BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038341
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQN 167
KR + +E NR +A +SR K+ +V LEKKA+ L + L +V+L +N
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168
KR R+ NR +A++SR KK +YV LE + LENQ L ++ +++
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSL 164
KR+R NR++A KSR +KL+ + LE+K K L+ Q + L ++
Sbjct: 6 KRMR----NRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANM 48
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQR 177
KR+R NR++A KSR +KL+ + LE+K K L+ Q + L ++ + ++ Q +Q+
Sbjct: 5 KRMR----NRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR--EQVAQLKQK 58
Query: 178 SLS 180
++
Sbjct: 59 VMN 61
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 32.7 bits (73), Expect = 0.27, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQR 177
KR+R NR++A KSR +KL+ + LE+K K L+ Q + L ++ + ++ Q +Q+
Sbjct: 6 KRMR----NRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR--EQVAQLKQK 59
Query: 178 SLS 180
++
Sbjct: 60 VMN 62
>pdb|1S9K|E Chain E, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2
Arre1 Site
Length = 52
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSL 164
KR+R NR++A K R +KL+ + LE+K K L+ Q + L ++
Sbjct: 2 KRMR----NRIAASKCRKRKLERIARLEEKVKTLKAQNSELASTANM 44
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 68 MVNDFDNNKTSGNRNPSPPSEHKMVIPSSGDDTAAVNTRWTRNAEHSMDPK---RLRRIE 124
++ + NNK + R + + ++ A N +N SM + RL++ E
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 125 SNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184
+R +K + K +DL ++ L+ QIA L Q++ +E LQ L + +
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA---KKEEELQAALARLEDETS 1109
Query: 185 TYNN 188
NN
Sbjct: 1110 QKNN 1113
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 114 SMDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKA-------LENQIAML 158
S DP L+R N +A++SR +KLQ + LE K + LEN++A L
Sbjct: 5 SSDPAALKRAR-NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 55
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 114 SMDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKA-------LENQIAML 158
S DP L+R N +A++SR +KLQ + LE K + LEN++A L
Sbjct: 6 SSDPAALKRAR-NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 56
>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
Length = 57
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKA-------LENQIAML 158
DP L+R N +A++SR +KLQ + LE K + LEN++A L
Sbjct: 2 DPAALKRAR-NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 50
>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
Length = 58
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKA-------LENQIAML 158
DP L+R N +A++SR +KLQ + LE K + LEN++A L
Sbjct: 3 DPAALKRAR-NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 51
>pdb|3C9I|A Chain A, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|B Chain B, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|C Chain C, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|D Chain D, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|E Chain E, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|F Chain F, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
Length = 242
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 91 MVIPSSGDDTAAVNTRWTRNAEHSMDPKRLRRIESNRVSAQKSRMKKLQY-VTDLEKKAK 149
+ + + G D A+ + + + D + + ++ ++R+K+L+ V D E +
Sbjct: 42 LYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRIT 101
Query: 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAE 196
A I L +V+ + LQ +L R+TT NNI + A+
Sbjct: 102 ANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQAD 148
>pdb|2I65|A Chain A, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2I65|B Chain B, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2O3Q|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3Q|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3T|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3T|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3U|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3U|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2PGL|A Chain A, Catalysis Associated Conformational Changes Revealed By
Human Cd38 Complexed With A Non-Hydrolyzable Substrate
Analog
pdb|2PGL|B Chain B, Catalysis Associated Conformational Changes Revealed By
Human Cd38 Complexed With A Non-Hydrolyzable Substrate
Analog
Length = 262
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 202 AWVIHGGREDSRDLCQDPTIKELESIISKRN 232
>pdb|2I66|A Chain A, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2I66|B Chain B, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2I67|A Chain A, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2I67|B Chain B, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2PGJ|A Chain A, Catalysis Associated Conformational Changes Revealed By
Human Cd38 Complexed With A Non-Hydrolyzable Substrate
Analog
pdb|2PGJ|B Chain B, Catalysis Associated Conformational Changes Revealed By
Human Cd38 Complexed With A Non-Hydrolyzable Substrate
Analog
pdb|3DZF|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|C Chain C, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|D Chain D, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|E Chain E, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|F Chain F, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZG|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain,
Ara-F- Ribose-5'-PhosphateNICOTINAMIDE COMPLEX
pdb|3DZG|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain,
Ara-F- Ribose-5'-PhosphateNICOTINAMIDE COMPLEX
pdb|3DZH|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain, Gtp
Complex
pdb|3DZH|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain, Gtp
Complex
pdb|3DZI|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain,
Ribose-5'-phosphate Intermediate/gtp Complex
pdb|3DZI|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain,
Ribose-5'-phosphate Intermediate/gtp Complex
pdb|3DZK|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain, Nmn
Complex
pdb|3DZK|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain, Nmn
Complex
pdb|3I9M|A Chain A, Crystal Structure Of Human Cd38 Complexed With An Analog
Ara-2'f-Adpr
pdb|3I9M|B Chain B, Crystal Structure Of Human Cd38 Complexed With An Analog
Ara-2'f-Adpr
pdb|3I9N|A Chain A, Crystal Structure Of Human Cd38 Complexed With An Analog
Ribo-2'f-Adp Ribose
pdb|3I9N|B Chain B, Crystal Structure Of Human Cd38 Complexed With An Analog
Ribo-2'f-Adp Ribose
pdb|3U4H|A Chain A, Cd38 Structure-Based Inhibitor Design Using The N1-Cyclic
Inosine 5'- Diphosphate Ribose Template
pdb|3U4H|B Chain B, Cd38 Structure-Based Inhibitor Design Using The N1-Cyclic
Inosine 5'- Diphosphate Ribose Template
pdb|3U4I|A Chain A, Cd38 Structure-Based Inhibitor Design Using The N1-Cyclic
Inosine 5'- Diphosphate Ribose Template
pdb|3U4I|B Chain B, Cd38 Structure-Based Inhibitor Design Using The N1-Cyclic
Inosine 5'- Diphosphate Ribose Template
Length = 262
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 202 AWVIHGGREDSRDLCQDPTIKELESIISKRN 232
>pdb|3DZJ|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain E226q
Mutant, Nmn Complex
pdb|3DZJ|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain E226q
Mutant, Nmn Complex
Length = 262
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 202 AWVIHGGREDSRDLCQDPTIKELESIISKRN 232
>pdb|2O3R|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3R|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
Length = 262
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 202 AWVIHGGREDSRDLCQDPTIKELESIISKRN 232
>pdb|3F6Y|A Chain A, Conformational Closure Of The Catalytic Site Of Human Cd38
Induced By Calcium
Length = 262
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 202 AWVIHGGREDSRDLCQDPTIKELESIISKRN 232
>pdb|2HCT|A Chain A, Acidic Residues At The Active Sites Of Cd38 And
Adp-Ribosyl Cyclase Determine Naapd Synthesis And
Hydrolysis Activities
pdb|2HCT|B Chain B, Acidic Residues At The Active Sites Of Cd38 And
Adp-Ribosyl Cyclase Determine Naapd Synthesis And
Hydrolysis Activities
Length = 262
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 202 AWVIHGGREDSRDLCQDPTIKELESIISKRN 232
>pdb|2O3S|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3S|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
Length = 262
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 202 AWVIHGGREDSRDLCQDPTIKELESIISKRN 232
>pdb|3ROK|A Chain A, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-27
pdb|3ROK|B Chain B, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-27
pdb|3ROM|A Chain A, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-48
pdb|3ROM|B Chain B, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-48
pdb|3ROQ|A Chain A, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-46
pdb|3ROQ|B Chain B, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-46
pdb|3ROP|A Chain A, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-50b
pdb|3ROP|B Chain B, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-50b
Length = 254
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 198 AWVIHGGREDSRDLCQDPTIKELESIISKRN 228
>pdb|1YH3|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain
pdb|1YH3|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain
Length = 256
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 196 AWVIHGGREDSRDLCQDPTIKELESIISKRN 226
>pdb|3RAJ|A Chain A, Crystal Structure Of Human Cd38 In Complex With The Fab
Fragment Of Antibody Hb7
Length = 257
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 197 AWVIHGGREDSRDLCQDPTIKELESIISKRN 227
>pdb|1ZVM|A Chain A, Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl
SynthetaseNAD+ Glycohydrolase
pdb|1ZVM|B Chain B, Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl
SynthetaseNAD+ Glycohydrolase
pdb|1ZVM|C Chain C, Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl
SynthetaseNAD+ Glycohydrolase
pdb|1ZVM|D Chain D, Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl
SynthetaseNAD+ Glycohydrolase
Length = 256
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 196 AWVIHGGREDSRDLCQDPTIKELESIISKRN 226
>pdb|3OFS|A Chain A, Dynamic Conformations Of The Cd38-Mediated Nad Cyclization
Captured Using Multi-Copy Crystallography
pdb|3OFS|B Chain B, Dynamic Conformations Of The Cd38-Mediated Nad Cyclization
Captured Using Multi-Copy Crystallography
pdb|3OFS|C Chain C, Dynamic Conformations Of The Cd38-Mediated Nad Cyclization
Captured Using Multi-Copy Crystallography
pdb|3OFS|D Chain D, Dynamic Conformations Of The Cd38-Mediated Nad Cyclization
Captured Using Multi-Copy Crystallography
pdb|3OFS|E Chain E, Dynamic Conformations Of The Cd38-Mediated Nad Cyclization
Captured Using Multi-Copy Crystallography
pdb|3OFS|F Chain F, Dynamic Conformations Of The Cd38-Mediated Nad Cyclization
Captured Using Multi-Copy Crystallography
Length = 257
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 197 AWVIHGGREDSRDLCQDPTIKELESIISKRN 227
>pdb|2EF1|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Cd38
pdb|2EF1|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Cd38
Length = 256
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 311 SWILQSGPPENADMMTDPNLGGIEQILSLNN 341
+W++ G ++ D+ DP + +E I+S N
Sbjct: 196 AWVIHGGREDSRDLCQDPTIKELESIISKRN 226
>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 27.7 bits (60), Expect = 9.2, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 118 KRLRRIESNRVSAQKSRMKKLQ-------YVTDLEKKAKALENQIAMLTPQVSLYQNMQE 170
K+L+++E N+ +A + R KK +LEKK +AL+ + L ++ +++ E
Sbjct: 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,159,178
Number of Sequences: 62578
Number of extensions: 395586
Number of successful extensions: 613
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 51
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)