-activating p 99.8 4E-19 1.4E-23 168.0 8.1 257 121-382 28-340 (386)
83 4glp_A Monocyte differentiatio 99.8 4.1E-19 1.4E-23 162.7 7.6 198 172-384 90-306 (310)
84 2xwt_C Thyrotropin receptor; s 99.8 1.7E-18 6E-23 152.4 11.2 204 137-383 23-237 (239)
85 2ast_B S-phase kinase-associat 99.8 6.7E-19 2.3E-23 163.3 8.9 249 148-418 48-311 (336)
86 3m19_A Variable lymphocyte rec 99.8 1.3E-17 4.3E-22 148.0 16.1 176 125-312 14-193 (251)
87 2ca6_A RAN GTPase-activating p 99.8 4.3E-19 1.5E-23 167.8 6.1 264 138-410 22-341 (386)
88 3ogk_B Coronatine-insensitive 99.7 3.8E-18 1.3E-22 170.5 10.7 82 123-205 162-252 (592)
89 3ogk_B Coronatine-insensitive 99.7 8.6E-18 2.9E-22 168.0 12.1 271 123-410 190-524 (592)
90 1h6t_A Internalin B; cell adhe 99.7 8.4E-17 2.9E-21 145.8 15.5 181 132-331 31-211 (291)
91 3m19_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 141.7 16.0 172 149-357 16-191 (251)
92 1m9s_A Internalin B; cell inva 99.7 6.8E-17 2.3E-21 160.3 15.5 177 120-315 38-214 (605)
93 4ay9_X Follicle-stimulating ho 99.7 5.8E-17 2E-21 151.0 13.1 236 129-408 13-255 (350)
94 3goz_A Leucine-rich repeat-con 99.7 1.2E-17 4E-22 156.5 7.3 250 130-387 3-299 (362)
95 2p1m_B Transport inhibitor res 99.7 1E-16 3.6E-21 160.1 13.6 273 123-411 154-518 (594)
96 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.4E-21 134.5 13.3 147 123-277 42-192 (197)
97 4glp_A Monocyte differentiatio 99.7 7.9E-17 2.7E-21 147.5 10.9 220 125-358 64-307 (310)
98 4ezg_A Putative uncharacterize 99.7 3.2E-16 1.1E-20 133.5 12.4 150 145-311 42-194 (197)
99 3goz_A Leucine-rich repeat-con 99.7 1.4E-17 4.9E-22 155.9 3.7 233 122-360 19-299 (362)
100 3cvr_A Invasion plasmid antige 99.7 1.5E-15 5.1E-20 149.1 16.9 194 125-346 59-255 (571)
101 1m9s_A Internalin B; cell inva 99.7 3E-16 1E-20 155.7 12.1 182 130-330 26-207 (605)
102 3cvr_A Invasion plasmid antige 99.7 1.4E-15 4.8E-20 149.3 16.1 187 147-370 59-253 (571)
103 1xeu_A Internalin C; cellular 99.7 8.5E-16 2.9E-20 137.0 13.0 170 125-314 19-188 (263)
104 3e6j_A Variable lymphocyte rec 99.7 2.6E-15 9E-20 130.9 15.7 151 127-281 21-174 (229)
105 2o6s_A Variable lymphocyte rec 99.7 5.6E-16 1.9E-20 133.2 11.2 170 128-316 10-184 (208)
106 2p1m_B Transport inhibitor res 99.6 1E-16 3.5E-21 160.2 6.9 127 123-249 103-243 (594)
107 4ay9_X Follicle-stimulating ho 99.6 1.8E-15 6.2E-20 140.8 13.3 221 176-417 12-241 (350)
108 1xeu_A Internalin C; cellular 99.6 2.4E-15 8E-20 134.1 13.2 154 119-282 35-188 (263)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 3.4E-15 1.2E-19 129.4 13.8 149 128-279 14-166 (220)
110 2v9t_B SLIT homolog 2 protein 99.6 4.8E-15 1.6E-19 128.4 13.6 147 128-278 14-164 (220)
111 2o6s_A Variable lymphocyte rec 99.6 1E-15 3.6E-20 131.5 9.4 129 172-309 27-159 (208)
112 2xot_A Amphoterin-induced prot 99.6 3.9E-15 1.3E-19 139.2 12.5 171 128-310 21-201 (361)
113 2v9t_B SLIT homolog 2 protein 99.6 4.9E-15 1.7E-19 128.3 12.3 147 150-310 14-164 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.6 7.6E-15 2.6E-19 127.1 12.9 148 150-311 14-166 (220)
115 2xot_A Amphoterin-induced prot 99.6 1.1E-14 3.9E-19 136.0 13.1 155 150-315 21-180 (361)
116 3e6j_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 125.4 13.1 148 149-311 21-172 (229)
117 2ell_A Acidic leucine-rich nuc 99.6 2.1E-14 7E-19 118.9 11.9 139 172-316 23-165 (168)
118 1dce_A Protein (RAB geranylger 99.6 4.4E-17 1.5E-21 160.7 -6.4 168 145-328 347-541 (567)
119 4b8c_D Glucose-repressible alc 99.5 2.2E-15 7.5E-20 153.1 5.7 155 124-283 172-333 (727)
120 1dce_A Protein (RAB geranylger 99.5 9.2E-17 3.1E-21 158.4 -5.9 196 170-378 346-566 (567)
121 2ell_A Acidic leucine-rich nuc 99.5 4.4E-14 1.5E-18 116.9 10.6 124 124-251 23-157 (168)
122 2je0_A Acidic leucine-rich nuc 99.5 7.8E-14 2.7E-18 112.9 9.8 122 124-249 16-148 (149)
123 2je0_A Acidic leucine-rich nuc 99.5 6.3E-14 2.2E-18 113.5 7.7 105 173-278 17-125 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4.2E-18 115.1 9.2 126 122-251 16-150 (176)
125 1w8a_A SLIT protein; signaling 99.5 2.9E-13 9.9E-18 114.5 10.5 123 150-278 11-138 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.4 2.3E-13 7.9E-18 113.5 9.4 105 172-278 18-125 (176)
127 4b8c_D Glucose-repressible alc 99.4 4.1E-14 1.4E-18 143.8 5.6 133 145-281 222-356 (727)
128 2wfh_A SLIT homolog 2 protein 99.4 7E-13 2.4E-17 112.2 12.1 103 174-277 32-137 (193)
129 2wfh_A SLIT homolog 2 protein 99.4 7.5E-13 2.6E-17 112.0 12.2 125 176-311 13-139 (193)
130 1w8a_A SLIT protein; signaling 99.4 5.2E-13 1.8E-17 112.9 10.9 124 128-254 11-139 (192)
131 2a5y_B CED-4; apoptosis; HET: 99.4 5.3E-14 1.8E-18 138.6 0.4 96 3-104 361-471 (549)
132 2o6r_A Variable lymphocyte rec 99.4 5.7E-12 2E-16 105.0 12.7 121 128-251 10-134 (177)
133 2o6r_A Variable lymphocyte rec 99.4 6.2E-12 2.1E-16 104.8 12.5 124 150-279 10-137 (177)
134 1ds9_A Outer arm dynein; leuci 99.4 1.8E-14 6.1E-19 122.7 -3.2 106 170-278 45-152 (198)
135 1ds9_A Outer arm dynein; leuci 99.3 2E-13 6.7E-18 116.2 -1.7 143 126-272 24-180 (198)
136 2r9u_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 99.1 11.1 101 176-279 15-118 (174)
137 3g39_A Variable lymphocyte rec 99.2 5.2E-11 1.8E-15 98.4 11.1 103 175-280 11-116 (170)
138 3sb4_A Hypothetical leucine ri 99.2 2.9E-11 9.9E-16 111.3 8.7 100 240-351 225-327 (329)
139 2r9u_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 96.6 10.3 101 128-231 15-118 (174)
140 3sb4_A Hypothetical leucine ri 99.2 1.2E-10 4.1E-15 107.2 10.7 199 164-379 84-328 (329)
141 3g39_A Variable lymphocyte rec 99.1 4.4E-10 1.5E-14 92.7 11.0 101 128-231 12-115 (170)
142 4fdw_A Leucine rich hypothetic 99.1 1.1E-09 3.8E-14 103.2 14.8 253 125-408 113-379 (401)
143 4fdw_A Leucine rich hypothetic 99.1 4E-09 1.4E-13 99.4 17.8 234 145-409 111-355 (401)
144 1vt4_I APAF-1 related killer D 99.0 3.1E-10 1.1E-14 115.5 7.5 84 3-98 353-437 (1221)
145 3un9_A NLR family member X1; l 99.0 7.7E-11 2.6E-15 110.0 2.8 127 124-251 71-221 (372)
146 3un9_A NLR family member X1; l 98.9 1.8E-10 6.1E-15 107.5 2.2 161 146-312 71-253 (372)
147 2ifg_A High affinity nerve gro 98.9 5.9E-09 2E-13 96.6 10.3 99 151-253 12-115 (347)
148 3sfz_A APAF-1, apoptotic pepti 98.8 3.2E-09 1.1E-13 115.0 7.8 89 3-104 362-452 (1249)
149 2ifg_A High affinity nerve gro 98.8 1.7E-08 6E-13 93.4 9.2 102 129-232 12-117 (347)
150 2ra8_A Uncharacterized protein 98.7 2.7E-08 9.3E-13 92.1 6.6 23 56-78 44-66 (362)
151 4fs7_A Uncharacterized protein 98.6 9.5E-07 3.3E-11 83.1 14.2 78 318-407 295-374 (394)
152 2ra8_A Uncharacterized protein 98.5 4.8E-07 1.6E-11 83.7 11.1 177 173-356 107-318 (362)
153 1z6t_A APAF-1, apoptotic prote 98.5 1.9E-07 6.3E-12 93.0 7.2 87 3-102 362-450 (591)
154 3e4g_A ATP synthase subunit S, 98.4 3.7E-07 1.3E-11 74.4 5.4 90 320-414 61-154 (176)
155 3e4g_A ATP synthase subunit S, 98.3 6.2E-07 2.1E-11 73.1 5.3 84 173-256 61-154 (176)
156 1io0_A Tropomodulin; LRR prote 98.3 7.7E-07 2.6E-11 74.2 5.4 80 169-248 32-128 (185)
157 1io0_A Tropomodulin; LRR prote 98.2 1.3E-06 4.5E-11 72.7 5.0 106 145-251 34-161 (185)
158 4fs7_A Uncharacterized protein 98.1 2E-05 6.8E-10 74.1 11.4 231 144-404 159-393 (394)
159 4gt6_A Cell surface protein; l 98.1 9.8E-05 3.3E-09 69.3 16.0 265 126-408 65-366 (394)
160 4gt6_A Cell surface protein; l 98.1 9.7E-05 3.3E-09 69.3 15.5 257 120-407 82-386 (394)
161 3rw6_A Nuclear RNA export fact 98.0 1.1E-05 3.9E-10 70.7 6.8 77 195-272 169-257 (267)
162 3rw6_A Nuclear RNA export fact 97.9 2.2E-06 7.5E-11 75.3 1.8 77 171-247 168-257 (267)
163 4h09_A Hypothetical leucine ri 97.0 0.014 4.9E-07 54.0 14.4 54 147-205 113-167 (379)
164 4h09_A Hypothetical leucine ri 96.9 0.013 4.4E-07 54.3 12.9 124 169-305 213-340 (379)
165 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0041 1.4E-07 51.5 6.3 81 170-250 38-135 (197)
166 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0086 2.9E-07 49.6 4.1 112 193-309 38-168 (197)
167 3rfe_A Platelet glycoprotein I 95.1 0.037 1.3E-06 42.5 5.8 33 198-230 33-67 (130)
168 3rfe_A Platelet glycoprotein I 94.5 0.065 2.2E-06 41.1 5.7 33 243-276 33-65 (130)
169 2lz0_A Uncharacterized protein 22.1 92 0.0031 21.9 3.7 38 167-205 14-52 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.3e-25 Score=206.87 Aligned_cols=194 Identities=18% Similarity=0.174 Sum_probs=126.0
Q ss_pred ccccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcc
Q 038338 116 EKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRL 195 (421)
Q Consensus 116 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l 195 (421)
..++.+..++++++|++++|.+..++....+++|++|++++|.+ ..++. +..+++|++|++++|.+..++. +..+
T Consensus 57 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 57 ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred ccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hccC
Confidence 33445666778888888888877777666788888888888865 34432 5778888888888888777766 7777
Q ss_pred cCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338 196 INLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD 274 (421)
Q Consensus 196 ~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 274 (421)
++|++|++++|.... +..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|+++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAY 207 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECC
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecc
Confidence 888888888875444 5567777777777777777776654 6777777777777753 344443 5566666666666
Q ss_pred cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEE
Q 038338 275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIR 328 (421)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 328 (421)
+|.+..... +..+++|++|++++|.+..++....+++|+.|++.
T Consensus 208 ~n~l~~~~~----------~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 208 VNQITDITP----------VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG 251 (347)
T ss_dssp SSCCCCCGG----------GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred cCCCCCCch----------hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECC
Confidence 665544321 34444455555544444444432233444444443
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1e-25 Score=218.23 Aligned_cols=286 Identities=18% Similarity=0.176 Sum_probs=194.9
Q ss_pred CcccccccCccCCCeEEEcCCCCCccC-Cc-ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-Ch
Q 038338 114 DLEKKMEETIRKDPIAISLPQRNIQEL-PE-RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PS 190 (421)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~ 190 (421)
.+..+|. ..+++++|++++|.+..+ +. ..++++|++|++++|.. ...++...|.++++|++|++++|.+..+ |.
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChh
Confidence 3444444 447899999999988665 33 33899999999999986 5567666678899999999999998874 77
Q ss_pred hhhcccCCcEEEcccccCCC--ccc--ccCcCCCCEEEeeCCCCccc-chh-hcCCCCCCEEeccCCcCCcccchhhhc-
Q 038338 191 SLGRLINLQTLCLDWCQLED--VAA--IGQLKKLEILNLADSNIEQL-PLE-IGQLTGLRLLDLTNCWSLQVIAPNVIS- 263 (421)
Q Consensus 191 ~i~~l~~L~~L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~- 263 (421)
.++.+.+|++|++++|.+.+ +.. ++++++|++|++++|.+..+ |.. +..+++|++|++++|...+..+.. +.
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhc
Confidence 88999999999999999886 444 88899999999999998866 444 788999999999987544333322 22
Q ss_pred ---------------------------------CCCCCcEEEcccCCCCCccccC-------------------------
Q 038338 264 ---------------------------------KLSRLEELYMDNSFSGWEKVEG------------------------- 285 (421)
Q Consensus 264 ---------------------------------~l~~L~~L~l~~~~~~~~~~~~------------------------- 285 (421)
.+++|++|++++|.+....+..
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 2356777777777654321100
Q ss_pred --------------------------C----CCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCc
Q 038338 286 --------------------------G----SNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKL 333 (421)
Q Consensus 286 --------------------------~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~ 333 (421)
. .......++.+++|+.|++++|.+..++. .+ .+++|+.|+++.+ ..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l 335 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FL 335 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-cc
Confidence 0 00112345666777777777777665533 33 4477777777633 33
Q ss_pred cchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 334 EYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
....+..++.+++|+.|++++|.+. ...+.++..+ ++|++|++++|......+..+. .+++|+.|++++|+
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIR--ALGDQSFLGL-PNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNP 406 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCC--EECTTTTTTC-TTCCEEECCSSCCSCCCTTTTT---TCTTCCEEECCSSC
T ss_pred CCcChhHhcCcccCCEEECCCCccc--ccChhhcccc-ccccEEECCCCccccCCHhHhc---cCCcccEEEccCCC
Confidence 4344566777777777777777642 2234556665 7788888877765433233233 77788888887664
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=8.6e-26 Score=232.20 Aligned_cols=247 Identities=20% Similarity=0.148 Sum_probs=170.3
Q ss_pred CCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCcEEEcccccCCC--cccccCcCCCCE
Q 038338 146 CPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEI 222 (421)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~ 222 (421)
+++|+.|++++|.+ .+.+|..+ .++++|++|++++|.+.. +|..++.+++|++|++++|.+.. |..++.+++|++
T Consensus 393 ~~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNGF-TGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSEE-EEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCcc-ccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 45566666666654 33444443 667777777777776653 66667777777777777777664 666777777777
Q ss_pred EEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC
Q 038338 223 LNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT 301 (421)
Q Consensus 223 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 301 (421)
|++++|++. .+|..++.+++|++|++++|...+.+|.. ++.+++|++|++++|.+....+ ..++.+++|+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~ 541 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIP--------AELGDCRSLI 541 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECC--------GGGGGCTTCC
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCcCC--------HHHcCCCCCC
Confidence 777777766 56666777777777777776655566654 6677777777777776654443 5677777777
Q ss_pred EEEEEecCcc-ccCCcc---------------------------------------------------------------
Q 038338 302 TLEIEVRDAE-ILLPDF--------------------------------------------------------------- 317 (421)
Q Consensus 302 ~L~l~~~~~~-~~~~~~--------------------------------------------------------------- 317 (421)
.|++++|.+. .+|..+
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 7777777653 343321
Q ss_pred --------cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccc
Q 038338 318 --------VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVV 389 (421)
Q Consensus 318 --------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 389 (421)
.+++|+.|+++ .+.....+|..++.+++|+.|++++|.+ ...+|..++++ ++|++|++++|...+.+|
T Consensus 622 g~~~~~~~~l~~L~~LdLs-~N~l~g~ip~~l~~l~~L~~L~Ls~N~l--~g~ip~~l~~L-~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMS-YNMLSGYIPKEIGSMPYLFILNLGHNDI--SGSIPDEVGDL-RGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp EECCCSCSSSBCCCEEECC-SSCCBSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGC-TTCCEEECCSSCCEECCC
T ss_pred ccCchhhhccccccEEECc-CCcccccCCHHHhccccCCEEeCcCCcc--CCCCChHHhCC-CCCCEEECCCCcccCcCC
Confidence 12567777776 4455556778888888888888888873 44567777877 888888888888877888
Q ss_pred ccccccCCCCCccEEEEeecC
Q 038338 390 HELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 390 ~~~~~~~~~~~L~~L~i~~c~ 410 (421)
..+. ++++|++|++++|+
T Consensus 698 ~~l~---~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 698 QAMS---ALTMLTEIDLSNNN 715 (768)
T ss_dssp GGGG---GCCCCSEEECCSSE
T ss_pred hHHh---CCCCCCEEECcCCc
Confidence 7776 88888888888874
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=9.9e-25 Score=203.61 Aligned_cols=268 Identities=18% Similarity=0.160 Sum_probs=221.5
Q ss_pred CcccccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhh
Q 038338 114 DLEKKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLG 193 (421)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~ 193 (421)
.+...+.+..++++++|++++|.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.....+..+.
T Consensus 77 ~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~ 152 (347)
T 4fmz_A 77 QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI--SDISP--LANLTKMYSLNLGANHNLSDLSPLS 152 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCC--CCCGG--GTTCTTCCEEECTTCTTCCCCGGGT
T ss_pred ccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcc--cCchh--hccCCceeEEECCCCCCcccccchh
Confidence 3444455788999999999999998888777999999999999986 44554 5789999999999996655455599
Q ss_pred cccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338 194 RLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273 (421)
Q Consensus 194 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 273 (421)
.+++|++|++++|.+.....+..+++|++|++++|.+..++. +..+++|+++++++|. +...+. +..+++|++|++
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l 228 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITP--VANMTRLNSLKI 228 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEEC
T ss_pred hCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCch--hhcCCcCCEEEc
Confidence 999999999999998884449999999999999999998876 8899999999999964 445554 789999999999
Q ss_pred ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEc
Q 038338 274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK 353 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 353 (421)
++|.+.... .+..+++|++|++++|.+..++....+++|+.|+++.+..... +.+..+++|+.|+++
T Consensus 229 ~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 229 GNNKITDLS----------PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLN 295 (347)
T ss_dssp CSSCCCCCG----------GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECC
T ss_pred cCCccCCCc----------chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECc
Confidence 999877553 2788999999999999998876555679999999985543332 458899999999999
Q ss_pred CCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 354 GLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
+|.+ ....+..+..+ ++|++|++++|+.....+ +. .+++|+.|++++|+
T Consensus 296 ~n~l--~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~--~~---~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 296 NNQL--GNEDMEVIGGL-TNLTTLFLSQNHITDIRP--LA---SLSKMDSADFANQV 344 (347)
T ss_dssp SSCC--CGGGHHHHHTC-TTCSEEECCSSSCCCCGG--GG---GCTTCSEESSSCC-
T ss_pred CCcC--CCcChhHhhcc-ccCCEEEccCCccccccC--hh---hhhccceeehhhhc
Confidence 9884 33455667777 999999999998655444 44 89999999999985
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.2e-25 Score=207.76 Aligned_cols=222 Identities=20% Similarity=0.221 Sum_probs=162.6
Q ss_pred CCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccC
Q 038338 172 TEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTN 250 (421)
Q Consensus 172 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 250 (421)
..++++|+++++.++.+|..++.+.+|++|++++|.+.. |..++++++|++|++++|.+..+|..++.+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 466777777777777777777777777777777777666 6667777777777777777777777777777777777777
Q ss_pred CcCCcccchhh--------hcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccC
Q 038338 251 CWSLQVIAPNV--------ISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVE 321 (421)
Q Consensus 251 ~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~ 321 (421)
|...+.+|... ++.+++|++|++++|.+...+ ..++++++|++|++++|.+..+|..+ .+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---------~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---------ASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---------GGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---------HhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 66666666541 224788888888887766322 45777888888888888887777766 4488
Q ss_pred CceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCc
Q 038338 322 LQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRL 401 (421)
Q Consensus 322 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 401 (421)
|+.|+++.+.. ...+|..++.+++|+.|++++|.+ ....|.++..+ ++|++|++++|..++.+|..+. .+++|
T Consensus 231 L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~~--~~~~p~~~~~l-~~L~~L~L~~n~~~~~iP~~l~---~L~~L 303 (328)
T 4fcg_A 231 LEELDLRGCTA-LRNYPPIFGGRAPLKRLILKDCSN--LLTLPLDIHRL-TQLEKLDLRGCVNLSRLPSLIA---QLPAN 303 (328)
T ss_dssp CCEEECTTCTT-CCBCCCCTTCCCCCCEEECTTCTT--CCBCCTTGGGC-TTCCEEECTTCTTCCCCCGGGG---GSCTT
T ss_pred CCEEECcCCcc-hhhhHHHhcCCCCCCEEECCCCCc--hhhcchhhhcC-CCCCEEeCCCCCchhhccHHHh---hccCc
Confidence 88888864433 335677788888899999988873 44566667777 8899999999888888888777 88888
Q ss_pred cEEEEeec
Q 038338 402 KHLHVESC 409 (421)
Q Consensus 402 ~~L~i~~c 409 (421)
+.+.+...
T Consensus 304 ~~l~l~~~ 311 (328)
T 4fcg_A 304 CIILVPPH 311 (328)
T ss_dssp CEEECCGG
T ss_pred eEEeCCHH
Confidence 88887643
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.7e-25 Score=212.62 Aligned_cols=221 Identities=20% Similarity=0.203 Sum_probs=143.0
Q ss_pred cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcE
Q 038338 124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQT 200 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~ 200 (421)
..+++.|++++|.+..++. +.++++|+.|++++|.+ ..+....|.++++|++|++++|.++.+|.. +..+++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 4677888888888765542 33778888888888875 344333357788888888888888777654 677888888
Q ss_pred EEcccccCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338 201 LCLDWCQLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF 277 (421)
Q Consensus 201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 277 (421)
|++++|.+.. +..+.++++|++|++++|.+..+ |..+..+++|++|++++| .+..++...+..+++|+.|++++|.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc
Confidence 8888888776 56777888888888888877755 345777888888888875 4455665557778888888888777
Q ss_pred CCCccccCCCCcChhhhcCCCCCCEEEEEecCc-cccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCC
Q 038338 278 SGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA-EILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGL 355 (421)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 355 (421)
+..... ..+..+++|+.|++++|.. +.++... ...+|+.|++..+. +....+..+..+++|+.|++++|
T Consensus 188 i~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 188 INAIRD--------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CCEECT--------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSS
T ss_pred CcEeCh--------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCC
Confidence 665543 3455566666666665542 3333332 22455555554322 22112233445555555555554
Q ss_pred c
Q 038338 356 E 356 (421)
Q Consensus 356 ~ 356 (421)
.
T Consensus 259 ~ 259 (477)
T 2id5_A 259 P 259 (477)
T ss_dssp C
T ss_pred c
Confidence 4
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=7.9e-25 Score=213.22 Aligned_cols=273 Identities=19% Similarity=0.091 Sum_probs=221.4
Q ss_pred ccCccCCCeEEEcCCCCCccC-Cc-ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-Chhhhccc
Q 038338 120 EETIRKDPIAISLPQRNIQEL-PE-RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLI 196 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~ 196 (421)
.+..+++++.|++++|.+..+ +. +.++++|+.|++++|.+ ..++...|.++++|++|++++|.+..+ |..+..++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 467789999999999999665 33 33899999999999985 677777678999999999999999874 66789999
Q ss_pred CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338 197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273 (421)
Q Consensus 197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 273 (421)
+|++|++++|.+.. +..+.++++|++|++++|++..+|.. +..+++|+.|++++|. +..++...+..+++|+.|++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeC
Confidence 99999999999887 67899999999999999999988764 8899999999999964 45555555889999999999
Q ss_pred ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEE
Q 038338 274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMM 351 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 351 (421)
++|......+ .......+|++|++++|.+..+|... .+++|+.|+++.+ .+....+..+..+++|+.|+
T Consensus 208 ~~~~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 208 SHWPYLDTMT--------PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQ 278 (477)
T ss_dssp ECCTTCCEEC--------TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEE
T ss_pred CCCccccccC--------cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEE
Confidence 9976554433 33344459999999999999888543 5599999999744 44444556688999999999
Q ss_pred EcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 352 LKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
+++|.+.. ..+..+..+ ++|++|++++|......+..+. .+++|+.|++.+|+
T Consensus 279 L~~n~l~~--~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 279 LVGGQLAV--VEPYAFRGL-NYLRVLNVSGNQLTTLEESVFH---SVGNLETLILDSNP 331 (477)
T ss_dssp CCSSCCSE--ECTTTBTTC-TTCCEEECCSSCCSCCCGGGBS---CGGGCCEEECCSSC
T ss_pred CCCCccce--ECHHHhcCc-ccCCEEECCCCcCceeCHhHcC---CCcccCEEEccCCC
Confidence 99988533 335556666 9999999999976543344444 88999999999886
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=9.5e-26 Score=207.15 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=130.5
Q ss_pred CCCeEEEcCCCCCc---cCCccc-CCCCccEEEeee-cCCCCcccChHHhccCCCccEEEccCCCCC-CCChhhhcccCC
Q 038338 125 KDPIAISLPQRNIQ---ELPERL-QCPNLQLFLLFR-QGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLPSSLGRLINL 198 (421)
Q Consensus 125 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L 198 (421)
.+++.|+++++.+. .+|... ++++|++|++++ |.+ .+.+|..+ .++++|++|++++|.+. .+|..++.+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 34555555555552 344333 555555555553 443 33444442 45555555555555554 355555555555
Q ss_pred cEEEcccccCCC--cccccCcCCCCEEEeeCCCCc-ccchhhcCCC-CCCEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338 199 QTLCLDWCQLED--VAAIGQLKKLEILNLADSNIE-QLPLEIGQLT-GLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD 274 (421)
Q Consensus 199 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 274 (421)
++|++++|.+.. |..++++++|++|++++|.+. .+|..++.++ +|++|++++|...+..|.. ++.++ |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 555555555543 455555555555555555555 5555555554 5555555554433344433 44444 5555555
Q ss_pred cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcC
Q 038338 275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKG 354 (421)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 354 (421)
+|.+....+ ..++.+++|+.|++++|.+...+ +.+..+++|++|++++
T Consensus 206 ~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 206 RNMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDL------------------------GKVGLSKNLNGLDLRN 253 (313)
T ss_dssp SSEEEECCG--------GGCCTTSCCSEEECCSSEECCBG------------------------GGCCCCTTCCEEECCS
T ss_pred CCcccCcCC--------HHHhcCCCCCEEECCCCceeeec------------------------CcccccCCCCEEECcC
Confidence 554433322 34445555555555555443221 2244556666666666
Q ss_pred CcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceee
Q 038338 355 LEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVH 414 (421)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 414 (421)
|.+ ....|.++..+ ++|++|++++|...+.+|.. . .+++|+.+++.+++.+..
T Consensus 254 N~l--~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~-~---~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 254 NRI--YGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQG-G---NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp SCC--EECCCGGGGGC-TTCCEEECCSSEEEEECCCS-T---TGGGSCGGGTCSSSEEES
T ss_pred Ccc--cCcCChHHhcC-cCCCEEECcCCcccccCCCC-c---cccccChHHhcCCCCccC
Confidence 663 22345555555 66667777666665555542 2 666677777766665554
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2.4e-25 Score=228.90 Aligned_cols=279 Identities=19% Similarity=0.188 Sum_probs=177.6
Q ss_pred ccCccCCCeEEEcCCCCC-ccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccC
Q 038338 120 EETIRKDPIAISLPQRNI-QELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLIN 197 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~ 197 (421)
.+..+++++.|++++|.+ +.+|.. .+++|+.|++++|.+ .+.+|..++..+++|++|++++|.+.. +|..++.+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l-~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEE-EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCcc-CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 345556666666666665 233322 555555555555554 334444433333555555555555542 4555555555
Q ss_pred CcEEEcccccCCC--ccc-ccCcCCCCEEEeeCCCCc-ccchhhcC---------------------------CCCCCEE
Q 038338 198 LQTLCLDWCQLED--VAA-IGQLKKLEILNLADSNIE-QLPLEIGQ---------------------------LTGLRLL 246 (421)
Q Consensus 198 L~~L~l~~~~~~~--~~~-~~~l~~L~~L~l~~~~l~-~lp~~~~~---------------------------l~~L~~L 246 (421)
|++|++++|.+.+ |.. +.++++|++|++++|.+. .+|..+.. +++|++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 5555555555442 322 555555555555555444 44444443 4455555
Q ss_pred eccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc-ccCCcc-cccCCce
Q 038338 247 DLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-ILLPDF-VSVELQR 324 (421)
Q Consensus 247 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~ 324 (421)
++++|...+.+|.. ++.+++|++|++++|.+....+ ..++.+++|+.|++++|.+. .+|..+ .+++|+.
T Consensus 400 ~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 400 YLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIP--------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp ECCSSEEEEECCGG-GGGCTTCCEEECCSSEEESCCC--------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred ECCCCccccccCHH-HhcCCCCCEEECcCCcccCccc--------HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 55555444445544 6677777777777766554433 66788888888888888875 666666 4588999
Q ss_pred EEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEE
Q 038338 325 YRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHL 404 (421)
Q Consensus 325 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 404 (421)
|++.. +......|..+..+++|+.|++++|.+ ....|.+++.+ ++|++|++++|...+.+|..+. .+++|+.|
T Consensus 471 L~L~~-N~l~~~~p~~l~~l~~L~~L~L~~N~l--~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L 543 (768)
T 3rgz_A 471 LILDF-NDLTGEIPSGLSNCTNLNWISLSNNRL--TGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELG---DCRSLIWL 543 (768)
T ss_dssp EECCS-SCCCSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGG---GCTTCCEE
T ss_pred EEecC-CcccCcCCHHHhcCCCCCEEEccCCcc--CCcCChHHhcC-CCCCEEECCCCcccCcCCHHHc---CCCCCCEE
Confidence 99874 444446778888999999999999884 34567778887 8999999999988888888777 89999999
Q ss_pred EEeecCceeeec
Q 038338 405 HVESCYEIVHIV 416 (421)
Q Consensus 405 ~i~~c~~L~~l~ 416 (421)
++++|+--..++
T Consensus 544 ~Ls~N~l~g~ip 555 (768)
T 3rgz_A 544 DLNTNLFNGTIP 555 (768)
T ss_dssp ECCSSEEESBCC
T ss_pred ECCCCccCCcCC
Confidence 999886433443
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1e-25 Score=206.95 Aligned_cols=226 Identities=13% Similarity=0.155 Sum_probs=175.9
Q ss_pred cccCccCCCeEEEcCC-CCC-ccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCC-CCChhhhc
Q 038338 119 MEETIRKDPIAISLPQ-RNI-QELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLPSSLGR 194 (421)
Q Consensus 119 ~~~~~~~~l~~l~l~~-~~~-~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~ 194 (421)
..+..+++++.|++++ +.+ +.+|... ++++|+.|++++|.+ .+.+|..+ .++++|++|++++|.+. .+|..++.
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-EEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee-CCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHhc
Confidence 4677889999999995 776 5777555 999999999999997 55777764 88999999999999998 58999999
Q ss_pred ccCCcEEEcccccCCC--cccccCcC-CCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcE
Q 038338 195 LINLQTLCLDWCQLED--VAAIGQLK-KLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEE 270 (421)
Q Consensus 195 l~~L~~L~l~~~~~~~--~~~~~~l~-~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 270 (421)
+++|++|++++|.+.. |..+++++ +|++|++++|.+. .+|..+..++ |++|++++|...+..+. .++.+++|++
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 225 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQK 225 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSE
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCE
Confidence 9999999999999984 89999998 9999999999998 7888899987 99999999765555554 4899999999
Q ss_pred EEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc-ccCCcccccCCceEEEEEcCCccchhhhhhchhhhcee
Q 038338 271 LYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-ILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRL 349 (421)
Q Consensus 271 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 349 (421)
|++++|.+....+ .+..+++|++|++++|.+. .+|.. +..+++|+.
T Consensus 226 L~L~~N~l~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~p~~------------------------l~~l~~L~~ 272 (313)
T 1ogq_A 226 IHLAKNSLAFDLG---------KVGLSKNLNGLDLRNNRIYGTLPQG------------------------LTQLKFLHS 272 (313)
T ss_dssp EECCSSEECCBGG---------GCCCCTTCCEEECCSSCCEECCCGG------------------------GGGCTTCCE
T ss_pred EECCCCceeeecC---------cccccCCCCEEECcCCcccCcCChH------------------------HhcCcCCCE
Confidence 9999998765543 3677788999988888875 44433 444555555
Q ss_pred EEEcCCcccccccchhHHHHhhhcccEEEeccccCc
Q 038338 350 MMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGV 385 (421)
Q Consensus 350 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (421)
|++++|.+.. .+|.. ..+ ++|+.|++.+|+.+
T Consensus 273 L~Ls~N~l~~--~ip~~-~~l-~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 273 LNVSFNNLCG--EIPQG-GNL-QRFDVSAYANNKCL 304 (313)
T ss_dssp EECCSSEEEE--ECCCS-TTG-GGSCGGGTCSSSEE
T ss_pred EECcCCcccc--cCCCC-ccc-cccChHHhcCCCCc
Confidence 5555555322 22322 333 55666666655543
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.2e-25 Score=224.18 Aligned_cols=280 Identities=16% Similarity=0.108 Sum_probs=190.3
Q ss_pred ccCCCeEEEcCCCCC-ccCCccc-CCCCccEEEeeecC-CCCc-ccChHHhccC------CCccEEEccCCCCCCCCh--
Q 038338 123 IRKDPIAISLPQRNI-QELPERL-QCPNLQLFLLFRQG-YGPV-QISDLFFEGT------EELKVLSLIGIHFSSLPS-- 190 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~-~~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~lp~-- 190 (421)
.++++++|++++|.+ +.+|... ++++|+.|++++|. + .+ .+|..+ ..+ ++|++|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-SGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-CHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-ccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchh
Confidence 678888888888876 6677554 78888888888887 5 44 566655 444 788888888888888887
Q ss_pred hhhcccCCcEEEcccccCC-C-cccccCcCCCCEEEeeCCCCcccchhhcCCCC-CCEEeccCCcCCcccchhhhcCCC-
Q 038338 191 SLGRLINLQTLCLDWCQLE-D-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTG-LRLLDLTNCWSLQVIAPNVISKLS- 266 (421)
Q Consensus 191 ~i~~l~~L~~L~l~~~~~~-~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~- 266 (421)
.++.+++|++|++++|.+. . | .++++++|++|++++|.+..+|..+..+++ |++|++++|.. ..+|.. +..++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l-~~lp~~-~~~~~l 401 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNI-FDAKSV 401 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC-SSCCSC-CCTTCS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC-cccchh-hhhccc
Confidence 7888888888888888877 3 5 777777888888888777777777777777 77777777543 366653 44433
Q ss_pred -CCcEEEcccCCCCCcccc-C---------------------CCCcCh-hhhcCCCCCCEEEEEecCccccCCcccc--c
Q 038338 267 -RLEELYMDNSFSGWEKVE-G---------------------GSNASL-VELKRLTKLTTLEIEVRDAEILLPDFVS--V 320 (421)
Q Consensus 267 -~L~~L~l~~~~~~~~~~~-~---------------------~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~ 320 (421)
+|++|++++|.+....+. . ....+. ..+..+++|+.|++++|.+..+|..... .
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 666666666655443221 0 001111 2244577788888888877777765421 1
Q ss_pred -------CCceEEEEEcCCccchhhhhhc--hhhhceeEEEcCCcccccccchhHHHHhhhcccEEEec------cccCc
Q 038338 321 -------ELQRYRIRIGDKLEYEIDQLLV--KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLV------KLEGV 385 (421)
Q Consensus 321 -------~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~~ 385 (421)
+|+.|+++.+ .+. .+|..+. .+++|+.|++++|.+.. +|.++..+ ++|++|+++ +|...
T Consensus 482 ~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~---ip~~~~~l-~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFN-KLT-KLSDDFRATTLPYLVGIDLSYNSFSK---FPTQPLNS-STLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EECTTGGGCCEEECCSS-CCC-BCCGGGSTTTCTTCCEEECCSSCCSS---CCCGGGGC-SSCCEEECCSCBCTTCCBCC
T ss_pred ccccccCCccEEECcCC-cCC-ccChhhhhccCCCcCEEECCCCCCCC---cChhhhcC-CCCCEEECCCCcccccCccc
Confidence 7888888633 333 4666665 78888888888877532 56666666 888888884 34445
Q ss_pred ccccccccccCCCCCccEEEEeecCceeeecc
Q 038338 386 QNVVHELDDGEGFPRLKHLHVESCYEIVHIVG 417 (421)
Q Consensus 386 ~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 417 (421)
+.+|..+. ++++|+.|++++|. +.+++.
T Consensus 556 ~~~p~~l~---~l~~L~~L~Ls~N~-l~~ip~ 583 (636)
T 4eco_A 556 REWPEGIT---LCPSLTQLQIGSND-IRKVNE 583 (636)
T ss_dssp CCCCTTGG---GCSSCCEEECCSSC-CCBCCS
T ss_pred ccChHHHh---cCCCCCEEECCCCc-CCccCH
Confidence 66666665 77888888887774 455543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.1e-24 Score=223.38 Aligned_cols=283 Identities=16% Similarity=0.106 Sum_probs=162.7
Q ss_pred ccCccCCCeEEEcCCCCCcc------------------CCccc---CCCCccEEEeeecCCCCcccChHHhccCCCccEE
Q 038338 120 EETIRKDPIAISLPQRNIQE------------------LPERL---QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVL 178 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 178 (421)
.+..+++++.|++++|.+.. +|... ++++|+.|++++|.+ .+.+|..+ .++++|++|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l-~~L~~L~~L 520 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFL-YDLPELQSL 520 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGG-GGCSSCCEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHH-hCCCCCCEE
Confidence 35556667777777666644 55443 466677777766665 55555443 566666666
Q ss_pred EccCCC-CCC--CChhhhccc-------CCcEEEcccccCCC-cc--cccCcCCCCEEEeeCCCCcccchhhcCCCCCCE
Q 038338 179 SLIGIH-FSS--LPSSLGRLI-------NLQTLCLDWCQLED-VA--AIGQLKKLEILNLADSNIEQLPLEIGQLTGLRL 245 (421)
Q Consensus 179 ~l~~~~-~~~--lp~~i~~l~-------~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 245 (421)
++++|. ++. +|..++.+. +|++|++++|.+.. |. .++++++|++|++++|.+..+| .++.+++|++
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence 666665 543 555555544 56666666666555 54 5556666666666655555555 5555555555
Q ss_pred EeccCCcCCcccchhhhcCCCC-CcEEEcccCCCCCccccCC--------------------------------------
Q 038338 246 LDLTNCWSLQVIAPNVISKLSR-LEELYMDNSFSGWEKVEGG-------------------------------------- 286 (421)
Q Consensus 246 L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~-------------------------------------- 286 (421)
|++++|... .+|.. +..+++ |+.|++++|.+...+....
T Consensus 600 L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 600 LKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EECcCCccc-cchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 555554322 44443 444544 5555555544432211100
Q ss_pred -------CCcChhhh-cCCCCCCEEEEEecCccccCCcccc---------cCCceEEEEEcCCccchhhhhhc--hhhhc
Q 038338 287 -------SNASLVEL-KRLTKLTTLEIEVRDAEILLPDFVS---------VELQRYRIRIGDKLEYEIDQLLV--KSEAL 347 (421)
Q Consensus 287 -------~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~---------~~L~~L~l~~~~~~~~~~~~~~~--~l~~L 347 (421)
...+...+ ..+++|+.|++++|.+..+|..... ++|+.|+++.+ .+. .+|..+. .+++|
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC-CCCGGGSTTTCTTC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCc-cchHHhhhccCCCc
Confidence 00112222 3566777777777776666655421 16777777633 333 4566665 77888
Q ss_pred eeEEEcCCcccccccchhHHHHhhhcccEEEecc------ccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338 348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVK------LEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG 417 (421)
Q Consensus 348 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 417 (421)
+.|++++|.+.. +|..+..+ ++|+.|++++ |...+.+|..+. ++++|+.|++++|. +..++.
T Consensus 756 ~~L~Ls~N~L~~---lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~~ip~~l~---~L~~L~~L~Ls~N~-L~~Ip~ 823 (876)
T 4ecn_A 756 SNMDVSYNCFSS---FPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGIT---TCPSLIQLQIGSND-IRKVDE 823 (876)
T ss_dssp CEEECCSSCCSS---CCCGGGGC-TTCCEEECCCCBCTTCCBCCCCCCTTGG---GCSSCCEEECCSSC-CCBCCS
T ss_pred CEEEeCCCCCCc---cchhhhcC-CCCCEEECCCCCCcccccccccChHHHh---cCCCCCEEECCCCC-CCccCH
Confidence 888888877533 45566666 7788887765 444455665555 67777777777774 455544
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=8.8e-25 Score=219.80 Aligned_cols=266 Identities=13% Similarity=0.140 Sum_probs=211.2
Q ss_pred EEEcCCCCCcc------------------CCccc---CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CC
Q 038338 129 AISLPQRNIQE------------------LPERL---QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FS 186 (421)
Q Consensus 129 ~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~ 186 (421)
.|++++|.+.. +|... ++++|+.|++++|.+ .+.+|..+ .++++|++|++++|. ++
T Consensus 210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFL-KALPEMQLINVACNRGIS 287 (636)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTT-TTCSSCCEEECTTCTTSC
T ss_pred EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHH-hcCCCCCEEECcCCCCCc
Confidence 46778888855 77654 599999999999998 77888765 889999999999998 87
Q ss_pred C--CChhhhcc------cCCcEEEcccccCCC-cc--cccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCC
Q 038338 187 S--LPSSLGRL------INLQTLCLDWCQLED-VA--AIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSL 254 (421)
Q Consensus 187 ~--lp~~i~~l------~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~ 254 (421)
. +|..++.+ ++|++|++++|.++. |. .++++++|++|++++|.+. .+| .++.+++|++|++++|. +
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l 365 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-I 365 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-E
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-c
Confidence 4 89988887 999999999999989 87 8999999999999999999 999 89999999999999975 4
Q ss_pred cccchhhhcCCCC-CcEEEcccCCCCCccccCCCC-----------------cChhhhc-------CCCCCCEEEEEecC
Q 038338 255 QVIAPNVISKLSR-LEELYMDNSFSGWEKVEGGSN-----------------ASLVELK-------RLTKLTTLEIEVRD 309 (421)
Q Consensus 255 ~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~-----------------~~~~~l~-------~l~~L~~L~l~~~~ 309 (421)
..+|.. ++.+++ |++|++++|.+...+...+.. ..+..++ .+++|+.|++++|.
T Consensus 366 ~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 366 TEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp EECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred ccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 488876 889999 999999999887544322110 1113344 56688888898888
Q ss_pred ccccCCcc--cccCCceEEEEEcCCccchhhhhhc--------hhhhceeEEEcCCcccccccchhHHH--HhhhcccEE
Q 038338 310 AEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLV--------KSEALRLMMLKGLEKVSILQENDGTK--MLLQRTEDL 377 (421)
Q Consensus 310 ~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~--------~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L 377 (421)
+..+|..+ .+++|+.|+++.+. .. .+|.... ++++|+.|++++|.+. .+|..+. .+ ++|++|
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~-l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~~~l-~~L~~L 518 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNM-LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT---KLSDDFRATTL-PYLVGI 518 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSC-CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC---BCCGGGSTTTC-TTCCEE
T ss_pred cCcCCHHHHccCCCCCEEECCCCC-CC-CcCHHHhccccccccccCCccEEECcCCcCC---ccChhhhhccC-CCcCEE
Confidence 88888765 35889999987443 33 3443322 2348999999998854 4666665 55 899999
Q ss_pred EeccccCcccccccccccCCCCCccEEEEeec
Q 038338 378 WLVKLEGVQNVVHELDDGEGFPRLKHLHVESC 409 (421)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c 409 (421)
++++|.... +|..+. ++++|+.|++++|
T Consensus 519 ~Ls~N~l~~-ip~~~~---~l~~L~~L~Ls~N 546 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPL---NSSTLKGFGIRNQ 546 (636)
T ss_dssp ECCSSCCSS-CCCGGG---GCSSCCEEECCSC
T ss_pred ECCCCCCCC-cChhhh---cCCCCCEEECCCC
Confidence 999988765 777666 8999999999653
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.6e-24 Score=201.26 Aligned_cols=260 Identities=17% Similarity=0.154 Sum_probs=150.7
Q ss_pred CccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCC
Q 038338 122 TIRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINL 198 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L 198 (421)
..+++++.|+++++.+..++. ...+++|+.|++++|.+ ..++...+.++++|++|++++|.++.+|.. ++.+++|
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 334555555555555544332 22555555555555553 333333345555555555555555555544 2555555
Q ss_pred cEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcC------------------Ccccc
Q 038338 199 QTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWS------------------LQVIA 258 (421)
Q Consensus 199 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~------------------~~~~~ 258 (421)
++|++++|.+.. +..++++++|++|++++|.++.++ +..+++|++|++++|.. +..++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 555555555544 334555555555555555555442 23344444444433211 11111
Q ss_pred hhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcccc-CCcc-cccCCceEEEEEcCCccch
Q 038338 259 PNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL-LPDF-VSVELQRYRIRIGDKLEYE 336 (421)
Q Consensus 259 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~ 336 (421)
. ...++|++|++++|.+... ..++.+++|++|++++|.+..+ |..+ .+++|+.|+++.+ ... .
T Consensus 222 ~---~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~ 286 (390)
T 3o6n_A 222 G---PVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLV-A 286 (390)
T ss_dssp C---CCCSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCC-E
T ss_pred c---cccccccEEECCCCCCccc----------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCc-c
Confidence 1 1122344444444433321 4578888999999999988765 4444 4589999999744 333 3
Q ss_pred hhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 337 IDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 337 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
++..+..+++|+.|++++|.+. ..+..+..+ ++|++|++++|... .++ ...+++|+.|++++|+
T Consensus 287 ~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~l-~~L~~L~L~~N~i~-~~~-----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 287 LNLYGQPIPTLKVLDLSHNHLL---HVERNQPQF-DRLENLYLDHNSIV-TLK-----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EECSSSCCTTCCEEECCSSCCC---CCGGGHHHH-TTCSEEECCSSCCC-CCC-----CCTTCCCSEEECCSSC
T ss_pred cCcccCCCCCCCEEECCCCcce---ecCcccccc-CcCCEEECCCCccc-eeC-----chhhccCCEEEcCCCC
Confidence 4555677899999999998743 456667776 99999999998864 333 3388999999999875
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=4.2e-24 Score=219.19 Aligned_cols=281 Identities=15% Similarity=0.148 Sum_probs=191.9
Q ss_pred ccCccCCCeEEEcCCCC-Cc--cCCcc--------cCCCCccEEEeeecCCCCcccCh-HHhccCCCccEEEccCCCCCC
Q 038338 120 EETIRKDPIAISLPQRN-IQ--ELPER--------LQCPNLQLFLLFRQGYGPVQISD-LFFEGTEELKVLSLIGIHFSS 187 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~-~~--~l~~~--------~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 187 (421)
.+..+++++.|++++|. +. .+|.. ..+++|+.|++++|.+ . .+|. ..+.++++|++|++++|.+..
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~-~ip~~~~l~~L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-E-EFPASASLQKMVKLGLLDCVHNKVRH 587 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-C-BCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-C-ccCChhhhhcCCCCCEEECCCCCccc
Confidence 45667777777777776 53 34432 2445777777777775 3 6665 234677777777777777776
Q ss_pred CChhhhcccCCcEEEcccccCCC-cccccCcCC-CCEEEeeCCCCcccchhhcCCC------------------------
Q 038338 188 LPSSLGRLINLQTLCLDWCQLED-VAAIGQLKK-LEILNLADSNIEQLPLEIGQLT------------------------ 241 (421)
Q Consensus 188 lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~-L~~L~l~~~~l~~lp~~~~~l~------------------------ 241 (421)
+| .++.+++|++|++++|.+.. |..+.++++ |+.|++++|.+..+|..+..++
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 77 67777777777777777666 666777777 7777777777666665544432
Q ss_pred -------CCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccC
Q 038338 242 -------GLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILL 314 (421)
Q Consensus 242 -------~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 314 (421)
+|++|++++|. +..+|...+..+++|+.|++++|.+...+.... ......++++++|+.|++++|.+..+|
T Consensus 667 l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-~~~~~~l~nl~~L~~L~Ls~N~L~~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSL-KPKDGNYKNTYLLTTIDLRFNKLTSLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS-SCTTSCCTTGGGCCEEECCSSCCCCCC
T ss_pred hccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHh-ccccccccccCCccEEECCCCCCccch
Confidence 45555555532 234555544567777777777777663332100 000011334559999999999999999
Q ss_pred Cccc---ccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc----ccccccchhHHHHhhhcccEEEeccccCccc
Q 038338 315 PDFV---SVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE----KVSILQENDGTKMLLQRTEDLWLVKLEGVQN 387 (421)
Q Consensus 315 ~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (421)
..+. +++|+.|+++.+ .+.. +|..+..+++|+.|++++|. .......|.++..+ ++|++|++++|.. +.
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-~~L~~L~Ls~N~L-~~ 820 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-PSLIQLQIGSNDI-RK 820 (876)
T ss_dssp GGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC-SSCCEEECCSSCC-CB
T ss_pred HHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC-CCCCEEECCCCCC-Cc
Confidence 8874 599999999844 4443 68889999999999998743 11344567788887 9999999999987 77
Q ss_pred ccccccccCCCCCccEEEEeecCceeee
Q 038338 388 VVHELDDGEGFPRLKHLHVESCYEIVHI 415 (421)
Q Consensus 388 ~~~~~~~~~~~~~L~~L~i~~c~~L~~l 415 (421)
+|..+ +++|+.|++++|+ +.++
T Consensus 821 Ip~~l-----~~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 821 VDEKL-----TPQLYILDIADNP-NISI 842 (876)
T ss_dssp CCSCC-----CSSSCEEECCSCT-TCEE
T ss_pred cCHhh-----cCCCCEEECCCCC-CCcc
Confidence 87654 3799999999996 4443
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=3.5e-24 Score=200.32 Aligned_cols=268 Identities=17% Similarity=0.155 Sum_probs=169.7
Q ss_pred CeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc
Q 038338 127 PIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW 205 (421)
Q Consensus 127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 205 (421)
....+.+++.+..+|... .++++.|++++|.+ ..++...+.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 33 ~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCSSCCTTC-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCcccccccc-cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 334566666666666533 24677777777764 445554456777777777777777664 44577777777777777
Q ss_pred ccCCC-ccc-ccCcCCCCEEEeeCCCCcccch--hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338 206 CQLED-VAA-IGQLKKLEILNLADSNIEQLPL--EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281 (421)
Q Consensus 206 ~~~~~-~~~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (421)
|.++. +.. ++++++|++|++++|++..+|. .+..+++|++|++++|..++.++...++.+++|++|++++|.+...
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 77776 433 6777777777777777777765 4667777777777776555666554467777777777777766654
Q ss_pred cccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhh---hhchhhhceeEEEcCCc
Q 038338 282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQ---LLVKSEALRLMMLKGLE 356 (421)
Q Consensus 282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~ 356 (421)
.+ ..++.+++|++|++++|.+..+|... .+++|+.|+++.+.... ..+. ....++.++.++++++.
T Consensus 190 ~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 190 EP--------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp CT--------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-CCCC------CCCCCCEEEEESCB
T ss_pred CH--------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-ccccccccccccchhhcccccccc
Confidence 33 45667777777777777776666544 24777777776433222 1111 12234556667777765
Q ss_pred cccc--ccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 357 KVSI--LQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 357 ~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
+... ..+|.++..+ ++|++|++++|... .++... ..++++|++|++++|+
T Consensus 261 l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~l~-~i~~~~--~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 261 ITDESLFQVMKLLNQI-SGLLELEFSRNQLK-SVPDGI--FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCHHHHHHHHHHHHTC-TTCCEEECCSSCCC-CCCTTT--TTTCTTCCEEECCSSC
T ss_pred ccCcchhhhHHHHhcc-cCCCEEECCCCCCC-ccCHHH--HhcCCCCCEEEeeCCC
Confidence 4221 1245556665 77888888777654 555442 1267888888887775
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3.5e-23 Score=200.84 Aligned_cols=276 Identities=19% Similarity=0.225 Sum_probs=145.5
Q ss_pred cccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhccc
Q 038338 117 KKMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLI 196 (421)
Q Consensus 117 ~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~ 196 (421)
.++.+..+++++.|++++|.+..++....+++|+.|++++|.+ ..++. +.++++|++|++++|.+..++. +..++
T Consensus 60 ~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 60 SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI--ADITP--LANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred cCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcc--ccChh--hcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 3445566677777777777776666555777777777777765 33333 4667777777777777766655 66677
Q ss_pred CCcEEEcccccCCCccc---------------------ccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCc
Q 038338 197 NLQTLCLDWCQLEDVAA---------------------IGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQ 255 (421)
Q Consensus 197 ~L~~L~l~~~~~~~~~~---------------------~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~ 255 (421)
+|++|++++|.+..... ++++++|++|++++|.+..++ .+..+++|++|++++|.. .
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~ 212 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI-S 212 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-C
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc-c
Confidence 77777777666555222 344455555555555555443 245555555555555432 2
Q ss_pred ccchhhhcCCCCCcEEEcccCCCCCccccC----------C--CCcChhhhcCCCCCCEEEEEecCccccCCcccccCCc
Q 038338 256 VIAPNVISKLSRLEELYMDNSFSGWEKVEG----------G--SNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQ 323 (421)
Q Consensus 256 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 323 (421)
..++ ++.+++|++|++++|.+.....-. . .-.....+..+++|+.|++++|.+..++....+++|+
T Consensus 213 ~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 290 (466)
T 1o6v_A 213 DITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALT 290 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred cccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccC
Confidence 2222 344555555555555443321100 0 0000011444445555555555544444422345555
Q ss_pred eEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccE
Q 038338 324 RYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKH 403 (421)
Q Consensus 324 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 403 (421)
.|++..+. ... .+ .+..+++|+.|++++|.+.... + +..+ ++|++|++++|.... ++ .+ .++++|+.
T Consensus 291 ~L~L~~n~-l~~-~~-~~~~l~~L~~L~L~~n~l~~~~--~--~~~l-~~L~~L~l~~n~l~~-~~-~l---~~l~~L~~ 357 (466)
T 1o6v_A 291 NLELNENQ-LED-IS-PISNLKNLTYLTLYFNNISDIS--P--VSSL-TKLQRLFFYNNKVSD-VS-SL---ANLTNINW 357 (466)
T ss_dssp EEECCSSC-CSC-CG-GGGGCTTCSEEECCSSCCSCCG--G--GGGC-TTCCEEECCSSCCCC-CG-GG---TTCTTCCE
T ss_pred eEEcCCCc-ccC-ch-hhcCCCCCCEEECcCCcCCCch--h--hccC-ccCCEeECCCCccCC-ch-hh---ccCCCCCE
Confidence 55554322 221 11 1555666666666665532211 1 3343 666666666664432 22 22 36777777
Q ss_pred EEEeecCceeee
Q 038338 404 LHVESCYEIVHI 415 (421)
Q Consensus 404 L~i~~c~~L~~l 415 (421)
|++++|+ +..+
T Consensus 358 L~l~~n~-l~~~ 368 (466)
T 1o6v_A 358 LSAGHNQ-ISDL 368 (466)
T ss_dssp EECCSSC-CCBC
T ss_pred EeCCCCc-cCcc
Confidence 7777763 4433
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.3e-23 Score=210.84 Aligned_cols=129 Identities=29% Similarity=0.325 Sum_probs=105.0
Q ss_pred ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCc
Q 038338 123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQ 199 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~ 199 (421)
..+++++|+++++.+..++. ..++++|++|++++|.+ ..++...|.++++|++|++++|.+..+ |..++.+++|+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 34788999999988866654 33888999999998875 455444458889999999999988875 77788899999
Q ss_pred EEEcccccCCC--cccccCcCCCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCCcC
Q 038338 200 TLCLDWCQLED--VAAIGQLKKLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNCWS 253 (421)
Q Consensus 200 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~ 253 (421)
+|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|..
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 99999998877 477889999999999999887 5788888999999999988643
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.9e-24 Score=204.56 Aligned_cols=278 Identities=17% Similarity=0.124 Sum_probs=195.0
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-C-ChhhhcccCCcEEEccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-L-PSSLGRLINLQTLCLDW 205 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-p~~i~~l~~L~~L~l~~ 205 (421)
+.++..++.+..+|. -.+++++|++++|.+ ..++...+.++++|++|++++|.+.. + +..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 356777777788887 337999999999986 44544445899999999999998863 4 56789999999999999
Q ss_pred ccCCC--cccccCcCCCCEEEeeCCCCcc-cchh--hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 206 CQLED--VAAIGQLKKLEILNLADSNIEQ-LPLE--IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
|.+.. |..++++++|++|++++|++.. .|.. +..+++|++|++++|...+..|...++.+++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 99887 7889999999999999999984 4544 88999999999999866555565557899999999999998765
Q ss_pred ccccCCCC--------------cC------------hhhhcCCC------------------------------------
Q 038338 281 EKVEGGSN--------------AS------------LVELKRLT------------------------------------ 298 (421)
Q Consensus 281 ~~~~~~~~--------------~~------------~~~l~~l~------------------------------------ 298 (421)
..+..-.. .. ...+..++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 54321000 00 00011223
Q ss_pred ---------------------------CCCEEEEEecCcccc-CCcc-cccCCceEEEEEcCCccchhhhhhchhhhcee
Q 038338 299 ---------------------------KLTTLEIEVRDAEIL-LPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRL 349 (421)
Q Consensus 299 ---------------------------~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 349 (421)
+|+.|++++|.+..+ |..+ .+++|+.|+++ .+......+..+..+++|+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECC-CCcccccChhHhcCcccCCE
Confidence 444455544444332 2223 34677777775 33333344556777778888
Q ss_pred EEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338 350 MMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG 417 (421)
Q Consensus 350 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 417 (421)
|++++|.+. ...+..+..+ ++|++|++++|......+..+. ++++|++|++++| +++++++
T Consensus 328 L~Ls~N~l~--~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 328 LNLSQNFLG--SIDSRMFENL-DKLEVLDLSYNHIRALGDQSFL---GLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp EECCSSCCC--EECGGGGTTC-TTCCEEECCSSCCCEECTTTTT---TCTTCCEEECCSS-CCSCCCT
T ss_pred EECCCCccC--CcChhHhcCc-ccCCEEECCCCcccccChhhcc---ccccccEEECCCC-ccccCCH
Confidence 888877642 2234455665 7888888888876555565555 7888888888886 4666543
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=4.8e-24 Score=213.97 Aligned_cols=271 Identities=17% Similarity=0.118 Sum_probs=145.4
Q ss_pred CccCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCC-CCCh-hhhcccCC
Q 038338 122 TIRKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFS-SLPS-SLGRLINL 198 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~l~~L 198 (421)
..+++++.|++++|.+..+|... .+++|+.|++++|.+ ..++...+..+++|++|++++|.+. .+|. .++.+++|
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF--ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC--SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCc--CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 34455555555555555554333 555555555555553 2222222355555555555555544 2332 25555555
Q ss_pred cEEEcccccCCC----cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338 199 QTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273 (421)
Q Consensus 199 ~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 273 (421)
++|++++|.+.. +..++++++|++|++++|++..+ |..+..+++|++|++++|...+..+...++.+++|++|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 555555555544 23455555566666655555533 3345555566666665544333333333455556666666
Q ss_pred ccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc--cC--Ccc-cccCCceEEEEEcCCccchhhhhhchhhhce
Q 038338 274 DNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI--LL--PDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALR 348 (421)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 348 (421)
++|.+....+ ..++.+++|++|++++|.+.+ ++ ..+ .+++|+.|+++.+ ......|..++.+++|+
T Consensus 433 ~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 433 SHSLLDISSE--------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TTCCCBTTCT--------TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CCCccCCcCH--------HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCC
Confidence 6555543332 445666667777766666542 22 122 3466677666532 33334455566667777
Q ss_pred eEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 349 LMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 349 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
.|++++|.+. ...+.++..+ +.| +|++++|......+..+. .+++|+.|++++||
T Consensus 504 ~L~Ls~N~l~--~~~~~~l~~l-~~L-~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 504 HVDLSHNRLT--SSSIEALSHL-KGI-YLNLASNHISIILPSLLP---ILSQQRTINLRQNP 558 (606)
T ss_dssp EEECCSSCCC--GGGGGGGTTC-CSC-EEECCSSCCCCCCGGGHH---HHHTSSEEECTTCC
T ss_pred EEECCCCccC--cCChhHhCcc-ccc-EEECcCCcccccCHhhcc---cCCCCCEEeCCCCC
Confidence 7777776632 2334455555 666 677777666544444444 66777777777665
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.7e-23 Score=204.65 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=91.9
Q ss_pred CCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338 125 KDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 202 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 202 (421)
+++++|++++|.+..++. ...+++|++|++++|.+ ..++...|.++++|++|++++|.++.+|.. .+.+|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 788888888888866652 33788888888888875 344333457788888888888888777765 778888888
Q ss_pred cccccCCC---cccccCcCCCCEEEeeCCCCcccchhhcCCCCC--CEEeccCCcC
Q 038338 203 LDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGL--RLLDLTNCWS 253 (421)
Q Consensus 203 l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~ 253 (421)
+++|.+.. |..++++++|++|++++|.+.. ..+..+++| ++|++++|..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 88888765 5778888888888888887765 346667777 8888887655
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=9.7e-24 Score=209.22 Aligned_cols=284 Identities=14% Similarity=0.099 Sum_probs=150.0
Q ss_pred CccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC--CChhhhcccC
Q 038338 122 TIRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS--LPSSLGRLIN 197 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~ 197 (421)
..++++++|++++|.+..++. ...+++|++|++++|.+ ..++...++++++|++|++++|.++. .|..++.+++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc--CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 444455555555555433331 12445555555555543 33333333455555555555555442 2334455555
Q ss_pred CcEEEccccc-CCC-c-ccccCcCCCCEEEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc
Q 038338 198 LQTLCLDWCQ-LED-V-AAIGQLKKLEILNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM 273 (421)
Q Consensus 198 L~~L~l~~~~-~~~-~-~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 273 (421)
|++|++++|. +.. + ..++++++|++|++++|++. ..|..++.+++|++|+++.|. ...++...++.+++|++|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEc
Confidence 5555555554 222 2 34555555555555555544 234445555555555555532 23344433456788888888
Q ss_pred ccCCCCCccc---cCCC------------C--------cChhh-------------------------------------
Q 038338 274 DNSFSGWEKV---EGGS------------N--------ASLVE------------------------------------- 293 (421)
Q Consensus 274 ~~~~~~~~~~---~~~~------------~--------~~~~~------------------------------------- 293 (421)
++|.+..... .... . .+...
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 8876655310 0000 0 00000
Q ss_pred ----------------------hcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhh---hhhchhhh
Q 038338 294 ----------------------LKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEID---QLLVKSEA 346 (421)
Q Consensus 294 ----------------------l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~ 346 (421)
....++|+.|++++|.+..+|..+ .+++|+.|+++.+. .....| ..++.+++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc-cccccccchhhhhcccc
Confidence 011245666666666666666665 35788888886433 333333 23667788
Q ss_pred ceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338 347 LRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI 415 (421)
Q Consensus 347 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l 415 (421)
|+.|++++|.+.........+..+ ++|++|++++|.. +.+|..+. .+++|++|++++|. +..+
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l-~~lp~~~~---~~~~L~~L~Ls~N~-l~~l 425 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTF-HPMPDSCQ---WPEKMRFLNLSSTG-IRVV 425 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCC-CCCCSCCC---CCTTCCEEECTTSC-CSCC
T ss_pred CcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCC-ccCChhhc---ccccccEEECCCCC-cccc
Confidence 888888887753321122335555 8889999988865 45665554 67788888887774 4443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-23 Score=209.19 Aligned_cols=266 Identities=16% Similarity=0.143 Sum_probs=151.8
Q ss_pred ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCc
Q 038338 123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQ 199 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~ 199 (421)
.+++++.|++++|.+..++. ...+++|+.|++++|.+ ..++...|+++++|++|++++|.++.+|.. ++.+++|+
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 34555555555555543332 22555555555555553 333333345555555555555555555443 35555555
Q ss_pred EEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338 200 TLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF 277 (421)
Q Consensus 200 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 277 (421)
+|++++|.+.. |..++++++|++|++++|.+..++ ++.+++|++|++++|.. .. +...++|+.|++++|.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l-~~-----l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL-ST-----LAIPIAVEELDASHNS 222 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC-SE-----EECCTTCSEEECCSSC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc-cc-----ccCCchhheeeccCCc
Confidence 55555555544 334555555555555555555443 23344444444443211 11 1122233333333333
Q ss_pred CCCccccCC-----------CCcChhhhcCCCCCCEEEEEecCcccc-CCcc-cccCCceEEEEEcCCccchhhhhhchh
Q 038338 278 SGWEKVEGG-----------SNASLVELKRLTKLTTLEIEVRDAEIL-LPDF-VSVELQRYRIRIGDKLEYEIDQLLVKS 344 (421)
Q Consensus 278 ~~~~~~~~~-----------~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l 344 (421)
+...+.... .-.....++.+++|+.|++++|.+..+ |..+ .+++|+.|+++.+ .+. .+|..+..+
T Consensus 223 l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l 300 (597)
T 3oja_B 223 INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLV-ALNLYGQPI 300 (597)
T ss_dssp CCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCC-EEECSSSCC
T ss_pred ccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCC-CCCcccccC
Confidence 222211100 001125578889999999999998755 4444 5589999999743 333 346667778
Q ss_pred hhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 345 EALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
++|+.|++++|.+. .+|.++..+ ++|++|++++|.... ++ ...+++|+.|++++|+
T Consensus 301 ~~L~~L~Ls~N~l~---~i~~~~~~l-~~L~~L~L~~N~l~~-~~-----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 301 PTLKVLDLSHNHLL---HVERNQPQF-DRLENLYLDHNSIVT-LK-----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCCEEECCSSCCC---CCGGGHHHH-TTCSEEECCSSCCCC-CC-----CCTTCCCSEEECCSSC
T ss_pred CCCcEEECCCCCCC---ccCcccccC-CCCCEEECCCCCCCC-cC-----hhhcCCCCEEEeeCCC
Confidence 99999999998753 466777777 999999999988643 32 3388999999999876
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2.6e-23 Score=208.65 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=112.6
Q ss_pred CcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338 198 LQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275 (421)
Q Consensus 198 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 275 (421)
|++|++++|.+.. +..++++++|++|++++|.++.+|.++..+++|++|++++|.. ..+++..++.+++|++|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC-SBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCc-CcCchhhhhccCcCCEEECCC
Confidence 3334444444333 2335555666666666666666666666666666666666433 233222245555555555555
Q ss_pred CCCCCccccC-------------CC------CcChhhhcCCCCCCEEEEEecCccccC-Ccc-cccCCceEEEEEcCCcc
Q 038338 276 SFSGWEKVEG-------------GS------NASLVELKRLTKLTTLEIEVRDAEILL-PDF-VSVELQRYRIRIGDKLE 334 (421)
Q Consensus 276 ~~~~~~~~~~-------------~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~ 334 (421)
|.+....+.. .. ......++.+++|++|++++|.+..++ ..+ .+++|+.|++..+....
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 5443221110 00 000234566666777777666664443 223 34667777765332222
Q ss_pred chhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccc-cccccccCCCCCccEEEEeecCcee
Q 038338 335 YEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNV-VHELDDGEGFPRLKHLHVESCYEIV 413 (421)
Q Consensus 335 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~i~~c~~L~ 413 (421)
...+..+..+++|+.|++++|.+. ...+..+..+ ++|++|++++|...+.. +.... ...+++|+.|++++| ++.
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~n-~l~ 489 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLD--ISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSFC-DLS 489 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCB--TTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTTS-CCC
T ss_pred cccchhhhCcccCCEEECCCCccC--CcCHHHHhCC-CCCCEEECCCCCCCccccccchh-hccCCCccEEECCCC-ccC
Confidence 112233667777777777776632 2234455555 78888888887765422 21111 337888888888887 455
Q ss_pred eec
Q 038338 414 HIV 416 (421)
Q Consensus 414 ~l~ 416 (421)
.+.
T Consensus 490 ~~~ 492 (606)
T 3t6q_A 490 SID 492 (606)
T ss_dssp EEC
T ss_pred ccC
Confidence 553
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.6e-22 Score=196.28 Aligned_cols=263 Identities=20% Similarity=0.195 Sum_probs=164.4
Q ss_pred cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccCh-------------------HHhccCCCccEEEcc
Q 038338 121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISD-------------------LFFEGTEELKVLSLI 181 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------~~~~~l~~L~~L~l~ 181 (421)
+..++++++|++++|.+..++....+++|+.|++++|.+ ..++. ..+.++++|++|+++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE--CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCcc--CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence 444455555555555554444444555555555555543 11111 002344455555555
Q ss_pred CCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhh
Q 038338 182 GIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNV 261 (421)
Q Consensus 182 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~ 261 (421)
+|.+..++. +..+++|++|++++|.+.....++.+++|++|++++|.+..++ .+..+++|++|++++|.. ...+.
T Consensus 186 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~-- 260 (466)
T 1o6v_A 186 SNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI-SNLAP-- 260 (466)
T ss_dssp SSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--
T ss_pred CCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcc-ccchh--
Confidence 555544432 4555555555555555555222555556666666666555543 355666666666666432 33333
Q ss_pred hcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhh
Q 038338 262 ISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLL 341 (421)
Q Consensus 262 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 341 (421)
+..+++|++|++++|.+... ..+..+++|+.|++++|.+..++....+++|+.|+++.+.. ....+ +
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l-~~~~~--~ 327 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNI----------SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-SDISP--V 327 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCC----------GGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC-SCCGG--G
T ss_pred hhcCCCCCEEECCCCccCcc----------ccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcC-CCchh--h
Confidence 55666666676666655543 22788999999999999998887755679999999985543 32222 7
Q ss_pred chhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceee
Q 038338 342 VKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVH 414 (421)
Q Consensus 342 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 414 (421)
..+++|+.|++++|.+... ..+..+ ++|++|++++|......| +. .+++|+.|++.+|+ +..
T Consensus 328 ~~l~~L~~L~l~~n~l~~~----~~l~~l-~~L~~L~l~~n~l~~~~~--~~---~l~~L~~L~l~~n~-~~~ 389 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV----SSLANL-TNINWLSAGHNQISDLTP--LA---NLTRITQLGLNDQA-WTN 389 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC----GGGTTC-TTCCEEECCSSCCCBCGG--GT---TCTTCCEEECCCEE-EEC
T ss_pred ccCccCCEeECCCCccCCc----hhhccC-CCCCEEeCCCCccCccch--hh---cCCCCCEEeccCCc-ccC
Confidence 8999999999999885432 356666 999999999998765554 44 89999999999984 444
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.3e-23 Score=199.30 Aligned_cols=278 Identities=17% Similarity=0.144 Sum_probs=196.7
Q ss_pred CccCCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCC
Q 038338 122 TIRKDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINL 198 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L 198 (421)
-.+.+++.+++.++.+..+|... .+++|++|++++|.+ ..++...|..+++|++|++++|.+..++ ..++.+++|
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 34689999999999998888643 889999999999985 5566555688999999999999998864 458899999
Q ss_pred cEEEcccccCCC-ccc-ccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338 199 QTLCLDWCQLED-VAA-IGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275 (421)
Q Consensus 199 ~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 275 (421)
++|++++|.+.. |.. ++++++|++|++++|.+..++. .+..+++|++|++++|. +..++ ++.+++|+.|++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccc
Confidence 999999999988 655 5899999999999999987754 58899999999999964 34443 45677777777777
Q ss_pred CCCCCccccCC-------CCcCh-hhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhc
Q 038338 276 SFSGWEKVEGG-------SNASL-VELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEAL 347 (421)
Q Consensus 276 ~~~~~~~~~~~-------~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 347 (421)
|.+........ ...+. ......++|+.|++++|.+...+....+++|+.|+++. +......|..+..+++|
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRL 274 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSC
T ss_pred ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCC-CcCCCcChhHccccccC
Confidence 76554321100 00000 00112356777777777776654333557788888863 33444456667778888
Q ss_pred eeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeee
Q 038338 348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHI 415 (421)
Q Consensus 348 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l 415 (421)
+.|++++|.+.. .+..+..+ ++|++|++++|.. ..++..+. .+++|+.|++++|+ +..+
T Consensus 275 ~~L~L~~n~l~~---~~~~~~~l-~~L~~L~L~~n~l-~~~~~~~~---~l~~L~~L~L~~N~-i~~~ 333 (390)
T 3o6n_A 275 ERLYISNNRLVA---LNLYGQPI-PTLKVLDLSHNHL-LHVERNQP---QFDRLENLYLDHNS-IVTL 333 (390)
T ss_dssp CEEECCSSCCCE---EECSSSCC-TTCCEEECCSSCC-CCCGGGHH---HHTTCSEEECCSSC-CCCC
T ss_pred CEEECCCCcCcc---cCcccCCC-CCCCEEECCCCcc-eecCcccc---ccCcCCEEECCCCc-ccee
Confidence 888888876432 23333344 7888888888754 45555454 67888888888774 4443
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.4e-23 Score=193.82 Aligned_cols=217 Identities=21% Similarity=0.288 Sum_probs=136.6
Q ss_pred cCCCeEEEcCCCCCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338 124 RKDPIAISLPQRNIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 202 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 202 (421)
..+++.|+++++.+..+|... ++++|+.|++++|.+ . .+|..+ .++++|++|++++|.+..+|..++.+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l-~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL-M-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC-C-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc-c-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 356777888877777776544 677788888877775 3 666554 667778888888777777777777777788888
Q ss_pred cccccCCC--ccccc---------CcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEE
Q 038338 203 LDWCQLED--VAAIG---------QLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEEL 271 (421)
Q Consensus 203 l~~~~~~~--~~~~~---------~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 271 (421)
+++|.... |..+. ++++|++|++++|+++.+|..++.+++|++|++++|. +..+|.. ++.+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEE
Confidence 77766443 55544 3777777777777777777777777777777777754 3455554 6777777777
Q ss_pred EcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCc-cccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhcee
Q 038338 272 YMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDA-EILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRL 349 (421)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 349 (421)
++++|.+....+ ..++.+++|+.|++++|.+ +.+|..+ .+++|+.|+++.+... ..+|..++.+++|+.
T Consensus 235 ~Ls~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 235 DLRGCTALRNYP--------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPANCI 305 (328)
T ss_dssp ECTTCTTCCBCC--------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC-CCCCGGGGGSCTTCE
T ss_pred ECcCCcchhhhH--------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch-hhccHHHhhccCceE
Confidence 777766554433 4466666677776666553 3444333 2244444444322221 233444444444444
Q ss_pred EEEcC
Q 038338 350 MMLKG 354 (421)
Q Consensus 350 L~l~~ 354 (421)
+.+..
T Consensus 306 l~l~~ 310 (328)
T 4fcg_A 306 ILVPP 310 (328)
T ss_dssp EECCG
T ss_pred EeCCH
Confidence 44433
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6.1e-23 Score=190.07 Aligned_cols=266 Identities=15% Similarity=0.154 Sum_probs=210.2
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCL 203 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l 203 (421)
.+++.++++++.+..+|... .++++.|++++|.+ ..++...+.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36788999998888887644 37899999999986 556665568999999999999999886 788999999999999
Q ss_pred ccccCCC-cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcccCCCCC
Q 038338 204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
++|.++. |..+. ++|++|++++|.+..++.. +..+++|++|++++|.... ......++.+++|++|++++|.+..
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 9999988 76655 7999999999999987664 8899999999999975532 1333348899999999999998876
Q ss_pred ccccCCCCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccc
Q 038338 281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV 358 (421)
Q Consensus 281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 358 (421)
.+. .+ .++|++|++++|.+..++. .+ .+++|+.|+++.+ ......+..+..+++|+.|++++|.+.
T Consensus 186 l~~---------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 186 IPQ---------GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CCS---------SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCc---------cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc
Confidence 543 12 2789999999999877643 34 5599999999744 444444557889999999999998854
Q ss_pred ccccchhHHHHhhhcccEEEeccccCcccccccccc---cCCCCCccEEEEeecCc
Q 038338 359 SILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDD---GEGFPRLKHLHVESCYE 411 (421)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~L~~L~i~~c~~ 411 (421)
.+|.++..+ ++|++|++++|......+..+.. ....+.|+.|++.++|-
T Consensus 254 ---~lp~~l~~l-~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 254 ---KVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp ---SCCTTTTTC-SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ---cCChhhccC-CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 566777777 99999999999865433333320 12358899999999973
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=9.5e-23 Score=188.79 Aligned_cols=264 Identities=14% Similarity=0.153 Sum_probs=207.9
Q ss_pred ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338 123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 200 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 200 (421)
..++++.|+++++.+..++. ..++++|++|++++|.+ ..+....+..+++|++|++++|.++.+|..+. .+|++
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQE 125 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC--CeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence 34789999999999977765 34899999999999986 44433345889999999999999999887665 79999
Q ss_pred EEcccccCCC--cccccCcCCCCEEEeeCCCCc---ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338 201 LCLDWCQLED--VAAIGQLKKLEILNLADSNIE---QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275 (421)
Q Consensus 201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 275 (421)
|++++|.+.. +..+.++++|++|++++|.+. ..+..+..+++|++|++++| .+..+|.. + .++|++|++++
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~--~~~L~~L~l~~ 201 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-L--PPSLTELHLDG 201 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-C--CTTCSEEECTT
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-c--cccCCEEECCC
Confidence 9999999988 567899999999999999886 44667899999999999996 45567764 2 38999999999
Q ss_pred CCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEc
Q 038338 276 SFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK 353 (421)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 353 (421)
|.+....+ ..++.+++|+.|++++|.+..++. .+ .+++|+.|+++.+ ... .+|..+..+++|+.|+++
T Consensus 202 n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 202 NKITKVDA--------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp SCCCEECT--------GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS-SCCTTTTTCSSCCEEECC
T ss_pred CcCCccCH--------HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCc-cCChhhccCCCcCEEECC
Confidence 98876654 678899999999999999987765 33 5599999999744 344 667889999999999999
Q ss_pred CCcccccccchhHHH-----HhhhcccEEEeccccCcc--cccccccccCCCCCccEEEEeec
Q 038338 354 GLEKVSILQENDGTK-----MLLQRTEDLWLVKLEGVQ--NVVHELDDGEGFPRLKHLHVESC 409 (421)
Q Consensus 354 ~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~i~~c 409 (421)
+|.+..... ..+. ...+.|+.|++.+|+... ..+..+. .+++|+.+++++|
T Consensus 272 ~N~i~~~~~--~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~---~~~~l~~l~L~~N 329 (330)
T 1xku_A 272 NNNISAIGS--NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR---CVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCCCCCT--TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT---TCCCGGGEEC---
T ss_pred CCcCCccCh--hhcCCcccccccccccceEeecCcccccccCccccc---cccceeEEEeccc
Confidence 998643211 1111 113789999999998642 2233444 7899999999876
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.5e-23 Score=200.68 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=94.2
Q ss_pred cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338 121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 200 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 200 (421)
+..+++++.|+++++.+..+|....+++|+.|++++|.+ ..++ ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 445566777777777666666555667777777777764 3333 356677777777777766654 666777777
Q ss_pred EEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 201 LCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 201 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
|++++|.++..+ ++++++|++|++++|+++.++ ++.+++|++|++++|...+.++ ++.+++|++|++++|.++.
T Consensus 111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 777777666621 666677777777777666653 5666677777776665555542 4566666666666665544
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=2.4e-23 Score=192.95 Aligned_cols=263 Identities=15% Similarity=0.165 Sum_probs=182.6
Q ss_pred cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEE
Q 038338 124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTL 201 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 201 (421)
.++++.|+++++.+..++. ..++++|+.|++++|.+ ..++...+.++++|++|++++|.+..+|..+. .+|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc--CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 4678888888888766643 33788888888888875 44434445778888888888888887777655 788888
Q ss_pred EcccccCCC-c-ccccCcCCCCEEEeeCCCCc---ccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338 202 CLDWCQLED-V-AAIGQLKKLEILNLADSNIE---QLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276 (421)
Q Consensus 202 ~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (421)
++++|.+.. + ..+.++++|++|++++|.++ ..|..+..+ +|++|++++|. +..+|.. + .++|++|++++|
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~-~--~~~L~~L~l~~n 203 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD-L--PETLNELHLDHN 203 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS-S--CSSCSCCBCCSS
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc-c--cCCCCEEECCCC
Confidence 888888777 3 45788888888888888775 334556666 88888888853 4556654 2 267888888888
Q ss_pred CCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcC
Q 038338 277 FSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKG 354 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 354 (421)
.+....+ ..+..+++|+.|++++|.+..++.. + .+++|+.|+++.+ .+. .+|..+..+++|+.|++++
T Consensus 204 ~i~~~~~--------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 204 KIQAIEL--------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLS-RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CCCCCCT--------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCC-BCCTTGGGCTTCCEEECCS
T ss_pred cCCccCH--------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCe-ecChhhhcCccCCEEECCC
Confidence 7776544 5677888888888888888777653 3 4588888888743 344 5677788888899999988
Q ss_pred CcccccccchhHHHHh-----hhcccEEEeccccCc--ccccccccccCCCCCccEEEEeecC
Q 038338 355 LEKVSILQENDGTKML-----LQRTEDLWLVKLEGV--QNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 355 ~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
|.+.... +..+... ++.|+.|++.+|+.. ...+..+. .+++|+.+++.+|.
T Consensus 274 N~l~~~~--~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~---~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 274 NNITKVG--VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR---CVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCCBCC--TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT---TBCCSTTEEC----
T ss_pred CCCCccC--hhHccccccccccccccceEeecCcccccccCccccc---ccchhhhhhccccc
Confidence 8753221 1112111 367888888888765 33334344 78888888888775
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.2e-23 Score=208.41 Aligned_cols=273 Identities=17% Similarity=0.140 Sum_probs=192.5
Q ss_pred ccCCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCc
Q 038338 123 IRKDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQ 199 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~ 199 (421)
.+.+++.+++.++.+..+|... .+++|++|++++|.+ ..++...|..+++|++|++++|.+..+|+ .++.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4678899999999888888654 789999999999986 45555456889999999999999988655 468999999
Q ss_pred EEEcccccCCC-ccc-ccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338 200 TLCLDWCQLED-VAA-IGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276 (421)
Q Consensus 200 ~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (421)
+|++++|.+.. |.. ++++++|++|++++|.+..+++ .++.+++|++|++++|. +..++ ++.+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccC
Confidence 99999999888 554 5899999999999999987655 58899999999999964 44444 467889999999998
Q ss_pred CCCCccccCC-------CCcChh-hhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhce
Q 038338 277 FSGWEKVEGG-------SNASLV-ELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALR 348 (421)
Q Consensus 277 ~~~~~~~~~~-------~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 348 (421)
.+........ ...+.. .-...++|+.|++++|.+...+....+++|+.|+++. +.+....|..++.+++|+
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSCC
T ss_pred ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCC-CccCCCCHHHhcCccCCC
Confidence 7765322110 000000 0011235666666666665543333557777777763 334444566677777777
Q ss_pred eEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 349 LMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 349 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
.|++++|.+.. .+..+..+ ++|++|++++|... .+|..+. .+++|+.|++++|+
T Consensus 282 ~L~Ls~N~l~~---l~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~~---~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 282 RLYISNNRLVA---LNLYGQPI-PTLKVLDLSHNHLL-HVERNQP---QFDRLENLYLDHNS 335 (597)
T ss_dssp EEECTTSCCCE---EECSSSCC-TTCCEEECCSSCCC-CCGGGHH---HHTTCSEEECCSSC
T ss_pred EEECCCCCCCC---CCcccccC-CCCcEEECCCCCCC-ccCcccc---cCCCCCEEECCCCC
Confidence 77777766432 23333334 77788888777654 4555444 67788888887764
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=7.1e-23 Score=212.66 Aligned_cols=287 Identities=18% Similarity=0.173 Sum_probs=191.4
Q ss_pred CCCcccccccCccCCCeEEEcCCCCCccCC--cccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-
Q 038338 112 VADLEKKMEETIRKDPIAISLPQRNIQELP--ERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL- 188 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l- 188 (421)
...+..+|. .++++++|++++|.+..++ ...++++|++|++++|.. ...++...|.++++|++|++++|.+..+
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 444555565 6789999999999986553 233899999999999966 6677555568999999999999999874
Q ss_pred ChhhhcccCCcEEEcccccCCC--ccc--ccCcCCCCEEEeeCCCCccc--chhhcCCCCCCEEeccCCcCCcccchhhh
Q 038338 189 PSSLGRLINLQTLCLDWCQLED--VAA--IGQLKKLEILNLADSNIEQL--PLEIGQLTGLRLLDLTNCWSLQVIAPNVI 262 (421)
Q Consensus 189 p~~i~~l~~L~~L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~~~l 262 (421)
|..++.+.+|++|++++|.+.+ |.. ++++++|++|++++|.+..+ +..++++++|++|++++|...+..+.. +
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-L 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-G
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-c
Confidence 7889999999999999999876 444 88999999999999998855 356899999999999987544333322 3
Q ss_pred cCC--CC------------------------------CcEEEcccCCCCCccccC-----CC------------------
Q 038338 263 SKL--SR------------------------------LEELYMDNSFSGWEKVEG-----GS------------------ 287 (421)
Q Consensus 263 ~~l--~~------------------------------L~~L~l~~~~~~~~~~~~-----~~------------------ 287 (421)
+.+ ++ |++|++++|.+....+.. ..
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 333 33 555555555332211100 00
Q ss_pred -----CcChhhhcC--CCCCCEEEEEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccc
Q 038338 288 -----NASLVELKR--LTKLTTLEIEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKV 358 (421)
Q Consensus 288 -----~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 358 (421)
......+.. .++|+.|++++|.+..++.. + .+++|+.|++.. +......+..+..+++|++|++++|.+.
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 000011111 25677777777776554433 2 347788888763 3344344566777778888888887642
Q ss_pred ccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338 359 SILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC 409 (421)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c 409 (421)
...+..+..+ ++|++|++++|......+..+. ++++|+.|++++|
T Consensus 328 --~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 328 --ELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFK---FLEKLQTLDLRDN 372 (844)
T ss_dssp --CCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSC---SCCCCCEEEEETC
T ss_pred --ccCHHHhcCC-CCCCEEECCCCCCCccChhhhc---CCCCCCEEECCCC
Confidence 2223445555 7788888877755333333333 6777777777776
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2e-23 Score=209.53 Aligned_cols=271 Identities=17% Similarity=0.048 Sum_probs=213.1
Q ss_pred cccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCC
Q 038338 119 MEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL 198 (421)
Q Consensus 119 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 198 (421)
+....+++++.+++.++.+..++....+++|+.|++++|.+ ..+|. + .+++|++|++++|.... +..++.+++|
T Consensus 279 ~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~--~-~l~~L~~L~l~~n~~~~-~~~~~~l~~L 352 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPT--L-DLPFLKSLTLTMNKGSI-SFKKVALPSL 352 (606)
T ss_dssp GSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCC--C-CCSSCCEEEEESCSSCE-ECCCCCCTTC
T ss_pred cccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--ccccc--C-CCCccceeeccCCcCcc-chhhccCCCC
Confidence 34567788999999999988888666889999999999985 66773 2 78999999999984433 1146788899
Q ss_pred cEEEcccccCCC----cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcc
Q 038338 199 QTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMD 274 (421)
Q Consensus 199 ~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 274 (421)
++|++++|.+.. +..+..+++|++|++++|.+..+|..+..+++|++|++++|...+..+...+..+++|++|+++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 999999998765 4677889999999999999888888888999999999999765555553447889999999999
Q ss_pred cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc--cCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEE
Q 038338 275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI--LLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMM 351 (421)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 351 (421)
+|.+....+ ..++.+++|++|++++|.+.. +|..+ .+++|+.|+++.+ ......|..++.+++|+.|+
T Consensus 433 ~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 433 YTNTKIDFD--------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TSCCEECCT--------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCccch--------hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEE
Confidence 988766544 567888999999999988764 56665 5599999999744 44445667788999999999
Q ss_pred EcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCC-CccEEEEeecCc
Q 038338 352 LKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFP-RLKHLHVESCYE 411 (421)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~i~~c~~ 411 (421)
+++|.+. ...|..+..+ ++|++|++++|.. ..+|..+. .++ +|+.|++.+||-
T Consensus 504 Ls~N~l~--~~~~~~~~~l-~~L~~L~l~~N~l-~~~p~~~~---~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 504 MSHNNLL--FLDSSHYNQL-YSLSTLDCSFNRI-ETSKGILQ---HFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCSSCCS--CEEGGGTTTC-TTCCEEECTTSCC-CCEESCGG---GSCTTCCEEECCSCCC
T ss_pred CCCCcCC--CcCHHHccCC-CcCCEEECCCCcC-cccCHhHh---hhcccCcEEEccCCCc
Confidence 9998843 3346667777 8999999999875 46776665 776 599999988763
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.2e-22 Score=201.72 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=56.6
Q ss_pred hcCCCCCCEEEEEecCccc-cCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHh
Q 038338 294 LKRLTKLTTLEIEVRDAEI-LLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKML 370 (421)
Q Consensus 294 l~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 370 (421)
++++++|+.|++++|.+.. +|... ..++|+.|+++.+ ......|..+. ++|+.|++++|.+. .+|.++..+
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~---~ip~~~~~l 472 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIM---SIPKDVTHL 472 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCC---CCCTTTTSS
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCc---ccChhhcCC
Confidence 4555555555555555543 44432 2355666665532 22222332222 56666666666532 344444444
Q ss_pred hhcccEEEeccccCccccccc-ccccCCCCCccEEEEeecC
Q 038338 371 LQRTEDLWLVKLEGVQNVVHE-LDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~L~~L~i~~c~ 410 (421)
++|++|++++|... .+|.. +. .+++|+.|++++|+
T Consensus 473 -~~L~~L~L~~N~l~-~l~~~~~~---~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 473 -QALQELNVASNQLK-SVPDGVFD---RLTSLQYIWLHDNP 508 (562)
T ss_dssp -CCCSEEECCSSCCC-CCCTTSTT---TCTTCCCEECCSCC
T ss_pred -CCCCEEECCCCCCC-CCCHHHHh---cCCCCCEEEecCCC
Confidence 67777777766543 45443 33 66777777777664
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=199.65 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=105.9
Q ss_pred cCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc-cCCc
Q 038338 238 GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI-LLPD 316 (421)
Q Consensus 238 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~ 316 (421)
..+++|++|++++|...+..|.. ++.+++|++|++++|.+..... .+..++.+++|++|++++|.+.. +|..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSK------IAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHH------HHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCcccc------chHHHhhCCCCCEEECCCCcCCcccccc
Confidence 45666677777766544444443 5667777777777776654211 22457788888888888888876 7765
Q ss_pred c--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCccccccc-cc
Q 038338 317 F--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHE-LD 393 (421)
Q Consensus 317 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~ 393 (421)
. .+++|+.|+++.+ ......|..+. ++|+.|++++|.+. .+|.++..+ ++|++|++++|... .+|.. +.
T Consensus 394 ~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~---~ip~~~~~l-~~L~~L~L~~N~l~-~l~~~~~~ 465 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIK---SIPKQVVKL-EALQELNVASNQLK-SVPDGIFD 465 (520)
T ss_dssp SCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCC---CCCGGGGGC-TTCCEEECCSSCCC-CCCTTTTT
T ss_pred hhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccc---ccchhhhcC-CCCCEEECCCCcCC-ccCHHHhc
Confidence 2 4488888888744 34334444443 78999999998753 466666666 89999999998654 56654 44
Q ss_pred ccCCCCCccEEEEeecC
Q 038338 394 DGEGFPRLKHLHVESCY 410 (421)
Q Consensus 394 ~~~~~~~L~~L~i~~c~ 410 (421)
.+++|+.|++++|+
T Consensus 466 ---~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 466 ---RLTSLQKIWLHTNP 479 (520)
T ss_dssp ---TCTTCCEEECCSSC
T ss_pred ---cCCcccEEECcCCC
Confidence 78999999998886
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.6e-23 Score=204.15 Aligned_cols=156 Identities=26% Similarity=0.272 Sum_probs=118.4
Q ss_pred ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCc
Q 038338 123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQ 199 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~ 199 (421)
..+++++|+++++.+..++. ..++++|++|++++|.+ ..++...|.++++|++|++++|.++.+| ..++.+.+|+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 35678899999988866653 34888999999998875 5565555688899999999999888754 6788899999
Q ss_pred EEEcccccCCC-c-ccccCcCCCCEEEeeCCCCcc--cchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCC----cEE
Q 038338 200 TLCLDWCQLED-V-AAIGQLKKLEILNLADSNIEQ--LPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRL----EEL 271 (421)
Q Consensus 200 ~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L 271 (421)
+|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|.. ..++...++.+++| +.|
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhc
Confidence 99999988887 3 368889999999999988874 688888999999999988644 44443335555555 667
Q ss_pred EcccCCCCCc
Q 038338 272 YMDNSFSGWE 281 (421)
Q Consensus 272 ~l~~~~~~~~ 281 (421)
++++|.+...
T Consensus 183 ~l~~n~l~~~ 192 (570)
T 2z63_A 183 DLSLNPMNFI 192 (570)
T ss_dssp ECTTCCCCEE
T ss_pred ccCCCCceec
Confidence 7766655443
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.4e-22 Score=201.29 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338 125 KDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 202 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 202 (421)
+++++|++++|.+..++. ...+++|++|++++|.+ ..++...|.++++|++|++++|.++.+|.. .+.+|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 566667777666655542 23666677777766664 334333346666677777777666666654 566677777
Q ss_pred cccccCCC---cccccCcCCCCEEEeeCCCCcccchhhcCCCCC--CEEeccCCcC
Q 038338 203 LDWCQLED---VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGL--RLLDLTNCWS 253 (421)
Q Consensus 203 l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~ 253 (421)
+++|.+.. |..++++++|++|++++|.+.. ..+..+++| ++|++++|..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 77666655 2566666777777777666654 234444444 6666666544
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=8.7e-23 Score=185.00 Aligned_cols=264 Identities=19% Similarity=0.199 Sum_probs=188.3
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWC 206 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 206 (421)
+.++..++.+..+|.. -.++++.|++++|.+ ..++...|..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5677777777777643 346888888888875 555555567888888888888888775 667888888888888888
Q ss_pred c-CCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338 207 Q-LED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK 282 (421)
Q Consensus 207 ~-~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 282 (421)
. +.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++| .+..++...++.+++|++|++++|.+...+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccC
Confidence 6 666 67788888888888888888866 455778888888888886 445566555778888888888888777554
Q ss_pred ccCCCCcChhhhcCCCCCCEEEEEecCcccc-CCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccc
Q 038338 283 VEGGSNASLVELKRLTKLTTLEIEVRDAEIL-LPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSI 360 (421)
Q Consensus 283 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 360 (421)
. ..+..+++|+.|++++|.+..+ |..+ .+++|+.|++..+ .+....+..+..+++|+.|++++|.+...
T Consensus 170 ~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 E--------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp T--------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred H--------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 4 4577788888888888888655 4444 4588888888743 44434456688899999999999886443
Q ss_pred ccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeec
Q 038338 361 LQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESC 409 (421)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c 409 (421)
.... ++. ..++.+....+...-..|..+. ...+..++..++.+|
T Consensus 241 ~~~~-~~~---~~l~~~~~~~~~~~c~~p~~l~-g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 241 CRAR-PLW---AWLQKFRGSSSEVPCSLPQRLA-GRDLKRLAANDLQGC 284 (285)
T ss_dssp GGGH-HHH---HHHHHCCSEECCCBEEESGGGT-TCBGGGSCGGGSCCC
T ss_pred CCcH-HHH---HHHHhcccccCccccCCchHhC-CcChhhcCHHHhccC
Confidence 3332 221 3344444555554445565554 455677777777776
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=8.1e-23 Score=189.40 Aligned_cols=264 Identities=15% Similarity=0.172 Sum_probs=209.0
Q ss_pred CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcc
Q 038338 126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLD 204 (421)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~ 204 (421)
+++.++++++.+..+|... .++++.|++++|.+ ..++...+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5788999999988888654 47999999999986 556555568999999999999999885 7789999999999999
Q ss_pred cccCCC-cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcccCCCCCc
Q 038338 205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMDNSFSGWE 281 (421)
Q Consensus 205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (421)
+|.+.. |..+. ++|++|++++|.+..+|.. +..+++|++|++++|.... ......++.+ +|++|++++|.+...
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 999988 76665 8999999999999988765 8899999999999975532 1333336667 999999999987765
Q ss_pred cccCCCCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338 282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS 359 (421)
Q Consensus 282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (421)
+. .+. ++|++|++++|.+..++. .+ .+++|+.|+++. +......+..+..+++|+.|++++|.+.
T Consensus 188 ~~---------~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 188 PK---------DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp CS---------SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred Cc---------ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 43 122 689999999999987764 33 559999999974 4444445567899999999999998854
Q ss_pred cccchhHHHHhhhcccEEEeccccCcccccccccc---cCCCCCccEEEEeecCc
Q 038338 360 ILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDD---GEGFPRLKHLHVESCYE 411 (421)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~L~~L~i~~c~~ 411 (421)
.+|.++..+ ++|++|++++|......+..+.. ...+++|+.|++.++|-
T Consensus 255 --~lp~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 255 --RVPAGLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp --BCCTTGGGC-TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred --ecChhhhcC-ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 567777777 99999999999865433333320 11368899999999973
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=7e-23 Score=187.63 Aligned_cols=244 Identities=17% Similarity=0.101 Sum_probs=161.3
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC---ChhhhcccCCcEEEcc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL---PSSLGRLINLQTLCLD 204 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~ 204 (421)
+.++..++.+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.++.+ |..+..+.+|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 35666666666666533 25788888888875 467766667788888888888877653 5666777888888888
Q ss_pred cccCCC-cccccCcCCCCEEEeeCCCCcccch--hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338 205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPL--EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281 (421)
Q Consensus 205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (421)
+|.+.. |..+..+++|++|++++|++..++. .+..+++|++|++++|.... .+...++.+++|++|++++|.+...
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCccccc
Confidence 888777 7778888888888888888776654 57778888888888864433 3333467788888888887766541
Q ss_pred cccCCCCcChhhhcCCCCCCEEEEEecCccccC-Ccc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338 282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILL-PDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS 359 (421)
Q Consensus 282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (421)
.. ...+..+++|++|++++|.+..++ ..+ .+++|+.|+++.+ ......+..+..+++|+.|++++|.+..
T Consensus 166 ~~-------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 166 FL-------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp EE-------CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred cc-------hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcc
Confidence 11 145667778888888877776553 333 3366666666532 2222223345667777777777776432
Q ss_pred cccchhHHHHhhhcccEEEeccccCc
Q 038338 360 ILQENDGTKMLLQRTEDLWLVKLEGV 385 (421)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (421)
..+..+..+.++|++|++++|+..
T Consensus 238 --~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 --SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp --CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred --cCHHHHHhhhccCCEEEccCCCee
Confidence 223334444236777777777654
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=188.79 Aligned_cols=259 Identities=17% Similarity=0.176 Sum_probs=203.8
Q ss_pred CcccccccCccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh
Q 038338 114 DLEKKMEETIRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS 191 (421)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~ 191 (421)
.+..+|. ...+++++|+++++.+..++. ..++++|+.|++++|.+ ..++...|.++++|++|++++|.++.+|..
T Consensus 42 ~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred Ccccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 3444442 334689999999999977765 44899999999999986 455555568899999999999999998876
Q ss_pred -hhcccCCcEEEcccccCCC-cc--cccCcCCCCEEEeeCC-CCcccc-hhhcCCCCCCEEeccCCcCCcccchhhhcCC
Q 038338 192 -LGRLINLQTLCLDWCQLED-VA--AIGQLKKLEILNLADS-NIEQLP-LEIGQLTGLRLLDLTNCWSLQVIAPNVISKL 265 (421)
Q Consensus 192 -i~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 265 (421)
++.+++|++|++++|.+.. |. .++++++|++|++++| .+..++ ..+..+++|++|++++|...+..+. .++.+
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTC
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH-HHhcc
Confidence 8899999999999999988 54 7899999999999999 577664 5689999999999999765444454 48999
Q ss_pred CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-----cccCCceEEEEEcCCcc---chh
Q 038338 266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-----VSVELQRYRIRIGDKLE---YEI 337 (421)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~---~~~ 337 (421)
++|++|++++|.+...+. ..+..+++|+.|++++|.+..++... ..+.++.+++....... ..+
T Consensus 198 ~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLE--------IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp SEEEEEEEECSCSTTHHH--------HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred ccCCeecCCCCccccchh--------hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 999999999998765543 44567899999999999987654331 23678888886433222 135
Q ss_pred hhhhchhhhceeEEEcCCcccccccchhHH-HHhhhcccEEEeccccCcccc
Q 038338 338 DQLLVKSEALRLMMLKGLEKVSILQENDGT-KMLLQRTEDLWLVKLEGVQNV 388 (421)
Q Consensus 338 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 388 (421)
|..+..+++|+.|++++|.+. .+|.++ ..+ ++|++|++++|+.....
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~---~i~~~~~~~l-~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK---SVPDGIFDRL-TSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC---CCCTTTTTTC-TTCCEEECCSSCBCCCH
T ss_pred HHHHhcccCCCEEECCCCCCC---ccCHHHHhcC-CCCCEEEeeCCCccCcC
Confidence 777889999999999998854 455554 566 99999999999876443
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=204.06 Aligned_cols=143 Identities=10% Similarity=-0.018 Sum_probs=76.7
Q ss_pred hcCCCCCcEEEcccCCCCCccccC-----------CCC-----cChhhhcCCCCCCEEEEEecCcccc-CCcc-cccCCc
Q 038338 262 ISKLSRLEELYMDNSFSGWEKVEG-----------GSN-----ASLVELKRLTKLTTLEIEVRDAEIL-LPDF-VSVELQ 323 (421)
Q Consensus 262 l~~l~~L~~L~l~~~~~~~~~~~~-----------~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~ 323 (421)
+..+++|++|++++|.+...+... ... .....+..+++|+.|++++|.+... |..+ .+++|+
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 667888888888887665443310 000 0012344555566666655555432 2222 346666
Q ss_pred eEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccE
Q 038338 324 RYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKH 403 (421)
Q Consensus 324 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 403 (421)
.|++..+......+|..+..+++|+.|++++|.+. ...+.++..+ ++|++|++++|......+..+. ++++|+.
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~ 522 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSL-SSLQVLNMASNQLKSVPDGIFD---RLTSLQK 522 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTC-TTCCEEECCSSCCSCCCTTTTT---TCTTCCE
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccc--cCChhhhhcc-cCCCEEeCCCCcCCCCCHHHhh---cccCCcE
Confidence 66664332222234555666666666666666532 2224445555 6677777766654443333333 6677777
Q ss_pred EEEeecC
Q 038338 404 LHVESCY 410 (421)
Q Consensus 404 L~i~~c~ 410 (421)
|++++|+
T Consensus 523 L~l~~N~ 529 (570)
T 2z63_A 523 IWLHTNP 529 (570)
T ss_dssp EECCSSC
T ss_pred EEecCCc
Confidence 7776654
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.4e-22 Score=185.61 Aligned_cols=258 Identities=16% Similarity=0.104 Sum_probs=199.4
Q ss_pred ccCCCeEEEcCCCCCccCCcc--cCCCCccEEEeeecCCCC-cccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338 123 IRKDPIAISLPQRNIQELPER--LQCPNLQLFLLFRQGYGP-VQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 199 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 199 (421)
..+++++|+++++.+..++.. .++++|+.|++++|.+.. +..+..+ ..+++|++|++++|.+..+|..+..+++|+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCC
Confidence 357899999999999888864 389999999999998611 2224444 579999999999999999998899999999
Q ss_pred EEEcccccCCC-c--ccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcc
Q 038338 200 TLCLDWCQLED-V--AAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMD 274 (421)
Q Consensus 200 ~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~ 274 (421)
+|++++|.+.. + ..+.++++|++|++++|.+... |..+..+++|++|++++|...+ ..|. .+..+++|++|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECC
Confidence 99999999887 4 5789999999999999998854 5568899999999999976554 2454 48899999999999
Q ss_pred cCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhh-hceeEE
Q 038338 275 NSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSE-ALRLMM 351 (421)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~ 351 (421)
+|.+....+ ..++.+++|+.|++++|.+..++... .+++|+.|+++. +......+..+..++ +|+.|+
T Consensus 184 ~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 184 QCQLEQLSP--------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TSCCCEECT--------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT-SCCCBCSSSSCCCCCTTCCEEE
T ss_pred CCCcCCcCH--------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC-CCCcccCHHHHHhhhccCCEEE
Confidence 998877654 56888999999999999998777643 459999999974 445545667788884 999999
Q ss_pred EcCCcccccccchhHHHHhhhcccEEEeccccCcccccccc
Q 038338 352 LKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHEL 392 (421)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 392 (421)
+++|.+............+ ...+.+.+..+...-..|..+
T Consensus 255 L~~N~~~~~c~~~~~~~~l-~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWI-KDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp CTTCCEECSGGGHHHHHHH-HHTGGGBSCGGGCBEEESGGG
T ss_pred ccCCCeecccChHHHHHHH-HhhhhhhccccccccCCchhh
Confidence 9999875443332222222 445555544433333334433
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.4e-22 Score=194.24 Aligned_cols=242 Identities=21% Similarity=0.164 Sum_probs=175.5
Q ss_pred CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcc
Q 038338 126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLD 204 (421)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 204 (421)
+.+.++..+..+..+|.... ++++.|++++|.+ ..++...|.++++|++|++++|.+..++ ..+..+.+|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35677777777777775432 6889999999986 4454444688999999999999888754 668889999999999
Q ss_pred cccCCC-c-ccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338 205 WCQLED-V-AAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281 (421)
Q Consensus 205 ~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (421)
+|.++. + ..+..+++|++|++++|++..+|. .+..+++|++|++++|+.++.++...+..+++|++|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 999888 4 558889999999999999987776 4788999999999988888888877688899999999998877654
Q ss_pred cccCCCCcChhhhcCCCCCCEEEEEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338 282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS 359 (421)
Q Consensus 282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (421)
+ .+..+++|+.|++++|.+..++.. + .+++|+.|++. .+......+..+..+++|+.|++++|.+..
T Consensus 212 ~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 212 P----------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM-NSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp C----------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred c----------cccccccccEEECcCCcCcccCcccccCccCCCEEEeC-CCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 2 367788888888888887665433 3 34667776665 233333344556666667777776665321
Q ss_pred cccchhHHHHhhhcccEEEeccccC
Q 038338 360 ILQENDGTKMLLQRTEDLWLVKLEG 384 (421)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (421)
..+..+..+ ++|++|++++|+.
T Consensus 281 --~~~~~~~~l-~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 281 --LPHDLFTPL-RYLVELHLHHNPW 302 (452)
T ss_dssp --CCTTSSTTC-TTCCEEECCSSCE
T ss_pred --cChHHhccc-cCCCEEEccCCCc
Confidence 112223333 6666666666653
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=193.22 Aligned_cols=218 Identities=19% Similarity=0.251 Sum_probs=100.6
Q ss_pred CCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEE
Q 038338 125 KDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTL 201 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 201 (421)
++++.|++++|.+..++. +.++++|+.|++++|.+ ..++...|.++++|++|++++|.++.+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 445555555555533331 12455555555555543 33333334455555555555555554433 34455555555
Q ss_pred EcccccCCC--cccccCcCCCCEEEeeCC-CCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338 202 CLDWCQLED--VAAIGQLKKLEILNLADS-NIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF 277 (421)
Q Consensus 202 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 277 (421)
++++|.+.. +..+.++++|++|++++| .+..++. .+..+++|++|++++| .+..+|. +..+++|++|++++|.
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLSGNH 218 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTCSSCCEEECTTSC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCCcccCEEECCCCc
Confidence 555555444 234455555555555543 3333333 2444555555555553 2334443 4455555555555554
Q ss_pred CCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCC
Q 038338 278 SGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGL 355 (421)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 355 (421)
+....+ ..+..+++|+.|++++|.+..++... .+++|+.|+++. +.+....+..+..+++|+.|++++|
T Consensus 219 l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 219 LSAIRP--------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCEECT--------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred cCccCh--------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCC
Confidence 443332 33445555555555555544333221 234555555542 2222222233444555555555554
Q ss_pred c
Q 038338 356 E 356 (421)
Q Consensus 356 ~ 356 (421)
.
T Consensus 290 p 290 (440)
T 3zyj_A 290 P 290 (440)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=2.2e-22 Score=194.09 Aligned_cols=184 Identities=16% Similarity=0.088 Sum_probs=105.9
Q ss_pred ccccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccC
Q 038338 118 KMEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 197 (421)
Q Consensus 118 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 197 (421)
.+.+..++++++|++++|.+..++ ...+++|+.|++++|.+ ..++ ++.+++|++|++++|.++.+| ++.+++
T Consensus 57 ~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~ 128 (457)
T 3bz5_A 57 MTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPL 128 (457)
T ss_dssp CTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTT
T ss_pred ChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCeec--CCCCCc
Confidence 345566677777777777776664 44677777777777765 2333 356777777777777776664 666777
Q ss_pred CcEEEcccccCCCcccccCcCCCCEEEeeCC-CCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338 198 LQTLCLDWCQLEDVAAIGQLKKLEILNLADS-NIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276 (421)
Q Consensus 198 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (421)
|++|++++|.++.. .++++++|++|++++| .+..+ .++.+++|++|++++|. +..++ ++.+++|+.|++++|
T Consensus 129 L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 129 LTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCTTCCEEECCSS
T ss_pred CCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCCCCCEEECcCC
Confidence 77777777776662 1555666666666665 33333 24555666666665542 33333 345555555555555
Q ss_pred CCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEE
Q 038338 277 FSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIR 328 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 328 (421)
.+... .++.+++|+.|++++|.+..+| ...+++|+.|+++
T Consensus 202 ~l~~~-----------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 202 NITKL-----------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCS 241 (457)
T ss_dssp CCSCC-----------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC
T ss_pred cCCee-----------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEee
Confidence 44432 1334445555555555544444 1133445554443
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.7e-22 Score=193.81 Aligned_cols=224 Identities=21% Similarity=0.223 Sum_probs=184.5
Q ss_pred ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCc
Q 038338 123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQ 199 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~ 199 (421)
..++++.|++++|.+..++. +.++++|+.|++++|.+ ..++...|.++++|++|++++|.++.+|.. +..+++|+
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 45789999999999966643 33899999999999986 555555568899999999999999987664 88899999
Q ss_pred EEEcccccCCC--cccccCcCCCCEEEeeCC-CCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338 200 TLCLDWCQLED--VAAIGQLKKLEILNLADS-NIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275 (421)
Q Consensus 200 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 275 (421)
+|++++|.+.. +..+.++++|++|++++| .+..++.. +..+++|++|++++| .+..+|. +..+++|++|++++
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN--LTPLVGLEELEMSG 227 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC--CTTCTTCCEEECTT
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc--ccccccccEEECcC
Confidence 99999999988 457899999999999995 67777664 889999999999996 4556665 78999999999999
Q ss_pred CCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEc
Q 038338 276 SFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLK 353 (421)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 353 (421)
|.+....+ ..+.++++|+.|++++|.+..++.. + .+++|+.|+++.+ .+....+..+..+++|+.|+++
T Consensus 228 N~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 228 NHFPEIRP--------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp SCCSEECG--------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECC
T ss_pred CcCcccCc--------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEcc
Confidence 99887655 6789999999999999998766544 3 4599999999844 4454445567889999999999
Q ss_pred CCccccc
Q 038338 354 GLEKVSI 360 (421)
Q Consensus 354 ~~~~~~~ 360 (421)
+|.+...
T Consensus 299 ~Np~~Cd 305 (452)
T 3zyi_A 299 HNPWNCD 305 (452)
T ss_dssp SSCEECS
T ss_pred CCCcCCC
Confidence 9886433
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=2.3e-22 Score=204.51 Aligned_cols=275 Identities=17% Similarity=0.099 Sum_probs=205.6
Q ss_pred cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcE
Q 038338 124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQT 200 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 200 (421)
.+++++|+++++.+..++. ..++++|++|++++|.+ ..++...|.++++|++|++++|.++.+|. .++.+.+|++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 4789999999999977775 34899999999999986 44544556889999999999999999886 5899999999
Q ss_pred EEcccccCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhc--CCCCCcEEEccc
Q 038338 201 LCLDWCQLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVIS--KLSRLEELYMDN 275 (421)
Q Consensus 201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~ 275 (421)
|++++|.+.. +..++++++|++|++++|.+... |..++.+++|++|++++|.. ..++...++ .+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCC
Confidence 9999999888 47899999999999999998855 45688999999999999754 444443343 568999999999
Q ss_pred CCCCCccccCCCCcChhhhc---------------------------CCCCCCEEEEEecCccccCC-cc-cc--cCCce
Q 038338 276 SFSGWEKVEGGSNASLVELK---------------------------RLTKLTTLEIEVRDAEILLP-DF-VS--VELQR 324 (421)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~---------------------------~l~~L~~L~l~~~~~~~~~~-~~-~~--~~L~~ 324 (421)
|.+....+. .++ ..++|+.|++++|.+..++. .+ .+ ++|+.
T Consensus 181 n~l~~~~~~--------~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 181 NQIKEFSPG--------CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp CCCCCBCTT--------GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred CcccccChh--------hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 987765441 122 23678888888887764433 33 22 45999
Q ss_pred EEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcc-----cccc--cccccCC
Q 038338 325 YRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQ-----NVVH--ELDDGEG 397 (421)
Q Consensus 325 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~--~~~~~~~ 397 (421)
|+++.+ ......+..++.+++|++|++++|.+. ...+..+..+ ++|++|++.++.... .+|. ... ...
T Consensus 253 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~lp~i~~~~-~~~ 327 (680)
T 1ziw_A 253 LDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQ--HLFSHSLHGL-FNVRYLNLKRSFTKQSISLASLPKIDDFS-FQW 327 (680)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECCSCCBS--EECTTTTTTC-TTCCEEECTTCBCCC------CCEECTTT-TTT
T ss_pred EECCCC-CcCccCcccccCcccccEeeCCCCccC--ccChhhhcCC-CCccEEeccchhhhcccccccccccChhh-ccc
Confidence 998743 344455667888999999999998743 3345566776 899999998765332 2221 011 337
Q ss_pred CCCccEEEEeecCceeee
Q 038338 398 FPRLKHLHVESCYEIVHI 415 (421)
Q Consensus 398 ~~~L~~L~i~~c~~L~~l 415 (421)
+++|+.|++++|. +..+
T Consensus 328 l~~L~~L~l~~n~-l~~~ 344 (680)
T 1ziw_A 328 LKCLEHLNMEDND-IPGI 344 (680)
T ss_dssp CTTCCEEECCSCC-BCCC
T ss_pred CCCCCEEECCCCc-cCCC
Confidence 8999999999884 5444
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.8e-22 Score=198.72 Aligned_cols=188 Identities=19% Similarity=0.222 Sum_probs=151.2
Q ss_pred CcccccccCccCCCeEEEcCCCCCccCC-c-ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh
Q 038338 114 DLEKKMEETIRKDPIAISLPQRNIQELP-E-RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS 191 (421)
Q Consensus 114 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~ 191 (421)
.+..+|. ...+++++|++++|.+..++ . ..++++|++|++++|.+ ..++...|.++++|++|++++|.+..+++.
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHH
Confidence 3444443 23478999999999996654 3 34899999999999986 455555568899999999999999987665
Q ss_pred -hhcccCCcEEEcccccCCC---cccccCcCCCCEEEeeCCC-Ccccc-hhhcCCCCCCEEeccCCcCCcccchhhhcCC
Q 038338 192 -LGRLINLQTLCLDWCQLED---VAAIGQLKKLEILNLADSN-IEQLP-LEIGQLTGLRLLDLTNCWSLQVIAPNVISKL 265 (421)
Q Consensus 192 -i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 265 (421)
++.+++|++|++++|.+.. |..++++++|++|++++|. +..+| ..+..+++|++|++++|...+..|.. ++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTC
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcc
Confidence 9999999999999999874 6789999999999999997 66776 46899999999999997665556654 8899
Q ss_pred CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcccc
Q 038338 266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL 313 (421)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 313 (421)
++|++|++++|.....+. ..++.+++|+.|++++|.+..+
T Consensus 172 ~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLE--------IFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp SEEEEEEEECSBSTTHHH--------HHHHSTTTBSEEEEESCBCTTC
T ss_pred ccCceEecccCcccccch--------hhHhhcccccEEEccCCccccc
Confidence 999999999987654433 3346789999999999887654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=4.3e-22 Score=191.71 Aligned_cols=242 Identities=22% Similarity=0.219 Sum_probs=188.5
Q ss_pred CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcc
Q 038338 126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLD 204 (421)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 204 (421)
..+.++..+..+..+|.... ++++.|++++|.+ ..++...|.++++|++|++++|.+..++ ..+..+.+|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 35678888888888886543 7899999999986 5555555689999999999999998864 568899999999999
Q ss_pred cccCCC-c-ccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338 205 WCQLED-V-AAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281 (421)
Q Consensus 205 ~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (421)
+|.++. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|+.++.++...+..+++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 999888 4 578999999999999999998876 5788999999999998888888887788999999999999987754
Q ss_pred cccCCCCcChhhhcCCCCCCEEEEEecCccccCC-cc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338 282 KVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP-DF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS 359 (421)
Q Consensus 282 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (421)
+ .+..+++|+.|++++|.+..++. .+ .+++|+.|++. .+.+....+..+..+++|+.|++++|.+..
T Consensus 201 ~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 201 P----------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI-QSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp C----------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred c----------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC-CCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 3 37788899999999998876643 33 44788888876 334444445667777888888888877432
Q ss_pred cccchhHHHHhhhcccEEEeccccC
Q 038338 360 ILQENDGTKMLLQRTEDLWLVKLEG 384 (421)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (421)
..+..+..+ ++|+.|++++|+.
T Consensus 270 --~~~~~~~~l-~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 270 --LPHDLFTPL-HHLERIHLHHNPW 291 (440)
T ss_dssp --CCTTTTSSC-TTCCEEECCSSCE
T ss_pred --cChhHhccc-cCCCEEEcCCCCc
Confidence 122334444 7788888877764
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=6.6e-22 Score=205.37 Aligned_cols=277 Identities=15% Similarity=0.078 Sum_probs=198.3
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCC-CCC-ChhhhcccCCcEEEccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHF-SSL-PSSLGRLINLQTLCLDW 205 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-p~~i~~l~~L~~L~l~~ 205 (421)
+.++.+++.+..+|. -.++++.|++++|.+ ..+....|.++++|++|++++|.. ..+ |..++.+++|++|++++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 567778888888987 568999999999986 444434468999999999999954 445 77899999999999999
Q ss_pred ccCCC--cccccCcCCCCEEEeeCCCCcc-cchh--hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 206 CQLED--VAAIGQLKKLEILNLADSNIEQ-LPLE--IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
|.+.. |..++++++|++|++++|.+.. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99987 7899999999999999999984 5655 89999999999999866554444458999999999999998765
Q ss_pred ccccC--------------CC----CcChhhhcCCC------CCCEEEEEecCcc-ccCCcc------------------
Q 038338 281 EKVEG--------------GS----NASLVELKRLT------KLTTLEIEVRDAE-ILLPDF------------------ 317 (421)
Q Consensus 281 ~~~~~--------------~~----~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~------------------ 317 (421)
..+.. .. ......++.+. .|+.|++++|.+. .++..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 43310 00 00111112222 2666666666432 111111
Q ss_pred ---------------------cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccE
Q 038338 318 ---------------------VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTED 376 (421)
Q Consensus 318 ---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 376 (421)
..++|+.|+++.+ ......+..+..+++|+.|++++|.+. ...+..+..+ ++|++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l-~~L~~ 318 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKIN--KIADEAFYGL-DNLQV 318 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCC--EECTTTTTTC-SSCCE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCC--CCChHHhcCC-CCCCE
Confidence 0145667776532 333344566778888899999888743 2234456666 88999
Q ss_pred EEeccccCcccccccccccCCCCCccEEEEeecCceeeec
Q 038338 377 LWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIV 416 (421)
Q Consensus 377 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 416 (421)
|++++|......+..+. ++++|+.|++++| .+..+.
T Consensus 319 L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N-~i~~~~ 354 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFY---GLPKVAYIDLQKN-HIAIIQ 354 (844)
T ss_dssp EEEESCCCSCCCSCSCS---SCTTCCEEECCSC-CCCCCC
T ss_pred EECCCCCCCccCHHHhc---CCCCCCEEECCCC-CCCccC
Confidence 99998877555565555 8899999999887 455544
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6.3e-22 Score=201.21 Aligned_cols=274 Identities=19% Similarity=0.196 Sum_probs=174.3
Q ss_pred ccCccCCCeEEEcCCCCCccCC-ccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhccc
Q 038338 120 EETIRKDPIAISLPQRNIQELP-ERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLI 196 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~ 196 (421)
.+..++++++|+++++.+..++ ... ++++|++|++++|.+ ..++...|.++++|++|++++|.+..++ ..++.++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc--CccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 3677889999999999886654 333 889999999999985 5677665688999999999999998865 5689999
Q ss_pred CCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-h--cCCCCCCEEeccCCcCCcccchhhhcCC------
Q 038338 197 NLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-I--GQLTGLRLLDLTNCWSLQVIAPNVISKL------ 265 (421)
Q Consensus 197 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~--~~l~~L~~L~l~~~~~~~~~~~~~l~~l------ 265 (421)
+|++|++++|.+.. +..++++++|++|++++|.++.++.. + ..+++|++|++++|.. ..+++..++.+
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC-CCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc-cccChhhhhhhhhhhhh
Confidence 99999999999877 67788999999999999998877654 3 3568899999988744 33333324443
Q ss_pred ---------------------CCCcEEEcccCCCCCccccCCCCcChhhhcCCC--CCCEEEEEecCccccCCc-c-ccc
Q 038338 266 ---------------------SRLEELYMDNSFSGWEKVEGGSNASLVELKRLT--KLTTLEIEVRDAEILLPD-F-VSV 320 (421)
Q Consensus 266 ---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~-~-~~~ 320 (421)
++|+.|++++|.+....+ ..+..++ +|+.|++++|.+..++.. + .++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN--------TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT--------TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccCh--------hHhhccCcCCCCEEECCCCCcCccCcccccCcc
Confidence 345555555554443322 2333333 366666666666544332 2 346
Q ss_pred CCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccc---cchh----HHHHhhhcccEEEeccccCccccccccc
Q 038338 321 ELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL---QEND----GTKMLLQRTEDLWLVKLEGVQNVVHELD 393 (421)
Q Consensus 321 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 393 (421)
+|+.|++..+ ......+..+..+++|+.|++++|...... ..|. .+..+ ++|++|++++|......+..+.
T Consensus 273 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~ 350 (680)
T 1ziw_A 273 QLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFT 350 (680)
T ss_dssp TCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTT
T ss_pred cccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHhc
Confidence 6666666532 333334455566666666666554311100 0111 23333 5566666665554443333333
Q ss_pred ccCCCCCccEEEEeec
Q 038338 394 DGEGFPRLKHLHVESC 409 (421)
Q Consensus 394 ~~~~~~~L~~L~i~~c 409 (421)
++++|+.|++++|
T Consensus 351 ---~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 351 ---GLINLKYLSLSNS 363 (680)
T ss_dssp ---TCTTCCEEECTTC
T ss_pred ---cccCCcEEECCCC
Confidence 5555555555544
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=5.6e-24 Score=195.80 Aligned_cols=265 Identities=18% Similarity=0.134 Sum_probs=195.8
Q ss_pred CccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338 122 TIRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 199 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 199 (421)
...+++++|++++|.+..++. ...+++|+.|++++|.+ .. .+. +..+++|++|++++|.++.++. .++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~-~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YE-TLD--LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EE-EEE--ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-Cc-chh--hhhcCCCCEEECcCCccccccC----CCCcC
Confidence 345689999999999876653 34889999999999986 33 333 5789999999999998876553 47899
Q ss_pred EEEcccccCCC-cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338 200 TLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF 277 (421)
Q Consensus 200 ~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 277 (421)
+|++++|.+.. +.. .+++|++|++++|++..++. .++.+++|++|++++|......+......+++|++|++++|.
T Consensus 103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 99999999887 432 36889999999999997754 678899999999999755443444433578999999999998
Q ss_pred CCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCc
Q 038338 278 SGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLE 356 (421)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 356 (421)
+..... ...+++|++|++++|.+..+|..+ .+++|+.|+++.+ .+. .+|..+..+++|+.|++++|.
T Consensus 181 l~~~~~----------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 181 IYDVKG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCEEEC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCC-EECTTCCCCTTCCEEECTTCC
T ss_pred Cccccc----------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-ccc-chhhHhhcCCCCCEEEccCCC
Confidence 776533 335789999999999998887776 4589999999743 444 467778888999999999988
Q ss_pred ccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCcee
Q 038338 357 KVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIV 413 (421)
Q Consensus 357 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~ 413 (421)
+. ....+.++..+ ++|+.|++.++..++....... ..+.+....-..|..+.
T Consensus 249 ~~-~~~~~~~~~~~-~~L~~l~l~~~~~l~~~~~~~~---~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 249 FH-CGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEEC---TVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp CB-HHHHHHHHHTC-HHHHHHHHHHHHHHHSSSSCCC---SSTTCEEETTEEEBCCT
T ss_pred cc-CcCHHHHHhcc-ccceEEECCCchhccCCchhcc---CCCceecccceeeccCC
Confidence 53 23566777776 8899999987776654432222 33444444444565554
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.6e-22 Score=186.00 Aligned_cols=262 Identities=15% Similarity=0.074 Sum_probs=203.9
Q ss_pred CeEEEcCCCCCccCCc-cc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338 127 PIAISLPQRNIQELPE-RL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 204 (421)
Q Consensus 127 l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 204 (421)
+...++..+.+...+. .. .+++|+.|++++|.+ ..++...+..+++|++|++++|.+...++ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 3444555555533322 22 667999999999986 55665556899999999999999987665 8899999999999
Q ss_pred cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338 205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV 283 (421)
Q Consensus 205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 283 (421)
+|.++. + ..++|++|++++|.+..++. ..+++|++|++++|. +..++...++.+++|++|++++|.+....+
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCcccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 999876 4 33899999999999997765 347899999999964 445555447889999999999998887654
Q ss_pred cCCCCcChhhh-cCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccccc
Q 038338 284 EGGSNASLVEL-KRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQ 362 (421)
Q Consensus 284 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 362 (421)
..+ ..+++|++|++++|.+..++....+++|+.|+++.+ .+. .++..+..+++|+.|++++|.+. .
T Consensus 162 --------~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~L~~N~l~---~ 228 (317)
T 3o53_A 162 --------AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLA-FMGPEFQSAAGVTWISLRNNKLV---L 228 (317)
T ss_dssp --------GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCC-EECGGGGGGTTCSEEECTTSCCC---E
T ss_pred --------HHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCC-cCC-cchhhhcccCcccEEECcCCccc---c
Confidence 334 478999999999999988877767799999999744 444 34556889999999999998854 3
Q ss_pred chhHHHHhhhcccEEEeccccCc-ccccccccccCCCCCccEEEEeecCceeee
Q 038338 363 ENDGTKMLLQRTEDLWLVKLEGV-QNVVHELDDGEGFPRLKHLHVESCYEIVHI 415 (421)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l 415 (421)
+|..+..+ ++|++|++++|+.. ..++..+. .+++|+.|++.+|+.++..
T Consensus 229 l~~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~---~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 229 IEKALRFS-QNLEHFDLRGNGFHCGTLRDFFS---KNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ECTTCCCC-TTCCEEECTTCCCBHHHHHHHHH---TCHHHHHHHHHHHHHHHSS
T ss_pred hhhHhhcC-CCCCEEEccCCCccCcCHHHHHh---ccccceEEECCCchhccCC
Confidence 55566666 99999999999987 55565555 8899999998877665543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=4.2e-21 Score=173.88 Aligned_cols=219 Identities=21% Similarity=0.177 Sum_probs=176.4
Q ss_pred cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEee
Q 038338 150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLA 226 (421)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~ 226 (421)
++++..++.. ..+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|.+.. +..+.++++|++|+++
T Consensus 14 ~~~~c~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGL--QAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCC--SSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCc--ccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 5677777664 6677643 578999999999998866 468999999999999999887 6789999999999999
Q ss_pred CCC-Cccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338 227 DSN-IEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304 (421)
Q Consensus 227 ~~~-l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 304 (421)
+|. +..+ |..+..+++|++|++++|.. ..++...+..+++|++|++++|.+...+. ..++.+++|+.|+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPD--------DTFRDLGNLTHLF 159 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccCH--------hHhccCCCccEEE
Confidence 997 8877 66789999999999999754 45544458899999999999998876554 5578899999999
Q ss_pred EEecCccccCCc-c-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccc
Q 038338 305 IEVRDAEILLPD-F-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKL 382 (421)
Q Consensus 305 l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (421)
+++|.+..++.. + .+++|+.|++.. +......|..+..+++|+.|++++|.+.. ..+..+..+ ++|++|++++|
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l-~~L~~L~l~~N 235 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLSA--LPTEALAPL-RALQYLRLNDN 235 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSC--CCHHHHTTC-TTCCEEECCSS
T ss_pred CCCCcccccCHHHhcCccccCEEECCC-CcccccCHhHccCcccccEeeCCCCcCCc--CCHHHcccC-cccCEEeccCC
Confidence 999999888764 3 458999999974 34454557788899999999999988532 233456666 89999999998
Q ss_pred cCcc
Q 038338 383 EGVQ 386 (421)
Q Consensus 383 ~~~~ 386 (421)
+...
T Consensus 236 ~~~c 239 (285)
T 1ozn_A 236 PWVC 239 (285)
T ss_dssp CEEC
T ss_pred CccC
Confidence 8653
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=7.7e-21 Score=191.52 Aligned_cols=126 Identities=29% Similarity=0.332 Sum_probs=91.9
Q ss_pred cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcE
Q 038338 124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQT 200 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 200 (421)
..++++|++++|.+..++. +.++++|++|++++|.+ ..++...|.++++|++|++++|.++.+|. .+..+.+|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 4577888888888776663 23778888888888774 55666556778888888888887777664 4677788888
Q ss_pred EEcccccCCC-c-ccccCcCCCCEEEeeCCCCc--ccchhhcCCCCCCEEeccCC
Q 038338 201 LCLDWCQLED-V-AAIGQLKKLEILNLADSNIE--QLPLEIGQLTGLRLLDLTNC 251 (421)
Q Consensus 201 L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~ 251 (421)
|++++|.++. + ..++++++|++|++++|.+. .+|..++.+++|++|++++|
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 8888887777 3 45777888888888887776 34666777777777777765
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.8e-22 Score=196.32 Aligned_cols=236 Identities=19% Similarity=0.137 Sum_probs=178.6
Q ss_pred ccCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338 123 IRKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 200 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 200 (421)
.+++++.|++++|.+..++. +..+++|++|++++|.+ .+..+ +..+++|++|++++|.++.+|. .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD---LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-EEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-CCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 34589999999998866653 33889999999999886 33333 5788999999999998877654 378999
Q ss_pred EEcccccCCC-cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338 201 LCLDWCQLED-VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 201 L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 278 (421)
|++++|.+.. +.. .+++|+.|++++|.+..+ |..++.+++|++|++++|...+..|....+.+++|++|++++|.+
T Consensus 104 L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999888 432 468899999999998866 456888999999999997655555555334789999999999887
Q ss_pred CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcc
Q 038338 279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK 357 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 357 (421)
...+. ...+++|+.|++++|.+..+|+.+ .+++|+.|+++. +.+. .+|..+..+++|+.|++++|.+
T Consensus 182 ~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 182 YDVKG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEEEC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred ccccc----------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 76533 345889999999999988887776 458899999874 3344 3677788889999999999874
Q ss_pred cccccchhHHHHhhhcccEEEeccc
Q 038338 358 VSILQENDGTKMLLQRTEDLWLVKL 382 (421)
Q Consensus 358 ~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (421)
. ....+.++..+ +.|+.|.+..+
T Consensus 250 ~-c~~~~~~~~~l-~~L~~l~~~~~ 272 (487)
T 3oja_A 250 H-CGTLRDFFSKN-QRVQTVAKQTV 272 (487)
T ss_dssp C-HHHHHHHHTTC-HHHHHHHHHHH
T ss_pred c-CcchHHHHHhC-CCCcEEecccc
Confidence 2 23456666665 77777777533
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.9e-21 Score=178.38 Aligned_cols=244 Identities=15% Similarity=0.088 Sum_probs=141.4
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHh------ccCCCccEEEccCCCCCC-CChhh--hcc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFF------EGTEELKVLSLIGIHFSS-LPSSL--GRL 195 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~~~-lp~~i--~~l 195 (421)
++++.+++.++.+ .+|.... ..++.|++++|.+....++..+. ..+++|++|++++|.+.+ +|..+ +.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4455566666665 4554221 11666666666542223443321 146777777777777663 56554 667
Q ss_pred cCCcEEEcccccCCC-cccccCc-----CCCCEEEeeCCCCcccc-hhhcCCCCCCEEeccCCcCCcc--cchh-hhcCC
Q 038338 196 INLQTLCLDWCQLED-VAAIGQL-----KKLEILNLADSNIEQLP-LEIGQLTGLRLLDLTNCWSLQV--IAPN-VISKL 265 (421)
Q Consensus 196 ~~L~~L~l~~~~~~~-~~~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~-~l~~l 265 (421)
++|++|++++|.+.. |..++.+ ++|++|++++|++..++ ..++.+++|++|++++|...+. ++.. .++.+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 777777777777666 6656555 67777777777777555 4566777777777777654433 2222 12566
Q ss_pred CCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCC--cc-cccCCceEEEEEcCCccchhhhhhc
Q 038338 266 SRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP--DF-VSVELQRYRIRIGDKLEYEIDQLLV 342 (421)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 342 (421)
++|++|++++|.+...... ....+..+++|+.|++++|.+...++ .. .+++|+.|+++.+ .+. .+|..+.
T Consensus 201 ~~L~~L~L~~N~l~~~~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~ 273 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGV-----CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLK-QVPKGLP 273 (312)
T ss_dssp TTCCEEECTTSCCCCHHHH-----HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCS-SCCSSCC
T ss_pred CCCCEEECCCCcCcchHHH-----HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccC-hhhhhcc
Confidence 7777777777766532110 00223456677777777777655331 11 3467777777533 333 4455444
Q ss_pred hhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccC
Q 038338 343 KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEG 384 (421)
Q Consensus 343 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (421)
++|+.|++++|.+... |. +..+ ++|++|++++|+.
T Consensus 274 --~~L~~L~Ls~N~l~~~---p~-~~~l-~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN---PS-PDEL-PQVGNLSLKGNPF 308 (312)
T ss_dssp --SEEEEEECCSSCCCSC---CC-TTTS-CEEEEEECTTCTT
T ss_pred --CCceEEECCCCCCCCC---hh-HhhC-CCCCEEeccCCCC
Confidence 6777777777775332 33 4454 7777777777764
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=5.3e-20 Score=185.38 Aligned_cols=112 Identities=19% Similarity=0.262 Sum_probs=95.5
Q ss_pred ccCccCCCeEEEcCCCCCccCCcc--cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhccc
Q 038338 120 EETIRKDPIAISLPQRNIQELPER--LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLI 196 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~ 196 (421)
.+..++++++|++++|.+..++.. .++++|++|++++|.+ ..++...|.++++|++|++++|.++.+|+ .++.++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l--~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC--CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 467889999999999999887653 3899999999999985 67787778999999999999999988765 489999
Q ss_pred CCcEEEcccccCCC---cccccCcCCCCEEEeeCCCCccc
Q 038338 197 NLQTLCLDWCQLED---VAAIGQLKKLEILNLADSNIEQL 233 (421)
Q Consensus 197 ~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~l 233 (421)
+|++|++++|.+.. |..++.+++|++|++++|++..+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 99999999998765 67888899999999988876533
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=4.6e-19 Score=176.13 Aligned_cols=234 Identities=17% Similarity=0.116 Sum_probs=182.7
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 204 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 204 (421)
++++.|++++|.+..+|. .+++|++|++++|.+ ..+|. .+++|++|++++|.++.+|. .+.+|++|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCC--SCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcC--CcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 789999999999888887 678999999999986 45664 57899999999999988877 56889999999
Q ss_pred cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338 205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV 283 (421)
Q Consensus 205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 283 (421)
+|.++. |.. +++|++|++++|+++.+|. .+++|+.|++++| .+..+| ..+++|+.|++++|.+...+.
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCCCCC
Confidence 999888 654 4889999999999888875 3578889999885 455566 357889999999988765432
Q ss_pred cCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccc
Q 038338 284 EGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE 363 (421)
Q Consensus 284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 363 (421)
..++|+.|.+++|.+..+|.. +++|+.|+++.+ .+.. +| ..+++|+.|++++|.+. .+
T Consensus 199 ------------~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N-~L~~-lp---~~l~~L~~L~Ls~N~L~---~l 256 (622)
T 3g06_A 199 ------------LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN-RLTS-LP---VLPSELKELMVSGNRLT---SL 256 (622)
T ss_dssp ------------CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSC-CC---CCCTTCCEEECCSSCCS---CC
T ss_pred ------------ccchhhEEECcCCcccccCCC--CCCCCEEEccCC-ccCc-CC---CCCCcCcEEECCCCCCC---cC
Confidence 236889999999988888764 478999998744 3332 33 45688999999998754 23
Q ss_pred hhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 364 NDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
|. . +++|++|++++|... .+|..+. ++++|+.|++.+|+
T Consensus 257 p~---~-~~~L~~L~Ls~N~L~-~lp~~l~---~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 257 PM---L-PSGLLSLSVYRNQLT-RLPESLI---HLSSETTVNLEGNP 295 (622)
T ss_dssp CC---C-CTTCCEEECCSSCCC-SCCGGGG---GSCTTCEEECCSCC
T ss_pred Cc---c-cccCcEEeCCCCCCC-cCCHHHh---hccccCEEEecCCC
Confidence 33 2 388999999998654 6776666 89999999999886
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=6e-20 Score=165.46 Aligned_cols=221 Identities=19% Similarity=0.226 Sum_probs=149.9
Q ss_pred EcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCC
Q 038338 131 SLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLE 209 (421)
Q Consensus 131 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~ 209 (421)
...+..+..+|.... ++++.|++++|.+ ..++...+.++++|++|++++|.+..++. .+..+++|++|++++|.+.
T Consensus 13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFYKIPDNLP-FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCccccCCCCC-CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 334444455554332 4678888888775 44554445778888888888888777543 5777888888888888877
Q ss_pred C--cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCc-ccchhhhcCCCCCcEEEcccCCCCCccccC
Q 038338 210 D--VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQ-VIAPNVISKLSRLEELYMDNSFSGWEKVEG 285 (421)
Q Consensus 210 ~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 285 (421)
. +..+.++++|++|++++|.+..++. .++.+++|++|++++|.... .+|.. ++.+++|++|++++|.+.....
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~-- 166 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC-- 166 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG--
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH--
Confidence 7 4677888888888888888876655 47788888888888864433 24544 7788888888888887766543
Q ss_pred CCCcChhhhcCCCCCC-EEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccc
Q 038338 286 GSNASLVELKRLTKLT-TLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL 361 (421)
Q Consensus 286 ~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 361 (421)
..+..+..++.|. .|++++|.+..++... ...+|+.|+++.+ .+....+..+..+++|+.|++++|.+....
T Consensus 167 ---~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 167 ---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ---GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ---HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccccC
Confidence 1123344444444 7888888887766554 3367888888743 344333344678899999999998865443
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=4.9e-21 Score=186.23 Aligned_cols=236 Identities=17% Similarity=0.082 Sum_probs=189.0
Q ss_pred CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEE
Q 038338 145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEIL 223 (421)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L 223 (421)
.+++|+.|++++|.+ ..++...|..+++|++|++++|.+...++ ++.+++|++|++++|.+.. +. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 456899999999986 44555556899999999999999987665 8999999999999999877 43 3899999
Q ss_pred EeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhc-CCCCCCE
Q 038338 224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELK-RLTKLTT 302 (421)
Q Consensus 224 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~ 302 (421)
++++|.+..++. ..+++|++|++++|...+..|. .++.+++|+.|++++|.+....+ ..+. .+++|+.
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--------~~l~~~l~~L~~ 173 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNF--------AELAASSDTLEH 173 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEG--------GGGGGGTTTCCE
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcCh--------HHHhhhCCcccE
Confidence 999999998765 3578999999999755444444 47899999999999999887655 4454 7899999
Q ss_pred EEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccc
Q 038338 303 LEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKL 382 (421)
Q Consensus 303 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (421)
|++++|.+..++....+++|+.|+++. +.+. .+|+.+..+++|+.|++++|.+. .+|.++..+ ++|+.|++++|
T Consensus 174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~-N~l~-~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~l~~l-~~L~~L~l~~N 247 (487)
T 3oja_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLA-FMGPEFQSAAGVTWISLRNNKLV---LIEKALRFS-QNLEHFDLRGN 247 (487)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCS-SCCC-EECGGGGGGTTCSEEECTTSCCC---EECTTCCCC-TTCCEEECTTC
T ss_pred EecCCCccccccccccCCCCCEEECCC-CCCC-CCCHhHcCCCCccEEEecCCcCc---ccchhhccC-CCCCEEEcCCC
Confidence 999999998887776779999999974 4444 35566889999999999998854 256666666 89999999999
Q ss_pred cCc-ccccccccccCCCCCccEEEEe
Q 038338 383 EGV-QNVVHELDDGEGFPRLKHLHVE 407 (421)
Q Consensus 383 ~~~-~~~~~~~~~~~~~~~L~~L~i~ 407 (421)
+.. ..++..+. .+++|+.+.+.
T Consensus 248 ~l~c~~~~~~~~---~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFS---KNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHT---TCHHHHHHHHH
T ss_pred CCcCcchHHHHH---hCCCCcEEecc
Confidence 876 45555444 67777777664
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=8.6e-22 Score=180.74 Aligned_cols=240 Identities=18% Similarity=0.135 Sum_probs=137.9
Q ss_pred CCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC--CChhhh-------cccCCcEEEcccccCCC--cccc
Q 038338 146 CPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS--LPSSLG-------RLINLQTLCLDWCQLED--VAAI 214 (421)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~-------~l~~L~~L~l~~~~~~~--~~~~ 214 (421)
.++|+.|++.+|.+ .+|..+... |++|++++|.+.. +|..+. .+.+|++|++++|.+.+ |..+
T Consensus 42 ~~~L~~l~l~~n~l---~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE---ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCCTT---CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCCceeEeeccccc---ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34556666666653 455554332 6666777666643 555444 56677777777777664 5554
Q ss_pred --cCcCCCCEEEeeCCCCcccchhhcCC-----CCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCC
Q 038338 215 --GQLKKLEILNLADSNIEQLPLEIGQL-----TGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGS 287 (421)
Q Consensus 215 --~~l~~L~~L~l~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 287 (421)
+.+++|++|++++|++..+|..++.+ ++|++|++++|. +..++...++.+++|++|++++|.+.....
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERG---- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence 66777777777777776666656555 677777777753 344443336677777777777766443210
Q ss_pred CcChhhh--cCCCCCCEEEEEecCccccCC---cc--cccCCceEEEEEcCCccchhh-hhhchhhhceeEEEcCCcccc
Q 038338 288 NASLVEL--KRLTKLTTLEIEVRDAEILLP---DF--VSVELQRYRIRIGDKLEYEID-QLLVKSEALRLMMLKGLEKVS 359 (421)
Q Consensus 288 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 359 (421)
.+..+ +.+++|++|++++|.+..++. .+ .+++|+.|+++.+ .+....| ..+..+++|+.|++++|.+.
T Consensus 191 --~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 191 --LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp --HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred --HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 01222 566777777777776653332 21 2367777777533 2322221 33445667777777776643
Q ss_pred cccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 360 ILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
.+|.++. ++|++|++++|.... +|. +. .+++|+.|++++++
T Consensus 267 --~ip~~~~---~~L~~L~Ls~N~l~~-~p~-~~---~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 --QVPKGLP---AKLSVLDLSYNRLDR-NPS-PD---ELPQVGNLSLKGNP 307 (312)
T ss_dssp --SCCSSCC---SEEEEEECCSSCCCS-CCC-TT---TSCEEEEEECTTCT
T ss_pred --hhhhhcc---CCceEEECCCCCCCC-Chh-Hh---hCCCCCEEeccCCC
Confidence 3343322 567777777765433 343 33 66777777776663
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=4.6e-19 Score=170.70 Aligned_cols=242 Identities=17% Similarity=0.137 Sum_probs=142.6
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 204 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 204 (421)
++++.|++++|.+..++... ++|++|++++|.+ ..+|. ++.+++|++|++++|.++.+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l--~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQL--EKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCC--SSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCC--CCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence 56666666666665544321 5677777777765 33552 467777777777777777666543 367777777
Q ss_pred cccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcccc
Q 038338 205 WCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVE 284 (421)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 284 (421)
+|.+...+.++++++|++|++++|.+..+|... ++|++|++++|. +..+|. ++.+++|++|++++|.+...+.
T Consensus 182 ~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~l~~- 254 (454)
T 1jl5_A 182 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPFLTTIYADNNLLKTLPD- 254 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCS-
T ss_pred CCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCCCCEEECCCCcCCcccc-
Confidence 777776225777777777777777777666432 477777777753 346663 6777778888877776654321
Q ss_pred CCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccc--hhhh-------------hhchh-hhce
Q 038338 285 GGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEY--EIDQ-------------LLVKS-EALR 348 (421)
Q Consensus 285 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-------------~~~~l-~~L~ 348 (421)
..++|+.|++++|.+..+|.. .++|+.|+++.+. ... ..|. .+..+ ++|+
T Consensus 255 -----------~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~ 320 (454)
T 1jl5_A 255 -----------LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 320 (454)
T ss_dssp -----------CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred -----------cccccCEEECCCCcccccCcc--cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCC
Confidence 124555555555555444432 2444444443221 111 0000 01122 4677
Q ss_pred eEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecC
Q 038338 349 LMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 349 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
.|++++|.+.. .|.. +++|++|++++|... .+|. .+++|+.|++++|+
T Consensus 321 ~L~Ls~N~l~~---lp~~----~~~L~~L~L~~N~l~-~lp~------~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 321 ELNVSNNKLIE---LPAL----PPRLERLIASFNHLA-EVPE------LPQNLKQLHVEYNP 368 (454)
T ss_dssp EEECCSSCCSC---CCCC----CTTCCEEECCSSCCS-CCCC------CCTTCCEEECCSSC
T ss_pred EEECCCCcccc---cccc----CCcCCEEECCCCccc-cccc------hhhhccEEECCCCC
Confidence 77777766432 2222 267777777777543 4443 45788888888774
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=2e-19 Score=162.92 Aligned_cols=195 Identities=22% Similarity=0.217 Sum_probs=157.4
Q ss_pred cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338 121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 200 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 200 (421)
...+++++.+++.++.+..+|.... ++++.|++++|.+ ..++...|..+++|++|++++|.++.++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 4566788999999988888876543 6899999999986 445444568899999999999998887664 78889999
Q ss_pred EEcccccCCC-cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338 201 LCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 201 L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 278 (421)
|++++|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++| .+..++...+..+++|+.|++++|.+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcC
Confidence 9999999888 8888899999999999999998874 5888999999999986 45567776678889999999999888
Q ss_pred CCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEE
Q 038338 279 GWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIR 328 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 328 (421)
...+. ..+..+++|+.|++++|.+..+|..+ ..++|+.+++.
T Consensus 161 ~~l~~--------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 161 TELPA--------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp SCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred CccCH--------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 76554 45677889999999999888888765 33667777765
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=4.5e-19 Score=162.18 Aligned_cols=191 Identities=18% Similarity=0.220 Sum_probs=143.1
Q ss_pred cCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcE
Q 038338 121 ETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQT 200 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 200 (421)
...++++++|++.++.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.++.++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 344668888888888887777666788888888888875 44544 477888888888888887765 4778888888
Q ss_pred EEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 201 LCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 201 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
|++++|.+.....+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+..
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc
Confidence 88888888774447888888888888888887765 778888888888886 4445554 6788888888888887765
Q ss_pred ccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEc
Q 038338 281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIG 330 (421)
Q Consensus 281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 330 (421)
.. .+..+++|+.|++++|.+..+++...+++|+.|++..+
T Consensus 188 ~~----------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 188 IS----------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CG----------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred Ch----------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 42 26777888888888888777665335577777777644
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=7e-19 Score=157.86 Aligned_cols=179 Identities=22% Similarity=0.322 Sum_probs=134.0
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCL 203 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 203 (421)
...+.++++++.+..+|.... ++++.|++++|.+ ..++...|.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 356788888888877775433 5788888888875 455555567888888888888888887665 467888888888
Q ss_pred ccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 204 DWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 204 ~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
++|.+.. +..+.++++|++|++++|.+..++.. +..+++|++|++++| .+..++...++.+++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcE
Confidence 8888877 35567888888888888888877654 678888888888885 4556666556788888888888887766
Q ss_pred ccccCCCCcChhhhcCCCCCCEEEEEecCccccCC
Q 038338 281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP 315 (421)
Q Consensus 281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 315 (421)
.+. ..+..+++|+.|++++|.+..+|.
T Consensus 172 ~~~--------~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 172 VPE--------GAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CCT--------TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred eCh--------hHhccCCCcCEEECCCCcCCcCCH
Confidence 544 446777888888888777766654
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.7e-18 Score=166.68 Aligned_cols=250 Identities=19% Similarity=0.155 Sum_probs=180.5
Q ss_pred cCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEc
Q 038338 124 RKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCL 203 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 203 (421)
.++++.|++++|.+..+|.. .++|+.|++++|.+ ..++. ..++|++|++++|.++.+| .++.+.+|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l--~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL--KALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCC--SCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCcc--CcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 57899999999999778753 48999999999986 34442 1378999999999999988 5999999999999
Q ss_pred ccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338 204 DWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK 282 (421)
Q Consensus 204 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 282 (421)
++|.++. |..+ .+|++|++++|++..+| .++.+++|++|++++|. +..+|. ..++|++|++++|.+...+
T Consensus 161 ~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~----~~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 161 DNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPD----LPLSLESIVAGNNILEELP 231 (454)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCC----CCTTCCEEECCSSCCSSCC
T ss_pred CCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCC----CcCcccEEECcCCcCCccc
Confidence 9999888 6543 58999999999999988 68999999999999974 445554 2358999999999877332
Q ss_pred ccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccccc
Q 038338 283 VEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQ 362 (421)
Q Consensus 283 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 362 (421)
.++.+++|++|++++|.+..+|.. .++|+.|+++.+. ... +|. .+++|+.|++++|.+.....
T Consensus 232 ----------~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~-l~~-l~~---~~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 232 ----------ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNY-LTD-LPE---LPQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp ----------CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSEESC
T ss_pred ----------ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCc-ccc-cCc---ccCcCCEEECcCCccCcccC
Confidence 377899999999999999888764 4899999997443 332 332 23678888888876533111
Q ss_pred chhHH-------------HHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeec
Q 038338 363 ENDGT-------------KMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIV 416 (421)
Q Consensus 363 ~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 416 (421)
.+..+ ..+.++|++|++++|... .++. .+++|+.|++++| +++.++
T Consensus 295 ~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~-~lp~------~~~~L~~L~L~~N-~l~~lp 353 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA------LPPRLERLIASFN-HLAEVP 353 (454)
T ss_dssp CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC------CCTTCCEEECCSS-CCSCCC
T ss_pred cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc-cccc------cCCcCCEEECCCC-cccccc
Confidence 11000 011135555555554432 2322 3577777777776 455443
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=3.1e-19 Score=163.22 Aligned_cols=193 Identities=21% Similarity=0.273 Sum_probs=157.2
Q ss_pred ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCcccccCcCCCCE
Q 038338 143 RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222 (421)
Q Consensus 143 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 222 (421)
...+++|+.|+++++.+ ..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+...+.+.++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i--~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGV--TTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCc--cCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCE
Confidence 34678999999999875 45553 4789999999999999988887 8999999999999999888667899999999
Q ss_pred EEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCE
Q 038338 223 LNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTT 302 (421)
Q Consensus 223 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 302 (421)
|++++|++..++. +..+++|++|++++| .+..++. ++.+++|+.|++++|.+.... .+..+++|+.
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~----------~l~~l~~L~~ 177 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDLT----------PLANLSKLTT 177 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCE
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCCh----------hhcCCCCCCE
Confidence 9999999998865 889999999999996 4455655 788999999999998876542 2788899999
Q ss_pred EEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcc
Q 038338 303 LEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK 357 (421)
Q Consensus 303 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 357 (421)
|++++|.+..++....+++|+.|+++.+. ... .+ .+..+++|+.|++++|.+
T Consensus 178 L~l~~n~l~~~~~l~~l~~L~~L~L~~N~-l~~-~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 178 LKADDNKISDISPLASLPNLIEVHLKNNQ-ISD-VS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECTTSC-CCB-CG-GGTTCTTCCEEEEEEEEE
T ss_pred EECCCCccCcChhhcCCCCCCEEEccCCc-cCc-cc-cccCCCCCCEEEccCCee
Confidence 99999998887764466889999887443 332 22 378888999999988775
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.7e-18 Score=171.99 Aligned_cols=237 Identities=16% Similarity=0.154 Sum_probs=191.8
Q ss_pred CCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEccc
Q 038338 126 DPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDW 205 (421)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 205 (421)
+++.++++++.+..+|.... ++|+.|++++|.+ ..+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC--SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCC--CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 57899999999998887555 8999999999986 46665 47999999999999999887 679999999999
Q ss_pred ccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcccc
Q 038338 206 CQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVE 284 (421)
Q Consensus 206 ~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 284 (421)
|.++. |. .+++|+.|++++|+++.+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.++..+
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred CcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCCc--
Confidence 99988 55 678999999999999999874 589999999997 4555654 3578999999999877542
Q ss_pred CCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccch
Q 038338 285 GGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQEN 364 (421)
Q Consensus 285 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 364 (421)
..+++|+.|++++|.+..+|.. .++|+.|++..+ .+. .+|. .+++|+.|++++|.+.. +|
T Consensus 178 ----------~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N-~l~-~l~~---~~~~L~~L~Ls~N~L~~---lp 237 (622)
T 3g06_A 178 ----------MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNN-RLT-SLPA---LPSGLKELIVSGNRLTS---LP 237 (622)
T ss_dssp ----------CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSS-CCS-SCCC---CCTTCCEEECCSSCCSC---CC
T ss_pred ----------ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCC-ccc-ccCC---CCCCCCEEEccCCccCc---CC
Confidence 3468999999999999988864 488999999744 333 2332 35899999999988543 33
Q ss_pred hHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeecc
Q 038338 365 DGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVG 417 (421)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 417 (421)
.. +++|++|++++|.. +.+|. .+++|+.|++++| +|..+++
T Consensus 238 ---~~-l~~L~~L~Ls~N~L-~~lp~------~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 238 ---VL-PSELKELMVSGNRL-TSLPM------LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp ---CC-CTTCCEEECCSSCC-SCCCC------CCTTCCEEECCSS-CCCSCCG
T ss_pred ---CC-CCcCcEEECCCCCC-CcCCc------ccccCcEEeCCCC-CCCcCCH
Confidence 22 48999999999865 45554 5789999999998 6777754
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=7e-21 Score=184.47 Aligned_cols=233 Identities=17% Similarity=0.132 Sum_probs=104.3
Q ss_pred ccCCCccEEEccCCCCCC-CChhhh-----cccCCcEEEcccccCCC------cccccCcCCCCEEEeeCCCCccc-chh
Q 038338 170 EGTEELKVLSLIGIHFSS-LPSSLG-----RLINLQTLCLDWCQLED------VAAIGQLKKLEILNLADSNIEQL-PLE 236 (421)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~-lp~~i~-----~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~~l-p~~ 236 (421)
..+++|++|++++|.+.. .+..+. ...+|++|++++|.+.. +..+..+++|++|++++|.+... +..
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence 445555555555555432 111111 12345555555555443 22334445555555555554411 111
Q ss_pred hc-----CCCCCCEEeccCCcCCcc----cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhh-hcCCCCCCEEEEE
Q 038338 237 IG-----QLTGLRLLDLTNCWSLQV----IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVE-LKRLTKLTTLEIE 306 (421)
Q Consensus 237 ~~-----~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~ 306 (421)
+. ..++|++|++++|..... ++.. +..+++|++|++++|.+..... ..+... ...+++|++|+++
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~----~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLGDVGM----AELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHHH----HHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCcCChHHH----HHHHHHHhcCCCCceEEECc
Confidence 11 234555555555432221 2222 4455555555555554332211 000011 1235566666666
Q ss_pred ecCccc-----cCCcc-cccCCceEEEEEcCCccchhhhhhchh-----hhceeEEEcCCcccccc--cchhHHHHhhhc
Q 038338 307 VRDAEI-----LLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKS-----EALRLMMLKGLEKVSIL--QENDGTKMLLQR 373 (421)
Q Consensus 307 ~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~ 373 (421)
+|.++. ++..+ .+++|+.|+++.+ ......+..+... ++|++|++++|.+.... ..+.++... ++
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~ 342 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN-RF 342 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-SS
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC-CC
Confidence 665543 33333 2366666666532 2222222222221 46666666666542221 133444454 77
Q ss_pred ccEEEeccccCcccccccccc--cCCCCCccEEEEeec
Q 038338 374 TEDLWLVKLEGVQNVVHELDD--GEGFPRLKHLHVESC 409 (421)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~--~~~~~~L~~L~i~~c 409 (421)
|++|++++|......+..+.. ....++|+.|++++|
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 777777777543322222210 012567778877777
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=3.5e-19 Score=159.99 Aligned_cols=184 Identities=20% Similarity=0.260 Sum_probs=122.2
Q ss_pred EcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC
Q 038338 131 SLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED 210 (421)
Q Consensus 131 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 210 (421)
.+..+.+........+++++.|++.++.+ ..++. +..+++|++|++++|.+..++ .++.+++|++|++++|.++.
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 25 NLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHTCSCTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred HhcCcccccccccccccceeeeeeCCCCc--ccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc
Confidence 33334443333334677788888877764 33443 366788888888888777654 57777888888888887777
Q ss_pred --cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCC
Q 038338 211 --VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGS 287 (421)
Q Consensus 211 --~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 287 (421)
+..++++++|++|++++|++..+|.. ++.+++|++|++++| .+..++...++.+++|++|++++|.+...+.
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 174 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPE---- 174 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCH----
Confidence 34467778888888888877766654 577788888888776 4445555546777788888887777665443
Q ss_pred CcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEE
Q 038338 288 NASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIR 328 (421)
Q Consensus 288 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 328 (421)
..++.+++|+.|++++|.+..++... .+++|+.|++.
T Consensus 175 ----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 175 ----GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ----HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 44667777777777777776555432 23555555553
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=3.1e-19 Score=160.32 Aligned_cols=207 Identities=23% Similarity=0.221 Sum_probs=165.1
Q ss_pred ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCC
Q 038338 120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINL 198 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L 198 (421)
....+++++.+.+.++.+..++....+++|+.|++++|.+ ..++ .+..+++|++|++++|.++.++.. ++.+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 3456789999999999998888878999999999999986 3343 358899999999999999987654 6899999
Q ss_pred cEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEccc
Q 038338 199 QTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDN 275 (421)
Q Consensus 199 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 275 (421)
++|++++|.+.. +..++++++|++|++++|+++.+|.. ++.+++|++|++++|. +..++...++.+++|++|++++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCC
Confidence 999999999988 45589999999999999999988765 5899999999999974 5566666578999999999999
Q ss_pred CCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhh
Q 038338 276 SFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSE 345 (421)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 345 (421)
|.+...++ ..++.+++|+.|++++|.+..- +++|+.+++. .+.....+|.+++.++
T Consensus 191 N~l~~~~~--------~~~~~l~~L~~L~l~~N~~~~~-----~~~l~~l~~~-~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 191 NQLKSVPD--------GVFDRLTSLQYIWLHDNPWDCT-----CPGIRYLSEW-INKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCSCCCT--------TTTTTCTTCCEEECCSSCBCCC-----TTTTHHHHHH-HHHTGGGBBCTTSCBC
T ss_pred CcCCccCH--------HHHhCCcCCCEEEccCCCcccc-----CcHHHHHHHH-HHhCCCcccCcccccC
Confidence 98887654 5678899999999999976422 2345555543 2233334555555443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=156.64 Aligned_cols=199 Identities=23% Similarity=0.246 Sum_probs=161.8
Q ss_pred CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC-c-ccccCcCCCCEE
Q 038338 147 PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED-V-AAIGQLKKLEIL 223 (421)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L 223 (421)
...+.++++++.+ ..+|..+ .+++++|++++|.+..++. .+..+++|++|++++|.++. + ..+.++++|++|
T Consensus 16 ~~~~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKL--TAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCC--CccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 3578899998885 5677654 4789999999999988765 68999999999999999988 4 446889999999
Q ss_pred EeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCE
Q 038338 224 NLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTT 302 (421)
Q Consensus 224 ~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 302 (421)
++++|.+..+|.. +..+++|++|++++| .+..++...++.+++|++|++++|.+...+. ..++.+++|+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~ 161 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------GVFDKLTSLKE 161 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCE
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCH--------hHccCCcccce
Confidence 9999999988765 688999999999996 4556666557899999999999998876654 45788999999
Q ss_pred EEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCccccc
Q 038338 303 LEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSI 360 (421)
Q Consensus 303 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 360 (421)
|++++|.+..++... .+++|+.|+++.+ .+....+..+..+++|+.|++++|.+...
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999998887653 4589999999744 44433344578899999999999886433
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.5e-20 Score=182.11 Aligned_cols=275 Identities=16% Similarity=0.106 Sum_probs=188.9
Q ss_pred CCeEEEcCCCCCcc-----CCccc-CCCCccEEEeeecCCCCcccCh----HHhccCCCccEEEccCCCCCC-----CCh
Q 038338 126 DPIAISLPQRNIQE-----LPERL-QCPNLQLFLLFRQGYGPVQISD----LFFEGTEELKVLSLIGIHFSS-----LPS 190 (421)
Q Consensus 126 ~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~-----lp~ 190 (421)
++++|++++|.+.. ++... .+++|+.|++++|.+ ....+. .++...++|++|++++|.++. ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 68999999998852 34333 788999999999886 322222 222335679999999998865 456
Q ss_pred hhhcccCCcEEEcccccCCC--ccccc-----CcCCCCEEEeeCCCCcc-----cchhhcCCCCCCEEeccCCcCCcc--
Q 038338 191 SLGRLINLQTLCLDWCQLED--VAAIG-----QLKKLEILNLADSNIEQ-----LPLEIGQLTGLRLLDLTNCWSLQV-- 256 (421)
Q Consensus 191 ~i~~l~~L~~L~l~~~~~~~--~~~~~-----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~-- 256 (421)
.+..+++|++|++++|.+.. +..+. ..++|++|++++|.++. ++..+..+++|++|++++|.....
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 67778999999999998766 44443 35689999999998884 577788899999999998743221
Q ss_pred --cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcccc-----CCcc--cccCCceEEE
Q 038338 257 --IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL-----LPDF--VSVELQRYRI 327 (421)
Q Consensus 257 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~--~~~~L~~L~l 327 (421)
+.......+++|++|++++|.++.... ..+...+..+++|++|++++|.++.. ...+ ..++|+.|++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGC----GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHH----HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 122223368899999999987765421 11235577788999999998887422 1111 1158899988
Q ss_pred EEcCCccc---hhhhhhchhhhceeEEEcCCcccccccchhHHHHh----hhcccEEEeccccCcc----cccccccccC
Q 038338 328 RIGDKLEY---EIDQLLVKSEALRLMMLKGLEKVSILQENDGTKML----LQRTEDLWLVKLEGVQ----NVVHELDDGE 396 (421)
Q Consensus 328 ~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~ 396 (421)
..+..... .++..+..+++|+.|++++|.+.. ..+..+... .++|++|++++|.... .++..+.
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--- 395 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED--AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL--- 395 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH---
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc--ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH---
Confidence 75543322 245667778899999999987432 222333331 2589999999887653 5555554
Q ss_pred CCCCccEEEEeecC
Q 038338 397 GFPRLKHLHVESCY 410 (421)
Q Consensus 397 ~~~~L~~L~i~~c~ 410 (421)
.+++|++|++++|+
T Consensus 396 ~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 396 ANHSLRELDLSNNC 409 (461)
T ss_dssp HCCCCCEEECCSSS
T ss_pred hCCCccEEECCCCC
Confidence 68889999988874
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=9.1e-19 Score=158.60 Aligned_cols=200 Identities=19% Similarity=0.199 Sum_probs=170.2
Q ss_pred cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccccCCCcccccCcCCCCE
Q 038338 144 LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222 (421)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 222 (421)
.++++++.+++.++.+ ..+|..+ .+++++|++++|.+..+ +..+..+.+|++|++++|.++.....+.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNL--TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCC--SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred cccCCccEEECCCCCC--CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 3778999999999885 6777654 47899999999999885 5679999999999999999988333489999999
Q ss_pred EEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCE
Q 038338 223 LNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTT 302 (421)
Q Consensus 223 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 302 (421)
|++++|++..+|..+..+++|++|++++| .+..++...+..+++|++|++++|.+...+. ..+..+++|+.
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~ 152 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEK 152 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCE
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccCh--------hhcccccCCCE
Confidence 99999999999999999999999999996 5567776668999999999999999887655 55788999999
Q ss_pred EEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccc
Q 038338 303 LEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVS 359 (421)
Q Consensus 303 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 359 (421)
|++++|.+..+|... .+++|+.|+++. +.+. .+|..+..+++|+.|.+++|.+..
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQE-NSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCC-CcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 999999999988765 469999999973 4444 567778888999999999988643
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=1.7e-18 Score=155.93 Aligned_cols=207 Identities=20% Similarity=0.190 Sum_probs=141.5
Q ss_pred cccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccc-hhh
Q 038338 162 VQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLP-LEI 237 (421)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~ 237 (421)
..+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.+.. +..+.++++|++|++++|.+..++ ..+
T Consensus 20 ~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 20 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp SSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 4556543 3578999999999888655 68889999999999998887 457889999999999999988766 458
Q ss_pred cCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc-
Q 038338 238 GQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD- 316 (421)
Q Consensus 238 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~- 316 (421)
..+++|++|++++|.. ..++...++.+++|++|++++|.+.... +...++.+++|++|++++|.+..++..
T Consensus 97 ~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 97 SGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK-------LPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp TTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCC-------CCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred cCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccceec-------CchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 8899999999988644 4444433788899999999998876532 125688889999999999888766543
Q ss_pred c-cccCCc----eEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccC
Q 038338 317 F-VSVELQ----RYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEG 384 (421)
Q Consensus 317 ~-~~~~L~----~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (421)
+ ..++|+ .|+++. +... .++.......+|+.|++++|.+... .+..+..+ ++|++|++++|+.
T Consensus 169 ~~~l~~L~~l~l~L~ls~-n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l-~~L~~L~l~~N~~ 236 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSL-NPMN-FIQPGAFKEIRLKELALDTNQLKSV--PDGIFDRL-TSLQKIWLHTNPW 236 (276)
T ss_dssp GHHHHTCTTCCEEEECCS-SCCC-EECTTSSCSCCEEEEECCSSCCSCC--CTTTTTTC-CSCCEEECCSSCB
T ss_pred hhhhhhccccceeeecCC-Cccc-ccCccccCCCcccEEECCCCceeec--CHhHhccc-ccccEEEccCCcc
Confidence 2 234455 455542 2222 2222233334677777776663211 11223444 6666777666554
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.4e-18 Score=152.94 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=106.5
Q ss_pred cCCCeEEEcCCCCCccCCc--ccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccC-CCCCCCC-hhhhcccCCc
Q 038338 124 RKDPIAISLPQRNIQELPE--RLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIG-IHFSSLP-SSLGRLINLQ 199 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~ 199 (421)
..+++.|+++++.+..++. ...+++|+.|++++|.. ...++...|.++++|++|++++ |.++.+| ..+..+++|+
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 3456666666666655543 22566666666666642 2444444445666666666665 5665544 3455566666
Q ss_pred EEEcccccCCC-cccccCcCCCC---EEEeeCC-CCcccchh-hcCCCCCC-EEeccCCcCCcccchhhhcCCCCCcEEE
Q 038338 200 TLCLDWCQLED-VAAIGQLKKLE---ILNLADS-NIEQLPLE-IGQLTGLR-LLDLTNCWSLQVIAPNVISKLSRLEELY 272 (421)
Q Consensus 200 ~L~l~~~~~~~-~~~~~~l~~L~---~L~l~~~-~l~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 272 (421)
+|++++|.++. |. +..+++|+ +|++++| .+..+|.. +..+++|+ +|++++|. +..+|...+.. ++|++|+
T Consensus 109 ~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEE
T ss_pred EEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEE
Confidence 66666666655 33 55555555 6666666 66655543 55666666 66666643 33555543333 5666666
Q ss_pred cccCC-CCCccccCCCCcChhhhcCC-CCCCEEEEEecCccccCCcccccCCceEEE
Q 038338 273 MDNSF-SGWEKVEGGSNASLVELKRL-TKLTTLEIEVRDAEILLPDFVSVELQRYRI 327 (421)
Q Consensus 273 l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 327 (421)
+++|. +...+. ..+..+ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus 186 L~~n~~l~~i~~--------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 186 LNKNKYLTVIDK--------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp CTTCTTCCEECT--------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred cCCCCCcccCCH--------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 66663 543332 334555 5666666666666555544 3455555544
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=1.4e-19 Score=167.86 Aligned_cols=248 Identities=15% Similarity=0.144 Sum_probs=183.4
Q ss_pred CCeEEEcCCCCCccCCccc-CC--CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC--CChhhhcccCCcE
Q 038338 126 DPIAISLPQRNIQELPERL-QC--PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS--LPSSLGRLINLQT 200 (421)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~ 200 (421)
..++++++++.+. +... .+ ++++.|++.++.+ .+..+. + .++++|++|++++|.+.. +|..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-DQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-CSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccc-cccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4678899887763 1112 44 7899999999876 333333 3 468999999999998764 7778889999999
Q ss_pred EEcccccCCC--cccccCcCCCCEEEeeCC-CCc--ccchhhcCCCCCCEEeccCCcCCcc--cchhhhcCCC-CCcEEE
Q 038338 201 LCLDWCQLED--VAAIGQLKKLEILNLADS-NIE--QLPLEIGQLTGLRLLDLTNCWSLQV--IAPNVISKLS-RLEELY 272 (421)
Q Consensus 201 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~-~L~~L~ 272 (421)
|++++|.+.+ +..++++++|++|++++| .++ .++..+..+++|++|++++|..+.. ++. .+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEE
Confidence 9999999876 788899999999999999 677 4777788999999999999844443 343 378899 999999
Q ss_pred cccCC--CCCccccCCCCcChhhhcCCCCCCEEEEEecC-cc-ccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhc
Q 038338 273 MDNSF--SGWEKVEGGSNASLVELKRLTKLTTLEIEVRD-AE-ILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEAL 347 (421)
Q Consensus 273 l~~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 347 (421)
+++|. ++.. .+...+..+++|++|++++|. ++ ..+..+ .+++|+.|++..+..........++.+++|
T Consensus 202 l~~~~~~~~~~-------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 202 LSGYRKNLQKS-------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp CCSCGGGSCHH-------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred eCCCcccCCHH-------HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 99983 3311 223567789999999999998 43 444444 559999999976654443334467889999
Q ss_pred eeEEEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccc
Q 038338 348 RLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHEL 392 (421)
Q Consensus 348 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 392 (421)
+.|++++| + ....+..+...|+.|++++|...+..+...
T Consensus 275 ~~L~l~~~-i-----~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 275 KTLQVFGI-V-----PDGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CEEECTTS-S-----CTTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CEEeccCc-c-----CHHHHHHHHhhCcceEEecccCccccCCcc
Confidence 99999996 1 122344443557888888887766666544
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=9.9e-18 Score=151.89 Aligned_cols=177 Identities=22% Similarity=0.274 Sum_probs=151.3
Q ss_pred ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338 120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 199 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 199 (421)
....+++++.++++++.+..++....+++|+.|++++|.+ ..++. +.++++|++|++++|.++.+|. ++.+++|+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 3456788999999999998888777999999999999986 44554 5889999999999999988765 89999999
Q ss_pred EEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338 200 TLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG 279 (421)
Q Consensus 200 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 279 (421)
+|++++|.+...+.+..+++|++|++++|++..+ ..+..+++|++|++++| .+..++. +..+++|+.|++++|.+.
T Consensus 116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC
Confidence 9999999998877889999999999999999988 57899999999999997 4555655 789999999999999877
Q ss_pred CccccCCCCcChhhhcCCCCCCEEEEEecCccccCC
Q 038338 280 WEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP 315 (421)
Q Consensus 280 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 315 (421)
.. ..+..+++|+.|++++|.+...|.
T Consensus 192 ~l----------~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 192 DL----------RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp BC----------GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred CC----------hhhccCCCCCEEECcCCcccCCcc
Confidence 54 348889999999999998765543
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=4e-19 Score=168.04 Aligned_cols=257 Identities=16% Similarity=0.122 Sum_probs=161.1
Q ss_pred cCccCCCeEEEcCCCCCcc-----CCc-ccCCCCccEEEeeecCCC--CcccChHH------hccCCCccEEEccCCCCC
Q 038338 121 ETIRKDPIAISLPQRNIQE-----LPE-RLQCPNLQLFLLFRQGYG--PVQISDLF------FEGTEELKVLSLIGIHFS 186 (421)
Q Consensus 121 ~~~~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~--~~~~~~~~------~~~l~~L~~L~l~~~~~~ 186 (421)
+..++++++|++++|.+.. ++. ...+++|+.|++++|... .+.+|..+ +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3456678888888887733 222 226788888888876430 22333332 356788888888888876
Q ss_pred C-----CChhhhcccCCcEEEcccccCCC--ccc----ccCc---------CCCCEEEeeCCCCc--ccc---hhhcCCC
Q 038338 187 S-----LPSSLGRLINLQTLCLDWCQLED--VAA----IGQL---------KKLEILNLADSNIE--QLP---LEIGQLT 241 (421)
Q Consensus 187 ~-----lp~~i~~l~~L~~L~l~~~~~~~--~~~----~~~l---------~~L~~L~l~~~~l~--~lp---~~~~~l~ 241 (421)
. +|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|++. .+| ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 56677788888888888888764 333 3333 78888888888775 444 4566788
Q ss_pred CCCEEeccCCcCCcc----cchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccc-----
Q 038338 242 GLRLLDLTNCWSLQV----IAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEI----- 312 (421)
Q Consensus 242 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----- 312 (421)
+|++|++++|..... +.+..+..+++|++|++++|.++... ...++..+..+++|+.|++++|.++.
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 888888888643311 22213667888888888887764211 01223567777888888888887653
Q ss_pred cCCcc---cccCCceEEEEEcCCccc----hhhhhh-chhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccc
Q 038338 313 LLPDF---VSVELQRYRIRIGDKLEY----EIDQLL-VKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKL 382 (421)
Q Consensus 313 ~~~~~---~~~~L~~L~l~~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (421)
++..+ .+++|+.|+++.+ .+.. .+|..+ .++++|++|++++|.+.........+...++.++.+.+...
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 23333 1477777777633 3333 255555 45677778887777754433323455555566666555443
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=4.1e-19 Score=162.72 Aligned_cols=198 Identities=16% Similarity=0.128 Sum_probs=113.5
Q ss_pred CCCccEEEccCCCCCC-CChhh--hcccCCcEEEcccccCCC--c----ccccCcCCCCEEEeeCCCCcccc-hhhcCCC
Q 038338 172 TEELKVLSLIGIHFSS-LPSSL--GRLINLQTLCLDWCQLED--V----AAIGQLKKLEILNLADSNIEQLP-LEIGQLT 241 (421)
Q Consensus 172 l~~L~~L~l~~~~~~~-lp~~i--~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~ 241 (421)
+++|++|++++|.+.. .|..+ ..+.+|++|++++|.+.. + ..+..+++|++|++++|++..++ ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3557777777776654 44444 666777777777776654 2 23345667777777777766554 3466677
Q ss_pred CCCEEeccCCcCCcc--cch-hhhcCCCCCcEEEcccCCCCCccccCCCCcChh-hhcCCCCCCEEEEEecCcccc-CCc
Q 038338 242 GLRLLDLTNCWSLQV--IAP-NVISKLSRLEELYMDNSFSGWEKVEGGSNASLV-ELKRLTKLTTLEIEVRDAEIL-LPD 316 (421)
Q Consensus 242 ~L~~L~l~~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~ 316 (421)
+|++|++++|...+. ++. ..++.+++|++|++++|.++.... ... .++.+++|++|++++|.+... |..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------VCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH------HHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH------HHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 777777777643332 211 112466677777777766643221 011 235666777777777776544 433
Q ss_pred c-cc---cCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEeccccC
Q 038338 317 F-VS---VELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEG 384 (421)
Q Consensus 317 ~-~~---~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (421)
+ .+ ++|+.|+++. +.+. .+|..+. ++|+.|++++|.+... +. +..+ ++|++|++++|+.
T Consensus 244 ~~~~~~~~~L~~L~Ls~-N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~---~~~l-~~L~~L~L~~N~l 306 (310)
T 4glp_A 244 APRCMWSSALNSLNLSF-AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ---PDEL-PEVDNLTLDGNPF 306 (310)
T ss_dssp CSSCCCCTTCCCEECCS-SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC---TTSC-CCCSCEECSSTTT
T ss_pred HHhccCcCcCCEEECCC-CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch---hhhC-CCccEEECcCCCC
Confidence 3 22 5677777753 3333 3444443 6777777777764321 11 2333 7777777777764
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.7e-18 Score=152.38 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=127.4
Q ss_pred CccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-CCCCCh-hhhcccCCcEEEccc-ccCCC--c
Q 038338 137 IQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-FSSLPS-SLGRLINLQTLCLDW-CQLED--V 211 (421)
Q Consensus 137 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~--~ 211 (421)
+..+|. -.++++.|++++|.+ ..++...|..+++|++|++++|. ++.++. .+..+++|++|++++ |.++. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 455555 234777788877775 45555555777778888888775 766554 567777777777777 67766 3
Q ss_pred ccccCcCCCCEEEeeCCCCcccchhhcCCCCCC---EEeccCCcCCcccchhhhcCCCCCc-EEEcccCCCCCccccCCC
Q 038338 212 AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLR---LLDLTNCWSLQVIAPNVISKLSRLE-ELYMDNSFSGWEKVEGGS 287 (421)
Q Consensus 212 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 287 (421)
..+.++++|++|++++|+++.+|. +..+++|+ +|++++|..+..++...+..+++|+ +|++++|.+...+.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~---- 173 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG---- 173 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----
Confidence 567777777777777777777765 66666666 7777775455566655566677777 77777666553322
Q ss_pred CcChhhhcCCCCCCEEEEEecC-ccccCCcccccCCceEEEEEcCCccchhhhhhchh-hhceeEEEcCCcccccccchh
Q 038338 288 NASLVELKRLTKLTTLEIEVRD-AEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKS-EALRLMMLKGLEKVSILQEND 365 (421)
Q Consensus 288 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~ 365 (421)
..+.. ++|+.|++++|. ++.++. ..+..+ ++|+.|++++|.+.. .|.
T Consensus 174 ----~~~~~-~~L~~L~L~~n~~l~~i~~-----------------------~~~~~l~~~L~~L~l~~N~l~~---l~~ 222 (239)
T 2xwt_C 174 ----YAFNG-TKLDAVYLNKNKYLTVIDK-----------------------DAFGGVYSGPSLLDVSQTSVTA---LPS 222 (239)
T ss_dssp ----TTTTT-CEEEEEECTTCTTCCEECT-----------------------TTTTTCSBCCSEEECTTCCCCC---CCC
T ss_pred ----hhcCC-CCCCEEEcCCCCCcccCCH-----------------------HHhhccccCCcEEECCCCcccc---CCh
Confidence 12222 456666665553 444432 234555 667777777766421 222
Q ss_pred HHHHhhhcccEEEecccc
Q 038338 366 GTKMLLQRTEDLWLVKLE 383 (421)
Q Consensus 366 ~~~~~~~~L~~L~l~~~~ 383 (421)
. .+++|+.|++.++.
T Consensus 223 ~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 223 K---GLEHLKELIARNTW 237 (239)
T ss_dssp T---TCTTCSEEECTTC-
T ss_pred h---HhccCceeeccCcc
Confidence 2 23677777776654
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=6.7e-19 Score=163.26 Aligned_cols=249 Identities=15% Similarity=0.095 Sum_probs=184.5
Q ss_pred CccEEEeeecCCCCcccChHHhccC--CCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC---cccccCcCCCCE
Q 038338 148 NLQLFLLFRQGYGPVQISDLFFEGT--EELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED---VAAIGQLKKLEI 222 (421)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~ 222 (421)
.++.++++++.+ . ...+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. +..+..+++|++
T Consensus 48 ~~~~l~l~~~~~-~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNL-H----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBC-C----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccC-C----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 478899988765 2 2334556 89999999999988866667889999999999999764 677899999999
Q ss_pred EEeeCCCCc-ccchhhcCCCCCCEEeccCCcCCcc--cchhhhcCCCCCcEEEcccC-CCCCccccCCCCcChhhhcCCC
Q 038338 223 LNLADSNIE-QLPLEIGQLTGLRLLDLTNCWSLQV--IAPNVISKLSRLEELYMDNS-FSGWEKVEGGSNASLVELKRLT 298 (421)
Q Consensus 223 L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~ 298 (421)
|++++|.+. ..|..+..+++|++|++++|..+.. ++. .+..+++|++|++++| .++... ....+..++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~~~l~ 194 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKH-------VQVAVAHVS 194 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHH-------HHHHHHHSC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHH-------HHHHHHhcc
Confidence 999999988 6777899999999999999855553 444 3788999999999998 766431 125678899
Q ss_pred -CCCEEEEEecC--c--cccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhh
Q 038338 299 -KLTTLEIEVRD--A--EILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQ 372 (421)
Q Consensus 299 -~L~~L~l~~~~--~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 372 (421)
+|++|++++|. + ..++..+ .+++|+.|++..+.......+..+..+++|+.|++++|. .........+.++ +
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~-~ 272 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEI-P 272 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGC-T
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcC-C
Confidence 99999999985 3 3455554 569999999986654555667788999999999999985 1222222346665 9
Q ss_pred cccEEEeccccCcccccccccccCCCCCccEEEEeecCceeeeccc
Q 038338 373 RTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYEIVHIVGS 418 (421)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~ 418 (421)
+|++|++++| ........+ . .+|+.|++. |+++..+.++
T Consensus 273 ~L~~L~l~~~-i~~~~~~~l--~---~~l~~L~l~-~n~l~~~~~~ 311 (336)
T 2ast_B 273 TLKTLQVFGI-VPDGTLQLL--K---EALPHLQIN-CSHFTTIARP 311 (336)
T ss_dssp TCCEEECTTS-SCTTCHHHH--H---HHSTTSEES-CCCSCCTTCS
T ss_pred CCCEEeccCc-cCHHHHHHH--H---hhCcceEEe-cccCccccCC
Confidence 9999999998 222111111 1 224445564 4567665543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.3e-17 Score=147.96 Aligned_cols=176 Identities=23% Similarity=0.313 Sum_probs=140.2
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCL 203 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l 203 (421)
...++++++++.+..+|.... ++++.|++++|.+ ..++...+.++++|++|++++|.++.++. .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 345678888888888876544 6889999999886 44555446888999999999998887544 4788999999999
Q ss_pred ccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 204 DWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 204 ~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
++|.+.. +..+..+++|++|++++|+++.+|.. +..+++|++|++++| .+..++...++.+++|++|++++|.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999888 46678899999999999999888776 578999999999986 5556666557888999999999988876
Q ss_pred ccccCCCCcChhhhcCCCCCCEEEEEecCccc
Q 038338 281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEI 312 (421)
Q Consensus 281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 312 (421)
.++ ..+..+++|+.|++++|.+..
T Consensus 170 ~~~--------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPH--------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCT--------TTTTTCTTCCEEECCSCCBCT
T ss_pred cCH--------HHHhCCCCCCEEEeeCCceeC
Confidence 654 457788889999998888753
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=4.3e-19 Score=167.82 Aligned_cols=264 Identities=13% Similarity=0.051 Sum_probs=176.7
Q ss_pred ccCCccc-CCCCccEEEeeecCCCCcccCh---HHhccCCCccEEEccCCCCCC----CChhh-------hcccCCcEEE
Q 038338 138 QELPERL-QCPNLQLFLLFRQGYGPVQISD---LFFEGTEELKVLSLIGIHFSS----LPSSL-------GRLINLQTLC 202 (421)
Q Consensus 138 ~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~----lp~~i-------~~l~~L~~L~ 202 (421)
..+.... .+++|+.|++++|.+ ....+. ..+..+++|++|++++|.+.. +|..+ ..+++|++|+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEE-CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCCCccEEECCCCCC-CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3444333 778899999999876 332222 224678999999999876543 45444 6788999999
Q ss_pred cccccCCC------cccccCcCCCCEEEeeCCCCc-----ccchhhcCC---------CCCCEEeccCCcCC-cccch--
Q 038338 203 LDWCQLED------VAAIGQLKKLEILNLADSNIE-----QLPLEIGQL---------TGLRLLDLTNCWSL-QVIAP-- 259 (421)
Q Consensus 203 l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l---------~~L~~L~l~~~~~~-~~~~~-- 259 (421)
+++|.+.. +..+.++++|++|++++|.+. .++..+..+ ++|++|++++|... ..++.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99998765 356788899999999999886 233344445 89999999987554 23331
Q ss_pred hhhcCCCCCcEEEcccCCCCCccccCCCCcChh-hhcCCCCCCEEEEEecCc-----cccCCcc-cccCCceEEEEEcCC
Q 038338 260 NVISKLSRLEELYMDNSFSGWEKVEGGSNASLV-ELKRLTKLTTLEIEVRDA-----EILLPDF-VSVELQRYRIRIGDK 332 (421)
Q Consensus 260 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~~~~~-~~~~L~~L~l~~~~~ 332 (421)
..+..+++|++|++++|.+..... ..... .+..+++|+.|++++|.+ ..+|..+ .+++|+.|+++.+.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~----~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~- 255 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGI----EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL- 255 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHH----HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-
T ss_pred HHHHhCCCcCEEECcCCCCCHhHH----HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-
Confidence 236688899999999987763210 01123 677889999999999987 4455554 44889999987443
Q ss_pred ccch----hhhhhc--hhhhceeEEEcCCccccc--ccchhHH-HHhhhcccEEEeccccCccccc--ccccccCCCCCc
Q 038338 333 LEYE----IDQLLV--KSEALRLMMLKGLEKVSI--LQENDGT-KMLLQRTEDLWLVKLEGVQNVV--HELDDGEGFPRL 401 (421)
Q Consensus 333 ~~~~----~~~~~~--~l~~L~~L~l~~~~~~~~--~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~L 401 (421)
+... ++..+. .+++|+.|++++|.+... ..++..+ .++ ++|++|++++|+.....+ ..+ ...++++
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l-~~L~~L~l~~N~l~~~~~~~~~l--~~~l~~~ 332 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM-PDLLFLELNGNRFSEEDDVVDEI--REVFSTR 332 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC-TTCCEEECTTSBSCTTSHHHHHH--HHHHHHH
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC-CCceEEEccCCcCCcchhHHHHH--HHHhhhc
Confidence 3322 345553 388899999999875321 1345555 344 899999999888765442 222 2356666
Q ss_pred cEEEEeecC
Q 038338 402 KHLHVESCY 410 (421)
Q Consensus 402 ~~L~i~~c~ 410 (421)
+.+++....
T Consensus 333 ~~~~l~~~d 341 (386)
T 2ca6_A 333 GRGELDELD 341 (386)
T ss_dssp TCCEECCCC
T ss_pred Ccchhhhcc
Confidence 666665443
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=3.8e-18 Score=170.54 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=51.5
Q ss_pred ccCCCeEEEcCCCCCcc-----CCccc-CCCCccEEEeeecCCCC---cccChHHhccCCCccEEEccCCCCCCCChhhh
Q 038338 123 IRKDPIAISLPQRNIQE-----LPERL-QCPNLQLFLLFRQGYGP---VQISDLFFEGTEELKVLSLIGIHFSSLPSSLG 193 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~ 193 (421)
.++++++|++++|.+.. ++... .+++|+.|+++++.. . ......++.++++|++|++++|.+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC-CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 56778888888776522 22222 677788888877765 2 01112234567888888888877666666666
Q ss_pred cccCCcEEEccc
Q 038338 194 RLINLQTLCLDW 205 (421)
Q Consensus 194 ~l~~L~~L~l~~ 205 (421)
.+++|++|+++.
T Consensus 241 ~~~~L~~L~l~~ 252 (592)
T 3ogk_B 241 AAANLEEFCGGS 252 (592)
T ss_dssp HCTTCCEEEECB
T ss_pred hhhHHHhhcccc
Confidence 666666666653
No 89
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=8.6e-18 Score=167.96 Aligned_cols=271 Identities=14% Similarity=0.092 Sum_probs=161.2
Q ss_pred ccCCCeEEEcCCCCCcc-----CCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccC--------------
Q 038338 123 IRKDPIAISLPQRNIQE-----LPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIG-------------- 182 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-------------- 182 (421)
.+++++.|+++++.+.. ++... ++++|+.|++.+|.. ..++. .+..+++|+.|+++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI--LELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG--GGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH--HHHHH-HHhhhhHHHhhcccccccccchHHHHHHh
Confidence 46788888888877642 22222 678888888888764 33443 345666666666653
Q ss_pred -------------CCCCCCChhhhcccCCcEEEcccccCCC--c-ccccCcCCCCEEEeeCCCCc--ccchhhcCCCCCC
Q 038338 183 -------------IHFSSLPSSLGRLINLQTLCLDWCQLED--V-AAIGQLKKLEILNLADSNIE--QLPLEIGQLTGLR 244 (421)
Q Consensus 183 -------------~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~ 244 (421)
+....+|..+..+++|++|++++|.+.. + ..+..+++|++|++++ .+. .++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCC
Confidence 2223345555666777777777777554 2 3356677777777773 232 3333345677777
Q ss_pred EEeccC----------CcCCcccc-hhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcC-CCCCCEEEEEe----c
Q 038338 245 LLDLTN----------CWSLQVIA-PNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKR-LTKLTTLEIEV----R 308 (421)
Q Consensus 245 ~L~l~~----------~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~----~ 308 (421)
+|++++ |+.+.... ......+++|++|+++.+.++.... ..++. +++|+.|++.+ +
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~--------~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL--------ESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH--------HHHHHHCCSCCEEEEEECSCCS
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH--------HHHHhhCCCCcEEEEeecCCCc
Confidence 777774 44443321 1223457777777776666554332 44444 77888888863 3
Q ss_pred CccccCCc------c-cccCCceEEEEEcCC-ccchhhhhhc-hhhhceeEEEcCCcccccccchhHHHHhhhcccEEEe
Q 038338 309 DAEILLPD------F-VSVELQRYRIRIGDK-LEYEIDQLLV-KSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWL 379 (421)
Q Consensus 309 ~~~~~~~~------~-~~~~L~~L~l~~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 379 (421)
.++..|.. + .+++|+.|+++.|.. .....+..++ .+++|+.|++++|.+. ....+..+..+ ++|++|++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~-~~L~~L~l 495 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-DEGLMEFSRGC-PNLQKLEM 495 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-HHHHHHHHTCC-TTCCEEEE
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-HHHHHHHHhcC-cccCeeec
Confidence 44443321 2 357888888865432 3333334443 3778888888887632 12233334444 78888888
Q ss_pred ccccCccc-ccccccccCCCCCccEEEEeecC
Q 038338 380 VKLEGVQN-VVHELDDGEGFPRLKHLHVESCY 410 (421)
Q Consensus 380 ~~~~~~~~-~~~~~~~~~~~~~L~~L~i~~c~ 410 (421)
++|..... ++... ..+++|+.|++++|.
T Consensus 496 ~~n~l~~~~~~~~~---~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 496 RGCCFSERAIAAAV---TKLPSLRYLWVQGYR 524 (592)
T ss_dssp ESCCCBHHHHHHHH---HHCSSCCEEEEESCB
T ss_pred cCCCCcHHHHHHHH---HhcCccCeeECcCCc
Confidence 88874322 22222 367888888888886
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=8.4e-17 Score=145.79 Aligned_cols=181 Identities=20% Similarity=0.229 Sum_probs=142.4
Q ss_pred cCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCCc
Q 038338 132 LPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLEDV 211 (421)
Q Consensus 132 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 211 (421)
+....+..+.....+++|+.|++++|.+ ..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..+
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred hcCCCcccccchhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence 3344443333344778899999998875 45544 4778999999999999988877 88899999999999998886
Q ss_pred ccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcCh
Q 038338 212 AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASL 291 (421)
Q Consensus 212 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 291 (421)
+.+..+++|++|++++|++..+ +.+..+++|++|++++|. +..++. ++.+++|++|++++|.+....
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~~--------- 172 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDIV--------- 172 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCCG---------
T ss_pred hhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccccch---------
Confidence 6689999999999999998887 468889999999999864 445533 788999999999998876543
Q ss_pred hhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEcC
Q 038338 292 VELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGD 331 (421)
Q Consensus 292 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 331 (421)
.+..+++|+.|++++|.++.++....+++|+.|++..+.
T Consensus 173 -~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 -PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred -hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 277889999999999988887764466888888887543
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.2e-16 Score=141.74 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=93.8
Q ss_pred ccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338 149 LQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNL 225 (421)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 225 (421)
.+.++++++.+ ..+|..+ .+.+++|++++|.+..++ ..+..+++|++|++++|.+.. +..+.++++|++|++
T Consensus 16 ~~~l~~~~~~l--~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKSL--DSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCCC--SSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CeEEecCCCCc--cccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 44555555543 4444433 245666666666665533 245556666666666666555 344556666666666
Q ss_pred eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338 226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304 (421)
Q Consensus 226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 304 (421)
++|++..+|.. +..+++|++|++++| .+..++...++.+++|++|++++|.+...++ ..++.+++|+.|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~ 161 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--------GAFDKLTNLQTLS 161 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred CCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCH--------HHcCcCcCCCEEE
Confidence 66666655433 455666666666654 3344444434555666666666655554433 3355555556666
Q ss_pred EEecCccccCCcccccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcc
Q 038338 305 IEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK 357 (421)
Q Consensus 305 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 357 (421)
+++|.+..++. ..+..+++|+.|++++|.+
T Consensus 162 L~~N~l~~~~~-----------------------~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 162 LSTNQLQSVPH-----------------------GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCSSCCSCCCT-----------------------TTTTTCTTCCEEECCSCCB
T ss_pred CCCCcCCccCH-----------------------HHHhCCCCCCEEEeeCCce
Confidence 55555544433 3355566666666666664
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=6.8e-17 Score=160.32 Aligned_cols=177 Identities=22% Similarity=0.270 Sum_probs=148.6
Q ss_pred ccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCc
Q 038338 120 EETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQ 199 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 199 (421)
....+.+++.|+++++.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.+..+| .+..+++|+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 3456778999999999998888777999999999999986 44444 578999999999999998876 588999999
Q ss_pred EEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338 200 TLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG 279 (421)
Q Consensus 200 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 279 (421)
+|++++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +..+++ +..+++|+.|++++|.+.
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC
Confidence 9999999988877789999999999999999987 578999999999999974 445554 789999999999999876
Q ss_pred CccccCCCCcChhhhcCCCCCCEEEEEecCccccCC
Q 038338 280 WEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLP 315 (421)
Q Consensus 280 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 315 (421)
.. ..+..+++|+.|++++|.+...|.
T Consensus 189 ~l----------~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 DL----------RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp BC----------GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CC----------hHHccCCCCCEEEccCCcCcCCcc
Confidence 54 348889999999999988765443
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=5.8e-17 Score=150.98 Aligned_cols=236 Identities=14% Similarity=0.098 Sum_probs=119.6
Q ss_pred EEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CCh-hhhcccCCcE-EEccc
Q 038338 129 AISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPS-SLGRLINLQT-LCLDW 205 (421)
Q Consensus 129 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~-~i~~l~~L~~-L~l~~ 205 (421)
.++.+++.+..+|..+ .++++.|++++|.+ ..++...|.++++|++|++++|.+.+ +|. .+..+.+++. +.+..
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444445555555332 23455555555553 44444444555555555555555433 332 2344444443 33333
Q ss_pred ccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcc
Q 038338 206 CQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEK 282 (421)
Q Consensus 206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 282 (421)
|.+.. +..+..+++|++|++++|++..+|.. +....++..+++.++..+..++...+..+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~---------------- 153 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS---------------- 153 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB----------------
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc----------------
Confidence 44444 34445555555555555555544332 223344444444444444444433222222
Q ss_pred ccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccc
Q 038338 283 VEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSIL 361 (421)
Q Consensus 283 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 361 (421)
..++.|++++|.++.++... ...+|+.+.+..++......+..+..+++|+.|++++|.+.
T Consensus 154 ---------------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--- 215 (350)
T 4ay9_X 154 ---------------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--- 215 (350)
T ss_dssp ---------------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC---
T ss_pred ---------------hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC---
Confidence 23445555555555554443 22445555554333333222234677788888888887643
Q ss_pred cchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEee
Q 038338 362 QENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVES 408 (421)
Q Consensus 362 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~ 408 (421)
.+|.+ .+.+|+.|.+.++..++.+|. .+.|++|+.+++.+
T Consensus 216 ~lp~~---~~~~L~~L~~l~~~~l~~lP~----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 216 SLPSY---GLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTY 255 (350)
T ss_dssp CCCSS---SCTTCCEEECTTCTTCCCCCC----TTTCCSCCEEECSC
T ss_pred ccChh---hhccchHhhhccCCCcCcCCC----chhCcChhhCcCCC
Confidence 22321 236778888877777777774 33788888887754
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.2e-17 Score=156.49 Aligned_cols=250 Identities=13% Similarity=0.054 Sum_probs=158.5
Q ss_pred EEcCCCCC-ccCCcccCCC-CccEEEeeecCCCCcccCh----HHhccCC-CccEEEccCCCCCCC-Chhhhcc-----c
Q 038338 130 ISLPQRNI-QELPERLQCP-NLQLFLLFRQGYGPVQISD----LFFEGTE-ELKVLSLIGIHFSSL-PSSLGRL-----I 196 (421)
Q Consensus 130 l~l~~~~~-~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~ 196 (421)
..++.+.+ +.+|.....+ +|+.|++++|.+ ...+. ..+..++ +|++|++++|.++.. +..+..+ .
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 45666666 3455555444 499999998885 44443 4457777 899999999988764 4556554 8
Q ss_pred CCcEEEcccccCCC--ccc----ccCc-CCCCEEEeeCCCCcccch-h----hcC-CCCCCEEeccCCcCCc----ccch
Q 038338 197 NLQTLCLDWCQLED--VAA----IGQL-KKLEILNLADSNIEQLPL-E----IGQ-LTGLRLLDLTNCWSLQ----VIAP 259 (421)
Q Consensus 197 ~L~~L~l~~~~~~~--~~~----~~~l-~~L~~L~l~~~~l~~lp~-~----~~~-l~~L~~L~l~~~~~~~----~~~~ 259 (421)
+|++|++++|.+.. +.. +..+ ++|++|++++|.++..+. . +.. .++|++|++++|.... .++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 89999999998776 333 4444 789999999998885543 2 333 3689999998874432 2222
Q ss_pred hhhcCCC-CCcEEEcccCCCCCccccCCCCcChhhhcCC-CCCCEEEEEecCccc-----cCCccc--ccCCceEEEEEc
Q 038338 260 NVISKLS-RLEELYMDNSFSGWEKVEGGSNASLVELKRL-TKLTTLEIEVRDAEI-----LLPDFV--SVELQRYRIRIG 330 (421)
Q Consensus 260 ~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~~--~~~L~~L~l~~~ 330 (421)
. +..++ +|++|++++|.++.... ..+...+..+ ++|++|++++|.++. ++..+. .++|+.|+++.+
T Consensus 161 ~-l~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 161 I-LAAIPANVNSLNLRGNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp H-HHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred H-HhcCCccccEeeecCCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 2 45555 89999998887654432 1223445566 489999998888765 444442 257888888744
Q ss_pred CCccc---hhhhhhchhhhceeEEEcCCccccccc-----chhHHHHhhhcccEEEeccccCccc
Q 038338 331 DKLEY---EIDQLLVKSEALRLMMLKGLEKVSILQ-----ENDGTKMLLQRTEDLWLVKLEGVQN 387 (421)
Q Consensus 331 ~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (421)
..... .+...+..+++|+.|++++|.+..... .+..+..+ ++|+.|++++|..-..
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l-~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI-QKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC-CEEEEECTTSCBCCGG
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC-CceEEEecCCCcCCCc
Confidence 33221 123445667888888888866321111 11122233 6677777777765433
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1e-16 Score=160.15 Aligned_cols=273 Identities=13% Similarity=0.065 Sum_probs=139.2
Q ss_pred ccCCCeEEEcCCCCCcc-----CCccc-CCCCccEEEeeecC--CCCcccChHHhccCCCccEEEccCC-CCCCCChhhh
Q 038338 123 IRKDPIAISLPQRNIQE-----LPERL-QCPNLQLFLLFRQG--YGPVQISDLFFEGTEELKVLSLIGI-HFSSLPSSLG 193 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~ 193 (421)
.++++++|++++|.+.. ++... .+++|+.|+++++. . .......+...+++|++|++++| .+..+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV-SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCC-CHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcC-CHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 45667777777665421 22222 56677777776664 1 11112222344677777777766 2222444444
Q ss_pred cccCCcEEEcccccC--------------------------C-----C-cccccCcCCCCEEEeeCCCCc--ccchhhcC
Q 038338 194 RLINLQTLCLDWCQL--------------------------E-----D-VAAIGQLKKLEILNLADSNIE--QLPLEIGQ 239 (421)
Q Consensus 194 ~l~~L~~L~l~~~~~--------------------------~-----~-~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~ 239 (421)
.+++|++|+++.+.. . . +..+..+++|++|++++|.+. .++..+..
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~ 312 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhc
Confidence 444555554332210 0 0 111124566666666666544 12222445
Q ss_pred CCCCCEEeccCCcCCcccchhhhcCCCCCcEEEc----------------------------------ccCCCCCccccC
Q 038338 240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYM----------------------------------DNSFSGWEKVEG 285 (421)
Q Consensus 240 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l----------------------------------~~~~~~~~~~~~ 285 (421)
+++|++|++++| ............+++|++|++ ..+.++...
T Consensus 313 ~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~--- 388 (594)
T 2p1m_B 313 CPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA--- 388 (594)
T ss_dssp CTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH---
T ss_pred CCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH---
Confidence 566666666554 111111111223555555555 333332221
Q ss_pred CCCcChhhhc-CCCCCCEEEEEe------cCccccCCc------c-cccCCceEEEEEcCCccchhhhhhch-hhhceeE
Q 038338 286 GSNASLVELK-RLTKLTTLEIEV------RDAEILLPD------F-VSVELQRYRIRIGDKLEYEIDQLLVK-SEALRLM 350 (421)
Q Consensus 286 ~~~~~~~~l~-~l~~L~~L~l~~------~~~~~~~~~------~-~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L 350 (421)
...+. .+++|+.|++.. +.++..|.. + .+++|+.|+++ +......+..++. +++|+.|
T Consensus 389 -----~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~--~~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 389 -----LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS--GLLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp -----HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC--SSCCHHHHHHHHHHCTTCCEE
T ss_pred -----HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec--CcccHHHHHHHHHhchhccEe
Confidence 12232 466777777762 223332221 1 34677777773 2334344444544 7888888
Q ss_pred EEcCCcccccccchhHHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEEeecCc
Q 038338 351 MLKGLEKVSILQENDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHVESCYE 411 (421)
Q Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~ 411 (421)
++++|.+. ......+..-+++|++|++++|+........+ ..++++|+.|++++|+.
T Consensus 462 ~L~~~~i~--~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 462 SVAFAGDS--DLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN--ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEESCCSS--HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT--GGGGGGSSEEEEESSCC
T ss_pred eccCCCCc--HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH--HHhCCCCCEEeeeCCCC
Confidence 88887742 22233332224899999999998743333222 34689999999999864
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.2e-16 Score=134.52 Aligned_cols=147 Identities=18% Similarity=0.235 Sum_probs=69.9
Q ss_pred ccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCcEE
Q 038338 123 IRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQTL 201 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L 201 (421)
.+++++.++++++.+..++....+++|+.|++++|.. ..++ . +..+++|++|++++|.++. .|..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455556666555555555433555555555555532 2222 1 2445555555555555543 34444555555555
Q ss_pred EcccccCCC--cccccCcCCCCEEEeeCCC-CcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCC
Q 038338 202 CLDWCQLED--VAAIGQLKKLEILNLADSN-IEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSF 277 (421)
Q Consensus 202 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 277 (421)
++++|.+.. +..++++++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcc
Confidence 555555443 4444555555555555554 44443 34445555555554432 223331 3444445555544443
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=147.49 Aligned_cols=220 Identities=12% Similarity=0.041 Sum_probs=165.2
Q ss_pred CCCeEEEcCCCCCc--c---CCcccCCCCccEEEeeecCCCCcccChHHh-ccCCCccEEEccCCCCCC-CC----hhhh
Q 038338 125 KDPIAISLPQRNIQ--E---LPERLQCPNLQLFLLFRQGYGPVQISDLFF-EGTEELKVLSLIGIHFSS-LP----SSLG 193 (421)
Q Consensus 125 ~~l~~l~l~~~~~~--~---l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-lp----~~i~ 193 (421)
..++.+.+.+..+. . +.....+++|+.|++++|.+ .+..+..++ ..+++|++|++++|.+.. .+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35678888877662 1 22233567799999999987 556665544 778999999999999876 23 2345
Q ss_pred cccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcc---cchh--hcCCCCCCEEeccCCcCCcccch---hhhc
Q 038338 194 RLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQ---LPLE--IGQLTGLRLLDLTNCWSLQVIAP---NVIS 263 (421)
Q Consensus 194 ~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~---lp~~--~~~l~~L~~L~l~~~~~~~~~~~---~~l~ 263 (421)
.+++|++|++++|.+.. +..++.+++|++|++++|++.. ++.. ++.+++|++|++++|.. ..++. ..++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHh
Confidence 68999999999999887 5788999999999999998763 4333 46899999999999744 44443 2357
Q ss_pred CCCCCcEEEcccCCCCCccccCCCCcChhhhcCC---CCCCEEEEEecCccccCCcccccCCceEEEEEcCCccchhhhh
Q 038338 264 KLSRLEELYMDNSFSGWEKVEGGSNASLVELKRL---TKLTTLEIEVRDAEILLPDFVSVELQRYRIRIGDKLEYEIDQL 340 (421)
Q Consensus 264 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 340 (421)
.+++|++|++++|.+....+ ..+..+ ++|++|++++|.++.+|..+. ++|+.|+++.+.... +|.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~--~~~- 289 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN--------PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNR--APQ- 289 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC--------SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCS--CCC-
T ss_pred cCCCCCEEECCCCCCCccch--------hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCC--Cch-
Confidence 88999999999998877633 223343 799999999999998888764 899999997444332 222
Q ss_pred hchhhhceeEEEcCCccc
Q 038338 341 LVKSEALRLMMLKGLEKV 358 (421)
Q Consensus 341 ~~~l~~L~~L~l~~~~~~ 358 (421)
+..+++|+.|++++|.+.
T Consensus 290 ~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTSCCCCSCEECSSTTTS
T ss_pred hhhCCCccEEECcCCCCC
Confidence 677899999999998753
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=3.2e-16 Score=133.50 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=111.0
Q ss_pred CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC--cccccCcCCCCE
Q 038338 145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEI 222 (421)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~ 222 (421)
.+++|+.|++++|.+ ..++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINV--TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCC--SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCc--cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 567788888888875 4555 2 467888888888888666554 57778888888888888776 777888888888
Q ss_pred EEeeCCCCcc-cchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC
Q 038338 223 LNLADSNIEQ-LPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT 301 (421)
Q Consensus 223 L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 301 (421)
|++++|++.. .|..+..+++|++|++++|..++.++. +..+++|++|++++|.+... ..+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------~~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------RGIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------TTGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------HHhccCCCCC
Confidence 8888888773 566778888888888888765666663 67888888888888776543 2467778888
Q ss_pred EEEEEecCcc
Q 038338 302 TLEIEVRDAE 311 (421)
Q Consensus 302 ~L~l~~~~~~ 311 (421)
.|++++|.++
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 8888877764
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=1.4e-17 Score=155.88 Aligned_cols=233 Identities=12% Similarity=0.137 Sum_probs=166.6
Q ss_pred CccCCCeEEEcCCCCCccCCc-----c-cCCC-CccEEEeeecCCCCcccChHHhccC-----CCccEEEccCCCCCCCC
Q 038338 122 TIRKDPIAISLPQRNIQELPE-----R-LQCP-NLQLFLLFRQGYGPVQISDLFFEGT-----EELKVLSLIGIHFSSLP 189 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~-----~-~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp 189 (421)
...+++++|++++|.+...+. . ..++ +|+.|++++|.+ .......+..+ ++|++|++++|.++..+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 345569999999999966653 2 2788 999999999986 33332223443 99999999999998643
Q ss_pred -hh----hhcc-cCCcEEEcccccCCC--ccc----ccCc-CCCCEEEeeCCCCc-----ccchhhcCCC-CCCEEeccC
Q 038338 190 -SS----LGRL-INLQTLCLDWCQLED--VAA----IGQL-KKLEILNLADSNIE-----QLPLEIGQLT-GLRLLDLTN 250 (421)
Q Consensus 190 -~~----i~~l-~~L~~L~l~~~~~~~--~~~----~~~l-~~L~~L~l~~~~l~-----~lp~~~~~l~-~L~~L~l~~ 250 (421)
.. +..+ .+|++|++++|.+.. +.. +..+ ++|++|++++|.+. .++..+..++ +|++|++++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 33 4444 899999999999877 333 3443 69999999999888 5556666776 999999999
Q ss_pred CcCCcccchh---hhcCC-CCCcEEEcccCCCCCccccCCCCcChhhhcC-CCCCCEEEEEecCccccCCc-----c-cc
Q 038338 251 CWSLQVIAPN---VISKL-SRLEELYMDNSFSGWEKVEGGSNASLVELKR-LTKLTTLEIEVRDAEILLPD-----F-VS 319 (421)
Q Consensus 251 ~~~~~~~~~~---~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~-----~-~~ 319 (421)
|......+.. .+... ++|++|++++|.++.... ..+...+.. .++|++|++++|.++..+.. + ..
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY----AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 7543333321 24455 599999999998765322 223355655 45999999999998765431 1 34
Q ss_pred cCCceEEEEEcCC--cc----chhhhhhchhhhceeEEEcCCccccc
Q 038338 320 VELQRYRIRIGDK--LE----YEIDQLLVKSEALRLMMLKGLEKVSI 360 (421)
Q Consensus 320 ~~L~~L~l~~~~~--~~----~~~~~~~~~l~~L~~L~l~~~~~~~~ 360 (421)
++|+.|+++.+.. .. ..++..+..+++|+.|++++|.+...
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8999999986541 11 12345677889999999999886443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.5e-15 Score=149.14 Aligned_cols=194 Identities=19% Similarity=0.200 Sum_probs=140.3
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 204 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 204 (421)
.+++.|+++++.+..+|... +++|+.|++++|.+ ..+| ..+++|++|++++|.++.+|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l--~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL--ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC--cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 37889999999887787654 47899999999886 4666 347889999999998888887 655 89999999
Q ss_pred cccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338 205 WCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV 283 (421)
Q Consensus 205 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 283 (421)
+|.++. |. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|+.|++++|.++..+.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 998888 55 67889999999998888876 67889999998864 455766 44 888889988887774332
Q ss_pred cCCCCcChhhh-cCCCCCCEEEEEecCccccCCcc-cccCCceEEEEEcCCccchhhhhhchhhh
Q 038338 284 EGGSNASLVEL-KRLTKLTTLEIEVRDAEILLPDF-VSVELQRYRIRIGDKLEYEIDQLLVKSEA 346 (421)
Q Consensus 284 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 346 (421)
. ...+ ...+.|+.|++++|.+..+|..+ .+++|+.|+++ .+.+....|..+..++.
T Consensus 198 -~-----~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 198 -V-----PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE-DNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -C-----C--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC-SSSCCHHHHHHHHHHHH
T ss_pred -H-----HHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee-CCcCCCcCHHHHHHhhc
Confidence 1 1111 11223388888888888777765 44777777776 44455456666665544
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=3e-16 Score=155.73 Aligned_cols=182 Identities=20% Similarity=0.218 Sum_probs=137.5
Q ss_pred EEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCC
Q 038338 130 ISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLE 209 (421)
Q Consensus 130 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 209 (421)
+.+..+.+..+.....+++|+.|++++|.+ ..++. +..+++|+.|++++|.+..+++ +..+++|++|++++|.+.
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCC--CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCC--CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC
Confidence 344444444444444778888888888875 44543 4778899999999988888776 888888999999988888
Q ss_pred CcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCc
Q 038338 210 DVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNA 289 (421)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 289 (421)
.++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|. +..++. ++.+++|+.|++++|.+....+
T Consensus 101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~~~~------ 170 (605)
T 1m9s_A 101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDIVP------ 170 (605)
T ss_dssp CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCCCGG------
T ss_pred CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCCchh------
Confidence 8667888889999999988888764 58888889999998864 444532 7888889999988887765432
Q ss_pred ChhhhcCCCCCCEEEEEecCccccCCcccccCCceEEEEEc
Q 038338 290 SLVELKRLTKLTTLEIEVRDAEILLPDFVSVELQRYRIRIG 330 (421)
Q Consensus 290 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 330 (421)
+..+++|+.|++++|.+..++....+++|+.|++..+
T Consensus 171 ----l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 171 ----LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp ----GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred ----hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 7788888888888888877765445678888887543
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.4e-15 Score=149.32 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=149.6
Q ss_pred CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEe
Q 038338 147 PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNL 225 (421)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l 225 (421)
.+++.|++++|.+ ..+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++. |. +.+ +|++|++
T Consensus 59 ~~L~~L~Ls~n~L--~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNL--SSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCC--SCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCC--CccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 4899999999986 4477755 488999999999999988 557999999999999988 66 665 9999999
Q ss_pred eCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338 226 ADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI 305 (421)
Q Consensus 226 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 305 (421)
++|+++.+|. .+++|++|++++|. +..+|. .+++|++|++++|.++..+. +. ++|+.|++
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~lp~----------l~--~~L~~L~L 187 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFLPE----------LP--ESLEALDV 187 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCC----------CC--TTCCEEEC
T ss_pred CCCcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCcch----------hh--CCCCEEEC
Confidence 9999999987 78999999999964 455665 57899999999998876322 33 89999999
Q ss_pred EecCccccCCcccccCC-------ceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHh
Q 038338 306 EVRDAEILLPDFVSVEL-------QRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKML 370 (421)
Q Consensus 306 ~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 370 (421)
++|.++.+|. +. .+| +.|+++. +.+. .+|..+..+++|+.|++++|.+ ....|..+..+
T Consensus 188 s~N~L~~lp~-~~-~~L~~~~~~L~~L~Ls~-N~l~-~lp~~l~~l~~L~~L~L~~N~l--~~~~p~~l~~l 253 (571)
T 3cvr_A 188 STNLLESLPA-VP-VRNHHSEETEIFFRCRE-NRIT-HIPENILSLDPTCTIILEDNPL--SSRIRESLSQQ 253 (571)
T ss_dssp CSSCCSSCCC-CC---------CCEEEECCS-SCCC-CCCGGGGGSCTTEEEECCSSSC--CHHHHHHHHHH
T ss_pred cCCCCCchhh-HH-HhhhcccccceEEecCC-Ccce-ecCHHHhcCCCCCEEEeeCCcC--CCcCHHHHHHh
Confidence 9999998888 43 267 8898873 4444 5677788899999999999884 33456666665
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=8.5e-16 Score=136.95 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=117.7
Q ss_pred CCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcc
Q 038338 125 KDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLD 204 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 204 (421)
.++..+.+.++.+..++....+++|+.|++++|.+ ..++ . +..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 33444555556665555444677777777777764 4454 2 4667888888888887777766 7778888888888
Q ss_pred cccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCcccc
Q 038338 205 WCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVE 284 (421)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 284 (421)
+|.++..+.+.. ++|++|++++|+++.++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+...
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~~--- 165 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT--- 165 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCBC---
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcch---
Confidence 887777223333 77888888888877765 47778888888888753 455553 67788888888888776644
Q ss_pred CCCCcChhhhcCCCCCCEEEEEecCccccC
Q 038338 285 GGSNASLVELKRLTKLTTLEIEVRDAEILL 314 (421)
Q Consensus 285 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 314 (421)
..+..+++|+.|++++|.+...|
T Consensus 166 -------~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 -------GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -------HHhccCCCCCEEeCCCCcccCCc
Confidence 34677788888888888775544
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=2.6e-15 Score=130.93 Aligned_cols=151 Identities=24% Similarity=0.292 Sum_probs=121.5
Q ss_pred CeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEccc
Q 038338 127 PIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDW 205 (421)
Q Consensus 127 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~ 205 (421)
.+.++.+++.+..+|.... ++|+.|++++|.+ ..++...|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4467788888888876443 7899999999986 445444468899999999999999887754 68899999999999
Q ss_pred ccCCC-c-ccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCc
Q 038338 206 CQLED-V-AAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWE 281 (421)
Q Consensus 206 ~~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 281 (421)
|.++. + ..+..+++|++|++++|++..+|..+..+++|++|++++| .+..++...+..+++|+.|++++|.+...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 99888 4 4578899999999999999999988999999999999986 55666666678888999999988876543
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=5.6e-16 Score=133.18 Aligned_cols=170 Identities=19% Similarity=0.264 Sum_probs=112.5
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWC 206 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 206 (421)
+.++..++.+..+|... .++++.|++++|.+ ..++...+..+++|++|++++|.++.+|.. +..+.+|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555566665555432 45777888887775 455555557778888888888877776554 567778888888887
Q ss_pred cCCC-c-ccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccc
Q 038338 207 QLED-V-AAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKV 283 (421)
Q Consensus 207 ~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 283 (421)
.++. + ..++++++|++|++++|++..+|.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee----
Confidence 7776 3 3467778888888888777776654 567777888888775 344555554667777777777776432
Q ss_pred cCCCCcChhhhcCCCCCCEEEEEecCcc-ccCCc
Q 038338 284 EGGSNASLVELKRLTKLTTLEIEVRDAE-ILLPD 316 (421)
Q Consensus 284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~ 316 (421)
+.+++|+.|++..|.+. .+|..
T Consensus 162 -----------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 -----------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -----------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred -----------cCCCCHHHHHHHHHhCCceeecc
Confidence 33455666666655543 45544
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1e-16 Score=160.24 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=69.2
Q ss_pred ccCCCeEEEcCCCCCcc--CCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-----CChhhhc
Q 038338 123 IRKDPIAISLPQRNIQE--LPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-----LPSSLGR 194 (421)
Q Consensus 123 ~~~~l~~l~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~ 194 (421)
.++++++|+++++.+.. +.... .+++|+.|++.+|..........++.++++|++|++++|.++. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 35577777777766521 11222 4677777777776320111122333567777777777776543 2222235
Q ss_pred ccCCcEEEccccc--CCC---cccccCcCCCCEEEeeCC-CCcccchhhcCCCCCCEEecc
Q 038338 195 LINLQTLCLDWCQ--LED---VAAIGQLKKLEILNLADS-NIEQLPLEIGQLTGLRLLDLT 249 (421)
Q Consensus 195 l~~L~~L~l~~~~--~~~---~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~ 249 (421)
+++|++|++++|. +.. ..-+.++++|++|++++| .+..+|..+..+++|++|+++
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 5677777777765 221 122234577777777766 334455555555555555543
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.8e-15 Score=140.83 Aligned_cols=221 Identities=15% Similarity=0.153 Sum_probs=152.4
Q ss_pred cEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEeeCCCCc-ccchh-hcCCCCCCEEeccCC
Q 038338 176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNLADSNIE-QLPLE-IGQLTGLRLLDLTNC 251 (421)
Q Consensus 176 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~-~lp~~-~~~l~~L~~L~l~~~ 251 (421)
++++.+++.++.+|..+ ..++++|++++|.++. | ..++++++|++|++++|++. .+|.+ +.++++++++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45666667777777655 3567888888888777 4 45778888888888888764 45543 567777777655555
Q ss_pred cCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEec-CccccCCcc--cc-cCCceEEE
Q 038338 252 WSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVR-DAEILLPDF--VS-VELQRYRI 327 (421)
Q Consensus 252 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~--~~-~~L~~L~l 327 (421)
+.+..++++.+..+++|++|++++|.+...+. .......++..+++..+ .+..++... .. ..++.|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred CcccccCchhhhhccccccccccccccccCCc--------hhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 56677766667888888888888887765543 22334456667777653 466666542 22 56888888
Q ss_pred EEcCCccchhhhhhchhhhceeEEEcCCcccccccchh-HHHHhhhcccEEEeccccCcccccccccccCCCCCccEEEE
Q 038338 328 RIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQEND-GTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFPRLKHLHV 406 (421)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~i 406 (421)
+ .+.+. .++.......+|+.|.+.++. ....++. .+..+ ++|++|++++|.. +.+|. ..|.+|+.|.+
T Consensus 162 ~-~N~i~-~i~~~~f~~~~L~~l~l~~~n--~l~~i~~~~f~~l-~~L~~LdLs~N~l-~~lp~-----~~~~~L~~L~~ 230 (350)
T 4ay9_X 162 N-KNGIQ-EIHNSAFNGTQLDELNLSDNN--NLEELPNDVFHGA-SGPVILDISRTRI-HSLPS-----YGLENLKKLRA 230 (350)
T ss_dssp C-SSCCC-EECTTSSTTEEEEEEECTTCT--TCCCCCTTTTTTE-ECCSEEECTTSCC-CCCCS-----SSCTTCCEEEC
T ss_pred c-ccccc-CCChhhccccchhHHhhccCC--cccCCCHHHhccC-cccchhhcCCCCc-CccCh-----hhhccchHhhh
Confidence 6 34444 455556667889999998644 2333443 45666 9999999999864 55553 36889999999
Q ss_pred eecCceeeecc
Q 038338 407 ESCYEIVHIVG 417 (421)
Q Consensus 407 ~~c~~L~~l~~ 417 (421)
.+|.+++++++
T Consensus 231 l~~~~l~~lP~ 241 (350)
T 4ay9_X 231 RSTYNLKKLPT 241 (350)
T ss_dssp TTCTTCCCCCC
T ss_pred ccCCCcCcCCC
Confidence 99999998875
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=2.4e-15 Score=134.09 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=132.4
Q ss_pred cccCccCCCeEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCC
Q 038338 119 MEETIRKDPIAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINL 198 (421)
Q Consensus 119 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 198 (421)
+....+++++.|+++++.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.++.+|.... .+|
T Consensus 35 ~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L 108 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACL 108 (263)
T ss_dssp ECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSC
T ss_pred cchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--Ccc
Confidence 34566789999999999998888777999999999999986 55555 5889999999999999998876433 899
Q ss_pred cEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338 199 QTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 199 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 278 (421)
++|++++|.++..+.++.+++|++|++++|+++.++ .+..+++|++|++++|.. ..++ .+..+++|+.|++++|.+
T Consensus 109 ~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~~--~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 109 SRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI-TNTG--GLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC-CBCT--TSTTCCCCCEEEEEEEEE
T ss_pred cEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC-cchH--HhccCCCCCEEeCCCCcc
Confidence 999999999998667999999999999999999886 689999999999999754 4443 388999999999999876
Q ss_pred CCcc
Q 038338 279 GWEK 282 (421)
Q Consensus 279 ~~~~ 282 (421)
...+
T Consensus 185 ~~~~ 188 (263)
T 1xeu_A 185 VNEP 188 (263)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 5443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=3.4e-15 Score=129.37 Aligned_cols=149 Identities=16% Similarity=0.231 Sum_probs=88.5
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWC 206 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~ 206 (421)
+.++++++.+..+|... .+.++.|++++|.+ ....+...|..+++|++|++++|.++.++. .+..+.+|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 36677777766666433 23456677777665 222233444666777777777776666443 5666666777777666
Q ss_pred cCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338 207 QLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG 279 (421)
Q Consensus 207 ~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 279 (421)
.++. +..+..+++|++|++++|++..+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6665 34466666666666666666655 3446666666666666643 33333333566666666666665443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=4.8e-15 Score=128.43 Aligned_cols=147 Identities=22% Similarity=0.263 Sum_probs=88.8
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWC 206 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 206 (421)
+.++..++.+..+|.... ++++.|++++|.+ ..++...|..+++|++|++++|.+..+ |..+..+.+|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 356666666666664332 5667777777664 444444456666777777777766653 555666666777777766
Q ss_pred cCCC-c-ccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338 207 QLED-V-AAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 207 ~~~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 278 (421)
.++. | ..+..+++|++|++++|++..+ |..+..+++|++|++++| .+..++...+..+++|+.|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 6666 3 3346666666666666666655 334566666666666664 33444444455666666666666543
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=1e-15 Score=131.49 Aligned_cols=129 Identities=26% Similarity=0.321 Sum_probs=65.7
Q ss_pred CCCccEEEccCCCCCCCChh-hhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEe
Q 038338 172 TEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLD 247 (421)
Q Consensus 172 l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~ 247 (421)
.++|++|++++|.++.++.. ++.+.+|++|++++|.++. + ..+..+++|++|++++|+++.+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34556666666655554432 4555556666666555555 2 2345555566666655555555443 34555555555
Q ss_pred ccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecC
Q 038338 248 LTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRD 309 (421)
Q Consensus 248 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 309 (421)
+++| .+..++...+..+++|++|++++|.+...+. ..+..+++|+.|++++|.
T Consensus 107 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--------GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEECCSCC
T ss_pred cCCC-cCcccCHhHhccCCcCCEEECCCCccceeCH--------HHhccCCCccEEEecCCC
Confidence 5553 2333443334555555555555554443322 224444555555554443
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=3.9e-15 Score=139.19 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=122.6
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhc-cCCCccEEEccCCCCCCCC-hhhhcccCCcEEEccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFE-GTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDW 205 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 205 (421)
+.+++.++.+..+|... .+.++.|++++|.+ ..++...|. ++++|++|++++|.+..++ ..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777777777543 24578888888875 455555555 7888888888888887765 4577888888888888
Q ss_pred ccCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCCcccchhhh---cCCCCCcEEEcccCCCC
Q 038338 206 CQLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSLQVIAPNVI---SKLSRLEELYMDNSFSG 279 (421)
Q Consensus 206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~ 279 (421)
|.+.. +..+..+++|++|++++|++..+ |..+..+++|++|++++| .+..+|...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 88777 44677888888888888888866 455778888888888885 4556666544 56788888888888777
Q ss_pred CccccCCCCcChhhhcCCCC--CCEEEEEecCc
Q 038338 280 WEKVEGGSNASLVELKRLTK--LTTLEIEVRDA 310 (421)
Q Consensus 280 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 310 (421)
..+. ..+..++. ++.|++.+|.+
T Consensus 177 ~l~~--------~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPL--------TDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCH--------HHHHHSCHHHHTTEECCSSCE
T ss_pred ccCH--------HHhhhccHhhcceEEecCCCc
Confidence 6544 45666665 36777777765
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=4.9e-15 Score=128.33 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=100.8
Q ss_pred cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEee
Q 038338 150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLA 226 (421)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~ 226 (421)
+.++..++.+ ..+|..+ .++|++|++++|.++.++. .+..+.+|++|++++|.+.. |..+.++++|++|+++
T Consensus 14 ~~v~c~~~~l--~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGL--TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCC--SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCc--CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 4566666553 5556543 3677778888777777554 56777778888887777776 5677777778888888
Q ss_pred CCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338 227 DSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI 305 (421)
Q Consensus 227 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 305 (421)
+|+++.+|.. +..+++|++|++++|. +..++...+..+++|++|++++|.+..... ..+..+++|+.|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK--------GTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH--------HHHhCCCCCCEEEe
Confidence 7777777765 4667777777777753 444444446777777777777777665544 44666777777777
Q ss_pred EecCc
Q 038338 306 EVRDA 310 (421)
Q Consensus 306 ~~~~~ 310 (421)
++|.+
T Consensus 160 ~~N~~ 164 (220)
T 2v9t_B 160 AQNPF 164 (220)
T ss_dssp CSSCE
T ss_pred CCCCc
Confidence 77765
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=7.6e-15 Score=127.12 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=112.7
Q ss_pred cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC--hhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338 150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP--SSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNL 225 (421)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 225 (421)
+.++++++.+ ..+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++. +..+.++++|++|++
T Consensus 14 ~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 5788888775 5566644 456788888888888763 237888888888888888887 457888888888888
Q ss_pred eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338 226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304 (421)
Q Consensus 226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 304 (421)
++|.+..++.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+....+ ..+..+++|+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAP--------GAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCT--------TTTTTCTTCCEEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECH--------HHhcCCCCCCEEE
Confidence 88888877665 7788888888888864 444444447888888888888888776654 5677788888888
Q ss_pred EEecCcc
Q 038338 305 IEVRDAE 311 (421)
Q Consensus 305 l~~~~~~ 311 (421)
+++|.+.
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 8888764
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=136.02 Aligned_cols=155 Identities=22% Similarity=0.277 Sum_probs=108.1
Q ss_pred cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hh-cccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338 150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LG-RLINLQTLCLDWCQLED--VAAIGQLKKLEILNL 225 (421)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~-~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 225 (421)
++++++++.+ ..+|..+ ...+++|++++|.++.++.. +. .+.+|++|++++|.+.. +..+.++++|++|++
T Consensus 21 ~~l~c~~~~l--~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQL--PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCC--SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCc--CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 5677777764 5566543 35678888888888776544 44 78888888888888877 456888888888888
Q ss_pred eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338 226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304 (421)
Q Consensus 226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 304 (421)
++|++..++.. +..+++|++|++++|. +..+++..+..+++|+.|++++|.+...+.. .+..+..+++|+.|+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-----~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVE-----LIKDGNKLPKLMLLD 169 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGG-----GTC----CTTCCEEE
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHH-----HhcCcccCCcCCEEE
Confidence 88888877653 6778888888888854 4445444477888888888888877765431 111125677888888
Q ss_pred EEecCccccCC
Q 038338 305 IEVRDAEILLP 315 (421)
Q Consensus 305 l~~~~~~~~~~ 315 (421)
+++|.+..+|.
T Consensus 170 L~~N~l~~l~~ 180 (361)
T 2xot_A 170 LSSNKLKKLPL 180 (361)
T ss_dssp CCSSCCCCCCH
T ss_pred CCCCCCCccCH
Confidence 88887776664
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.9e-14 Score=125.45 Aligned_cols=148 Identities=21% Similarity=0.225 Sum_probs=108.7
Q ss_pred ccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEe
Q 038338 149 LQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNL 225 (421)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l 225 (421)
.+.++.+++.. ..+|..+ .++|++|++++|.+..+ |..+..+.+|++|++++|.+.. + ..+..+++|++|++
T Consensus 21 ~~~v~c~~~~l--~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRH--ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCc--CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 45666666653 5666543 47788888888888775 5567788888888888888877 4 45678888888888
Q ss_pred eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEE
Q 038338 226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLE 304 (421)
Q Consensus 226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 304 (421)
++|+++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+...+. ..+..+++|+.|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPH--------GAFDRLSSLTHAY 165 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred CCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCH--------HHHhCCCCCCEEE
Confidence 88888877665 567888888888885 44577765 6788888888888887765543 4567777888888
Q ss_pred EEecCcc
Q 038338 305 IEVRDAE 311 (421)
Q Consensus 305 l~~~~~~ 311 (421)
+.+|.+.
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 8777764
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=2.1e-14 Score=118.89 Aligned_cols=139 Identities=23% Similarity=0.196 Sum_probs=92.2
Q ss_pred CCCccEEEccCCCCC--CCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcc-cchhhcCCCCCCEEec
Q 038338 172 TEELKVLSLIGIHFS--SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQ-LPLEIGQLTGLRLLDL 248 (421)
Q Consensus 172 l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l 248 (421)
.++|++|++++|.+. .+|..+..+++|++|++++|.++....+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 466777777777776 5676667777777777777776666666777777777777777775 5655666777777777
Q ss_pred cCCcCCcccch-hhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccCCc
Q 038338 249 TNCWSLQVIAP-NVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPD 316 (421)
Q Consensus 249 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 316 (421)
++| .+..++. ..+..+++|++|++++|.+...+. .....+..+++|+.|+++.|...++|..
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 775 3344431 236677777777777776554321 0012466777777777777777666653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=4.4e-17 Score=160.69 Aligned_cols=168 Identities=17% Similarity=0.150 Sum_probs=85.0
Q ss_pred CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCC-------------CC-CCChhhhcccCCcEEE-cccccCC
Q 038338 145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIH-------------FS-SLPSSLGRLINLQTLC-LDWCQLE 209 (421)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~-~lp~~i~~l~~L~~L~-l~~~~~~ 209 (421)
.+++|+.|++++|.+ ..+|..+ +.+++|+.|+++++. .. ..|..++.+.+|+.|+ ++.+.+.
T Consensus 347 ~~~~L~~L~Ls~n~L--~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKS--TVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp TTTTSSSCCCCHHHH--HHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cCccceeccCChhhH--HhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 456666677766663 4555554 556666666665542 11 1344455555555555 3333222
Q ss_pred C-c------ccccCc--CCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 210 D-V------AAIGQL--KKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 210 ~-~------~~~~~l--~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
. + ..+..+ ..|+.|++++|+++.+|. ++.+++|++|++++|. +..+|.. ++.+++|+.|++++|.++.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPA-LAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchh-hhcCCCCCEEECCCCCCCC
Confidence 1 1 011111 235555555555555554 5555555555555542 3345543 4555555555555555443
Q ss_pred ccccCCCCcChhhhcCCCCCCEEEEEecCcccc--CCcc-cccCCceEEEE
Q 038338 281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEIL--LPDF-VSVELQRYRIR 328 (421)
Q Consensus 281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~ 328 (421)
. ..++.+++|+.|++++|.+..+ |..+ .+++|+.|+++
T Consensus 501 l----------p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 501 V----------DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp C----------GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred C----------cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 2 1355555555555555555544 4443 33555555554
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2.2e-15 Score=153.15 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=100.5
Q ss_pred cCCCeEEEcCCCCCccCCccc-CCCCccEEEee-----ecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccC
Q 038338 124 RKDPIAISLPQRNIQELPERL-QCPNLQLFLLF-----RQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLIN 197 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 197 (421)
.+.++++++.++.+...+... ....|+.+.+. .+.. .++...+..++.|++|+|++|.+..+|..+..+.+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM---VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce---ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 356788888877775544322 33333333332 2322 24445568899999999999999999988889999
Q ss_pred CcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338 198 LQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276 (421)
Q Consensus 198 L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (421)
|++|++++|.++. |..++++++|++|+|++|.++.+|..++.+++|++|++++| .++.+|.. ++.+++|++|++++|
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTS
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCC
Confidence 9999999999988 88899999999999999999999999999999999999996 55688877 899999999999999
Q ss_pred CCCCccc
Q 038338 277 FSGWEKV 283 (421)
Q Consensus 277 ~~~~~~~ 283 (421)
.+...++
T Consensus 327 ~l~~~~p 333 (727)
T 4b8c_D 327 PLEKQFL 333 (727)
T ss_dssp CCCSHHH
T ss_pred ccCCCCh
Confidence 8876654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=9.2e-17 Score=158.40 Aligned_cols=196 Identities=17% Similarity=0.100 Sum_probs=117.2
Q ss_pred ccCCCccEEEccCCCCCCCChhhhcccCCcEEEccccc-------------CCC--cccccCcCCCCEEE-eeCCCCccc
Q 038338 170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQ-------------LED--VAAIGQLKKLEILN-LADSNIEQL 233 (421)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-------------~~~--~~~~~~l~~L~~L~-l~~~~l~~l 233 (421)
...++|+.|++++|.++.+|..++.+.+|+.|++++|. ... |..++++++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45788889999999888899999999999999886653 222 56667777777776 444433322
Q ss_pred ch------hhcC--CCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338 234 PL------EIGQ--LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI 305 (421)
Q Consensus 234 p~------~~~~--l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 305 (421)
+. .+.. ...|+.|++++| .+..+|. ++.+++|+.|++++|.+...+ ..++.+++|+.|++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~L 493 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEEC
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccc---------hhhhcCCCCCEEEC
Confidence 21 1111 124777777775 4445654 667777777777777666322 45667777777777
Q ss_pred EecCccccCCcccccCCceEEEEEcCCccchh-hhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEE
Q 038338 306 EVRDAEILLPDFVSVELQRYRIRIGDKLEYEI-DQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLW 378 (421)
Q Consensus 306 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 378 (421)
++|.++.+|....+++|+.|+++. +.+.... |..++.+++|+.|++++|.+....+....+...+|+|+.|+
T Consensus 494 s~N~l~~lp~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 494 SDNALENVDGVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCCCGGGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777776666222446666666653 2333222 55566666666666666654332222222222235555553
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=4.4e-14 Score=116.92 Aligned_cols=124 Identities=21% Similarity=0.205 Sum_probs=65.3
Q ss_pred cCCCeEEEcCCCCCc--cCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCc
Q 038338 124 RKDPIAISLPQRNIQ--ELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQ 199 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~ 199 (421)
.+++++|++++|.+. .+|... .+++|+.|++++|.+ ..+ ..+..+++|++|++++|.+.. +|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC--CCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC--CCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 355666666666654 555442 555555555555554 222 223455555555555555555 444444455555
Q ss_pred EEEcccccCCC-c--ccccCcCCCCEEEeeCCCCcccch----hhcCCCCCCEEeccCC
Q 038338 200 TLCLDWCQLED-V--AAIGQLKKLEILNLADSNIEQLPL----EIGQLTGLRLLDLTNC 251 (421)
Q Consensus 200 ~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~ 251 (421)
+|++++|.+.. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 55555555554 3 455555555555555555554443 3445555555555543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=7.8e-14 Score=112.91 Aligned_cols=122 Identities=21% Similarity=0.220 Sum_probs=80.3
Q ss_pred cCCCeEEEcCCCCCc--cCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCC-CChhhhcccCCc
Q 038338 124 RKDPIAISLPQRNIQ--ELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSS-LPSSLGRLINLQ 199 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~ 199 (421)
.+++++|+++++.+. .+|... .+++|+.|++++|.+ ..+ ..+..+++|++|++++|.+.. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 356777777777775 566543 667777777777765 223 224667777777777777766 566566677777
Q ss_pred EEEcccccCCC-c--ccccCcCCCCEEEeeCCCCcccch----hhcCCCCCCEEecc
Q 038338 200 TLCLDWCQLED-V--AAIGQLKKLEILNLADSNIEQLPL----EIGQLTGLRLLDLT 249 (421)
Q Consensus 200 ~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~ 249 (421)
+|++++|.++. + ..++.+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777666 3 666677777777777776666554 45666666666654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=6.3e-14 Score=113.46 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=48.4
Q ss_pred CCccEEEccCCCCC--CCChhhhcccCCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcc-cchhhcCCCCCCEEecc
Q 038338 173 EELKVLSLIGIHFS--SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQ-LPLEIGQLTGLRLLDLT 249 (421)
Q Consensus 173 ~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~ 249 (421)
++|+.|++++|.+. .+|..++.+++|++|++++|.++....++++++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 44445555555444 3444444455555555555544444444445555555555555443 44444445555555555
Q ss_pred CCcCCcccc-hhhhcCCCCCcEEEcccCCC
Q 038338 250 NCWSLQVIA-PNVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 250 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 278 (421)
+|. +..++ ...++.+++|++|++++|.+
T Consensus 97 ~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 97 GNK-IKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp TSC-CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCc-CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 532 22221 01244455555555555443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.2e-13 Score=115.12 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=75.6
Q ss_pred CccCCCeEEEcCCCCCccCCcccCCC-CccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhh-hcccCCc
Q 038338 122 TIRKDPIAISLPQRNIQELPERLQCP-NLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSL-GRLINLQ 199 (421)
Q Consensus 122 ~~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~ 199 (421)
..+.+++.|++++|.+..++....+. +|+.|++++|.+ ..++ .+..+++|++|++++|.++.+|+.+ +.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Cccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34556677777777666565544333 666666666664 2231 2355666666666666666655443 5666666
Q ss_pred EEEcccccCCC-cc--cccCcCCCCEEEeeCCCCcccchh----hcCCCCCCEEeccCC
Q 038338 200 TLCLDWCQLED-VA--AIGQLKKLEILNLADSNIEQLPLE----IGQLTGLRLLDLTNC 251 (421)
Q Consensus 200 ~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~ 251 (421)
+|++++|.+.. |. .+..+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 66666666655 43 566666666666666666665553 556666666666554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=2.9e-13 Score=114.50 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=59.1
Q ss_pred cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh--hhcccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338 150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS--LGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNL 225 (421)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 225 (421)
++++++++.+ ..+|..+ ..+|++|++++|.+..++.. ++.+++|++|++++|.++. |..+.++++|++|++
T Consensus 11 ~~l~~s~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCc--CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 4455555443 3444432 12555555555555554432 4555555555555555544 344555555555555
Q ss_pred eCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCC
Q 038338 226 ADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 226 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 278 (421)
++|+++.++.. +..+++|++|++++|...+..|. .+..+++|++|++++|.+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCc
Confidence 55555544332 44555555555555432222222 244555555555555443
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2.3e-13 Score=113.45 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=46.5
Q ss_pred CCCccEEEccCCCCCCCChhhhccc-CCcEEEcccccCCCcccccCcCCCCEEEeeCCCCcccchhh-cCCCCCCEEecc
Q 038338 172 TEELKVLSLIGIHFSSLPSSLGRLI-NLQTLCLDWCQLEDVAAIGQLKKLEILNLADSNIEQLPLEI-GQLTGLRLLDLT 249 (421)
Q Consensus 172 l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~ 249 (421)
+.+|++|++++|.++.+|. +..+. +|++|++++|.++....++.+++|++|++++|.++.+|+.+ ..+++|++|+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 4444444444444444432 22222 44455544444444334444445555555555444444332 444555555554
Q ss_pred CCcCCcccch-hhhcCCCCCcEEEcccCCC
Q 038338 250 NCWSLQVIAP-NVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 250 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 278 (421)
+| .++.+|. ..++.+++|+.|++++|.+
T Consensus 97 ~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 97 NN-SLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp SC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 43 2233332 1134444455555544443
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=4.1e-14 Score=143.78 Aligned_cols=133 Identities=22% Similarity=0.236 Sum_probs=109.6
Q ss_pred CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEE
Q 038338 145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEIL 223 (421)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L 223 (421)
.++.|+.|++++|.+ ..++..++ ++++|++|+|++|.++.+|..++.+.+|++|++++|.++. |..++++++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 789999999999986 57887774 7999999999999999999999999999999999999999 9999999999999
Q ss_pred EeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCC-CCcEEEcccCCCCCc
Q 038338 224 NLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLS-RLEELYMDNSFSGWE 281 (421)
Q Consensus 224 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 281 (421)
+|++|.++.+|.+++.+++|++|++++|...+..|.. +..+. .+..+++++|.+...
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCc
Confidence 9999999999999999999999999998665555543 33321 112245555555433
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=7e-13 Score=112.16 Aligned_cols=103 Identities=22% Similarity=0.336 Sum_probs=49.6
Q ss_pred CccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccC
Q 038338 174 ELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTN 250 (421)
Q Consensus 174 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~ 250 (421)
+|++|++++|.++.+|..+..+.+|++|++++|.++. +..+.++++|++|++++|.++.++. .+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 4455555555554444445555555555555555444 2344555555555555555554433 244455555555555
Q ss_pred CcCCcccchhhhcCCCCCcEEEcccCC
Q 038338 251 CWSLQVIAPNVISKLSRLEELYMDNSF 277 (421)
Q Consensus 251 ~~~~~~~~~~~l~~l~~L~~L~l~~~~ 277 (421)
| .+..++...+..+++|+.|++++|.
T Consensus 112 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 112 N-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CCCeeChhhhhcCccccEEEeCCCC
Confidence 3 2333443334445555555555443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=7.5e-13 Score=111.98 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=102.5
Q ss_pred cEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccch-hhcCCCCCCEEeccCCcC
Q 038338 176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPL-EIGQLTGLRLLDLTNCWS 253 (421)
Q Consensus 176 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 253 (421)
++++++++.++.+|..+. .+|++|++++|.++. |..+.++++|++|++++|.++.++. .+..+++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 678899998888887654 589999999999888 8889999999999999999997765 4888999999999996 4
Q ss_pred CcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCcc
Q 038338 254 LQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAE 311 (421)
Q Consensus 254 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 311 (421)
+..++...+..+++|+.|++++|.+...+. ..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE--------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT--------TTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh--------hhhhcCccccEEEeCCCCee
Confidence 556666558889999999999988876554 45777888888888888753
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=5.2e-13 Score=112.91 Aligned_cols=124 Identities=22% Similarity=0.270 Sum_probs=85.8
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccCh-HHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISD-LFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW 205 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 205 (421)
+.++++++.+..+|.... ++++.|++++|.+ ..++. .+|..+++|++|++++|.++.+ |..+..+.+|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 567777777777765432 3777777777765 33333 3356777777777777777764 56677777777777777
Q ss_pred ccCCC--cccccCcCCCCEEEeeCCCCccc-chhhcCCCCCCEEeccCCcCC
Q 038338 206 CQLED--VAAIGQLKKLEILNLADSNIEQL-PLEIGQLTGLRLLDLTNCWSL 254 (421)
Q Consensus 206 ~~~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~ 254 (421)
|.++. +..+.++++|++|++++|+++.+ |..+..+++|++|++++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77776 44577777777777777777754 555777777777777776443
No 131
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.37 E-value=5.3e-14 Score=138.63 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=74.5
Q ss_pred hhhhhHHHhhhhccCchHHHHHHH-----------HhccCCCCCccChHHHHHHHhhh--ccccccccHHHHHHHHHHHH
Q 038338 3 KNVYLSIKLSYDFLRSEEAKSMFR-----------LCGLYSEGHAIPVPYLLRYGVGW--GLFENVYTLEEARSRVHRLI 69 (421)
Q Consensus 3 ~~i~~~l~lSY~~L~~~~lk~cfl-----------~~~~fp~~~~~~~~~li~~wia~--g~~~~~~~~~~~~~~~~~~~ 69 (421)
.++.+++++||++||+ ++|.||+ |||+||+|+.++ +..|+|+ ||++........++.+. ++
T Consensus 361 ~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 361 VGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp STTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 4678899999999998 5999999 999999999998 8999999 99975321111233334 89
Q ss_pred HHHHhcccccccC--CCCceeccchHHHHHHHHhhcC
Q 038338 70 DNLKSSCLLLDGD--AEDEVKMHDIIHVVAVSVAAET 104 (421)
Q Consensus 70 ~~L~~~~~~~~~~--~~~~~~~hd~~~~l~~~~~~~e 104 (421)
++|+++++++..+ ....|+|||+++++|.+++..+
T Consensus 435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 9999999998653 3457999999999999988776
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=5.7e-12 Score=105.00 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=62.4
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWC 206 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 206 (421)
+.+++.++.+..+|.. -.++++.|++++|.+ ..++...+..+++|++|++++|.++.+|.. ++.+.+|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3455555555555432 224555666655553 334443345555555555555555554433 355555555555555
Q ss_pred cCCC-c-ccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCC
Q 038338 207 QLED-V-AAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNC 251 (421)
Q Consensus 207 ~~~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 251 (421)
.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 5555 2 2345555555555555555555444 244555555555554
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=6.2e-12 Score=104.79 Aligned_cols=124 Identities=22% Similarity=0.354 Sum_probs=67.8
Q ss_pred cEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccccCCC-c-ccccCcCCCCEEEee
Q 038338 150 QLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWCQLED-V-AAIGQLKKLEILNLA 226 (421)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~ 226 (421)
+.++++++.. ..+|..+ .++|++|++++|.++.+|.. ++.+.+|++|++++|.++. + ..++++++|++|+++
T Consensus 10 ~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4555555543 3444332 35566666666666554432 4556666666666666555 3 334566666666666
Q ss_pred CCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338 227 DSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG 279 (421)
Q Consensus 227 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 279 (421)
+|+++.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 6666655543 455666666666654 334444443455556666666555443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=1.8e-14 Score=122.71 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=53.2
Q ss_pred ccCCCccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEec
Q 038338 170 EGTEELKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDL 248 (421)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 248 (421)
..+++|++|++++|.+..+| .+..+++|++|++++|.+.. |..+..+++|++|++++|++..+| .+..+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 44555555555555555554 45555555555555555554 444444455555555555555544 3555555555555
Q ss_pred cCCcCCcccch-hhhcCCCCCcEEEcccCCC
Q 038338 249 TNCWSLQVIAP-NVISKLSRLEELYMDNSFS 278 (421)
Q Consensus 249 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 278 (421)
++|. +..++. ..+..+++|++|++++|.+
T Consensus 123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 5532 222222 1244555555555555543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=2e-13 Score=116.23 Aligned_cols=143 Identities=20% Similarity=0.237 Sum_probs=111.3
Q ss_pred CCeEEEcCCC--CCccCCccc-CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChhhhcccCCcEEE
Q 038338 126 DPIAISLPQR--NIQELPERL-QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSSLGRLINLQTLC 202 (421)
Q Consensus 126 ~l~~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 202 (421)
+++...+.+. .+..++... .+++|+.|++++|.+ ..++ . +.++++|++|++++|.++.+|..+..+++|++|+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l--~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE--SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC--cccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 3444455433 334444333 889999999999986 4466 3 5789999999999999999998888889999999
Q ss_pred cccccCCCcccccCcCCCCEEEeeCCCCcccch--hhcCCCCCCEEeccCCcCCcccc---------hhhhcCCCCCcEE
Q 038338 203 LDWCQLEDVAAIGQLKKLEILNLADSNIEQLPL--EIGQLTGLRLLDLTNCWSLQVIA---------PNVISKLSRLEEL 271 (421)
Q Consensus 203 l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~l~~L~~L 271 (421)
+++|.+...+.++.+++|++|++++|.+..++. .+..+++|++|++++|......| ...+..+++|+.|
T Consensus 100 L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 999999884478899999999999999997765 68899999999999975433322 1236778888888
Q ss_pred E
Q 038338 272 Y 272 (421)
Q Consensus 272 ~ 272 (421)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=4.6e-11 Score=99.06 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=56.4
Q ss_pred cEEEccCCCCCCCChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCc
Q 038338 176 KVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCW 252 (421)
Q Consensus 176 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 252 (421)
+.++++++.++.+|..+. .+|++|++++|.+.. |..++++++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 455566665555555443 556666666666555 34555666666666666666655554 355666666666553
Q ss_pred CCcccchhhhcCCCCCcEEEcccCCCC
Q 038338 253 SLQVIAPNVISKLSRLEELYMDNSFSG 279 (421)
Q Consensus 253 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 279 (421)
.+..++...+..+++|+.|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 334444443555556666666555444
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=5.2e-11 Score=98.37 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=63.6
Q ss_pred ccEEEccCCCCCCCChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCC
Q 038338 175 LKVLSLIGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNC 251 (421)
Q Consensus 175 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 251 (421)
.++++++++.++.+|..+. .+|++|++++|.++. +..+.++++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3566666666666665442 566666666666665 45566666666666666666666554 356666666666664
Q ss_pred cCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 252 WSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 252 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
.+..++...+..+++|++|++++|.+..
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 3445555445666666666666665443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=2.9e-11 Score=111.34 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC-EEEEEecCccccCCcc-
Q 038338 240 LTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT-TLEIEVRDAEILLPDF- 317 (421)
Q Consensus 240 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~- 317 (421)
+++|+.+++++| .+..++...|..+++|+++++..| +..... ..+.++++|+ .+.+.. .+..++...
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~--------~aF~~~~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ--------RVFSNCGRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehH--------HHhhCChhccEEEEEcc-cceEEchhhh
Confidence 678888888774 466777766778888888888776 444333 5577778888 888766 566665443
Q ss_pred -cccCCceEEEEEcCCccchhhhhhchhhhceeEE
Q 038338 318 -VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMM 351 (421)
Q Consensus 318 -~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 351 (421)
.+++|+.+++. .+......+..+.+|++|+.+.
T Consensus 294 ~~c~~L~~l~l~-~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLAT-GDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEEC-SSCCCEECTTTTCTTCCCCEEE
T ss_pred hCCccCCEEEeC-CCccCccchhhhcCCcchhhhc
Confidence 45778888774 2333333345677788888775
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=1.2e-10 Score=96.58 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=44.8
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWC 206 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 206 (421)
+.++++++.+..+|.... ++|+.|++++|.+ ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 345555555544443222 4444555554443 222222234444444444444444444433 244444444444444
Q ss_pred cCCC-cc-cccCcCCCCEEEeeCCCCc
Q 038338 207 QLED-VA-AIGQLKKLEILNLADSNIE 231 (421)
Q Consensus 207 ~~~~-~~-~~~~l~~L~~L~l~~~~l~ 231 (421)
.+.. |. .+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 4444 22 2444444444444444444
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.2e-10 Score=107.18 Aligned_cols=199 Identities=10% Similarity=0.068 Sum_probs=119.8
Q ss_pred cChHHhcc--------CCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCC---
Q 038338 164 ISDLFFEG--------TEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSN--- 229 (421)
Q Consensus 164 ~~~~~~~~--------l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~--- 229 (421)
++...|.+ +++|+.|+++. .++.++. .+..+.+|+.+++..+.+.. +..+..+.++..+......
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 44455566 77777777776 5665543 36667777777777766555 4555555555554443311
Q ss_pred -Ccccc-hhhcCCCCC--------------------------CEEeccCCcCCcccchhhh-cCCCCCcEEEcccCCCCC
Q 038338 230 -IEQLP-LEIGQLTGL--------------------------RLLDLTNCWSLQVIAPNVI-SKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 230 -l~~lp-~~~~~l~~L--------------------------~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 280 (421)
...+. ..+..+.+| ..+.+.+. +.......+ ..+++|+.+++.+|.+..
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcce
Confidence 01110 012222233 33333221 001000011 138899999999988877
Q ss_pred ccccCCCCcChhhhcCCCCCCEEEEEecCccccCCcc--cccCCc-eEEEEEcCCccchhhhhhchhhhceeEEEcCCcc
Q 038338 281 EKVEGGSNASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQ-RYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEK 357 (421)
Q Consensus 281 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 357 (421)
.+. ..+.++.+|+.+.+..+ +..++... .+++|+ .+.+. +......+..+.+|++|+.+++.+|.+
T Consensus 241 I~~--------~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~--~~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 241 IPD--------FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP--ASVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECT--------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC--TTCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ecH--------hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc--ccceEEchhhhhCCccCCEEEeCCCcc
Confidence 765 67899999999999886 77777654 558899 99985 344444457789999999999988663
Q ss_pred cccccchhHHHHhhhcccEEEe
Q 038338 358 VSILQENDGTKMLLQRTEDLWL 379 (421)
Q Consensus 358 ~~~~~~~~~~~~~~~~L~~L~l 379 (421)
... ....+.++ ++|+.++.
T Consensus 310 ~~I--~~~aF~~~-~~L~~ly~ 328 (329)
T 3sb4_A 310 TTL--GDELFGNG-VPSKLIYK 328 (329)
T ss_dssp CEE--CTTTTCTT-CCCCEEEC
T ss_pred Ccc--chhhhcCC-cchhhhcc
Confidence 221 23345665 88888763
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=4.4e-10 Score=92.73 Aligned_cols=101 Identities=20% Similarity=0.334 Sum_probs=45.1
Q ss_pred eEEEcCCCCCccCCcccCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCChh-hhcccCCcEEEcccc
Q 038338 128 IAISLPQRNIQELPERLQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPSS-LGRLINLQTLCLDWC 206 (421)
Q Consensus 128 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 206 (421)
+.++++++.+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34555555555454332 24445555555443 223222234444455555554444444332 244444444444444
Q ss_pred cCCC-c-ccccCcCCCCEEEeeCCCCc
Q 038338 207 QLED-V-AAIGQLKKLEILNLADSNIE 231 (421)
Q Consensus 207 ~~~~-~-~~~~~l~~L~~L~l~~~~l~ 231 (421)
.++. + ..+.++++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4444 2 22444444444444444433
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.10 E-value=1.1e-09 Score=103.19 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=154.1
Q ss_pred CCCeEEEcCCCCCccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEE
Q 038338 125 KDPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTL 201 (421)
Q Consensus 125 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L 201 (421)
..++.+.+.++ +..++... + .+|+.+.+..+ ...+....|.+ .+|+.+.+.. .++.++ ..+..+.+|+.+
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~-~~L~~i~l~~~---i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRN-SQIAKVVLNEG---LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTT-CCCSEEECCTT---CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cCEehHhhccc-CCccEEEeCCC---ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 55666666543 33343222 3 36788877655 35566655666 3688888875 455543 457778888888
Q ss_pred EcccccCCC-cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCC
Q 038338 202 CLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSG 279 (421)
Q Consensus 202 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 279 (421)
++..+.++. +...-...+|+.+.+.. .+..++.. +.++++|+.+.+..+ +..++...+.. .+|+.+.+..+ +.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred ecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc
Confidence 888877776 43333357888888874 36666543 667888888888763 45666655655 67888887433 33
Q ss_pred CccccCCCCcChhhhcCCCCCCEEEEEecCcc-----ccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEE
Q 038338 280 WEKVEGGSNASLVELKRLTKLTTLEIEVRDAE-----ILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMML 352 (421)
Q Consensus 280 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 352 (421)
.... ..+.++++|+.+.+..+... .++... .+++|+.+.+. +.........+.+|++|+.+.+
T Consensus 261 ~I~~--------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 261 NIAS--------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EECT--------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEE
T ss_pred EECh--------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEE
Confidence 3322 55777888888888776543 344332 45778877774 3333333455777888888888
Q ss_pred cCCcccccccc-hhHHHHhhhcccEEEeccccCcccccccccccCCCC-CccEEEEee
Q 038338 353 KGLEKVSILQE-NDGTKMLLQRTEDLWLVKLEGVQNVVHELDDGEGFP-RLKHLHVES 408 (421)
Q Consensus 353 ~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~i~~ 408 (421)
..+- ..+ ...+.++ +|+.+.+.++.........+. +++ +++.|++-.
T Consensus 331 p~~l----~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~---~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 331 PANV----TQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWY---GFPDDITVIRVPA 379 (401)
T ss_dssp CTTC----CEECTTSSSSS--CCCEEEECCSSCCBCCCSSCC---CSCTTCCEEEECG
T ss_pred Cccc----cEEcHHhCCCC--CCCEEEEcCCCCccccccccc---CCCCCccEEEeCH
Confidence 6632 122 2234443 788888877654333333333 553 667777654
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=4e-09 Score=99.37 Aligned_cols=234 Identities=13% Similarity=0.069 Sum_probs=168.4
Q ss_pred CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCCCh-hhhcccCCcEEEcccccCCC--cccccCcCCCC
Q 038338 145 QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSLPS-SLGRLINLQTLCLDWCQLED--VAAIGQLKKLE 221 (421)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~ 221 (421)
.+..++.+.+... ...++...|.++ +|+.+.+..+ ++.++. .+.. .+|+.+.+.. .++. ...+.++.+|+
T Consensus 111 ~~~~l~~i~ip~~---i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS---VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT---CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc---cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 3466667776654 456666667775 7999999876 665544 3555 4799999986 5555 67899999999
Q ss_pred EEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC
Q 038338 222 ILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT 301 (421)
Q Consensus 222 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 301 (421)
.+++.++++..++.......+|+.+.+..+ +..++...+..+++|+.+.+..+ +..... ..+.+ .+|+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--------~aF~~-~~L~ 251 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--------EAFRE-SGIT 251 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECT--------TTTTT-CCCS
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccc--------ccccc-CCcc
Confidence 999999999999887666899999999863 67788777899999999999865 332222 33444 6899
Q ss_pred EEEEEecCccccCCcc--cccCCceEEEEEcCCc----cchhhhhhchhhhceeEEEcCCcccccccc-hhHHHHhhhcc
Q 038338 302 TLEIEVRDAEILLPDF--VSVELQRYRIRIGDKL----EYEIDQLLVKSEALRLMMLKGLEKVSILQE-NDGTKMLLQRT 374 (421)
Q Consensus 302 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L 374 (421)
.+.+ .+.+..++... .+++|+.+.+...... .......+.+|++|+.+.+..+- ..+ ...+.++ ++|
T Consensus 252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i----~~I~~~aF~~c-~~L 325 (401)
T 4fdw_A 252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI----RILGQGLLGGN-RKV 325 (401)
T ss_dssp EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTC----CEECTTTTTTC-CSC
T ss_pred EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCce----EEEhhhhhcCC-CCc
Confidence 9999 55666665553 5699999999633221 11234668899999999998632 222 2345555 899
Q ss_pred cEEEeccccCccccc-ccccccCCCCCccEEEEeec
Q 038338 375 EDLWLVKLEGVQNVV-HELDDGEGFPRLKHLHVESC 409 (421)
Q Consensus 375 ~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~i~~c 409 (421)
+.+.+..+ +..+. ..+. ++ +|+.+.+.++
T Consensus 326 ~~l~lp~~--l~~I~~~aF~---~~-~L~~l~l~~n 355 (401)
T 4fdw_A 326 TQLTIPAN--VTQINFSAFN---NT-GIKEVKVEGT 355 (401)
T ss_dssp CEEEECTT--CCEECTTSSS---SS-CCCEEEECCS
T ss_pred cEEEECcc--ccEEcHHhCC---CC-CCCEEEEcCC
Confidence 99999654 45554 3343 77 9999999876
No 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.02 E-value=3.1e-10 Score=115.49 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=72.6
Q ss_pred hhhhhHHHhhhhccCchHH-HHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccccccc
Q 038338 3 KNVYLSIKLSYDFLRSEEA-KSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDG 81 (421)
Q Consensus 3 ~~i~~~l~lSY~~L~~~~l-k~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 81 (421)
..+..+|.+||+.||++ + |.||+|||+||+++.|+++.++..|+++| . + .+.+++++|+++++++..
T Consensus 353 ~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG--e-----e----dAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--K-----S----DVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC--S-----H----HHHHHHHHHHTSSSSSBC
T ss_pred hHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC--H-----H----HHHHHHHHHHhhCCEEEe
Confidence 56889999999999985 8 99999999999999999999999999987 1 1 244589999999999886
Q ss_pred CCCCceeccchHHHHHH
Q 038338 82 DAEDEVKMHDIIHVVAV 98 (421)
Q Consensus 82 ~~~~~~~~hd~~~~l~~ 98 (421)
+....|+|||++++++.
T Consensus 421 ~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 421 PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSSEEBCCCHHHHHHH
T ss_pred CCCCEEEehHHHHHHhc
Confidence 55667999999998663
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.02 E-value=7.7e-11 Score=110.01 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=54.8
Q ss_pred cCCCeEEEcCCCCCccCC-----ccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-----Chh
Q 038338 124 RKDPIAISLPQRNIQELP-----ERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-----PSS 191 (421)
Q Consensus 124 ~~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-----p~~ 191 (421)
.+.++.+++++|.+.... ... ..++|+.|++++|.+ ...-...+...+++|++|++++|.++.. ...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 345667777766653211 111 224555555555544 2221222223334555555555554321 111
Q ss_pred h-hcccCCcEEEcccccCCC------cccccCcCCCCEEEeeCCCCc-----ccchhhcCCCCCCEEeccCC
Q 038338 192 L-GRLINLQTLCLDWCQLED------VAAIGQLKKLEILNLADSNIE-----QLPLEIGQLTGLRLLDLTNC 251 (421)
Q Consensus 192 i-~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~ 251 (421)
+ ....+|++|++++|.+++ +..+...++|++|++++|.+. .++..+...++|++|++++|
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 1 123445555555555433 122234445555555555444 12233344444555555544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=1.8e-10 Score=107.53 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=116.5
Q ss_pred CCCccEEEeeecCCCCcccCh----HHhccCCCccEEEccCCCCCC--CChhhhcccCCcEEEcccccCCC--cccc---
Q 038338 146 CPNLQLFLLFRQGYGPVQISD----LFFEGTEELKVLSLIGIHFSS--LPSSLGRLINLQTLCLDWCQLED--VAAI--- 214 (421)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~~--- 214 (421)
.+.++.|++++|.+ ...... .+....++|++|++++|.++. ...-...+.+|++|++++|.+.+ ...+
T Consensus 71 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 46799999999986 222111 111123799999999998864 22333456789999999999876 3444
Q ss_pred --cCcCCCCEEEeeCCCCc-----ccchhhcCCCCCCEEeccCCcCCcccc----hhhhcCCCCCcEEEcccCCCCCccc
Q 038338 215 --GQLKKLEILNLADSNIE-----QLPLEIGQLTGLRLLDLTNCWSLQVIA----PNVISKLSRLEELYMDNSFSGWEKV 283 (421)
Q Consensus 215 --~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~ 283 (421)
...++|++|++++|.++ .++..+..+++|++|++++|.. +... ...+...++|++|++++|.++....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l-~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC-HHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC-CcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 35688999999999987 3556678899999999999753 3321 1236778899999999998875432
Q ss_pred cCCCCcChhhhcCCCCCCEEEEEecCccc
Q 038338 284 EGGSNASLVELKRLTKLTTLEIEVRDAEI 312 (421)
Q Consensus 284 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 312 (421)
..+...+...++|++|++++|.++.
T Consensus 229 ----~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 ----LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ----HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ----HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 2334567778999999999999753
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=5.9e-09 Score=96.57 Aligned_cols=99 Identities=23% Similarity=0.164 Sum_probs=72.5
Q ss_pred EEEeeec-CCCCcccChHHhccCCCccEEEccC-CCCCCCC-hhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEe
Q 038338 151 LFLLFRQ-GYGPVQISDLFFEGTEELKVLSLIG-IHFSSLP-SSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNL 225 (421)
Q Consensus 151 ~L~l~~~-~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 225 (421)
.++.+++ .+ ..+|. +..+++|++|+|++ |.++.+| ..++.+.+|++|++++|.++. |..|+++++|++|+|
T Consensus 12 ~v~~~~~n~l--~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGAL--DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCC--TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCC--CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 4566665 43 55776 47778888888885 8887765 457788888888888888877 456788888888888
Q ss_pred eCCCCcccchhhcCCCCCCEEeccCCcC
Q 038338 226 ADSNIEQLPLEIGQLTGLRLLDLTNCWS 253 (421)
Q Consensus 226 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 253 (421)
++|++..+|..+....+|++|++.+|..
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCCc
Confidence 8888888877655444488888887643
No 148
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.84 E-value=3.2e-09 Score=115.01 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=75.1
Q ss_pred hhhhhHHHhhhhccCchHHHHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhcccccccC
Q 038338 3 KNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDGD 82 (421)
Q Consensus 3 ~~i~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 82 (421)
+.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++..|.+++ +.+.+++++|+++++++...
T Consensus 362 ~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 362 EALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp HHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHhccceEEec
Confidence 3588999999999998 5999999999999999999999999997652 33455789999999997653
Q ss_pred C--CCceeccchHHHHHHHHhhcC
Q 038338 83 A--EDEVKMHDIIHVVAVSVAAET 104 (421)
Q Consensus 83 ~--~~~~~~hd~~~~l~~~~~~~e 104 (421)
. ...|+||+++++++...+..+
T Consensus 429 ~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCCceEEEecHHHHHHHHhhhhHH
Confidence 2 335999999999999887654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.7e-08 Score=93.35 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=83.2
Q ss_pred EEEcCCC-CCccCCcccCCCCccEEEeee-cCCCCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEEEccc
Q 038338 129 AISLPQR-NIQELPERLQCPNLQLFLLFR-QGYGPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTLCLDW 205 (421)
Q Consensus 129 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 205 (421)
.++.+++ .+..+|.+..+++|+.|++++ |.+ ..++...|.++++|++|+|++|.++.++ ..+..+.+|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 788888844888999999996 875 6677666789999999999999998865 4679999999999999
Q ss_pred ccCCC-cccccCcCCCCEEEeeCCCCcc
Q 038338 206 CQLED-VAAIGQLKKLEILNLADSNIEQ 232 (421)
Q Consensus 206 ~~~~~-~~~~~~l~~L~~L~l~~~~l~~ 232 (421)
|.+.. |..+.....|+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccC
Confidence 99988 6544443349999999998873
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=2.7e-08 Score=92.07 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=13.3
Q ss_pred ccHHHHHHHHHHHHHHHHhcccc
Q 038338 56 YTLEEARSRVHRLIDNLKSSCLL 78 (421)
Q Consensus 56 ~~~~~~~~~~~~~~~~L~~~~~~ 78 (421)
.+.++|...+.+++.+=..+|..
T Consensus 44 ~~~~~a~~~~~~l~~~k~~kGy~ 66 (362)
T 2ra8_A 44 SSAGEAEKAAGKLIAEKTKKGYV 66 (362)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCc
Confidence 35566776666666654445543
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.55 E-value=9.5e-07 Score=83.13 Aligned_cols=78 Identities=10% Similarity=0.110 Sum_probs=45.4
Q ss_pred cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccc-hhHHHHhhhcccEEEeccccCccccc-cccccc
Q 038338 318 VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE-NDGTKMLLQRTEDLWLVKLEGVQNVV-HELDDG 395 (421)
Q Consensus 318 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 395 (421)
.+.+|+.+.+. +.........+.+|.+|+.+.+..+- ..+ ...+.++ .+|+.+.+..+ ++.++ ..+.
T Consensus 295 ~~~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~~v----~~I~~~aF~~c-~~L~~i~lp~~--l~~I~~~aF~-- 363 (394)
T 4fs7_A 295 GCSSLTEVKLL--DSVKFIGEEAFESCTSLVSIDLPYLV----EEIGKRSFRGC-TSLSNINFPLS--LRKIGANAFQ-- 363 (394)
T ss_dssp TCTTCCEEEEC--TTCCEECTTTTTTCTTCCEECCCTTC----CEECTTTTTTC-TTCCEECCCTT--CCEECTTTBT--
T ss_pred ccccccccccc--cccceechhhhcCCCCCCEEEeCCcc----cEEhHHhccCC-CCCCEEEECcc--ccEehHHHhh--
Confidence 34667777663 22332223457778888888876521 222 2345554 78888887543 44443 2333
Q ss_pred CCCCCccEEEEe
Q 038338 396 EGFPRLKHLHVE 407 (421)
Q Consensus 396 ~~~~~L~~L~i~ 407 (421)
++++|+.+++.
T Consensus 364 -~C~~L~~i~lp 374 (394)
T 4fs7_A 364 -GCINLKKVELP 374 (394)
T ss_dssp -TCTTCCEEEEE
T ss_pred -CCCCCCEEEEC
Confidence 78888888875
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=4.8e-07 Score=83.67 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=87.6
Q ss_pred CCccEEEccCCCCC-C--------CChhhhcccCCcEEEcccccCC----------C-cccccCcCCCCEEEeeCCCCcc
Q 038338 173 EELKVLSLIGIHFS-S--------LPSSLGRLINLQTLCLDWCQLE----------D-VAAIGQLKKLEILNLADSNIEQ 232 (421)
Q Consensus 173 ~~L~~L~l~~~~~~-~--------lp~~i~~l~~L~~L~l~~~~~~----------~-~~~~~~l~~L~~L~l~~~~l~~ 232 (421)
..++.|.+..+... . +..++..+++|+.|.+...... . ...+..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 45677777765443 1 2334567788999988654321 1 2333556778888887763223
Q ss_pred cchhhcCCCCCCEEeccCCcCCcccchhhhc--CCCCCcEEEcccC--CCCCccccCCCCcChhhh--cCCCCCCEEEEE
Q 038338 233 LPLEIGQLTGLRLLDLTNCWSLQVIAPNVIS--KLSRLEELYMDNS--FSGWEKVEGGSNASLVEL--KRLTKLTTLEIE 306 (421)
Q Consensus 233 lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~ 306 (421)
++. + .+++|++|.+..|......... +. .+++|+.|+++.+ ...... +..+....+ ..+++|+.|.+.
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~---~~~~l~~~l~~~~~p~Lr~L~L~ 260 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDG---DMNVFRPLFSKDRFPNLKWLGIV 260 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCS---CGGGTGGGSCTTTCTTCCEEEEE
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHH-HHHccCCCCcEEEEeccccccccch---hHHHHHHHHhcCCCCCcCEEeCC
Confidence 443 3 3677777777765432222111 22 5777777776531 100000 000111111 235667777776
Q ss_pred ecCccc-cCCcc----cccCCceEEEEEcCCccch----hhhhhchhhhceeEEEcCCc
Q 038338 307 VRDAEI-LLPDF----VSVELQRYRIRIGDKLEYE----IDQLLVKSEALRLMMLKGLE 356 (421)
Q Consensus 307 ~~~~~~-~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~ 356 (421)
+|.+.. .+..+ .+++|+.|+++. +.+... ++..+..+++|+.|++++|.
T Consensus 261 ~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 261 DAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 665431 11111 235566666642 222221 22233445566666665544
No 153
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.46 E-value=1.9e-07 Score=92.98 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=71.7
Q ss_pred hhhhhHHHhhhhccCchHHHHHHHHhccCCCCCccChHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccccccc-
Q 038338 3 KNVYLSIKLSYDFLRSEEAKSMFRLCGLYSEGHAIPVPYLLRYGVGWGLFENVYTLEEARSRVHRLIDNLKSSCLLLDG- 81 (421)
Q Consensus 3 ~~i~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~~~~~~li~~wia~g~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~- 81 (421)
..+..++..||+.||+ +.|.||+++|+||+|+.++.+.+...|.+++ + ...+++++|+++++++..
T Consensus 362 ~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 362 EALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp HHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH--------H----HHHHHHHHHHhCcCeEEec
Confidence 3678899999999998 5999999999999999999999999997531 1 235578899999999743
Q ss_pred -CCCCceeccchHHHHHHHHhh
Q 038338 82 -DAEDEVKMHDIIHVVAVSVAA 102 (421)
Q Consensus 82 -~~~~~~~~hd~~~~l~~~~~~ 102 (421)
+....|+||+++++++.....
T Consensus 429 ~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 429 NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ETTEEEEECCHHHHHHHHHHTG
T ss_pred CCCccEEEEcHHHHHHHHhhhh
Confidence 233469999999999988743
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=3.7e-07 Score=74.44 Aligned_cols=90 Identities=10% Similarity=-0.061 Sum_probs=49.7
Q ss_pred cCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHh---hhcccEEEeccccCccccc-cccccc
Q 038338 320 VELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKML---LQRTEDLWLVKLEGVQNVV-HELDDG 395 (421)
Q Consensus 320 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~-~~~~~~ 395 (421)
..|+.|+++++. .+......+..|++|++|++++|.. -.......+..+ .++|++|++++|..+++.. ..+.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~-ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-- 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHY-IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-- 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTT-CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG--
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCc-cCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh--
Confidence 456666666555 3333344456677777777777651 111222223321 2467777777776654432 2222
Q ss_pred CCCCCccEEEEeecCceee
Q 038338 396 EGFPRLKHLHVESCYEIVH 414 (421)
Q Consensus 396 ~~~~~L~~L~i~~c~~L~~ 414 (421)
.+++|+.|++++|+.+..
T Consensus 137 -~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 -HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -GCTTCCEEEEESCTTCCC
T ss_pred -cCCCCCEEECCCCCCCCc
Confidence 567777777777776654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=6.2e-07 Score=73.10 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCccEEEccCCCCCC-CChhhhcccCCcEEEccccc-CCC--cccccCc----CCCCEEEeeCC-CCc-ccchhhcCCCC
Q 038338 173 EELKVLSLIGIHFSS-LPSSLGRLINLQTLCLDWCQ-LED--VAAIGQL----KKLEILNLADS-NIE-QLPLEIGQLTG 242 (421)
Q Consensus 173 ~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~-~~~--~~~~~~l----~~L~~L~l~~~-~l~-~lp~~~~~l~~ 242 (421)
..|+.||+++|.++. -...+..+++|+.|++++|. +++ ...++.+ ++|++|++++| +++ .--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467888888877654 12335677777777777775 555 5556554 36777777776 466 11234556777
Q ss_pred CCEEeccCCcCCcc
Q 038338 243 LRLLDLTNCWSLQV 256 (421)
Q Consensus 243 L~~L~l~~~~~~~~ 256 (421)
|++|++++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777765554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=7.7e-07 Score=74.19 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=40.9
Q ss_pred hccCCCccEEEccCC-CCCC-----CChhhhcccCCcEEEcccccCCC--c----ccccCcCCCCEEEeeCCCCc-----
Q 038338 169 FEGTEELKVLSLIGI-HFSS-----LPSSLGRLINLQTLCLDWCQLED--V----AAIGQLKKLEILNLADSNIE----- 231 (421)
Q Consensus 169 ~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~----- 231 (421)
+...+.|++|++++| .+.. +...+....+|++|++++|.+.+ . ..+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344556666666665 5532 33334445556666666665544 1 22333455666666665554
Q ss_pred ccchhhcCCCCCCEEec
Q 038338 232 QLPLEIGQLTGLRLLDL 248 (421)
Q Consensus 232 ~lp~~~~~l~~L~~L~l 248 (421)
.+...+...++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 23334444555555555
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.19 E-value=1.3e-06 Score=72.73 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=71.5
Q ss_pred CCCCccEEEeeec-CCCCcc---cChHHhccCCCccEEEccCCCCCC-----CChhhhcccCCcEEEcccccCCC-----
Q 038338 145 QCPNLQLFLLFRQ-GYGPVQ---ISDLFFEGTEELKVLSLIGIHFSS-----LPSSLGRLINLQTLCLDWCQLED----- 210 (421)
Q Consensus 145 ~~~~L~~L~l~~~-~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~----- 210 (421)
..+.|+.|++++| .+ ... .....+...++|++|++++|.+.. +...+....+|++|++++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i-~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCC-CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 4566777777766 54 111 112223556788888888888754 44456666788888888888776
Q ss_pred -cccccCcCCCCEEEe--eCCCCc-----ccchhhcCCCCCCEEeccCC
Q 038338 211 -VAAIGQLKKLEILNL--ADSNIE-----QLPLEIGQLTGLRLLDLTNC 251 (421)
Q Consensus 211 -~~~~~~l~~L~~L~l--~~~~l~-----~lp~~~~~l~~L~~L~l~~~ 251 (421)
...+...++|++|++ ++|.+. .+...+...++|++|++++|
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 255666788999999 778776 24445566677888888775
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.08 E-value=2e-05 Score=74.05 Aligned_cols=231 Identities=12% Similarity=0.061 Sum_probs=142.3
Q ss_pred cCCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccccCCCcccccCcCCCCE
Q 038338 144 LQCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEI 222 (421)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 222 (421)
.++++|+.+.+..+ ...+....|..+.+|+.+.+..+ ++.+ ...+..+..|+.+.+..+...-........+|+.
T Consensus 159 ~~c~~L~~i~l~~~---~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 159 ATCESLEYVSLPDS---METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTCTTCCEEECCTT---CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred cccCCCcEEecCCc---cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 37889999988765 34566777788999999988766 4443 3346677788877766544222233334567888
Q ss_pred EEeeCCCCcccc-hhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCC
Q 038338 223 LNLADSNIEQLP-LEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLT 301 (421)
Q Consensus 223 L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 301 (421)
+.+... +..+. ..+..+.+|+.+.+..+ ...+....+..+..++........+. . ..+..+.+|+
T Consensus 235 i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~---~--------~~F~~~~~L~ 300 (394)
T 4fs7_A 235 IIIPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP---E--------KTFYGCSSLT 300 (394)
T ss_dssp EEECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC---T--------TTTTTCTTCC
T ss_pred EEECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec---c--------cccccccccc
Confidence 877653 34333 34667888888888763 23444444677788887776543211 1 3466778888
Q ss_pred EEEEEecCccccCCcc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccchhHHHHhhhcccEEEe
Q 038338 302 TLEIEVRDAEILLPDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQENDGTKMLLQRTEDLWL 379 (421)
Q Consensus 302 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 379 (421)
.+.+.. .+..++... .+.+|+.+.+. +.........+.+|.+|+.+.+..+- ... ....+.++ ++|+.+++
T Consensus 301 ~i~l~~-~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~~l--~~I-~~~aF~~C-~~L~~i~l 373 (394)
T 4fs7_A 301 EVKLLD-SVKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPLSL--RKI-GANAFQGC-INLKKVEL 373 (394)
T ss_dssp EEEECT-TCCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCTTC--CEE-CTTTBTTC-TTCCEEEE
T ss_pred cccccc-ccceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECccc--cEe-hHHHhhCC-CCCCEEEE
Confidence 888753 355554442 45788888773 33333334567889999999887742 111 12345555 88999988
Q ss_pred ccccCcccccccccccCCCCCccEE
Q 038338 380 VKLEGVQNVVHELDDGEGFPRLKHL 404 (421)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~L~~L 404 (421)
... ++.+...+. ++++|+.+
T Consensus 374 p~~--~~~~~~~F~---~c~~L~~I 393 (394)
T 4fs7_A 374 PKR--LEQYRYDFE---DTTKFKWI 393 (394)
T ss_dssp EGG--GGGGGGGBC---TTCEEEEE
T ss_pred CCC--CEEhhheec---CCCCCcEE
Confidence 643 333333333 55555543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.08 E-value=9.8e-05 Score=69.28 Aligned_cols=265 Identities=12% Similarity=0.084 Sum_probs=130.8
Q ss_pred CCeEEEcCCCCCccCCccc--CCCCccEEEeeecCC-CCcccChHHhccCCCccEEEccCCCCCCCC-hhhhcccCCcEE
Q 038338 126 DPIAISLPQRNIQELPERL--QCPNLQLFLLFRQGY-GPVQISDLFFEGTEELKVLSLIGIHFSSLP-SSLGRLINLQTL 201 (421)
Q Consensus 126 ~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L 201 (421)
.++.+.+..+ +..+.... +|.+|+.+.+..+.. ....+....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4777777643 44454333 778888888876531 134555666677777777766544 33333 335667777777
Q ss_pred EcccccCCC-cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCEEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCC
Q 038338 202 CLDWCQLED-VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGW 280 (421)
Q Consensus 202 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 280 (421)
.+..+...- ...+..+.+|+.+.+..+ +..+........+|+.+.+... ...+....+..+.++............
T Consensus 143 ~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 143 TIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred cccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceeccccccccc
Confidence 775433221 455666777777777543 4444433333455666666442 222222234445555544432211110
Q ss_pred cccc-------------------------C--CCC-cChhhhcCCCCCCEEEEEecCccccCCcc--cccCCceEEEEEc
Q 038338 281 EKVE-------------------------G--GSN-ASLVELKRLTKLTTLEIEVRDAEILLPDF--VSVELQRYRIRIG 330 (421)
Q Consensus 281 ~~~~-------------------------~--~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 330 (421)
.... . +.. --...+..+..|+.+.+..+. ..+.... .+++|+.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-- 296 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-- 296 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC--
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC--
Confidence 0000 0 000 001234555666666553222 2222221 33566666652
Q ss_pred CCccchhhhhhchhhhceeEEEcCCcccccccc-hhHHHHhhhcccEEEeccccCccccc-ccccccCCCCCccEEEEee
Q 038338 331 DKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE-NDGTKMLLQRTEDLWLVKLEGVQNVV-HELDDGEGFPRLKHLHVES 408 (421)
Q Consensus 331 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~i~~ 408 (421)
+.........+.+|.+|+.+.+..+- ..+ ...+.++ .+|+.+.|-.. ++.+. ..+. ++++|+.+++.+
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~~v----~~I~~~aF~~C-~~L~~i~ip~s--v~~I~~~aF~---~C~~L~~i~~~~ 366 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPEGI----TQILDDAFAGC-EQLERIAIPSS--VTKIPESAFS---NCTALNNIEYSG 366 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTC----CEECTTTTTTC-TTCCEEEECTT--CCBCCGGGGT---TCTTCCEEEESS
T ss_pred CcccccCceeecCCCCcCEEEeCCcc----cEehHhHhhCC-CCCCEEEECcc--cCEEhHhHhh---CCCCCCEEEECC
Confidence 22222223446667777777776521 112 2234444 67777777432 33333 2233 667777776653
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=9.7e-05 Score=69.31 Aligned_cols=257 Identities=12% Similarity=0.105 Sum_probs=132.0
Q ss_pred ccCccCCCeEEEcCCCC---CccCCccc--CCCCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-Chhhh
Q 038338 120 EETIRKDPIAISLPQRN---IQELPERL--QCPNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLG 193 (421)
Q Consensus 120 ~~~~~~~l~~l~l~~~~---~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~ 193 (421)
.+..+.+++.+.+..+. +..+.... .+.+|+.+.+..+ ...+....|..+.+|+.+.+.... ..+ ...+.
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~ 157 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFS 157 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTT
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---cceehhhhhhhhccccccccccee-eeeccccee
Confidence 45567888888886553 33343222 5667766655443 344555556677777777776432 222 22345
Q ss_pred cccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchhhcCCCCCCE--------------------------
Q 038338 194 RLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLEIGQLTGLRL-------------------------- 245 (421)
Q Consensus 194 ~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~-------------------------- 245 (421)
.+..|+.+.+..+ +.. ...+. ..+|+.+.+..+-..--...+..+.++..
T Consensus 158 ~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T 4gt6_A 158 YCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL 235 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE
T ss_pred cccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccccccc
Confidence 5666666665443 121 12222 23444444433211111111222222222
Q ss_pred -----------EeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEEEecCccccC
Q 038338 246 -----------LDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEIEVRDAEILL 314 (421)
Q Consensus 246 -----------L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 314 (421)
+.+.. .+..+....+..+..|+.+.+..+.. .... ..+.+++.|+.+.+. +.+..++
T Consensus 236 ~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~--------~aF~~c~~L~~i~l~-~~i~~I~ 303 (394)
T 4gt6_A 236 IRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVV-SIGT--------GAFMNCPALQDIEFS-SRITELP 303 (394)
T ss_dssp EECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCC-EECT--------TTTTTCTTCCEEECC-TTCCEEC
T ss_pred cccccccccceEEcCC--cceEcccceeeecccccEEecccccc-eecC--------cccccccccccccCC-CcccccC
Confidence 22221 12223333466777788877754321 1111 456677888888774 4455565
Q ss_pred Ccc--cccCCceEEEEEcCCccchhhhhhchhhhceeEEEcCCcccccccc-hhHHHHhhhcccEEEeccccCccccccc
Q 038338 315 PDF--VSVELQRYRIRIGDKLEYEIDQLLVKSEALRLMMLKGLEKVSILQE-NDGTKMLLQRTEDLWLVKLEGVQNVVHE 391 (421)
Q Consensus 315 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 391 (421)
... .+.+|+.+.+. +.........+.+|.+|+.+.+..+- ..+ ...+.++ ++|+.+++.++.. .+ ..
T Consensus 304 ~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~C~~L~~i~ip~sv----~~I~~~aF~~C-~~L~~i~~~~~~~--~~-~~ 373 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIP--EGITQILDDAFAGCEQLERIAIPSSV----TKIPESAFSNC-TALNNIEYSGSRS--QW-NA 373 (394)
T ss_dssp TTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEEECTTC----CBCCGGGGTTC-TTCCEEEESSCHH--HH-HT
T ss_pred ceeecCCCCcCEEEeC--CcccEehHhHhhCCCCCCEEEECccc----CEEhHhHhhCC-CCCCEEEECCcee--eh-hh
Confidence 543 45788888873 23332334567888999999987632 222 3345565 8899998876542 11 12
Q ss_pred ccccCCCCCccEEEEe
Q 038338 392 LDDGEGFPRLKHLHVE 407 (421)
Q Consensus 392 ~~~~~~~~~L~~L~i~ 407 (421)
+. .+.+|+.+.+.
T Consensus 374 ~~---~~~~L~~i~i~ 386 (394)
T 4gt6_A 374 IS---TDSGLQNLPVA 386 (394)
T ss_dssp CB---CCCCC------
T ss_pred hh---ccCCCCEEEeC
Confidence 22 56677777664
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=1.1e-05 Score=70.69 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=35.6
Q ss_pred ccCCcEEEcccccCCC----cccccCcCCCCEEEeeCCCCcccchhhcCCC--CCCEEeccCCcCCcccc------hhhh
Q 038338 195 LINLQTLCLDWCQLED----VAAIGQLKKLEILNLADSNIEQLPLEIGQLT--GLRLLDLTNCWSLQVIA------PNVI 262 (421)
Q Consensus 195 l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~~~~------~~~l 262 (421)
+++|+.|++++|.+.. +..+..+++|+.|+|++|++..+ ..+..+. +|++|++++|...+..| ...+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 4455555555555444 12233455555555555555443 2233333 55555555544433222 1224
Q ss_pred cCCCCCcEEE
Q 038338 263 SKLSRLEELY 272 (421)
Q Consensus 263 ~~l~~L~~L~ 272 (421)
..+++|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5566666665
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=2.2e-06 Score=75.26 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=39.3
Q ss_pred cCCCccEEEccCCCCCCC---ChhhhcccCCcEEEcccccCCCcccccCcC--CCCEEEeeCCCCc-ccc-------hhh
Q 038338 171 GTEELKVLSLIGIHFSSL---PSSLGRLINLQTLCLDWCQLEDVAAIGQLK--KLEILNLADSNIE-QLP-------LEI 237 (421)
Q Consensus 171 ~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~--~L~~L~l~~~~l~-~lp-------~~~ 237 (421)
++++|+.|+|++|.+..+ |..+..+++|++|++++|.+.+...+..+. +|++|++++|.+. .+| ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 355566666666655442 234445566666666666555533333333 5566666665554 222 123
Q ss_pred cCCCCCCEEe
Q 038338 238 GQLTGLRLLD 247 (421)
Q Consensus 238 ~~l~~L~~L~ 247 (421)
..+++|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4555555554
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.014 Score=53.98 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=23.7
Q ss_pred CCccEEEeeecCCCCcccChHHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc
Q 038338 147 PNLQLFLLFRQGYGPVQISDLFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW 205 (421)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 205 (421)
.+|+.+.+..+. ..+....|... .|..+.+..+ ++.+ ...+..+.++....+..
T Consensus 113 ~~L~~i~lp~~~---~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 113 TDLDDFEFPGAT---TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCCSEEECCTTC---CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred CCcccccCCCcc---ccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence 467777775542 23333334333 4444444433 2221 22234445555554443
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.85 E-value=0.013 Score=54.29 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=61.4
Q ss_pred hccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEcccccCCC--cccccCcCCCCEEEeeCCCCcccchh-hcCCCCCC
Q 038338 169 FEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEILNLADSNIEQLPLE-IGQLTGLR 244 (421)
Q Consensus 169 ~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~ 244 (421)
+....+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++. ...+.++.+|+.+.+.. ++..++.. +..+++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 344556666655443 2222 223445555666655443 222 34455556666666543 24444332 45566666
Q ss_pred EEeccCCcCCcccchhhhcCCCCCcEEEcccCCCCCccccCCCCcChhhhcCCCCCCEEEE
Q 038338 245 LLDLTNCWSLQVIAPNVISKLSRLEELYMDNSFSGWEKVEGGSNASLVELKRLTKLTTLEI 305 (421)
Q Consensus 245 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 305 (421)
.+.+.+ ..+..++...+..+.+|+.+.+..+ +..... ..+.++.+|+.+.+
T Consensus 290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--------~aF~~C~~L~~i~i 340 (379)
T 4h09_A 290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--------YAFKNCKALSTISY 340 (379)
T ss_dssp EEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCCCCC
T ss_pred cccccc-cccceehhhhhcCCCCCCEEEcCcc-ccEEHH--------HHhhCCCCCCEEEE
Confidence 666654 2344455444566666666665432 222211 34555566665555
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.55 E-value=0.0041 Score=51.48 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=41.4
Q ss_pred ccCCCccEEEccCC-CCCC-----CChhhhcccCCcEEEcccccCCC--c----ccccCcCCCCEEEeeCCCCc-----c
Q 038338 170 EGTEELKVLSLIGI-HFSS-----LPSSLGRLINLQTLCLDWCQLED--V----AAIGQLKKLEILNLADSNIE-----Q 232 (421)
Q Consensus 170 ~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~-----~ 232 (421)
..-+.|+.|+|+++ .+.. +...+..-.+|+.|++++|.+.+ . ..+..-+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666654 4432 33334445556666666666554 2 22233355666666666555 2
Q ss_pred cchhhcCCCCCCEEeccC
Q 038338 233 LPLEIGQLTGLRLLDLTN 250 (421)
Q Consensus 233 lp~~~~~l~~L~~L~l~~ 250 (421)
+-..+..-+.|++|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 223333344456665554
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.68 E-value=0.0086 Score=49.56 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=58.6
Q ss_pred hcccCCcEEEcccc-cCCC------cccccCcCCCCEEEeeCCCCc-----ccchhhcCCCCCCEEeccCCcCCcc----
Q 038338 193 GRLINLQTLCLDWC-QLED------VAAIGQLKKLEILNLADSNIE-----QLPLEIGQLTGLRLLDLTNCWSLQV---- 256 (421)
Q Consensus 193 ~~l~~L~~L~l~~~-~~~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~---- 256 (421)
..-..|+.|+++++ .+.+ .+.+..-+.|+.|+|++|.+. .+...+..-+.|++|++++|.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456888888775 5543 144455567777777777766 3333444556677777776533211
Q ss_pred cchhhhcCCCCCcEEEcccCCC---CCccccCCCCcChhhhcCCCCCCEEEEEecC
Q 038338 257 IAPNVISKLSRLEELYMDNSFS---GWEKVEGGSNASLVELKRLTKLTTLEIEVRD 309 (421)
Q Consensus 257 ~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 309 (421)
+.. .+..-+.|++|+++++.. +.. +..++.+.+..-+.|+.|++..+.
T Consensus 118 la~-aL~~N~tL~~L~L~n~~~~~ig~~----g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLR-STLVTQSIVEFKADNQRQSVLGNQ----VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHH-HTTTTCCCSEEECCCCSSCCCCHH----HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHH-HHhhCCceeEEECCCCcCcCcCHH----HHHHHHHHHHhCCCcCeEeccCCC
Confidence 111 134445566666654321 111 011233445555566666555443
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.14 E-value=0.037 Score=42.50 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=16.0
Q ss_pred CcEEEcccccCCC--cccccCcCCCCEEEeeCCCC
Q 038338 198 LQTLCLDWCQLED--VAAIGQLKKLEILNLADSNI 230 (421)
Q Consensus 198 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l 230 (421)
|++|++++|.++. +..+..+++|+.|+|.+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555555444 23344455555555555443
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.47 E-value=0.065 Score=41.07 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=14.0
Q ss_pred CCEEeccCCcCCcccchhhhcCCCCCcEEEcccC
Q 038338 243 LRLLDLTNCWSLQVIAPNVISKLSRLEELYMDNS 276 (421)
Q Consensus 243 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 276 (421)
|++|++++| .+..++.+.+..+++|+.|++.+|
T Consensus 33 l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 444444442 333344333444444444444444
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.11 E-value=92 Score=21.90 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHhccCCCccEEEccCCCCCCC-ChhhhcccCCcEEEccc
Q 038338 167 LFFEGTEELKVLSLIGIHFSSL-PSSLGRLINLQTLCLDW 205 (421)
Q Consensus 167 ~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 205 (421)
..|.++..|+.+.+..+ ++.+ ...+..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444455555544433 2222 12244444555544443
Done!