Query 038341
Match_columns 351
No_of_seqs 201 out of 673
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:00:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4005 Transcription factor X 99.5 1.3E-13 2.8E-18 130.6 14.7 97 100-210 50-147 (292)
2 smart00338 BRLZ basic region l 99.4 9.6E-13 2.1E-17 100.0 9.6 62 115-176 2-63 (65)
3 PF00170 bZIP_1: bZIP transcri 99.3 1.2E-11 2.6E-16 93.8 9.4 61 116-176 3-63 (64)
4 PF07716 bZIP_2: Basic region 99.1 6.3E-10 1.4E-14 82.4 8.1 53 115-168 2-54 (54)
5 KOG4343 bZIP transcription fac 99.1 2.3E-10 5.1E-15 117.9 7.2 64 118-181 281-344 (655)
6 KOG0709 CREB/ATF family transc 99.0 5.1E-10 1.1E-14 113.7 6.4 66 116-181 249-314 (472)
7 KOG3584 cAMP response element 98.9 2.1E-09 4.6E-14 104.5 6.3 52 116-167 289-340 (348)
8 KOG0837 Transcriptional activa 98.1 6.8E-06 1.5E-10 79.3 7.4 52 117-168 204-256 (279)
9 PF03131 bZIP_Maf: bZIP Maf tr 98.1 4.9E-08 1.1E-12 79.4 -7.3 52 116-167 28-79 (92)
10 KOG4571 Activating transcripti 97.5 0.00089 1.9E-08 65.7 11.6 55 113-167 221-276 (294)
11 KOG3119 Basic region leucine z 97.4 0.008 1.7E-07 57.8 15.9 55 115-169 191-245 (269)
12 KOG4196 bZIP transcription fac 97.4 0.0016 3.6E-08 57.5 9.8 47 116-162 51-97 (135)
13 PF06156 DUF972: Protein of un 96.4 0.014 3.1E-07 49.6 7.7 50 139-188 8-57 (107)
14 PF11559 ADIP: Afadin- and alp 96.4 0.16 3.5E-06 44.1 14.4 96 119-216 32-127 (151)
15 KOG3863 bZIP transcription fac 96.4 0.0064 1.4E-07 64.7 6.6 63 120-189 492-554 (604)
16 PRK13169 DNA replication intia 96.4 0.015 3.2E-07 49.9 7.4 49 140-188 9-57 (110)
17 PF06005 DUF904: Protein of un 96.3 0.063 1.4E-06 42.9 10.1 50 139-188 4-53 (72)
18 PF14197 Cep57_CLD_2: Centroso 95.5 0.17 3.6E-06 40.1 9.2 60 143-209 2-61 (69)
19 COG1579 Zn-ribbon protein, pos 95.2 0.76 1.6E-05 44.3 14.5 98 116-213 29-135 (239)
20 COG4467 Regulator of replicati 95.1 0.075 1.6E-06 46.0 6.7 46 140-185 9-54 (114)
21 TIGR02894 DNA_bind_RsfA transc 94.8 0.24 5.1E-06 45.4 9.4 65 139-210 87-154 (161)
22 PF14197 Cep57_CLD_2: Centroso 94.8 0.2 4.3E-06 39.7 7.9 49 139-187 12-60 (69)
23 PRK10884 SH3 domain-containing 94.7 0.27 5.9E-06 46.0 9.9 52 152-210 117-168 (206)
24 KOG4005 Transcription factor X 94.7 0.49 1.1E-05 46.2 11.8 87 112-198 67-156 (292)
25 PF10224 DUF2205: Predicted co 94.7 0.16 3.5E-06 41.6 7.3 48 142-189 19-66 (80)
26 PF05266 DUF724: Protein of un 94.4 1.4 2.9E-05 41.0 13.5 94 116-209 87-180 (190)
27 PF04111 APG6: Autophagy prote 94.1 0.76 1.6E-05 45.3 12.0 45 142-186 46-90 (314)
28 TIGR02449 conserved hypothetic 94.0 0.65 1.4E-05 36.8 9.1 42 142-183 3-44 (65)
29 PF10473 CENP-F_leu_zip: Leuci 93.9 2.3 5.1E-05 38.0 13.6 71 120-190 33-103 (140)
30 PF12325 TMF_TATA_bd: TATA ele 93.8 1 2.2E-05 39.3 10.8 46 170-217 71-116 (120)
31 COG2433 Uncharacterized conser 93.7 0.47 1E-05 51.2 10.3 44 140-183 423-466 (652)
32 PF14662 CCDC155: Coiled-coil 93.7 0.9 2E-05 42.8 11.0 54 140-193 9-62 (193)
33 PF04102 SlyX: SlyX; InterPro 93.6 0.36 7.7E-06 37.8 7.1 49 139-187 4-52 (69)
34 PF10186 Atg14: UV radiation r 93.6 2.3 5E-05 39.4 13.6 54 131-184 55-108 (302)
35 PF08614 ATG16: Autophagy prot 93.5 2 4.3E-05 39.1 12.8 48 136-183 134-181 (194)
36 PRK02793 phi X174 lysis protei 93.3 0.55 1.2E-05 37.3 7.7 49 139-187 8-56 (72)
37 PRK00295 hypothetical protein; 93.2 0.58 1.3E-05 36.8 7.7 48 140-187 6-53 (68)
38 PF09755 DUF2046: Uncharacteri 93.2 3.6 7.9E-05 41.2 14.9 55 165-219 183-253 (310)
39 PRK11637 AmiB activator; Provi 93.1 1.7 3.7E-05 43.8 12.8 44 140-183 69-112 (428)
40 PF11559 ADIP: Afadin- and alp 93.1 3.5 7.5E-05 35.9 13.2 64 121-184 48-111 (151)
41 PRK00736 hypothetical protein; 93.1 0.62 1.3E-05 36.6 7.7 48 139-186 5-52 (68)
42 TIGR02449 conserved hypothetic 93.1 0.64 1.4E-05 36.8 7.7 47 140-186 8-54 (65)
43 PRK04325 hypothetical protein; 93.1 0.61 1.3E-05 37.2 7.7 48 140-187 10-57 (74)
44 PRK02119 hypothetical protein; 93.0 0.64 1.4E-05 37.1 7.7 48 139-186 9-56 (73)
45 PF10481 CENP-F_N: Cenp-F N-te 92.9 4.2 9.1E-05 40.5 14.7 93 118-210 18-124 (307)
46 PRK04406 hypothetical protein; 92.9 0.65 1.4E-05 37.3 7.7 48 139-186 11-58 (75)
47 PRK15422 septal ring assembly 92.9 1.2 2.7E-05 36.6 9.3 48 139-186 4-51 (79)
48 KOG3119 Basic region leucine z 92.8 1.8 3.9E-05 41.9 12.0 60 137-210 192-251 (269)
49 PF06005 DUF904: Protein of un 92.7 0.71 1.5E-05 36.9 7.6 33 148-180 20-52 (72)
50 COG3074 Uncharacterized protei 92.7 1.7 3.7E-05 35.5 9.7 47 140-186 5-51 (79)
51 PRK11637 AmiB activator; Provi 92.7 2.7 5.9E-05 42.4 13.5 58 130-187 66-123 (428)
52 KOG1414 Transcriptional activa 92.5 0.0074 1.6E-07 60.8 -4.9 56 110-165 146-205 (395)
53 PF12711 Kinesin-relat_1: Kine 92.5 1.5 3.2E-05 36.6 9.4 58 151-210 22-85 (86)
54 PF07989 Microtub_assoc: Micro 92.4 1.2 2.7E-05 35.8 8.6 56 141-210 2-65 (75)
55 PRK13729 conjugal transfer pil 92.4 0.67 1.4E-05 48.7 9.0 44 141-184 78-121 (475)
56 PF07106 TBPIP: Tat binding pr 92.3 1.9 4.1E-05 38.2 10.6 73 138-210 85-160 (169)
57 PF14662 CCDC155: Coiled-coil 92.2 2.2 4.7E-05 40.3 11.2 54 142-195 98-151 (193)
58 PF13747 DUF4164: Domain of un 92.2 2.2 4.8E-05 35.2 10.1 70 117-186 10-79 (89)
59 PF08614 ATG16: Autophagy prot 92.2 0.58 1.3E-05 42.6 7.4 20 143-162 120-139 (194)
60 PRK09039 hypothetical protein; 92.0 3.2 6.9E-05 41.4 13.0 46 144-189 121-166 (343)
61 PF05911 DUF869: Plant protein 92.0 1.5 3.3E-05 48.5 11.5 70 141-210 94-205 (769)
62 PRK10884 SH3 domain-containing 91.9 2.3 4.9E-05 40.0 11.1 43 141-183 120-162 (206)
63 KOG1414 Transcriptional activa 91.8 0.12 2.6E-06 52.2 2.8 50 110-159 277-326 (395)
64 PF10146 zf-C4H2: Zinc finger- 91.7 5.1 0.00011 38.3 13.3 81 130-210 23-103 (230)
65 TIGR03752 conj_TIGR03752 integ 91.3 1.2 2.6E-05 46.8 9.3 14 197-210 118-131 (472)
66 PRK00846 hypothetical protein; 91.1 1.4 3.1E-05 35.9 7.7 49 139-187 13-61 (77)
67 KOG0995 Centromere-associated 90.6 4.2 9E-05 43.8 12.7 48 138-185 279-326 (581)
68 PF09726 Macoilin: Transmembra 90.6 4.1 9E-05 44.6 13.0 41 142-182 541-581 (697)
69 PRK09039 hypothetical protein; 90.5 4.3 9.2E-05 40.5 12.1 40 147-186 138-177 (343)
70 TIGR03752 conj_TIGR03752 integ 90.3 2.7 5.9E-05 44.2 10.9 8 319-326 239-246 (472)
71 PF10473 CENP-F_leu_zip: Leuci 90.3 10 0.00022 34.0 13.1 15 139-153 24-38 (140)
72 PF04880 NUDE_C: NUDE protein, 90.1 0.48 1E-05 43.4 4.8 52 141-196 2-53 (166)
73 PF09726 Macoilin: Transmembra 90.1 5.7 0.00012 43.6 13.5 38 129-166 478-515 (697)
74 COG3074 Uncharacterized protei 90.1 1.3 2.7E-05 36.2 6.5 43 141-183 20-62 (79)
75 KOG2391 Vacuolar sorting prote 90.0 21 0.00045 36.7 16.3 56 144-206 223-278 (365)
76 PF04156 IncA: IncA protein; 89.9 6.2 0.00013 35.2 11.6 46 142-187 91-136 (191)
77 PF11932 DUF3450: Protein of u 89.7 10 0.00023 35.6 13.4 42 145-186 55-96 (251)
78 PF15035 Rootletin: Ciliary ro 89.5 3.6 7.9E-05 38.0 10.0 77 140-218 68-152 (182)
79 PF10186 Atg14: UV radiation r 89.4 18 0.00039 33.6 14.9 34 134-167 65-98 (302)
80 PF07888 CALCOCO1: Calcium bin 89.2 9.3 0.0002 41.1 14.0 58 122-179 154-211 (546)
81 PF15290 Syntaphilin: Golgi-lo 89.2 10 0.00022 38.0 13.2 24 171-194 121-144 (305)
82 KOG0250 DNA repair protein RAD 89.1 8 0.00017 44.4 14.0 138 129-269 369-518 (1074)
83 KOG0982 Centrosomal protein Nu 89.0 5 0.00011 42.2 11.4 47 141-187 299-345 (502)
84 KOG0239 Kinesin (KAR3 subfamil 88.8 4.4 9.5E-05 44.2 11.5 69 141-209 243-314 (670)
85 PF12718 Tropomyosin_1: Tropom 88.8 4.9 0.00011 35.6 10.0 10 178-187 77-86 (143)
86 KOG2751 Beclin-like protein [S 88.8 15 0.00033 38.5 14.8 91 128-218 153-262 (447)
87 PF08317 Spc7: Spc7 kinetochor 88.7 4.3 9.4E-05 39.9 10.5 16 203-220 277-292 (325)
88 KOG1962 B-cell receptor-associ 88.7 6.3 0.00014 37.8 11.1 60 144-210 149-208 (216)
89 PRK15422 septal ring assembly 88.6 5.1 0.00011 33.1 9.1 38 145-182 24-61 (79)
90 COG2433 Uncharacterized conser 88.6 4 8.6E-05 44.4 10.8 86 125-210 421-510 (652)
91 PF07888 CALCOCO1: Calcium bin 88.5 7.9 0.00017 41.6 12.9 56 131-186 149-204 (546)
92 PF15070 GOLGA2L5: Putative go 88.4 8.1 0.00018 41.8 13.1 62 125-186 108-193 (617)
93 KOG1853 LIS1-interacting prote 88.2 8.3 0.00018 38.4 11.9 55 123-177 75-129 (333)
94 PHA02562 46 endonuclease subun 88.1 9.7 0.00021 38.9 12.9 9 279-287 497-505 (562)
95 PF07106 TBPIP: Tat binding pr 88.1 3.1 6.8E-05 36.9 8.3 26 141-166 81-106 (169)
96 PF08317 Spc7: Spc7 kinetochor 88.0 12 0.00027 36.8 13.1 43 167-209 216-258 (325)
97 KOG0243 Kinesin-like protein [ 88.0 5.2 0.00011 45.7 11.7 46 140-185 449-494 (1041)
98 PF09730 BicD: Microtubule-ass 87.9 6.5 0.00014 43.4 12.1 50 141-190 71-120 (717)
99 PF00038 Filament: Intermediat 87.8 22 0.00048 33.8 14.4 63 148-210 211-277 (312)
100 TIGR02168 SMC_prok_B chromosom 87.8 11 0.00024 41.1 13.7 7 343-349 1117-1123(1179)
101 COG4942 Membrane-bound metallo 87.8 8.6 0.00019 40.1 12.3 73 118-190 38-110 (420)
102 PF02403 Seryl_tRNA_N: Seryl-t 87.7 12 0.00027 30.6 11.1 13 125-137 9-21 (108)
103 KOG3650 Predicted coiled-coil 87.6 1.8 3.8E-05 37.6 6.1 45 144-188 61-105 (120)
104 PF05700 BCAS2: Breast carcino 87.5 8.3 0.00018 36.1 11.1 72 139-210 136-211 (221)
105 PF03962 Mnd1: Mnd1 family; I 87.4 9.6 0.00021 35.2 11.3 40 168-210 111-150 (188)
106 KOG4571 Activating transcripti 87.4 1.6 3.5E-05 43.4 6.6 39 159-211 247-285 (294)
107 TIGR03495 phage_LysB phage lys 87.3 6 0.00013 35.3 9.5 69 142-210 29-97 (135)
108 PF06428 Sec2p: GDP/GTP exchan 87.3 1.1 2.3E-05 38.0 4.6 70 139-210 8-80 (100)
109 PF11932 DUF3450: Protein of u 87.2 17 0.00036 34.3 13.1 44 136-179 53-96 (251)
110 PRK04863 mukB cell division pr 87.2 11 0.00023 44.8 14.0 49 162-210 378-426 (1486)
111 PF00769 ERM: Ezrin/radixin/mo 87.0 13 0.00028 35.5 12.3 68 143-210 51-118 (246)
112 PF15030 DUF4527: Protein of u 86.9 12 0.00026 36.9 12.0 93 114-206 11-104 (277)
113 PF05837 CENP-H: Centromere pr 86.9 3.6 7.8E-05 34.6 7.6 49 147-195 4-52 (106)
114 PF06216 RTBV_P46: Rice tungro 86.6 3.2 6.9E-05 41.3 8.1 49 139-187 64-112 (389)
115 PF02183 HALZ: Homeobox associ 86.5 3.2 6.8E-05 30.6 6.1 38 144-181 3-40 (45)
116 PF00038 Filament: Intermediat 86.3 9 0.00019 36.5 10.9 64 147-210 76-139 (312)
117 KOG0971 Microtubule-associated 86.2 13 0.00028 42.6 13.2 47 122-168 284-347 (1243)
118 COG3883 Uncharacterized protei 85.9 9.2 0.0002 37.7 10.8 53 137-189 36-88 (265)
119 PF13870 DUF4201: Domain of un 85.9 23 0.00051 31.6 12.7 95 116-210 64-167 (177)
120 PF09304 Cortex-I_coil: Cortex 85.7 6.7 0.00015 34.0 8.7 42 142-183 19-60 (107)
121 PF02183 HALZ: Homeobox associ 85.7 2 4.3E-05 31.6 4.8 38 150-187 2-39 (45)
122 PF10211 Ax_dynein_light: Axon 85.6 11 0.00023 34.9 10.6 56 142-210 123-178 (189)
123 PF13851 GAS: Growth-arrest sp 85.5 19 0.00041 33.5 12.2 45 142-186 89-133 (201)
124 PF09744 Jnk-SapK_ap_N: JNK_SA 85.3 25 0.00054 32.0 12.6 45 149-193 85-130 (158)
125 PF10805 DUF2730: Protein of u 85.2 5.1 0.00011 33.7 7.7 43 145-187 48-92 (106)
126 KOG1899 LAR transmembrane tyro 85.0 12 0.00026 41.3 12.0 92 123-218 129-228 (861)
127 PF07798 DUF1640: Protein of u 84.9 7.2 0.00016 35.2 9.0 46 142-187 47-93 (177)
128 KOG0933 Structural maintenance 84.8 11 0.00025 43.2 12.1 70 141-210 789-858 (1174)
129 PF04156 IncA: IncA protein; 84.6 11 0.00024 33.5 10.0 46 165-210 128-173 (191)
130 PF04849 HAP1_N: HAP1 N-termin 84.3 9.3 0.0002 38.4 10.2 72 139-210 160-242 (306)
131 PF12329 TMF_DNA_bd: TATA elem 84.3 13 0.00028 29.7 9.2 62 142-210 8-69 (74)
132 PF04111 APG6: Autophagy prote 84.1 25 0.00054 34.9 13.1 83 128-210 53-135 (314)
133 PF14523 Syntaxin_2: Syntaxin- 84.0 20 0.00044 28.7 10.7 77 140-218 11-92 (102)
134 PF04849 HAP1_N: HAP1 N-termin 83.9 8.3 0.00018 38.7 9.7 62 142-210 220-284 (306)
135 PF12709 Kinetocho_Slk19: Cent 83.9 5.1 0.00011 33.5 7.0 42 137-178 40-81 (87)
136 KOG0161 Myosin class II heavy 83.8 12 0.00026 45.5 12.5 64 124-187 1645-1708(1930)
137 PF10211 Ax_dynein_light: Axon 83.7 21 0.00045 33.0 11.6 48 136-183 124-172 (189)
138 COG1579 Zn-ribbon protein, pos 83.7 17 0.00036 35.3 11.4 69 138-209 88-156 (239)
139 PRK03918 chromosome segregatio 83.5 25 0.00053 38.2 13.8 10 278-287 812-821 (880)
140 COG4026 Uncharacterized protei 83.3 10 0.00022 37.2 9.7 33 141-173 137-169 (290)
141 KOG0977 Nuclear envelope prote 83.2 18 0.00039 39.0 12.3 48 140-187 142-189 (546)
142 smart00787 Spc7 Spc7 kinetocho 82.8 30 0.00066 34.4 13.1 40 142-181 147-186 (312)
143 PF06785 UPF0242: Uncharacteri 82.5 29 0.00063 35.8 12.9 48 136-183 124-171 (401)
144 PHA02562 46 endonuclease subun 82.4 24 0.00053 36.1 12.7 31 135-165 170-200 (562)
145 PF12325 TMF_TATA_bd: TATA ele 82.2 12 0.00025 32.7 8.8 66 141-210 18-83 (120)
146 PF08172 CASP_C: CASP C termin 82.2 3.8 8.2E-05 39.5 6.4 39 128-168 84-122 (248)
147 TIGR00219 mreC rod shape-deter 82.1 3.5 7.5E-05 40.1 6.2 13 198-210 94-106 (283)
148 PF10805 DUF2730: Protein of u 82.1 13 0.00028 31.3 8.8 49 139-187 35-85 (106)
149 PRK13922 rod shape-determining 82.0 10 0.00022 35.9 9.2 38 169-210 71-108 (276)
150 KOG2391 Vacuolar sorting prote 81.8 34 0.00073 35.2 13.1 55 122-178 224-278 (365)
151 PRK13922 rod shape-determining 81.7 16 0.00036 34.6 10.5 35 150-184 73-110 (276)
152 KOG0976 Rho/Rac1-interacting s 81.7 11 0.00023 42.8 10.2 66 144-209 90-155 (1265)
153 PRK12704 phosphodiesterase; Pr 81.6 53 0.0011 34.9 15.0 13 261-273 229-241 (520)
154 PF05103 DivIVA: DivIVA protei 81.6 0.82 1.8E-05 38.1 1.6 49 139-187 25-73 (131)
155 PF13851 GAS: Growth-arrest sp 81.5 46 0.00099 31.0 13.3 56 118-173 72-127 (201)
156 COG4372 Uncharacterized protei 81.5 35 0.00076 35.9 13.3 14 197-210 212-225 (499)
157 PRK00888 ftsB cell division pr 81.4 6 0.00013 33.4 6.6 33 156-188 30-62 (105)
158 PF06785 UPF0242: Uncharacteri 81.2 8.4 0.00018 39.5 8.7 61 147-207 100-174 (401)
159 COG2900 SlyX Uncharacterized p 81.2 11 0.00024 30.7 7.7 48 139-186 8-55 (72)
160 PF09304 Cortex-I_coil: Cortex 81.2 31 0.00067 30.0 10.9 72 131-205 22-94 (107)
161 PF12711 Kinesin-relat_1: Kine 81.2 4.7 0.0001 33.6 5.8 64 147-211 4-67 (86)
162 PF10234 Cluap1: Clusterin-ass 81.1 21 0.00046 35.2 11.1 70 141-210 171-240 (267)
163 KOG1265 Phospholipase C [Lipid 81.0 25 0.00055 40.3 12.8 72 116-187 1026-1102(1189)
164 COG1340 Uncharacterized archae 80.7 29 0.00063 34.8 12.1 93 118-210 26-122 (294)
165 PF08232 Striatin: Striatin fa 80.6 12 0.00026 32.9 8.4 52 159-210 10-61 (134)
166 KOG4370 Ral-GTPase effector RL 80.3 5.5 0.00012 42.0 7.2 46 156-217 409-454 (514)
167 PF15397 DUF4618: Domain of un 80.3 36 0.00078 33.5 12.4 76 134-209 76-156 (258)
168 KOG0971 Microtubule-associated 80.3 14 0.0003 42.3 10.6 82 127-208 398-503 (1243)
169 PF12777 MT: Microtubule-bindi 80.2 7.9 0.00017 38.3 8.0 66 113-183 214-279 (344)
170 PRK13169 DNA replication intia 80.1 14 0.0003 31.9 8.5 40 143-182 5-44 (110)
171 PF08232 Striatin: Striatin fa 80.0 13 0.00027 32.7 8.4 59 142-210 14-72 (134)
172 KOG2010 Double stranded RNA bi 79.9 7.7 0.00017 39.7 7.8 63 141-210 121-183 (405)
173 PHA03161 hypothetical protein; 79.8 34 0.00073 31.4 11.2 74 125-210 42-115 (150)
174 PF10168 Nup88: Nuclear pore c 79.7 47 0.001 36.8 14.3 34 140-173 580-613 (717)
175 KOG4643 Uncharacterized coiled 79.6 7.5 0.00016 44.6 8.4 73 138-210 263-337 (1195)
176 PRK10803 tol-pal system protei 79.6 11 0.00025 36.1 8.7 46 141-186 56-101 (263)
177 KOG4807 F-actin binding protei 79.4 19 0.00042 37.9 10.7 89 122-210 374-489 (593)
178 KOG4343 bZIP transcription fac 79.4 10 0.00022 41.0 8.9 67 113-190 273-339 (655)
179 smart00338 BRLZ basic region l 79.3 22 0.00047 26.9 8.5 34 148-181 28-61 (65)
180 PRK02224 chromosome segregatio 79.2 28 0.00062 37.9 12.5 53 134-186 587-639 (880)
181 KOG1103 Predicted coiled-coil 78.8 9 0.00019 39.8 8.0 61 127-187 226-286 (561)
182 PF02841 GBP_C: Guanylate-bind 78.5 56 0.0012 31.6 13.1 13 196-208 285-297 (297)
183 PRK10698 phage shock protein P 78.5 42 0.0009 31.7 11.9 70 141-210 101-181 (222)
184 PF07407 Seadorna_VP6: Seadorn 78.5 8.4 0.00018 39.5 7.7 15 227-241 123-137 (420)
185 cd07627 BAR_Vps5p The Bin/Amph 78.4 50 0.0011 30.6 12.2 86 122-210 98-183 (216)
186 PF12329 TMF_DNA_bd: TATA elem 77.9 23 0.0005 28.2 8.6 52 137-188 10-61 (74)
187 COG1196 Smc Chromosome segrega 77.9 40 0.00087 38.7 13.6 13 259-271 963-975 (1163)
188 PF08647 BRE1: BRE1 E3 ubiquit 77.9 38 0.00083 28.0 12.0 65 120-184 5-69 (96)
189 PF15058 Speriolin_N: Sperioli 77.8 2.2 4.8E-05 40.4 3.2 43 164-206 9-51 (200)
190 TIGR00219 mreC rod shape-deter 77.6 13 0.00027 36.3 8.4 38 147-184 67-108 (283)
191 PRK02224 chromosome segregatio 77.5 42 0.0009 36.7 13.2 8 280-287 813-820 (880)
192 PF06156 DUF972: Protein of un 77.5 10 0.00023 32.4 6.9 40 144-183 6-45 (107)
193 KOG0996 Structural maintenance 77.4 33 0.00071 40.2 12.6 62 128-189 531-592 (1293)
194 cd07666 BAR_SNX7 The Bin/Amphi 77.3 37 0.00081 32.9 11.4 75 120-204 151-227 (243)
195 KOG4360 Uncharacterized coiled 77.2 30 0.00065 37.4 11.5 40 148-187 228-267 (596)
196 PF01166 TSC22: TSC-22/dip/bun 77.1 4.4 9.5E-05 31.8 4.1 30 154-183 15-44 (59)
197 KOG4643 Uncharacterized coiled 77.0 46 0.001 38.6 13.4 31 137-167 528-558 (1195)
198 PF04977 DivIC: Septum formati 77.0 11 0.00023 28.7 6.3 30 157-186 21-50 (80)
199 KOG0977 Nuclear envelope prote 76.9 32 0.0007 37.1 11.8 21 327-347 317-337 (546)
200 PF04728 LPP: Lipoprotein leuc 76.8 19 0.00042 28.0 7.5 35 141-175 5-39 (56)
201 KOG0999 Microtubule-associated 76.7 26 0.00057 38.3 11.0 76 114-189 113-192 (772)
202 PRK13729 conjugal transfer pil 76.3 8.9 0.00019 40.6 7.4 50 153-209 76-125 (475)
203 PF05791 Bacillus_HBL: Bacillu 76.2 26 0.00057 32.0 9.6 77 131-210 102-178 (184)
204 TIGR02209 ftsL_broad cell divi 76.1 15 0.00032 28.7 7.1 36 153-188 24-59 (85)
205 KOG2629 Peroxisomal membrane a 76.0 19 0.00042 36.1 9.2 71 142-216 125-195 (300)
206 KOG4001 Axonemal dynein light 75.9 26 0.00056 34.1 9.7 59 158-218 190-249 (259)
207 TIGR02977 phageshock_pspA phag 75.8 61 0.0013 30.2 12.1 47 141-187 101-147 (219)
208 KOG4674 Uncharacterized conser 75.8 12 0.00027 45.1 9.1 79 132-210 1236-1322(1822)
209 PF14915 CCDC144C: CCDC144C pr 75.8 56 0.0012 33.0 12.4 68 127-194 181-248 (305)
210 PF15035 Rootletin: Ciliary ro 75.7 48 0.001 30.7 11.2 38 166-210 73-110 (182)
211 PF00170 bZIP_1: bZIP transcri 75.6 25 0.00054 26.6 7.9 23 160-182 33-55 (64)
212 PF04899 MbeD_MobD: MbeD/MobD 75.4 36 0.00079 27.3 9.0 46 144-189 12-57 (70)
213 PF09325 Vps5: Vps5 C terminal 75.4 41 0.0009 30.4 10.7 26 132-157 128-153 (236)
214 smart00787 Spc7 Spc7 kinetocho 75.4 92 0.002 31.1 14.7 7 204-210 273-279 (312)
215 PRK05431 seryl-tRNA synthetase 75.3 34 0.00074 35.2 11.2 49 116-169 10-58 (425)
216 PRK00106 hypothetical protein; 75.2 1.1E+02 0.0023 33.1 15.0 23 261-289 244-266 (535)
217 COG4026 Uncharacterized protei 75.2 54 0.0012 32.4 11.8 48 138-185 141-188 (290)
218 TIGR03319 YmdA_YtgF conserved 75.2 61 0.0013 34.4 13.2 13 261-273 223-235 (514)
219 PF15619 Lebercilin: Ciliary p 75.1 41 0.00089 31.4 10.7 41 170-210 71-111 (194)
220 PF08581 Tup_N: Tup N-terminal 75.0 44 0.00096 27.3 10.5 66 141-210 6-72 (79)
221 PF08702 Fib_alpha: Fibrinogen 75.0 60 0.0013 29.0 11.3 21 195-216 111-131 (146)
222 KOG4360 Uncharacterized coiled 75.0 20 0.00043 38.7 9.6 70 135-204 194-263 (596)
223 PF05377 FlaC_arch: Flagella a 74.7 11 0.00023 29.3 5.6 15 172-186 19-33 (55)
224 PF12777 MT: Microtubule-bindi 74.5 12 0.00027 37.0 7.6 67 140-206 229-295 (344)
225 KOG4403 Cell surface glycoprot 74.5 22 0.00048 37.8 9.6 79 132-210 235-317 (575)
226 PRK05431 seryl-tRNA synthetase 74.4 35 0.00075 35.1 11.0 31 147-177 29-59 (425)
227 KOG4603 TBP-1 interacting prot 74.2 15 0.00033 34.7 7.6 30 150-179 83-112 (201)
228 PF10146 zf-C4H2: Zinc finger- 74.2 41 0.00088 32.3 10.7 37 152-188 31-67 (230)
229 PRK00888 ftsB cell division pr 74.1 15 0.00032 31.1 6.9 32 136-167 31-62 (105)
230 PF08606 Prp19: Prp19/Pso4-lik 73.9 15 0.00033 29.7 6.6 48 161-210 9-65 (70)
231 PF04012 PspA_IM30: PspA/IM30 73.8 66 0.0014 29.4 11.7 40 146-185 105-144 (221)
232 PF12718 Tropomyosin_1: Tropom 73.7 44 0.00096 29.6 10.1 48 140-187 15-62 (143)
233 PF02403 Seryl_tRNA_N: Seryl-t 73.6 47 0.001 27.2 9.6 45 144-188 41-88 (108)
234 PF14817 HAUS5: HAUS augmin-li 73.4 34 0.00074 37.5 11.1 62 138-199 78-139 (632)
235 PF13166 AAA_13: AAA domain 73.4 60 0.0013 34.5 12.8 64 144-207 408-471 (712)
236 KOG1853 LIS1-interacting prote 73.2 85 0.0018 31.6 12.7 42 122-163 28-69 (333)
237 PF09789 DUF2353: Uncharacteri 73.2 80 0.0017 32.0 12.9 44 142-185 68-111 (319)
238 PF05529 Bap31: B-cell recepto 73.2 26 0.00057 31.6 8.8 33 169-208 156-188 (192)
239 TIGR00634 recN DNA repair prot 72.9 14 0.00031 38.8 8.0 67 143-210 158-224 (563)
240 KOG3433 Protein involved in me 72.9 35 0.00077 32.5 9.7 68 134-208 76-143 (203)
241 PF13094 CENP-Q: CENP-Q, a CEN 72.8 26 0.00057 30.8 8.5 47 148-194 29-75 (160)
242 KOG0946 ER-Golgi vesicle-tethe 72.8 60 0.0013 37.0 12.8 59 126-184 658-716 (970)
243 KOG1029 Endocytic adaptor prot 72.8 1.1E+02 0.0023 35.2 14.6 17 51-68 262-278 (1118)
244 smart00503 SynN Syntaxin N-ter 72.7 49 0.0011 26.7 10.6 26 191-218 85-110 (117)
245 COG4372 Uncharacterized protei 72.7 86 0.0019 33.2 13.2 36 144-179 142-177 (499)
246 PF15294 Leu_zip: Leucine zipp 72.5 11 0.00025 37.2 6.7 45 144-188 130-174 (278)
247 KOG0964 Structural maintenance 72.4 83 0.0018 36.7 13.9 94 122-218 401-496 (1200)
248 PF05377 FlaC_arch: Flagella a 72.4 13 0.00028 28.9 5.6 37 141-184 2-38 (55)
249 PF05529 Bap31: B-cell recepto 71.8 28 0.0006 31.4 8.6 27 158-184 159-185 (192)
250 KOG0250 DNA repair protein RAD 71.6 70 0.0015 37.2 13.3 81 129-209 679-769 (1074)
251 PF05483 SCP-1: Synaptonemal c 71.4 35 0.00076 38.0 10.6 63 147-209 588-650 (786)
252 PLN02678 seryl-tRNA synthetase 71.4 35 0.00077 35.7 10.3 49 116-168 14-62 (448)
253 cd07596 BAR_SNX The Bin/Amphip 71.2 71 0.0015 28.0 13.1 66 118-183 96-168 (218)
254 COG3883 Uncharacterized protei 71.1 30 0.00065 34.2 9.2 63 142-210 48-110 (265)
255 PF10212 TTKRSYEDQ: Predicted 71.1 31 0.00067 37.1 9.9 48 142-189 430-477 (518)
256 PRK02119 hypothetical protein; 71.0 24 0.00053 28.1 7.2 25 141-165 4-28 (73)
257 PF09728 Taxilin: Myosin-like 71.0 89 0.0019 31.0 12.6 76 123-198 55-159 (309)
258 KOG1962 B-cell receptor-associ 70.8 16 0.00034 35.2 7.0 52 151-209 149-200 (216)
259 PRK04863 mukB cell division pr 70.7 55 0.0012 39.2 12.7 71 117-187 320-396 (1486)
260 smart00502 BBC B-Box C-termina 70.7 53 0.0011 26.2 12.1 80 131-210 13-94 (127)
261 PF13935 Ead_Ea22: Ead/Ea22-li 70.7 27 0.00058 30.6 8.0 15 133-147 75-89 (139)
262 PF09727 CortBP2: Cortactin-bi 70.6 96 0.0021 29.4 12.0 29 118-148 94-122 (192)
263 PF14915 CCDC144C: CCDC144C pr 70.4 36 0.00079 34.3 9.7 69 132-207 21-96 (305)
264 TIGR02231 conserved hypothetic 70.4 40 0.00086 35.0 10.5 7 227-233 206-212 (525)
265 PRK13923 putative spore coat p 70.3 65 0.0014 30.0 10.7 46 158-210 109-154 (170)
266 PRK04406 hypothetical protein; 69.8 27 0.00059 28.1 7.2 27 141-167 6-32 (75)
267 KOG0980 Actin-binding protein 69.7 1.3E+02 0.0029 34.5 14.7 58 154-211 380-440 (980)
268 TIGR01843 type_I_hlyD type I s 69.6 1.1E+02 0.0025 29.6 13.4 20 142-161 154-173 (423)
269 TIGR03185 DNA_S_dndD DNA sulfu 69.6 74 0.0016 34.1 12.5 49 139-187 421-469 (650)
270 KOG0946 ER-Golgi vesicle-tethe 69.6 22 0.00048 40.2 8.7 50 138-187 649-698 (970)
271 PF09755 DUF2046: Uncharacteri 69.4 38 0.00082 34.2 9.6 40 127-166 28-68 (310)
272 PF05667 DUF812: Protein of un 69.4 56 0.0012 35.5 11.6 34 174-207 447-480 (594)
273 PF05557 MAD: Mitotic checkpoi 69.4 54 0.0012 35.7 11.5 75 140-216 511-632 (722)
274 PF05667 DUF812: Protein of un 69.3 32 0.0007 37.2 9.8 59 138-196 327-385 (594)
275 PF07407 Seadorna_VP6: Seadorn 69.3 9 0.0002 39.3 5.3 23 150-172 36-58 (420)
276 KOG0980 Actin-binding protein 69.0 90 0.0019 35.9 13.2 47 138-184 409-455 (980)
277 KOG0161 Myosin class II heavy 68.9 45 0.00099 40.9 11.7 69 140-208 1640-1708(1930)
278 PF15619 Lebercilin: Ciliary p 68.7 1E+02 0.0022 28.8 12.4 34 132-165 74-108 (194)
279 PF04871 Uso1_p115_C: Uso1 / p 68.6 76 0.0016 28.0 10.4 22 139-160 27-48 (136)
280 PF04642 DUF601: Protein of un 68.5 21 0.00045 35.6 7.5 56 139-194 217-281 (311)
281 PRK00106 hypothetical protein; 68.5 1.7E+02 0.0036 31.6 14.7 14 193-206 171-184 (535)
282 PF08172 CASP_C: CASP C termin 68.5 19 0.0004 34.9 7.1 17 254-270 177-193 (248)
283 PF11180 DUF2968: Protein of u 68.3 1.1E+02 0.0024 29.1 11.9 41 135-175 94-134 (192)
284 KOG0288 WD40 repeat protein Ti 68.3 68 0.0015 33.9 11.4 29 138-166 47-75 (459)
285 PF04102 SlyX: SlyX; InterPro 68.1 33 0.00071 26.8 7.2 27 144-170 2-28 (69)
286 PF04999 FtsL: Cell division p 68.1 21 0.00045 28.9 6.3 37 152-188 34-70 (97)
287 PF06632 XRCC4: DNA double-str 67.8 48 0.001 33.6 10.1 43 140-182 138-180 (342)
288 KOG0996 Structural maintenance 67.8 1.1E+02 0.0024 36.1 13.9 68 117-187 780-847 (1293)
289 TIGR03495 phage_LysB phage lys 67.7 61 0.0013 29.1 9.6 65 152-216 18-82 (135)
290 TIGR00606 rad50 rad50. This fa 67.4 1.1E+02 0.0023 35.8 14.0 36 125-160 843-878 (1311)
291 COG4942 Membrane-bound metallo 67.3 1.1E+02 0.0024 32.2 12.7 64 125-188 38-101 (420)
292 KOG0249 LAR-interacting protei 67.3 81 0.0018 35.6 12.2 95 124-219 144-267 (916)
293 KOG0994 Extracellular matrix g 66.9 1.1E+02 0.0024 36.5 13.6 98 117-216 1169-1286(1758)
294 PF15070 GOLGA2L5: Putative go 66.7 48 0.001 36.1 10.5 57 138-194 166-222 (617)
295 PF08703 PLC-beta_C: PLC-beta 66.6 1.2E+02 0.0025 28.6 12.8 86 121-206 9-104 (185)
296 PF15397 DUF4618: Domain of un 66.6 53 0.0011 32.4 9.8 34 142-175 77-110 (258)
297 PRK10636 putative ABC transpor 66.4 40 0.00088 36.0 9.8 49 140-188 564-619 (638)
298 PF09738 DUF2051: Double stran 66.2 48 0.001 33.1 9.6 14 197-210 149-162 (302)
299 PF15066 CAGE1: Cancer-associa 66.1 33 0.00073 36.6 8.8 76 143-218 342-434 (527)
300 PF10174 Cast: RIM-binding pro 65.8 1.1E+02 0.0024 34.5 13.1 54 150-203 319-372 (775)
301 TIGR01069 mutS2 MutS2 family p 65.6 68 0.0015 35.7 11.5 8 245-252 626-633 (771)
302 PF03980 Nnf1: Nnf1 ; InterPr 65.6 10 0.00023 31.3 4.2 30 137-166 78-107 (109)
303 PF11172 DUF2959: Protein of u 65.6 82 0.0018 30.1 10.6 89 123-216 25-120 (201)
304 KOG0978 E3 ubiquitin ligase in 65.5 62 0.0013 36.0 11.0 83 127-210 561-643 (698)
305 PF13874 Nup54: Nucleoporin co 65.4 40 0.00087 29.5 8.0 47 140-186 52-98 (141)
306 KOG1318 Helix loop helix trans 65.4 1.2E+02 0.0027 31.8 12.6 34 116-149 227-260 (411)
307 PRK10803 tol-pal system protei 65.1 36 0.00077 32.8 8.3 47 141-187 42-88 (263)
308 KOG0963 Transcription factor/C 64.9 46 0.00099 36.5 9.8 45 158-210 315-359 (629)
309 PF15369 KIAA1328: Uncharacter 64.6 76 0.0016 32.4 10.7 54 116-179 6-59 (328)
310 PF12808 Mto2_bdg: Micro-tubul 64.5 20 0.00043 27.5 5.1 46 136-184 1-46 (52)
311 COG1382 GimC Prefoldin, chaper 64.5 33 0.00071 30.3 7.2 13 198-210 94-106 (119)
312 TIGR03185 DNA_S_dndD DNA sulfu 64.4 72 0.0016 34.2 11.2 45 140-184 210-254 (650)
313 PF12128 DUF3584: Protein of u 64.3 1.6E+02 0.0035 34.2 14.6 44 141-184 623-666 (1201)
314 PF09789 DUF2353: Uncharacteri 64.3 83 0.0018 31.9 10.9 34 156-189 68-101 (319)
315 TIGR02894 DNA_bind_RsfA transc 63.8 32 0.0007 31.8 7.3 20 167-186 104-123 (161)
316 TIGR00414 serS seryl-tRNA synt 63.8 69 0.0015 32.9 10.5 11 273-283 191-201 (418)
317 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.5 98 0.0021 26.7 10.3 49 138-187 45-93 (132)
318 TIGR03007 pepcterm_ChnLen poly 63.5 1.2E+02 0.0025 31.0 12.1 16 195-210 355-370 (498)
319 PF05278 PEARLI-4: Arabidopsis 63.4 91 0.002 31.0 10.8 12 172-183 219-230 (269)
320 PF15254 CCDC14: Coiled-coil d 63.2 63 0.0014 36.6 10.6 71 140-210 442-544 (861)
321 KOG0963 Transcription factor/C 63.2 1.5E+02 0.0031 32.9 13.1 64 148-211 230-308 (629)
322 PF03999 MAP65_ASE1: Microtubu 63.2 2.4 5.2E-05 45.2 0.0 119 139-274 207-330 (619)
323 PF05600 DUF773: Protein of un 63.1 43 0.00093 35.5 9.1 53 137-189 430-482 (507)
324 PRK14127 cell division protein 63.1 28 0.00062 30.1 6.5 68 139-214 30-103 (109)
325 KOG4687 Uncharacterized coiled 63.0 1.3E+02 0.0028 30.7 11.8 72 127-198 36-128 (389)
326 PF09738 DUF2051: Double stran 62.8 54 0.0012 32.8 9.2 13 198-210 157-169 (302)
327 PF14282 FlxA: FlxA-like prote 62.8 31 0.00068 29.0 6.6 20 141-160 21-40 (106)
328 PF05615 THOC7: Tho complex su 62.7 1E+02 0.0022 26.5 13.4 89 115-210 13-110 (139)
329 PF07558 Shugoshin_N: Shugoshi 62.6 7.7 0.00017 28.5 2.6 33 151-183 12-44 (46)
330 PRK01156 chromosome segregatio 62.5 1.7E+02 0.0036 32.4 13.7 35 150-184 208-242 (895)
331 KOG0995 Centromere-associated 62.4 68 0.0015 35.0 10.4 60 151-210 264-323 (581)
332 PF15294 Leu_zip: Leucine zipp 62.3 21 0.00046 35.4 6.3 47 164-210 129-175 (278)
333 PF14817 HAUS5: HAUS augmin-li 62.3 1.7E+02 0.0036 32.3 13.5 84 127-210 74-157 (632)
334 PF02050 FliJ: Flagellar FliJ 62.1 74 0.0016 24.9 10.5 58 130-187 10-72 (123)
335 PF14645 Chibby: Chibby family 61.6 18 0.00039 31.3 5.1 24 144-167 76-99 (116)
336 PRK01156 chromosome segregatio 61.5 1.7E+02 0.0038 32.3 13.7 8 280-287 827-834 (895)
337 PF11365 DUF3166: Protein of u 61.4 39 0.00084 28.8 6.9 42 142-183 4-45 (96)
338 PF10226 DUF2216: Uncharacteri 61.3 1.5E+02 0.0034 28.3 13.6 19 117-135 22-40 (195)
339 PF05557 MAD: Mitotic checkpoi 61.3 6.9 0.00015 42.3 3.0 23 188-210 559-581 (722)
340 PF07716 bZIP_2: Basic region 61.2 18 0.00038 26.7 4.4 26 162-187 27-52 (54)
341 PF01166 TSC22: TSC-22/dip/bun 61.2 14 0.00031 29.0 4.0 21 140-160 22-42 (59)
342 KOG4196 bZIP transcription fac 61.0 1.3E+02 0.0028 27.3 13.2 67 142-218 50-116 (135)
343 PF05700 BCAS2: Breast carcino 60.9 50 0.0011 30.9 8.3 25 162-186 177-201 (221)
344 KOG3335 Predicted coiled-coil 60.8 12 0.00027 35.1 4.2 45 116-166 89-133 (181)
345 PF08826 DMPK_coil: DMPK coile 60.7 80 0.0017 24.8 9.3 33 151-183 23-55 (61)
346 KOG4797 Transcriptional regula 60.6 20 0.00043 31.6 5.1 29 153-181 67-95 (123)
347 PRK00409 recombination and DNA 60.4 90 0.002 34.8 11.3 41 140-180 521-561 (782)
348 PF02050 FliJ: Flagellar FliJ 60.4 80 0.0017 24.7 11.0 29 139-167 52-80 (123)
349 PRK02793 phi X174 lysis protei 60.2 50 0.0011 26.2 7.0 23 143-165 5-27 (72)
350 TIGR00414 serS seryl-tRNA synt 60.1 1.4E+02 0.0031 30.6 12.1 11 117-127 11-21 (418)
351 COG2919 Septum formation initi 60.1 1.1E+02 0.0024 26.1 12.3 65 119-189 22-86 (117)
352 TIGR00606 rad50 rad50. This fa 60.1 1.6E+02 0.0035 34.5 13.6 48 139-186 881-928 (1311)
353 PF05852 DUF848: Gammaherpesvi 60.0 78 0.0017 28.8 9.0 42 142-183 57-98 (146)
354 PF06810 Phage_GP20: Phage min 60.0 69 0.0015 28.8 8.6 7 238-244 133-139 (155)
355 TIGR02231 conserved hypothetic 59.9 1.3E+02 0.0028 31.3 11.8 12 198-209 155-166 (525)
356 KOG2264 Exostosin EXT1L [Signa 59.9 47 0.001 36.7 8.8 45 140-184 94-138 (907)
357 PF10481 CENP-F_N: Cenp-F N-te 59.8 92 0.002 31.5 10.1 54 150-210 78-131 (307)
358 PRK10361 DNA recombination pro 59.8 1.8E+02 0.004 31.0 12.9 11 199-209 144-154 (475)
359 PF09763 Sec3_C: Exocyst compl 59.6 1.8E+02 0.0039 31.5 13.2 70 138-207 22-94 (701)
360 PF09744 Jnk-SapK_ap_N: JNK_SA 59.4 1.4E+02 0.0031 27.2 10.8 23 163-185 92-114 (158)
361 PF08826 DMPK_coil: DMPK coile 59.2 86 0.0019 24.6 8.4 14 196-209 47-60 (61)
362 PF13815 Dzip-like_N: Iguana/D 59.2 50 0.0011 28.0 7.3 24 116-139 28-51 (118)
363 PLN02320 seryl-tRNA synthetase 59.0 1.1E+02 0.0023 32.8 11.2 50 113-165 65-119 (502)
364 KOG0243 Kinesin-like protein [ 58.8 1.5E+02 0.0032 34.7 12.7 88 123-210 415-512 (1041)
365 PRK12705 hypothetical protein; 58.8 1.7E+02 0.0037 31.4 12.6 23 261-289 217-239 (508)
366 PF12128 DUF3584: Protein of u 58.8 1.2E+02 0.0025 35.4 12.2 23 118-140 785-807 (1201)
367 PF01920 Prefoldin_2: Prefoldi 58.7 33 0.00071 27.3 5.8 26 141-166 64-89 (106)
368 PRK06800 fliH flagellar assemb 58.7 57 0.0012 31.3 8.2 38 142-179 41-78 (228)
369 PF12761 End3: Actin cytoskele 58.4 1.1E+02 0.0024 29.2 10.0 31 178-208 164-194 (195)
370 KOG0933 Structural maintenance 58.4 2.2E+02 0.0048 33.4 13.9 38 149-186 818-855 (1174)
371 KOG2077 JNK/SAPK-associated pr 58.3 35 0.00077 37.5 7.5 52 142-193 325-376 (832)
372 KOG0288 WD40 repeat protein Ti 58.2 1.4E+02 0.003 31.8 11.5 35 147-181 35-69 (459)
373 KOG4673 Transcription factor T 58.1 80 0.0017 35.6 10.2 86 124-209 362-467 (961)
374 PF07246 Phlebovirus_NSM: Phle 58.0 75 0.0016 31.5 9.2 61 148-209 177-237 (264)
375 PF02388 FemAB: FemAB family; 58.0 43 0.00092 34.0 7.8 25 139-163 242-266 (406)
376 KOG2189 Vacuolar H+-ATPase V0 58.0 58 0.0013 36.8 9.3 23 135-157 52-74 (829)
377 PF04977 DivIC: Septum formati 58.0 28 0.0006 26.4 5.1 27 139-165 24-50 (80)
378 TIGR02132 phaR_Bmeg polyhydrox 58.0 70 0.0015 30.4 8.5 51 139-189 79-129 (189)
379 KOG0978 E3 ubiquitin ligase in 58.0 1.6E+02 0.0034 33.0 12.5 11 199-209 605-615 (698)
380 PF06419 COG6: Conserved oligo 57.4 99 0.0021 33.4 10.8 63 136-198 42-104 (618)
381 KOG3647 Predicted coiled-coil 57.4 1.4E+02 0.0031 30.2 11.0 49 165-213 138-186 (338)
382 PF03962 Mnd1: Mnd1 family; I 57.3 1.6E+02 0.0035 27.2 13.3 25 141-165 71-95 (188)
383 PRK11546 zraP zinc resistance 57.2 92 0.002 28.2 8.9 18 197-215 91-108 (143)
384 PRK04778 septation ring format 57.2 1.2E+02 0.0025 32.4 11.1 70 157-235 380-449 (569)
385 PF10482 CtIP_N: Tumour-suppre 57.0 1.4E+02 0.0031 26.5 10.5 48 140-187 15-62 (120)
386 PRK14127 cell division protein 57.0 26 0.00056 30.3 5.2 49 141-189 39-100 (109)
387 PF05701 WEMBL: Weak chloropla 56.9 90 0.002 33.0 10.2 62 148-209 290-351 (522)
388 PF07558 Shugoshin_N: Shugoshi 56.9 12 0.00026 27.5 2.7 40 122-162 5-44 (46)
389 TIGR02680 conserved hypothetic 56.5 1.7E+02 0.0038 34.6 13.2 61 128-189 266-326 (1353)
390 PF04859 DUF641: Plant protein 56.5 41 0.00089 30.0 6.5 40 143-182 91-130 (131)
391 PF14988 DUF4515: Domain of un 56.3 95 0.0021 29.2 9.3 70 127-196 129-206 (206)
392 KOG0982 Centrosomal protein Nu 56.1 2.8E+02 0.0061 29.8 13.3 29 138-166 303-331 (502)
393 PRK00409 recombination and DNA 56.1 1.5E+02 0.0033 33.0 12.2 9 244-252 637-645 (782)
394 PF12709 Kinetocho_Slk19: Cent 55.9 72 0.0016 26.8 7.5 50 138-187 26-76 (87)
395 KOG0804 Cytoplasmic Zn-finger 55.9 99 0.0021 33.1 10.1 46 138-183 353-398 (493)
396 PF15058 Speriolin_N: Sperioli 55.9 23 0.00051 33.7 5.1 34 142-183 8-41 (200)
397 KOG0979 Structural maintenance 55.8 1.9E+02 0.004 33.9 12.8 45 118-162 181-225 (1072)
398 PF10779 XhlA: Haemolysin XhlA 55.8 57 0.0012 25.4 6.6 45 143-187 3-47 (71)
399 PF04880 NUDE_C: NUDE protein, 55.8 21 0.00045 33.0 4.7 20 198-217 34-53 (166)
400 KOG0612 Rho-associated, coiled 55.8 3.6E+02 0.0077 32.4 15.1 26 161-186 502-527 (1317)
401 PF10205 KLRAQ: Predicted coil 55.8 73 0.0016 27.5 7.7 34 150-183 30-63 (102)
402 PF05483 SCP-1: Synaptonemal c 55.7 2.3E+02 0.005 32.0 13.1 77 134-210 603-683 (786)
403 PHA03011 hypothetical protein; 55.6 62 0.0013 28.4 7.2 56 148-210 59-114 (120)
404 PRK04778 septation ring format 55.5 1.1E+02 0.0023 32.6 10.6 26 143-168 314-339 (569)
405 KOG0999 Microtubule-associated 55.0 1E+02 0.0022 34.0 10.2 66 145-219 7-79 (772)
406 TIGR01069 mutS2 MutS2 family p 54.7 1.8E+02 0.0038 32.6 12.4 35 141-175 517-551 (771)
407 PF08537 NBP1: Fungal Nap bind 54.7 91 0.002 31.8 9.3 71 117-187 121-202 (323)
408 PF04012 PspA_IM30: PspA/IM30 54.7 1.7E+02 0.0037 26.7 13.4 38 127-164 39-76 (221)
409 PF07851 TMPIT: TMPIT-like pro 54.6 1.3E+02 0.0028 30.7 10.5 71 140-210 5-83 (330)
410 PRK04325 hypothetical protein; 54.6 63 0.0014 25.8 6.7 24 142-165 5-28 (74)
411 TIGR03007 pepcterm_ChnLen poly 54.6 2.5E+02 0.0055 28.6 13.7 20 185-204 359-378 (498)
412 PF12999 PRKCSH-like: Glucosid 54.1 1E+02 0.0022 28.9 8.9 31 135-165 142-172 (176)
413 PF15254 CCDC14: Coiled-coil d 54.1 2.3E+02 0.0051 32.3 13.0 43 163-205 458-504 (861)
414 PHA03155 hypothetical protein; 54.0 17 0.00036 32.0 3.6 22 141-162 10-31 (115)
415 PRK00295 hypothetical protein; 54.0 67 0.0015 25.3 6.7 22 144-165 3-24 (68)
416 COG1842 PspA Phage shock prote 53.5 1.1E+02 0.0023 29.4 9.3 64 138-201 91-154 (225)
417 PF06008 Laminin_I: Laminin Do 53.3 1.4E+02 0.0031 28.3 10.0 46 141-186 47-92 (264)
418 PF05622 HOOK: HOOK protein; 53.3 4.4 9.6E-05 43.7 0.0 60 128-187 314-376 (713)
419 COG1792 MreC Cell shape-determ 53.2 68 0.0015 31.4 8.1 38 169-210 68-105 (284)
420 KOG1103 Predicted coiled-coil 53.2 1.3E+02 0.0028 31.6 10.3 46 134-179 127-172 (561)
421 PF04949 Transcrip_act: Transc 53.2 1.9E+02 0.0042 26.8 11.6 93 117-209 43-147 (159)
422 cd07596 BAR_SNX The Bin/Amphip 52.9 1.6E+02 0.0034 25.8 13.1 79 124-205 116-203 (218)
423 PF04340 DUF484: Protein of un 52.9 99 0.0022 28.6 8.8 44 140-187 41-84 (225)
424 PF12808 Mto2_bdg: Micro-tubul 52.7 40 0.00086 25.8 5.0 23 143-165 26-48 (52)
425 PF09325 Vps5: Vps5 C terminal 52.7 1.8E+02 0.0039 26.3 11.9 66 119-187 122-201 (236)
426 PF10212 TTKRSYEDQ: Predicted 52.6 73 0.0016 34.4 8.7 7 202-208 508-514 (518)
427 PHA03011 hypothetical protein; 52.6 77 0.0017 27.8 7.3 18 167-184 99-116 (120)
428 TIGR00998 8a0101 efflux pump m 52.5 93 0.002 29.6 8.7 30 142-171 97-126 (334)
429 PTZ00454 26S protease regulato 52.4 55 0.0012 33.4 7.6 49 147-209 16-64 (398)
430 PRK00846 hypothetical protein; 52.3 79 0.0017 25.9 7.0 24 142-165 9-32 (77)
431 PF14645 Chibby: Chibby family 52.2 57 0.0012 28.2 6.6 21 166-186 77-97 (116)
432 PF06698 DUF1192: Protein of u 52.2 50 0.0011 25.8 5.6 27 141-167 23-49 (59)
433 TIGR01005 eps_transp_fam exopo 51.9 3.4E+02 0.0073 29.5 13.7 17 194-210 375-391 (754)
434 PRK11147 ABC transporter ATPas 51.7 44 0.00095 35.6 7.0 47 141-187 570-622 (635)
435 PF12507 HCMV_UL139: Human Cyt 51.7 31 0.00066 30.7 4.9 64 143-206 34-97 (121)
436 PF05008 V-SNARE: Vesicle tran 51.6 56 0.0012 25.2 6.0 48 136-183 22-70 (79)
437 PF05812 Herpes_BLRF2: Herpesv 51.5 20 0.00044 31.6 3.8 24 140-163 4-27 (118)
438 KOG4460 Nuclear pore complex, 51.3 2.3E+02 0.005 31.4 12.1 46 137-182 600-645 (741)
439 PF10168 Nup88: Nuclear pore c 51.3 3E+02 0.0064 30.7 13.3 42 143-184 562-603 (717)
440 PF04340 DUF484: Protein of un 51.2 48 0.001 30.7 6.4 39 161-199 41-79 (225)
441 PF00261 Tropomyosin: Tropomyo 51.1 2.2E+02 0.0047 26.8 13.9 15 196-210 205-219 (237)
442 PF06008 Laminin_I: Laminin Do 51.1 1.5E+02 0.0032 28.2 9.8 46 141-186 54-99 (264)
443 KOG2129 Uncharacterized conser 51.0 2.3E+02 0.0049 30.5 11.7 87 119-208 162-266 (552)
444 PRK12705 hypothetical protein; 51.0 3.5E+02 0.0075 29.1 14.9 43 142-184 91-133 (508)
445 TIGR01005 eps_transp_fam exopo 50.7 99 0.0021 33.5 9.6 11 114-124 163-173 (754)
446 KOG0244 Kinesin-like protein [ 50.7 76 0.0016 36.4 8.8 72 139-210 509-594 (913)
447 TIGR02680 conserved hypothetic 50.6 3E+02 0.0064 32.7 13.9 41 128-168 871-911 (1353)
448 PF05812 Herpes_BLRF2: Herpesv 50.4 25 0.00054 31.0 4.1 26 162-187 5-30 (118)
449 KOG2991 Splicing regulator [RN 50.3 1E+02 0.0022 31.1 8.7 69 142-210 213-300 (330)
450 PF12795 MscS_porin: Mechanose 50.2 2.2E+02 0.0048 26.7 11.4 15 151-165 155-169 (240)
451 KOG0976 Rho/Rac1-interacting s 50.2 1.1E+02 0.0025 35.1 9.9 58 138-195 105-162 (1265)
452 cd00632 Prefoldin_beta Prefold 50.2 66 0.0014 26.5 6.5 27 142-168 66-92 (105)
453 PF10205 KLRAQ: Predicted coil 50.2 1.7E+02 0.0037 25.3 9.2 40 144-183 17-56 (102)
454 TIGR02209 ftsL_broad cell divi 50.2 69 0.0015 24.9 6.3 29 137-165 29-57 (85)
455 PRK00736 hypothetical protein; 49.4 88 0.0019 24.6 6.7 18 144-161 3-20 (68)
456 COG5570 Uncharacterized small 49.4 40 0.00086 26.3 4.6 11 199-209 44-54 (57)
457 COG4467 Regulator of replicati 49.3 75 0.0016 28.0 6.8 44 143-186 5-48 (114)
458 PRK09841 cryptic autophosphory 49.1 3.3E+02 0.0071 29.9 13.2 15 197-211 372-386 (726)
459 PF14661 HAUS6_N: HAUS augmin- 49.1 2.1E+02 0.0045 27.2 10.4 37 137-173 166-205 (247)
460 KOG4673 Transcription factor T 49.1 3E+02 0.0064 31.4 12.7 33 134-166 404-436 (961)
461 KOG2483 Upstream transcription 49.0 40 0.00088 32.6 5.7 53 135-210 101-153 (232)
462 KOG0709 CREB/ATF family transc 49.0 32 0.00069 36.5 5.3 46 132-187 254-299 (472)
463 PF06160 EzrA: Septation ring 48.9 1.7E+02 0.0037 31.2 10.8 71 157-236 376-446 (560)
464 KOG4657 Uncharacterized conser 48.8 2.5E+02 0.0055 27.7 10.9 74 131-208 40-113 (246)
465 PRK14160 heat shock protein Gr 48.8 70 0.0015 30.6 7.2 45 141-185 56-100 (211)
466 PHA03162 hypothetical protein; 48.7 22 0.00048 32.0 3.6 26 137-162 11-36 (135)
467 PF09730 BicD: Microtubule-ass 48.5 1.8E+02 0.0038 32.7 11.1 14 197-210 106-119 (717)
468 PHA03155 hypothetical protein; 48.1 24 0.00051 31.1 3.6 24 162-185 10-33 (115)
469 PF06818 Fez1: Fez1; InterPro 48.0 1.6E+02 0.0035 28.2 9.4 12 199-210 91-102 (202)
470 TIGR03545 conserved hypothetic 48.0 1.1E+02 0.0024 33.0 9.2 48 139-186 191-238 (555)
471 PF01486 K-box: K-box region; 48.0 77 0.0017 25.9 6.5 24 160-183 75-98 (100)
472 KOG4593 Mitotic checkpoint pro 48.0 4.6E+02 0.0099 29.6 14.4 34 135-168 140-173 (716)
473 TIGR01010 BexC_CtrB_KpsE polys 47.8 2.8E+02 0.0062 27.2 12.5 29 140-168 171-199 (362)
474 KOG3850 Predicted membrane pro 47.7 3.7E+02 0.0081 28.5 20.4 38 173-210 323-368 (455)
475 PF04728 LPP: Lipoprotein leuc 47.6 96 0.0021 24.2 6.5 28 147-174 4-31 (56)
476 KOG0979 Structural maintenance 47.6 2.1E+02 0.0045 33.5 11.5 27 123-149 644-671 (1072)
477 KOG0018 Structural maintenance 47.5 1.8E+02 0.0039 34.2 11.1 63 125-187 388-450 (1141)
478 PF05300 DUF737: Protein of un 47.5 72 0.0016 30.0 6.9 47 123-169 118-164 (187)
479 KOG0289 mRNA splicing factor [ 47.4 42 0.00092 35.7 5.9 51 158-210 69-128 (506)
480 PF10174 Cast: RIM-binding pro 47.4 4E+02 0.0086 30.2 13.6 62 141-209 289-350 (775)
481 PRK10636 putative ABC transpor 47.4 1.3E+02 0.0027 32.4 9.6 29 141-169 558-586 (638)
482 PF11500 Cut12: Spindle pole b 47.3 1.6E+02 0.0034 27.1 8.8 52 117-168 83-134 (152)
483 PHA03162 hypothetical protein; 47.2 14 0.00031 33.2 2.2 23 162-184 15-37 (135)
484 PF07111 HCR: Alpha helical co 47.2 3.2E+02 0.007 30.8 12.7 97 116-218 300-396 (739)
485 PF09486 HrpB7: Bacterial type 47.0 1.7E+02 0.0037 26.8 9.1 17 194-210 120-136 (158)
486 COG1792 MreC Cell shape-determ 47.0 62 0.0013 31.7 6.7 49 133-185 60-108 (284)
487 PF06210 DUF1003: Protein of u 46.9 1.1E+02 0.0024 26.2 7.5 49 126-179 58-106 (108)
488 PF10498 IFT57: Intra-flagella 46.9 3.4E+02 0.0073 27.8 13.0 90 118-209 226-315 (359)
489 PF14932 HAUS-augmin3: HAUS au 46.7 1.9E+02 0.0042 27.7 9.9 69 139-207 68-140 (256)
490 PF09311 Rab5-bind: Rabaptin-l 46.6 11 0.00023 34.4 1.4 63 148-210 10-72 (181)
491 cd00179 SynN Syntaxin N-termin 46.5 1.8E+02 0.0039 24.6 11.1 78 139-218 20-109 (151)
492 smart00340 HALZ homeobox assoc 46.3 34 0.00074 25.5 3.7 25 163-187 8-32 (44)
493 PHA02557 22 prohead core prote 46.2 76 0.0017 31.6 7.2 56 155-210 143-198 (271)
494 KOG2991 Splicing regulator [RN 46.1 1.6E+02 0.0034 29.8 9.3 75 145-221 235-309 (330)
495 KOG0249 LAR-interacting protei 46.1 1.3E+02 0.0029 34.1 9.6 76 130-207 207-282 (916)
496 PRK12704 phosphodiesterase; Pr 46.0 4E+02 0.0087 28.5 13.6 91 119-209 52-142 (520)
497 PF10769 DUF2594: Protein of u 45.9 99 0.0022 25.4 6.6 63 141-215 12-74 (74)
498 PTZ00454 26S protease regulato 45.9 76 0.0016 32.4 7.4 48 141-188 17-64 (398)
499 PF04899 MbeD_MobD: MbeD/MobD 45.7 1.2E+02 0.0027 24.3 7.1 48 142-189 17-64 (70)
500 PF13815 Dzip-like_N: Iguana/D 45.5 86 0.0019 26.6 6.6 45 133-177 74-118 (118)
No 1
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.54 E-value=1.3e-13 Score=130.59 Aligned_cols=97 Identities=25% Similarity=0.303 Sum_probs=86.5
Q ss_pred ccccccccccccCCC-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 100 TAAVNTRWTRNAEHS-MDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRS 178 (351)
Q Consensus 100 ~ag~~~r~~~~~d~~-~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~e 178 (351)
.++.+.|++++.+.. -++|-.||+|+||++||-+|.|||+.++++|..|+.|+.||..|..+...|++.++.|..+|.+
T Consensus 50 aas~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~e 129 (292)
T KOG4005|consen 50 AASQPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHE 129 (292)
T ss_pred cccchHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345556777777764 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 179 LSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 179 LKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
|..+| |.|.+|+..|++.
T Consensus 130 l~~~l--------------e~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 130 LDSEL--------------ELLRQELAELKQQ 147 (292)
T ss_pred HHHHH--------------HHHHHHHHhhHHH
Confidence 99998 6677778788877
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.43 E-value=9.6e-13 Score=99.95 Aligned_cols=62 Identities=34% Similarity=0.408 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 115 MDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQ 176 (351)
Q Consensus 115 ~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN 176 (351)
.|+|+.||+++||+||++||.||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999988887777776554
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.32 E-value=1.2e-11 Score=93.82 Aligned_cols=61 Identities=34% Similarity=0.488 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQ 176 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN 176 (351)
+.|+.+|+++||+||++||.||+.|+++||.+|..|+.+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999999999999999999999999999888888776
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.07 E-value=6.3e-10 Score=82.42 Aligned_cols=53 Identities=30% Similarity=0.395 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 115 MDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 115 ~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
.|+++.||. +||+||++||.||+.|+.+||.+|..|+.+|..|..++..|+.+
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367888898 99999999999999999999999999999999999998887653
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.06 E-value=2.3e-10 Score=117.91 Aligned_cols=64 Identities=31% Similarity=0.346 Sum_probs=60.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
||..|||+||+||..||+|||+|+.-||.+++.|..||..|+++.+.|+++...|..||+.||-
T Consensus 281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 6777999999999999999999999999999999999999999999999999999999998864
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.99 E-value=5.1e-10 Score=113.74 Aligned_cols=66 Identities=30% Similarity=0.329 Sum_probs=58.4
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
..||+||+|||.+|||.||+|||.||+.||.+|....+||.+|..+|..|+.+|..|-.+.+.|..
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999998888777777666554433
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.89 E-value=2.1e-09 Score=104.47 Aligned_cols=52 Identities=35% Similarity=0.427 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
..||.-|++||||+|+.+|+|||+||..||.+|..|+.+|..|-++|..|..
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 3588889999999999999999999999999999999999999888877654
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.12 E-value=6.8e-06 Score=79.30 Aligned_cols=52 Identities=31% Similarity=0.344 Sum_probs=45.2
Q ss_pred HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 117 PKRLRR-IESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 117 pKR~KR-iLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
.+|+.| .++||++|.+||+||+++|.+||.+|+.|..+|..|...+..|.+.
T Consensus 204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~ 256 (279)
T KOG0837|consen 204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ 256 (279)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 455555 6899999999999999999999999999999999998887766554
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.05 E-value=4.9e-08 Score=79.42 Aligned_cols=52 Identities=31% Similarity=0.408 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+.|.+||.++||.+|++||.||+.++.+||.++..|..+...|..++..+..
T Consensus 28 ~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~ 79 (92)
T PF03131_consen 28 ELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQ 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999998877776666655544443
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.55 E-value=0.00089 Score=65.69 Aligned_cols=55 Identities=27% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCCCHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 113 HSMDPKRLRRI-ESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 113 ~~~DpKR~KRi-LkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
...++|+.||+ ..|..+|.|.|+||++-.+.|+.+++.|+.+|.+|+.++..|.+
T Consensus 221 ~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 221 YKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567887775 45556699999999999999999988887777777766654433
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.40 E-value=0.008 Score=57.85 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 115 MDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQ 169 (351)
Q Consensus 115 ~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~ 169 (351)
.|++=.-|.-+|=++|+|||.+.|+-..+...+|..|+.||..|+.+|..|+.+.
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666889999999999999888888888888777777776665544433
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.36 E-value=0.0016 Score=57.54 Aligned_cols=47 Identities=34% Similarity=0.394 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv 162 (351)
-.|..||-|+||=.|+-+|-|+.+.-.+||.+...|..+...|..++
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~ 97 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEEN 97 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999988888877766555554444433
No 13
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.45 E-value=0.014 Score=49.63 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
..|.+||.++..|-.+...|+.++..|..+|..|..||..|+.+|..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999988876
No 14
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.44 E-value=0.16 Score=44.11 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=68.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHH
Q 038341 119 RLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIA 198 (351)
Q Consensus 119 R~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E 198 (351)
-..+++.-=.+=-.+|.|-..+-+.|+.++..+..++..|...+..|..+...+..+...++.+...+..+..-......
T Consensus 32 ~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544455556667777777788888888888877777777777777777777777777777777766666666677
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQLHLYQQQ 216 (351)
Q Consensus 199 ~Lk~EVqRLR~a~i~qQq 216 (351)
.+++|+++|+.. .+|.
T Consensus 112 ~~kee~~klk~~--~~~~ 127 (151)
T PF11559_consen 112 QEKEELQKLKNQ--LQQR 127 (151)
T ss_pred HHHHHHHHHHHH--HHHH
Confidence 888889888876 4444
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.41 E-value=0.0064 Score=64.69 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=49.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 120 LRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 120 ~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
+||.=+||.|||++|+||+.-|..||..|..|+.|-.+|.. +...+..+..++|++|..|-++
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~-------Er~~~d~~L~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLR-------ERDELDSTLGVMKQQLSELYQE 554 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566899999999999999999999999988877766543 3455666677788888777543
No 16
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.37 E-value=0.015 Score=49.94 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
.+..||.++..+..+...|+.++..|..+|..|..||..|+.+|..+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999999999999998754
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.29 E-value=0.063 Score=42.88 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
+-++.||.+|+.+-..+..|..++..|+.++..|..+|.+|+...+.|.+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34688999988888888888888888888877777777777777766653
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.46 E-value=0.17 Score=40.14 Aligned_cols=60 Identities=25% Similarity=0.263 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
.||..|..|+..+..+..++...+..+..|..|+...-.+|...- ..+..|+.|++.|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~-------~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAY-------EENNKLKEENEALRK 61 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777777666655554433 334555555555554
No 19
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.20 E-value=0.76 Score=44.33 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=76.2
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhh
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQ---------NMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq---------~q~~~L~~EN~eLKqrLqsL 186 (351)
-+|-++++..-.+.+.+.-.-+..-+++|+.+|..++.+...+++++..++ ++...|..|-..++.++.+|
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777888888888888899999999999999999999988875 55777888888888888888
Q ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHH
Q 038341 187 NNNIVFINAEIADNKAEVGRLRQLHLY 213 (351)
Q Consensus 187 eQq~~lkda~~E~Lk~EVqRLR~a~i~ 213 (351)
+.+..=-.-..+.|++++.-|+-.++-
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876655555566777777776666333
No 20
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.12 E-value=0.075 Score=46.05 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
-+.+||.++-+|-++...|+..+..+-.++..|..||..|+.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4788999999999999999999999999999999999999999987
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.80 E-value=0.24 Score=45.41 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=52.4
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEK---KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 139 qYIeELE~---kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.|+..|.. ..+.++.||..|..++..|+.++..|..|+..|++++..++.+ ++.|-.-+.|-|.+
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD-------Y~~L~~Im~RARkl 154 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED-------YQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 45555554 3777888999999999999999999999999999998877755 67888888888876
No 22
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.80 E-value=0.2 Score=39.71 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.++..|.+++...+.++..|..+-.....+....-.++.+||.++++|.
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888888874444
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.73 E-value=0.27 Score=46.05 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 152 ENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 152 q~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..+.++|..+++........|..||++|+.+++.+.++. +.|+.|+++++.-
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~-------~~l~~~~~~~~~~ 168 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV-------DAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344555555566666666667777777777777665543 4444455444443
No 24
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=94.70 E-value=0.49 Score=46.23 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHhhHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 112 EHSMDPKRLRRIESNRVSA--QKSRMKKLQY-VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 112 d~~~DpKR~KRiLkNReSA--qRSR~RKKqY-IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
...++-||+|-..+-.-+- ++.|+-+.+| |.+|+.+-+.|+.||..|+++...|-.+++.|..+...|++.|..+.+
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 4456778888555433322 3455556666 678999999999999999999999999999999999999999988888
Q ss_pred chhhhhHHHH
Q 038341 189 NIVFINAEIA 198 (351)
Q Consensus 189 q~~lkda~~E 198 (351)
++++....+|
T Consensus 147 ~~~~~~~v~e 156 (292)
T KOG4005|consen 147 QQQHNTRVIE 156 (292)
T ss_pred HHHHhhHHHh
Confidence 7776554443
No 25
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=94.67 E-value=0.16 Score=41.56 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
++|..++..|+.....|..++..++.++..|..||+-|..+|..|...
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999999999999999999888644
No 26
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=94.35 E-value=1.4 Score=40.98 Aligned_cols=94 Identities=21% Similarity=0.204 Sum_probs=54.9
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINA 195 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda 195 (351)
|-+-++..|....+-+..+.+.+.+...||.++..-..+..++..++..|++....|..+...++...++...+..-..+
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888889999999999999999999887755555555555555554444444433333333222211111112
Q ss_pred HHHHHHHHHHHHHH
Q 038341 196 EIADNKAEVGRLRQ 209 (351)
Q Consensus 196 ~~E~Lk~EVqRLR~ 209 (351)
..+.+++++...+.
T Consensus 167 ~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 167 EAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 23455555555444
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.11 E-value=0.76 Score=45.29 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.+++.+++.|+.|..+|..++..|+.+...|..|...|+.+++.+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444333
No 28
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.98 E-value=0.65 Score=36.79 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
..||.||..|=.....|+.+...|..+...+..|+..|+.+.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444444444455555555554444
No 29
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.94 E-value=2.3 Score=38.00 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=61.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 120 LRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 120 ~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
+.....|++.|-+--.-+++.+..|+.++..+..+...|...+..+..+...|..+-+..+.+|..|+...
T Consensus 33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455788888888899999999999999999999999999999999999999999999999998887443
No 30
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.83 E-value=1 Score=39.27 Aligned_cols=46 Identities=26% Similarity=0.405 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 170 EFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQL 217 (351)
Q Consensus 170 ~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq 217 (351)
..|..+-.+|..|.+++-+--==|.-..|.|+..|.-||.. |++|-
T Consensus 71 ~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m--yr~Qi 116 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM--YREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH--HHHHH
Confidence 33444444444444443322222344578999999999998 88873
No 31
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.47 Score=51.17 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
-+..|+.+|+.|+.||..|...+..++++...|..+...++.++
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777666666655555444
No 32
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.69 E-value=0.9 Score=42.76 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFI 193 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lk 193 (351)
-|++|+..-+.|..||..|...+..+...+..|..|+..|+.++.++.|-...-
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999886544443
No 33
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=93.63 E-value=0.36 Score=37.79 Aligned_cols=49 Identities=29% Similarity=0.318 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
..|.+||.++..++.-+.+|...|..-+++...|..+.+.|..||.++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999999888888887776
No 34
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.59 E-value=2.3 Score=39.41 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 131 QKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 131 qRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
.......+..+++++.++..|+.++..+..++...+++...+..++...+..+.
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666777777777777777777777777766666666666666555
No 35
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.55 E-value=2 Score=39.14 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
....-|.+++.-++.|+.|...|..++..++.....|..||.+|-+|.
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444455544444443
No 36
>PRK02793 phi X174 lysis protein; Provisional
Probab=93.27 E-value=0.55 Score=37.30 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+.|.+||.++...+.-+.+|...|..-+++...|..+-+.|+.||..++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678888888888888888888888887777777777777776665554
No 37
>PRK00295 hypothetical protein; Provisional
Probab=93.24 E-value=0.58 Score=36.78 Aligned_cols=48 Identities=25% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.|.+||.++...+.-+.+|...|..-+++...|..+.+.|..||..++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999998888888888877777777776554
No 38
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.20 E-value=3.6 Score=41.24 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh----------------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 165 YQNMQEFLQKEQRSLSERMTTYN----------------NNIVFINAEIADNKAEVGRLRQLHLYQQQLKM 219 (351)
Q Consensus 165 Lq~q~~~L~~EN~eLKqrLqsLe----------------Qq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~~ 219 (351)
|..+...|..|++.|..+|+.-- ....-..+++..|+.||.|||..++..|++..
T Consensus 183 L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~ 253 (310)
T PF09755_consen 183 LWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHS 253 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888899999998887411 11233445567999999999999777666543
No 39
>PRK11637 AmiB activator; Provisional
Probab=93.14 E-value=1.7 Score=43.85 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.+.+++.++..++.+...+..++..++++...+..+...|..+|
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333333333333333333333333
No 40
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.12 E-value=3.5 Score=35.85 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=36.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 121 RRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 121 KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
.|=...|+.......++..=++.|+..+..|+.++..+..++..++.....|..+.+.+...+.
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666666666666666666666655555555555444444433
No 41
>PRK00736 hypothetical protein; Provisional
Probab=93.12 E-value=0.62 Score=36.64 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.+|.+||.++...+.-+.+|...|..-+++...|..+.+.|..||..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348999999999999988888888888777777777766666666544
No 42
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.08 E-value=0.64 Score=36.84 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.|+.|=..++.|+.||..|+.++..+..+...|...|..-+.||++|
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888665
No 43
>PRK04325 hypothetical protein; Provisional
Probab=93.06 E-value=0.61 Score=37.23 Aligned_cols=48 Identities=29% Similarity=0.305 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.|.+||.++...+.-+.+|...|..-+++...|..+.+.|..||..++
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388999999999888888888888887777777777666666665543
No 44
>PRK02119 hypothetical protein; Provisional
Probab=92.98 E-value=0.64 Score=37.07 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
..|.+||.++...+.-+.+|...|..-+++...|..+.+.|+.||..+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888887777777777777777766666666666665444
No 45
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.93 E-value=4.2 Score=40.55 Aligned_cols=93 Identities=13% Similarity=0.180 Sum_probs=45.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEK--------------KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~--------------kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.++.-|..+-+--.+-|.-|+=.++-||. ++..|+.||..|.+....|++....|.-+...=..++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 34444444444444555555555555554 3444444444444444444444444444433333344
Q ss_pred hhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 184 TTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 184 qsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..|+.+..-....+|.|..||.|+|.-
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333333566777777777765
No 46
>PRK04406 hypothetical protein; Provisional
Probab=92.91 E-value=0.65 Score=37.30 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
..|.+||.++...+.-+.+|...|..-+++...|..+.+.|+.||.++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777777777777777777777777666666666666665555444
No 47
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.89 E-value=1.2 Score=36.62 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.-++.||.||+..-..+.-|.-+|..|..++..|..|+..++..-..|
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L 51 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 346788888887777776677666666666666666666555444333
No 48
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=92.82 E-value=1.8 Score=41.91 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
=.+|.+..++....++..-..-+.+......+...|..||..|+.++ +.|++|+..||.+
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v--------------~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQV--------------EQLKKELATLRRL 251 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 35566666666555554444444444555555666666777776665 7888889999988
No 49
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.70 E-value=0.71 Score=36.92 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLS 180 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLK 180 (351)
+..|+.|+.+|+.+...|..++..|..||..|+
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 50
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=1.7 Score=35.50 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
-++.||.||++.-.-+.-|.-++..|...+..|..|-+.+....++|
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 35666666665544444444444444444444444444444444333
No 51
>PRK11637 AmiB activator; Provisional
Probab=92.66 E-value=2.7 Score=42.36 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 130 AQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 130 AqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.++....-...+..|+.++..++.+...+..++..++.+...|..+...++.+|+...
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444456666777777777777777777777776666666666666666665544
No 52
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=92.51 E-value=0.0074 Score=60.77 Aligned_cols=56 Identities=30% Similarity=0.331 Sum_probs=45.3
Q ss_pred ccCCCCCHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 038341 110 NAEHSMDPKRLRRIESNRVSAQK---SRMKKLQYVTDLEKKAKALE-NQIAMLTPQVSLY 165 (351)
Q Consensus 110 ~~d~~~DpKR~KRiLkNReSAqR---SR~RKKqYIeELE~kVq~Lq-~ENs~Ls~qv~~L 165 (351)
....+.+.||..|..+|+.+|.+ +|.||+.+..+|..+|+.|+ .++..|..++..|
T Consensus 146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~L 205 (395)
T KOG1414|consen 146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPL 205 (395)
T ss_pred CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccc
Confidence 34566788999999999999999 99999999999999999888 6555544444333
No 53
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=92.49 E-value=1.5 Score=36.56 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 151 LENQIAMLTPQVSLYQN------MQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~Lq~------q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+..++..|..++..|+. +.....+||..|+.++..|..-. -...-|.+..||..||..
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 33444444444444443 35667788888888777765433 344567888888888754
No 54
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.43 E-value=1.2 Score=35.75 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQE--------FLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~--------~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+.+.|..+..|+.||=.|.-++-+|.+... .+..||-+||..+ +.|++|+++++..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~--------------~~L~~el~~~~~~ 65 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEV--------------ESLKRELQEKKKL 65 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 457899999999999999999999987755 3456666666665 5566666666655
No 55
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.39 E-value=0.67 Score=48.66 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
.++||++++.|+.|...|+++...++++...|..||+.|+.+++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999888888888888888888888888888888773
No 56
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.31 E-value=1.9 Score=38.23 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhcc-hhhhhHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQV--SLYQNMQEFLQKEQRSLSERMTTYNNN-IVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv--~~Lq~q~~~L~~EN~eLKqrLqsLeQq-~~lkda~~E~Lk~EVqRLR~a 210 (351)
...+.+|+..++.|+.|...|.... ..|......|..|+..|..+|+.|... ..+.....+.+.++..+++..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666655 346777888999999999999988843 334455566666666666554
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.20 E-value=2.2 Score=40.29 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINA 195 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda 195 (351)
.-|+.++..|+.||..|..+...++.+...|.+++..|+.+|-.++.-.--+|+
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da 151 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDA 151 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888888888888888888555533333333
No 58
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=92.20 E-value=2.2 Score=35.19 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.+|+.+.+.+=+++-..|.-+..-..+||.+++.|...-+.|..++.....+...|..-|.+++.+|...
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888999999999999999999999999999999999999999999654
No 59
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.19 E-value=0.58 Score=42.59 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv 162 (351)
+|+..+..|+.++..|..++
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 60
>PRK09039 hypothetical protein; Validated
Probab=92.05 E-value=3.2 Score=41.42 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
|+.++..++.+.++...+|..|+++...|..+...|...|++.++.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555555433
No 61
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.99 E-value=1.5 Score=48.49 Aligned_cols=70 Identities=26% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHH---
Q 038341 141 VTDLEKKAKALENQIAMLTP---------------------QVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAE--- 196 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~---------------------qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~--- 196 (351)
|.++..++..+..||..|.. ++..|......+..||..||-.+..+.++.-||.-+
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556555444 233445555566666666666666666555555443
Q ss_pred ------------------HHHHHHHHHHHHHH
Q 038341 197 ------------------IADNKAEVGRLRQL 210 (351)
Q Consensus 197 ------------------~E~Lk~EVqRLR~a 210 (351)
+..|.+|.+|||.+
T Consensus 174 ~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 174 SRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23899999999998
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.89 E-value=2.3 Score=39.98 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
..+|..+++....++.+|..+...|.++...+..|+..|+.++
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333333333333333333333333333
No 63
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=91.77 E-value=0.12 Score=52.16 Aligned_cols=50 Identities=36% Similarity=0.474 Sum_probs=41.1
Q ss_pred ccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 110 NAEHSMDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLT 159 (351)
Q Consensus 110 ~~d~~~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls 159 (351)
..+...|+++.|=+.+||.+|-++|.|||..+..|+.+...+..++..|.
T Consensus 277 ~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 277 TVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred ccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 45555677885558899999999999999999999999988877776555
No 64
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.65 E-value=5.1 Score=38.33 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 130 AQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 130 AqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
+-.+=+..-.+|++++.+...|..|-....++|....++...|...-+.++...............++..|+.+|.++|.
T Consensus 23 e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 23 EVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455578899999999999999888888888888888888888888877777766666666788899999999988
Q ss_pred H
Q 038341 210 L 210 (351)
Q Consensus 210 a 210 (351)
-
T Consensus 103 e 103 (230)
T PF10146_consen 103 E 103 (230)
T ss_pred H
Confidence 6
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.27 E-value=1.2 Score=46.82 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLRQL 210 (351)
Q Consensus 197 ~E~Lk~EVqRLR~a 210 (351)
.+.|+.|+++|+..
T Consensus 118 ~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 118 IEQLKSERQQLQGL 131 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666555
No 66
>PRK00846 hypothetical protein; Provisional
Probab=91.07 E-value=1.4 Score=35.92 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
++|.+||.++...+.-+.+|...|...++....|..+.+.|+.||.+++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888888877777777777777776666666666666666555443
No 67
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.62 E-value=4.2 Score=43.81 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
+.|+..++.+.+.+......|..++.....++..|..+|.+||..|+.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 569999999999999999999999999999999999999999887753
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.56 E-value=4.1 Score=44.59 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
+-+..+.++|+.|...|+.++...+.+...|..|.++|+..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777777777777777666654
No 69
>PRK09039 hypothetical protein; Validated
Probab=90.45 E-value=4.3 Score=40.55 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+|..|+.++..|+.|+..++.....+..+..+.+.+|+.|
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.27 E-value=2.7 Score=44.23 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 038341 319 PENADMMT 326 (351)
Q Consensus 319 ~~~~~~~~ 326 (351)
|+|+++|-
T Consensus 239 P~NSTL~G 246 (472)
T TIGR03752 239 PENSTLMG 246 (472)
T ss_pred CCCCchhh
Confidence 44555443
No 71
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.27 E-value=10 Score=33.96 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALEN 153 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ 153 (351)
.+|..||+.+...+.
T Consensus 24 ~~v~~LEreLe~~q~ 38 (140)
T PF10473_consen 24 DHVESLERELEMSQE 38 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555444433
No 72
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=90.12 E-value=0.48 Score=43.44 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAE 196 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~ 196 (351)
++++|.|+..-=.+|.-|..+| .+...|..+++.||..+..|.++..+++.+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999998888888888888 557778888888888888888877666544
No 73
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.10 E-value=5.7 Score=43.55 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 129 SAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 129 SAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
..-++|++=|+-+..||+++...+..-..|.+|+...+
T Consensus 478 ~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 478 NLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777888887777777777777666654
No 74
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.08 E-value=1.3 Score=36.21 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
|.-|.-+|..|..+|..|..++..+++.+..|..||..||+.-
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777777777777777654
No 75
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.97 E-value=21 Score=36.70 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqR 206 (351)
.|.++..++++-+.|+..-+.|..-...|..+...|++++..|..+ ++.|++-++.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~n-------iDIL~~k~~e 278 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKN-------IDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHH
Confidence 3556666666666666666666666666666666666666665433 4666665544
No 76
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.94 E-value=6.2 Score=35.15 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.+|+.+..+++..+.++..++..++.....+..+.+..+.++.++.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 136 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLD 136 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333333444444444433
No 77
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.65 E-value=10 Score=35.64 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+.++..|+.|...|...+..+++....+..+..+|+.+++.+
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444444444433
No 78
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=89.52 E-value=3.6 Score=37.96 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHH--------HHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAE--------IADNKAEVGRLRQLH 211 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~--------~E~Lk~EVqRLR~a~ 211 (351)
.+++=..+...|...|+-|+.++......|..|..++..|+..+..+..+...++.. +..+..|..+|-.+
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~L- 146 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSL- 146 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHH-
Confidence 345556678888888999999999999999999999999998888877666555543 33455555555554
Q ss_pred HHHHHHH
Q 038341 212 LYQQQLK 218 (351)
Q Consensus 212 i~qQqq~ 218 (351)
++|...
T Consensus 147 -Wr~v~~ 152 (182)
T PF15035_consen 147 -WREVVA 152 (182)
T ss_pred -HHHHHH
Confidence 555543
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.40 E-value=18 Score=33.57 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
..+++..+..|+.+++.+..++...+.++..++.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 80
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.20 E-value=9.3 Score=41.05 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=29.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
.+++-.....+....-+..+++|+..+...+.++..|..+...+......|..|+..|
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555556655555555555555555544444444444444333
No 81
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.15 E-value=10 Score=37.99 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhhcchhhhh
Q 038341 171 FLQKEQRSLSERMTTYNNNIVFIN 194 (351)
Q Consensus 171 ~L~~EN~eLKqrLqsLeQq~~lkd 194 (351)
....|.++||+=|+.+.....-+|
T Consensus 121 EARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhh
Confidence 345677788888877764444333
No 82
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.13 E-value=8 Score=44.39 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 129 SAQKSRMKKLQYVTDLEKKA-KALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 129 SAqRSR~RKKqYIeELE~kV-q~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
..+++.++..+.|.+++.+. +.++.+..++..++..|..+...|...+..|+..++.+.++..-.....+.++.++..|
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l 448 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQL 448 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444455555554 44444445555555555555555555555555555554443333332333455555555
Q ss_pred HHHHHHHHHH----Hhh--hcCCCCCCCCchhhh---hc--CCCCCCCCCCCccccCCCCCCCCCCccHHHHH
Q 038341 208 RQLHLYQQQL----KML--EQNGLPVWDCGLDEL---MN--STWCPTPGPGQMVYANPNQGDPYNGESIEEIL 269 (351)
Q Consensus 208 R~a~i~qQqq----~~~--~~~a~~~~~~~~~~~---~~--s~f~~~~~p~q~~~~~~~q~~~~~~~~~~~~~ 269 (351)
+.. -++.+ ... .......|...+.++ |+ ..+|++|.-|-+ =.+=+=.||--.-.||+++
T Consensus 449 ~k~--i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPl-G~~Vtl~~~KWa~aIE~~L 518 (1074)
T KOG0250|consen 449 RKK--IENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPL-GKYVTLKEPKWALAIERCL 518 (1074)
T ss_pred HHH--HHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCc-cceeEecCcHHHHHHHHHH
Confidence 554 11111 000 112234566666666 43 334456544544 2222233443334566554
No 83
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.97 E-value=5 Score=42.23 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
++.|+.+++.|+.||.+|+..++.|...+..|..+.+.+-++|+++.
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 45566779999999999999999999888888888777766666654
No 84
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.84 E-value=4.4 Score=44.24 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhh---HHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFIN---AEIADNKAEVGRLRQ 209 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkd---a~~E~Lk~EVqRLR~ 209 (351)
+..|..++..|+.+...|..++..+.+.+.....++..+..+|+.++....-+. .+...|..+|+.||.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566666666666666666666666666666666666666666666654443333 333455555555544
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.81 E-value=4.9 Score=35.57 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=4.3
Q ss_pred HHHHHHhhhh
Q 038341 178 SLSERMTTYN 187 (351)
Q Consensus 178 eLKqrLqsLe 187 (351)
.|..||+.|+
T Consensus 77 ~l~rriq~LE 86 (143)
T PF12718_consen 77 QLNRRIQLLE 86 (143)
T ss_pred HHHhhHHHHH
Confidence 3444444444
No 86
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=88.78 E-value=15 Score=38.54 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch--------hhhh
Q 038341 128 VSAQKSRMKKLQYVTDLEKK-----AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI--------VFIN 194 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~k-----Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~--------~lkd 194 (351)
+-|-+-++.=++|++.||.. ++++..|...|..+-..|.++...|..++..|-..|..++..+ ..-+
T Consensus 153 ~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ 232 (447)
T KOG2751|consen 153 EDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWR 232 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888864 3445555555555555555555555555555544444443221 1111
Q ss_pred HHHH------HHHHHHHHHHHHHHHHHHHH
Q 038341 195 AEIA------DNKAEVGRLRQLHLYQQQLK 218 (351)
Q Consensus 195 a~~E------~Lk~EVqRLR~a~i~qQqq~ 218 (351)
-.+. ....|++.|...+-|.|.|.
T Consensus 233 ey~~~~~q~~~~~del~Sle~q~~~s~~ql 262 (447)
T KOG2751|consen 233 EYNNFQRQLIEHQDELDSLEAQIEYSQAQL 262 (447)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 1111 44566677777766776643
No 87
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.70 E-value=4.3 Score=39.86 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 038341 203 EVGRLRQLHLYQQQLKML 220 (351)
Q Consensus 203 EVqRLR~a~i~qQqq~~~ 220 (351)
||.+|+.. |+..+...
T Consensus 277 Ev~~Lk~~--~~~Le~~~ 292 (325)
T PF08317_consen 277 EVKRLKAK--VDALEKLT 292 (325)
T ss_pred HHHHHHHH--HHHHHHHH
Confidence 44455555 44444433
No 88
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=88.67 E-value=6.3 Score=37.77 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
||.+...+.++...|..++.....+...+..+..+|+.+.+.+ .-++.+|.+|-++|+..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~-------~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL-------QDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444 33467777777777654
No 89
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.64 E-value=5.1 Score=33.10 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
--+|..|+.+|..|..++..+......|..||..||+.
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444444444444444334444444444444443
No 90
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.62 E-value=4 Score=44.38 Aligned_cols=86 Identities=13% Similarity=0.286 Sum_probs=48.8
Q ss_pred HhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhcchhhhhHHHHHH
Q 038341 125 SNRVSAQKSRMKKL-QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQ---KEQRSLSERMTTYNNNIVFINAEIADN 200 (351)
Q Consensus 125 kNReSAqRSR~RKK-qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~---~EN~eLKqrLqsLeQq~~lkda~~E~L 200 (351)
.+|..+.+.+..++ ..+.+|+.++..|+.++..|..++..+.++...-. .|-+.+..+|..|+.+..-+.-..+.|
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443332 34555666666666666666666666555443222 233334456666766666666667788
Q ss_pred HHHHHHHHHH
Q 038341 201 KAEVGRLRQL 210 (351)
Q Consensus 201 k~EVqRLR~a 210 (351)
+.++.+||..
T Consensus 501 ~~~l~~l~k~ 510 (652)
T COG2433 501 ERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 91
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.48 E-value=7.9 Score=41.56 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 131 QKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 131 qRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
++.|..=++-...||.++..|+.++..|..++...++++..|..+++.+....+.+
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l 204 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEEL 204 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445555555555555555555554444444444444444444333
No 92
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.41 E-value=8.1 Score=41.85 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=40.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 125 SNRVSAQKSRMKKLQYVTDLEKKAKALENQ------------------------IAMLTPQVSLYQNMQEFLQKEQRSLS 180 (351)
Q Consensus 125 kNReSAqRSR~RKKqYIeELE~kVq~Lq~E------------------------Ns~Ls~qv~~Lq~q~~~L~~EN~eLK 180 (351)
+|.+.-.+--..++..|.+||+++..++.+ |.+|+.++..|+..+..|..+|-+|+
T Consensus 108 ~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt 187 (617)
T PF15070_consen 108 ENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELT 187 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 333433333346778888888887776654 45667777777777777777776666
Q ss_pred HHHhhh
Q 038341 181 ERMTTY 186 (351)
Q Consensus 181 qrLqsL 186 (351)
..|++-
T Consensus 188 ~~lq~E 193 (617)
T PF15070_consen 188 SALQSE 193 (617)
T ss_pred HHHHHH
Confidence 665543
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.16 E-value=8.3 Score=38.40 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 123 IESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQR 177 (351)
Q Consensus 123 iLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~ 177 (351)
.++|.+.--.+|..--+.++.||+.+.++.+....|.+.|..|++.+.-|..-.+
T Consensus 75 ~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakR 129 (333)
T KOG1853|consen 75 QERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKR 129 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhh
Confidence 4566666666666667778889999999988888899999888888887776543
No 94
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.13 E-value=9.7 Score=38.93 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=4.6
Q ss_pred ccccccCCC
Q 038341 279 VPVLCVDDN 287 (351)
Q Consensus 279 ~~~~~~~~~ 287 (351)
-++||+|..
T Consensus 497 ~~~lilDEp 505 (562)
T PHA02562 497 TNLLILDEV 505 (562)
T ss_pred cCeEEEecc
Confidence 445555543
No 95
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.12 E-value=3.1 Score=36.86 Aligned_cols=26 Identities=12% Similarity=0.348 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
|.+|..++..|+.++..|+.++..|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444443
No 96
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.98 E-value=12 Score=36.76 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 167 NMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 167 ~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
.+...+..+...+|..|+.++.+..-.+..++.++++...|+.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~ 258 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLA 258 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333333334444444444433
No 97
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.96 E-value=5.2 Score=45.74 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
.|++||.+++.++.+...+.+........+..|..+...|+.+|+.
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444555555555554443
No 98
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.87 E-value=6.5 Score=43.40 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
.+.||.+...|..|..+++.+-.-|-+++..|..||-.|..++..|.+..
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQ 120 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQ 120 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 46677777777777777777777778888999999999999988887544
No 99
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.82 E-value=22 Score=33.84 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch----hhhhHHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI----VFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~----~lkda~~E~Lk~EVqRLR~a 210 (351)
+..+..|+..++.++..|+.+...|...|..|..+|..++... ....+.+..|..|+..||.-
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 5556677777777777777777888888888888887776332 22344556777777777775
No 100
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=87.81 E-value=11 Score=41.10 Aligned_cols=7 Identities=43% Similarity=0.468 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 038341 343 MDEPAAG 349 (351)
Q Consensus 343 ~~~~~~~ 349 (351)
+|||.+|
T Consensus 1117 lDE~~~~ 1123 (1179)
T TIGR02168 1117 LDEVDAP 1123 (1179)
T ss_pred ecCcccc
Confidence 3444444
No 101
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.78 E-value=8.6 Score=40.10 Aligned_cols=73 Identities=25% Similarity=0.293 Sum_probs=54.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
||++-+-++=+.-.++....+.-...||..++.++.++..+..++.........+...+..+..+|..|+.+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666555554555555555666778888888888888888888888888888888887777777777776443
No 102
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.72 E-value=12 Score=30.57 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=6.9
Q ss_pred HhhHHHHHHHHHH
Q 038341 125 SNRVSAQKSRMKK 137 (351)
Q Consensus 125 kNReSAqRSR~RK 137 (351)
.|.+..+.+-.++
T Consensus 9 ~n~e~v~~~l~~R 21 (108)
T PF02403_consen 9 ENPEEVRENLKKR 21 (108)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHc
Confidence 4665555555444
No 103
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=87.64 E-value=1.8 Score=37.56 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
|-.+|-.|+.-...|+.+|..+.+++-.|..||+.|-++|+.|..
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 445677788888899999999999999999999999999987753
No 104
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=87.50 E-value=8.3 Score=36.09 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFL----QKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L----~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.|...||..++.|+.+...++.++..+..+.... ..+...|..+-..+-....--+...+.|..||.+||.-
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999998886543322 22333455555444444444455566888999888886
No 105
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.40 E-value=9.6 Score=35.15 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 168 MQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 168 q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+...|..++.+|+..|+.+.. .-...++.+++++..++.+
T Consensus 111 ~l~~l~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 111 ELEELKKELKELKKELEKYSE---NDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 344444444444444443221 1223467777777777776
No 106
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=87.37 E-value=1.6 Score=43.42 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHH
Q 038341 159 TPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLH 211 (351)
Q Consensus 159 s~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~ 211 (351)
+++-+.|..++..|..+|.+||.++ ..|.+||++||++.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa--------------~~lerEI~ylKqli 285 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQA--------------SELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 4445566777888999999999998 45567788888773
No 107
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=87.33 E-value=6 Score=35.32 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+.....++..+..+..+..++..|......-..+...|+..++.......-++..+++|+.|-+.||.=
T Consensus 29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 333444566667777777777777777766677777888888888888888888899999999988876
No 108
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=87.27 E-value=1.1 Score=38.01 Aligned_cols=70 Identities=14% Similarity=0.310 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQK---EQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~---EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
....++|..+..++.|..+|++.+ +...|.+... +.-.+..+...|+++..-.+.+++.|..++..|+.+
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777777777777777654 2333333333 334555666666666666677788999999999987
No 109
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.23 E-value=17 Score=34.27 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
.-++-+..|+.+++.|+..|..|.+.+...+++...|..+..++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555444444444444444444444443
No 110
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.16 E-value=11 Score=44.80 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+..++.+...+..+...|+.+++.+.+...........+...+.+|..+
T Consensus 378 leeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444333333333333333444444444444
No 111
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.00 E-value=13 Score=35.54 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.||.+...++.++..|..+......+...|..+..++...+..|..+..-++...+.|+.++...|..
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666666666666666777777888888888888888888899999999998887775
No 112
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=86.91 E-value=12 Score=36.91 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhh
Q 038341 114 SMDPKRLRRIESNRVSAQKSRMKKLQYVT-DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVF 192 (351)
Q Consensus 114 ~~DpKR~KRiLkNReSAqRSR~RKKqYIe-ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~l 192 (351)
+.|.|=.-|.|..|.--.++..|-+...- +|......-.---.+|..++..|+++.+....--.=||.+|++|-+.+.-
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 33555444666677777777777766555 55555555444556678888888888888877788899999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 038341 193 INAEIADNKAEVGR 206 (351)
Q Consensus 193 kda~~E~Lk~EVqR 206 (351)
|..+++.|-.|+.|
T Consensus 91 Rn~Li~~llqel~R 104 (277)
T PF15030_consen 91 RNRLITHLLQELHR 104 (277)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
No 113
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=86.90 E-value=3.6 Score=34.65 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINA 195 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda 195 (351)
.+..+..+...+..++..++.++..+...|++|-..|..+..+......
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4566777777788888888888888888888888877777755444443
No 114
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=86.62 E-value=3.2 Score=41.32 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.|+=-||.+.+.+..|...|..||..|+.++..+.....+.|..|+.|+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4666789999999999999999999999999999999999999998887
No 115
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.48 E-value=3.2 Score=30.55 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
||+....|......|.+....|.+++..|..|...|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444444444444444333
No 116
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.34 E-value=9 Score=36.49 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.+..|..+...++.++......+..+..+...|+..++.......-.+..++.|++|+..|+..
T Consensus 76 e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 76 EIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh
Confidence 3333333333444444444444444455555555554443333333344566888888888887
No 117
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.18 E-value=13 Score=42.59 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDL-----------------EKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeEL-----------------E~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
++.+-|..|...-.-|-+|..+| |.+...|+.|...|.+++..|.-+
T Consensus 284 el~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 284 ELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777777777777776665 344555555555555555555433
No 118
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.91 E-value=9.2 Score=37.68 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
+..-+.+|+..++.++.++..|-.++..++.+...+..++.+++..|..|+++
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666666666666666666666666666666666666666666555543
No 119
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.90 E-value=23 Score=31.59 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=63.1
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYV----TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIV 191 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYI----eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~ 191 (351)
+..++|+...+-.-+--.-+.|..++ ..+..++...+.+...++.++..+..+...+...|..|+.+...+..-..
T Consensus 64 eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l 143 (177)
T PF13870_consen 64 ELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence 45666666655444444444444433 34566677777777888888888888888888888888888888877777
Q ss_pred hhhH-----HHHHHHHHHHHHHHH
Q 038341 192 FINA-----EIADNKAEVGRLRQL 210 (351)
Q Consensus 192 lkda-----~~E~Lk~EVqRLR~a 210 (351)
+.|- ..+.|+++|..|+.-
T Consensus 144 l~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 144 LRDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6552 234566666665543
No 120
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.72 E-value=6.7 Score=34.02 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.-|+..+..+.....+|-.+-..|...+..|..++....+|+
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~ 60 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRI 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 121
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.66 E-value=2 Score=31.58 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+|+.+...|++....|..++..|..||..|+..+..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777766665554
No 122
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.62 E-value=11 Score=34.86 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.+|+.++..|+.++..|..++..+......+...+.+.+ .........||..|+..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~-------------~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELR-------------QEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444444443333322 22344556666666665
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.52 E-value=19 Score=33.55 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
..+..++..++.+...|.-+...|..++..+..|..+|..+....
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444455555555555554443
No 124
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=85.29 E-value=25 Score=32.04 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhhh
Q 038341 149 KALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN-NNIVFI 193 (351)
Q Consensus 149 q~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe-Qq~~lk 193 (351)
..++.+...|..++..|+.++..|....+.+..++..|+ ++..++
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~ 130 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELK 130 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHH
Confidence 566778888888888888888888877777777766665 333433
No 125
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.24 E-value=5.1 Score=33.74 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 145 EKKAKALENQIAML--TPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 145 E~kVq~Lq~ENs~L--s~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+.++..++++...| +..+..|+-....+..+-+.+..+|+.+.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444444444 44444444444444444444444444443
No 126
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.05 E-value=12 Score=41.32 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhcch-----hhhh
Q 038341 123 IESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQ---VSLYQNMQEFLQKEQRSLSERMTTYNNNI-----VFIN 194 (351)
Q Consensus 123 iLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~q---v~~Lq~q~~~L~~EN~eLKqrLqsLeQq~-----~lkd 194 (351)
+|.-++.||..+-|-++.+-++ +-..|.+.-.-|..+ .+.|+.+...|++|-.+||.++.+|+++. .+|.
T Consensus 129 vLteqVeaQgEKIrDLE~cie~--kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~ 206 (861)
T KOG1899|consen 129 VLTEQVEAQGEKIRDLETCIEE--KRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRL 206 (861)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH--HHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHh
Confidence 4566777887777776644333 322332222222222 26788888999999999999999998443 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 195 AEIADNKAEVGRLRQLHLYQQQLK 218 (351)
Q Consensus 195 a~~E~Lk~EVqRLR~a~i~qQqq~ 218 (351)
.|.|-.||.+++.-.|-+|+.+
T Consensus 207 --se~l~qevn~~kv~e~~~erlq 228 (861)
T KOG1899|consen 207 --SENLMQEVNQSKVGEVVQERLQ 228 (861)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777766666666533
No 127
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.92 E-value=7.2 Score=35.16 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQ-NMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq-~q~~~L~~EN~eLKqrLqsLe 187 (351)
.+||.....+++..++|+.++..++ .+...|..++..|+..++.|+
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666655443 334445555555555555444
No 128
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.80 E-value=11 Score=43.22 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+.+|+.+++.+...+.+-+..+..-+++...|..|-.+|+..+...+++..-..-.++.|+.|+..|+..
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666677777777777777777777665555555556666666555543
No 129
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.62 E-value=11 Score=33.54 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 165 YQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 165 Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+..+...+......+..++..+.+...-.....+.++.++.+++..
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQEN 173 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333322222223344555666666555
No 130
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.34 E-value=9.3 Score=38.35 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLS-----------ERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLK-----------qrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
-.++.|-+|++.|+.||..|+.+...|..+...+..+-+.|- .+|..|..+...|.-.+....+||.+|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888888888877755554444444332 233444433333333344555555555
Q ss_pred HHH
Q 038341 208 RQL 210 (351)
Q Consensus 208 R~a 210 (351)
..-
T Consensus 240 lsq 242 (306)
T PF04849_consen 240 LSQ 242 (306)
T ss_pred HHH
Confidence 444
No 131
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.31 E-value=13 Score=29.69 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.+=+.++..|..|...|+.+.-.+......|...+.++...+..+.. -.+.+..++..|+..
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~-------~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK-------KLEELEKELESLEER 69 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34445566666666666666555555555555555555555544432 235566666666654
No 132
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.13 E-value=25 Score=34.86 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
........+..+-+.+||.+...|..|...|..+...+.++-.....+.+.++.++..+.++..--.+.++....++.+|
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666777777777777777777777777666666666677777777666666666666777778888888
Q ss_pred HHH
Q 038341 208 RQL 210 (351)
Q Consensus 208 R~a 210 (351)
|..
T Consensus 133 ~kt 135 (314)
T PF04111_consen 133 RKT 135 (314)
T ss_dssp HT-
T ss_pred Hhc
Confidence 877
No 133
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=84.03 E-value=20 Score=28.67 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALEN--QIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY---NNNIVFINAEIADNKAEVGRLRQLHLYQ 214 (351)
Q Consensus 140 YIeELE~kVq~Lq~--ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL---eQq~~lkda~~E~Lk~EVqRLR~a~i~q 214 (351)
.+..|++.+..|-+ .+.+|+.++..+...+..|..+-.++-.+|..+ ...........+.|..+...+-.. |+
T Consensus 11 ~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~--fq 88 (102)
T PF14523_consen 11 NVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQE--FQ 88 (102)
T ss_dssp HHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 46777888877763 667788888888888888888877777777666 222333345566777777665555 55
Q ss_pred HHHH
Q 038341 215 QQLK 218 (351)
Q Consensus 215 Qqq~ 218 (351)
..|.
T Consensus 89 ~~q~ 92 (102)
T PF14523_consen 89 KAQR 92 (102)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 134
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=83.93 E-value=8.3 Score=38.69 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=45.4
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKA---KALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 142 eELE~kV---q~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
++|.++. ...+.|+..|.+++..+++.+..+..||.+|.+.|.+.... ...|+.|+..|+--
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~-------Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKES-------QRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4555553 34567888999999999999999999999999999776421 23456666655554
No 135
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=83.93 E-value=5.1 Score=33.53 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRS 178 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~e 178 (351)
|+.|-..-|.+|..|+.++..|..++..|+.+...-..|.++
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544444444333
No 136
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.84 E-value=12 Score=45.48 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=56.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 124 ESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 124 LkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.+-.+.+++++.-=+..+...|++++.|++|+.+|+..+..+.+....+..|..++..+|..+.
T Consensus 1645 q~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1645 QRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3466889999999999999999999999999999999999999998888888888888888765
No 137
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=83.74 E-value=21 Score=32.98 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEF-LQKEQRSLSERM 183 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~-L~~EN~eLKqrL 183 (351)
.-...|.+|+.++..|+.+...|..+...+.+.... +..+++..+..+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei 172 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEI 172 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666665555443 233334444444
No 138
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.74 E-value=17 Score=35.33 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
..-+..|+..+..++.....|..++..|......|..+...|+.++..++... ...-+.+..||..++.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~---~e~~~~~e~e~~~i~e 156 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL---AEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34467788888888888888888888888888888888888888887776543 2223355555555554
No 139
>PRK03918 chromosome segregation protein; Provisional
Probab=83.49 E-value=25 Score=38.18 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=5.8
Q ss_pred cccccccCCC
Q 038341 278 QVPVLCVDDN 287 (351)
Q Consensus 278 q~~~~~~~~~ 287 (351)
..|+|++|..
T Consensus 812 ~~~~lilDEp 821 (880)
T PRK03918 812 NIPLLILDEP 821 (880)
T ss_pred CCCeEEEeCC
Confidence 4566666654
No 140
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.32 E-value=10 Score=37.23 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
.+++..|++.++.|+.+|..+++.++.+...+.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~ 169 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQ 169 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444433333
No 141
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.20 E-value=18 Score=38.98 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
-+.+++..+..+++|.+.+.+++..+..+...|..||..|...|+.+.
T Consensus 142 ~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 142 KLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 334444555555555666666666666666666666666655555544
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.80 E-value=30 Score=34.44 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
+.|++.+..|+.+...|..+++.+..-...|......|+.
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~ 186 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEE 186 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544333333333333333
No 143
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.49 E-value=29 Score=35.77 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
|-|..+..||.-+..++.||..|..++..+.+++.....|.++|-..|
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544443333
No 144
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.41 E-value=24 Score=36.07 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
..-+.|+.+++.+++.|+.+...+..++..+
T Consensus 170 ~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~ 200 (562)
T PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTY 200 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666665555555555555533
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.22 E-value=12 Score=32.73 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
++.|...+..++.|...|..++..|..+...|..|...|..+.+.+... ....+.|+.++..|..-
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~----~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL----KKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443333211 12234455555555443
No 146
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.21 E-value=3.8 Score=39.55 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
..+||-|=|++ ..|||.++..+..++..|+.++..|+.+
T Consensus 84 VtsQRDRFR~R--n~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 84 VTSQRDRFRQR--NAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544 4777777777766666666665554443
No 147
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=82.08 E-value=3.5 Score=40.12 Aligned_cols=13 Identities=46% Similarity=0.493 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQL 210 (351)
Q Consensus 198 E~Lk~EVqRLR~a 210 (351)
+.|++|-+|||.+
T Consensus 94 ~~l~~EN~rLr~L 106 (283)
T TIGR00219 94 QNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777777776
No 148
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=82.06 E-value=13 Score=31.34 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLY--QNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~L--q~q~~~L~~EN~eLKqrLqsLe 187 (351)
.-++.|+.++.......+.+..++..| ..+.+.|..+-.+++.++..++
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444444444444444444 4444444444444444444443
No 149
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=81.96 E-value=10 Score=35.91 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 169 QEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 169 ~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
...|..||++||.+++.|+.+. ...+.+++|.++||.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~----~~~~~l~~en~~L~~l 108 (276)
T PRK13922 71 LFDLREENEELKKELLELESRL----QELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3445555555555555544321 2235778888888877
No 150
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.81 E-value=34 Score=35.23 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=27.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRS 178 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~e 178 (351)
+..-+|..|-.+-.|+-. ++|-.=.+.|+.+..+|..++..|+...+.|..-.++
T Consensus 224 eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344555555555444333 4444444555555555555555555555555444444
No 151
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=81.74 E-value=16 Score=34.55 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 038341 150 ALENQIAMLTPQVSLYQNMQE---FLQKEQRSLSERMT 184 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~---~L~~EN~eLKqrLq 184 (351)
.+..||.+|++++..|+.+.. .|..||.+|+.-|.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444433333 55666666666543
No 152
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=81.67 E-value=11 Score=42.79 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
+.+-|..|+...-.+..|+..|+..+..|.+|.+.|..-++.++.+..-.+..+|.++.+++.|..
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334455556666666777777777777777777777777777665544444445544444444433
No 153
>PRK12704 phosphodiesterase; Provisional
Probab=81.63 E-value=53 Score=34.91 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=7.8
Q ss_pred CCccHHHHHHHhc
Q 038341 261 NGESIEEILRLHQ 273 (351)
Q Consensus 261 ~~~~~~~~~~~~~ 273 (351)
.|-||.-+-.+.+
T Consensus 229 eGrnir~~e~~tg 241 (520)
T PRK12704 229 EGRNIRALETLTG 241 (520)
T ss_pred CcchHHHHHHHhC
Confidence 3566666665555
No 154
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=81.63 E-value=0.82 Score=38.12 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.||..|...+..|..++..|..++..|+.+...+......|+..|...+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq 73 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
Confidence 6899999999999999999999999998888888877777777664433
No 155
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.52 E-value=46 Score=31.01 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
..+++.+++-++-..+=..-+..+..++.++..|+-+...|..++..++++...|.
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444555555555566666665556555555555555554
No 156
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=81.45 E-value=35 Score=35.91 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLRQL 210 (351)
Q Consensus 197 ~E~Lk~EVqRLR~a 210 (351)
.+.+++|+.++..+
T Consensus 212 ~q~r~~ela~r~aa 225 (499)
T COG4372 212 AQARTEELARRAAA 225 (499)
T ss_pred HHHHHHHHHHHHHH
Confidence 45788888887776
No 157
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.36 E-value=6 Score=33.41 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 156 AMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 156 s~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
.++..++..+++++..|..+|..|+.+|+.|..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344455555555555555556666666655543
No 158
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.25 E-value=8.4 Score=39.52 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSL--------------YQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~--------------Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
+.+.|+..|..|..++.. |+.-...+..||+.|+.+|+++.+++--++-+...|.+|+...
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 344555555555555443 4555677888999999999999988876666666666665443
No 159
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.24 E-value=11 Score=30.71 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+.|.+||.++..-+.-+.+|...|+..+.....+...-+.|-.|+..+
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357788888877777777777777766665555555555555554444
No 160
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=81.23 E-value=31 Score=30.02 Aligned_cols=72 Identities=17% Similarity=0.067 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhh-hHHHHHHHHHHH
Q 038341 131 QKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFI-NAEIADNKAEVG 205 (351)
Q Consensus 131 qRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lk-da~~E~Lk~EVq 205 (351)
.+|.+--|.-.++|-.+...|++-+..|..+...+.+....|..+..++...|+. ..+-+ +.....++.|+.
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~---eK~ak~~l~~r~~k~~~d 94 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED---EKQAKLELESRLLKAQKD 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 3444444455555555555555555555555555555555555555555555544 22223 333444444443
No 161
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=81.17 E-value=4.7 Score=33.61 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLH 211 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~ 211 (351)
++..|+............+..++..|..|.+.|+.+++--- +..-..++|-.|++|+.||+..+
T Consensus 4 kI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nP-evtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 4 KIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNP-EVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333333445555666777777777777664321 22223456779999999999983
No 162
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.07 E-value=21 Score=35.18 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
|..+..+++.++.....|......|.........|-...++||++|..-.---=.++|.|.+|++.|=..
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555666666666677777777632222223477888888766554
No 163
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.96 E-value=25 Score=40.31 Aligned_cols=72 Identities=26% Similarity=0.353 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhh
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLY-----QNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~L-----q~q~~~L~~EN~eLKqrLqsLe 187 (351)
|-...-|=|.||+--.-+++|.-+|-+++|.+-++|......|+.=+... .+-...+..|-++||..++.-.
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr 1102 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKR 1102 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456789999999999999999999999999999988877655443 3445567778888888776544
No 164
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.72 E-value=29 Score=34.76 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=54.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh---hh
Q 038341 118 KRLRRIESNRVSAQKSRMKKL-QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIV---FI 193 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKK-qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~---lk 193 (351)
+..|.-+.+..++.+++.+.+ +-+.++-.+++.|..+-..+-.+|..+......+...-++|...+..+....- +.
T Consensus 26 ~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~ 105 (294)
T COG1340 26 KEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLG 105 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 334456666677766655443 34555566666666666666666666665555555555555555544432222 22
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038341 194 NAEIADNKAEVGRLRQL 210 (351)
Q Consensus 194 da~~E~Lk~EVqRLR~a 210 (351)
-.-.+.|.++|++|...
T Consensus 106 ~~~~~~ler~i~~Le~~ 122 (294)
T COG1340 106 GRSIKSLEREIERLEKK 122 (294)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 23356888899988887
No 165
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=80.58 E-value=12 Score=32.90 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 159 TPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 159 s~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..+-..++++......|..+||.||+.|+-+..-.+.+++.|.+.|.-|..+
T Consensus 10 Q~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 10 QTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555555555555555555555555
No 166
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=80.30 E-value=5.5 Score=41.96 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 156 AMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQL 217 (351)
Q Consensus 156 s~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq 217 (351)
.+|...+..|+.++..|+..+++|+++| .++..+|.+||++ |+|++
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI--------------~eer~~v~~lkql--~~~~q 454 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRI--------------AEERERVIELKQL--VNLLQ 454 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH--HHHHh
Confidence 4577778888899999999999999988 5667889999999 66653
No 167
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=80.30 E-value=36 Score=33.50 Aligned_cols=76 Identities=9% Similarity=0.128 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhh-cchhhhhHHHHHHHHHHHHHH
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQ----NMQEFLQKEQRSLSERMTTYN-NNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq----~q~~~L~~EN~eLKqrLqsLe-Qq~~lkda~~E~Lk~EVqRLR 208 (351)
..+-...+..|+.+|..|.+++....++|.+|. .++-...+....|+.+|+.+. .+..-.+.+.+..+.|...|-
T Consensus 76 eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 76 EEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666665552 333444445666666666665 222233445555555555444
Q ss_pred H
Q 038341 209 Q 209 (351)
Q Consensus 209 ~ 209 (351)
.
T Consensus 156 ~ 156 (258)
T PF15397_consen 156 R 156 (258)
T ss_pred H
Confidence 3
No 168
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.28 E-value=14 Score=42.33 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhh-------cc
Q 038341 127 RVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQ----------EFLQKEQRSLSERMTTYN-------NN 189 (351)
Q Consensus 127 ReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~----------~~L~~EN~eLKqrLqsLe-------Qq 189 (351)
++.+++-=+||+.-+++|++..+.|..+...+..+|..|+++. ..|...|-+|..|+..|+ .-
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 5677777788999999999998888888888888888887763 334444445555544444 22
Q ss_pred hhhhhHHHH-------HHHHHHHHHH
Q 038341 190 IVFINAEIA-------DNKAEVGRLR 208 (351)
Q Consensus 190 ~~lkda~~E-------~Lk~EVqRLR 208 (351)
..+.+-+.| .|++||.-++
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223333333 6777776663
No 169
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.19 E-value=7.9 Score=38.31 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 113 HSMDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 113 ~~~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
..+.|||.+--.. ...-......+.+.+.++..++.+...|..+......+...|..+....+.+|
T Consensus 214 ~~V~P~~~~l~~a-----~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 214 KEVEPKRQKLEEA-----EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp CCCCHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567777663222 22222233333344444444444444444444433333344444433333333
No 170
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=80.12 E-value=14 Score=31.93 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
+|=.+|..|+.....|..++..|..+...|..||..|+..
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666665443
No 171
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=80.03 E-value=13 Score=32.75 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
...|+.-..=+.|-++|.++|+.|+.+...+..=|..|+.||.-|+ -+|+.|-..+..+
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE----------~aLkqER~k~~~~ 72 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE----------YALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhcc
Confidence 3567777777888999999999999999999999999999996665 4666666555544
No 172
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=79.85 E-value=7.7 Score=39.72 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+.+||.+++....-|+.|-.+-+.|-.+...| |.-|..++.+.....-+++.+.+|+.|++.+
T Consensus 121 v~EveekykkaMvsnaQLDNEKsnl~YqVDtL-------KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~ 183 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTL-------KDVLEEQEEQLAESYRENEEKSKELERQKHM 183 (405)
T ss_pred hHHHHHHHHHHHHHHHhhcccccceeeeHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766666665554444444444333 3334434433344455567777777776665
No 173
>PHA03161 hypothetical protein; Provisional
Probab=79.76 E-value=34 Score=31.37 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=45.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHH
Q 038341 125 SNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEV 204 (351)
Q Consensus 125 kNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EV 204 (351)
.-|.+-++.+.+|+. .+++.+|..+..++.+...+++.|..-+..-...-..|..++..|. +.|.-|+
T Consensus 42 ~t~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLk----------eel~~EL 109 (150)
T PHA03161 42 HTKKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELK----------EDIHFEI 109 (150)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 334444444444443 7788888888888888888888876654444444555555554443 4555666
Q ss_pred HHHHHH
Q 038341 205 GRLRQL 210 (351)
Q Consensus 205 qRLR~a 210 (351)
.+|...
T Consensus 110 e~l~~~ 115 (150)
T PHA03161 110 EALNHG 115 (150)
T ss_pred HHHhcC
Confidence 665544
No 174
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.71 E-value=47 Score=36.76 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
-+.+|+.+.+.|+.....|.++++.+......|.
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333
No 175
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=79.64 E-value=7.5 Score=44.59 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQ--EFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~--~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
|..+++|++.-.+|..+-.-|.+|+..++.+. ..|..|+-.||++|..|+.+.-.-.+.++.|..|...|..+
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666777777777766 77788888899999988877777777788888888877766
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=79.63 E-value=11 Score=36.14 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+.+|..++..|+.|+.+|+-+++.++.+...+....++|-.+|+.+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999888888888888887777653
No 177
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=79.44 E-value=19 Score=37.89 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=51.5
Q ss_pred HHHHhhHHHHHH--HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 122 RIESNRVSAQKS--RMKKLQYVTDLEKKAKAL--------------ENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 122 RiLkNReSAqRS--R~RKKqYIeELE~kVq~L--------------q~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
|+|+.--+|--| -.-|+.|-+++|+++..- ..+...+..++..|..++..--.||..|.+.+++
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEa 453 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEA 453 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433344333 245889999999886543 3445556666666666666666667666665554
Q ss_pred hhcc-------hhhh----hHHHHHHHHHHHHHHHH
Q 038341 186 YNNN-------IVFI----NAEIADNKAEVGRLRQL 210 (351)
Q Consensus 186 LeQq-------~~lk----da~~E~Lk~EVqRLR~a 210 (351)
-++. -+-- .-++.+|.+||.|||.+
T Consensus 454 erqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtl 489 (593)
T KOG4807|consen 454 ERQALRQCQRENQELNAHNQELNNRLAAEITRLRTL 489 (593)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3311 1111 11344788888888887
No 178
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=79.41 E-value=10 Score=41.03 Aligned_cols=67 Identities=22% Similarity=0.214 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 113 HSMDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 113 ~~~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
...|.|-+||-. |+=|-+--..+-++.+. .-...|++++..|..+++.|.+||-.||+||+.|..+.
T Consensus 273 ~~~d~kv~krqQ---------RmIKNResA~~SRkKKK--Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 273 VGSDIKVLKRQQ---------RMIKNRESACQSRKKKK--EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred CccCHHHHHHHH---------HHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 456888888532 34333333344443321 22346889999999999999999999999999987543
No 179
>smart00338 BRLZ basic region leucin zipper.
Probab=79.25 E-value=22 Score=26.91 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
+..|+.+...|..++..|..+...|..|+..|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 180
>PRK02224 chromosome segregation protein; Provisional
Probab=79.17 E-value=28 Score=37.92 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+.++...+.+++.+++.+..+...|..++..+......+..+..+++.+|+.+
T Consensus 587 ~~~~le~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 587 RIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555555555555555555556555554
No 181
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.77 E-value=9 Score=39.80 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 127 RVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 127 ReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
-++|.-.|+|-++--...|..+..+..|...|++++.........|..|+..||.-+..++
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4677888888888888888899999999999999999888888888888888888776665
No 182
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=78.53 E-value=56 Score=31.61 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 038341 196 EIADNKAEVGRLR 208 (351)
Q Consensus 196 ~~E~Lk~EVqRLR 208 (351)
..+.|.+||+.|+
T Consensus 285 ~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 285 EAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 3457777777664
No 183
>PRK10698 phage shock protein PspA; Provisional
Probab=78.51 E-value=42 Score=31.70 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHH-----------HHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAE-----------IADNKAEVGRLRQ 209 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~-----------~E~Lk~EVqRLR~ 209 (351)
+..|+..+...+.....|..++..|+.....+......|+.|..+-+....+.+.+ .+.+.+.|.++..
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea 180 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 44566666666666666777777777777777777777777766666555555443 3345555555554
Q ss_pred H
Q 038341 210 L 210 (351)
Q Consensus 210 a 210 (351)
-
T Consensus 181 ~ 181 (222)
T PRK10698 181 E 181 (222)
T ss_pred H
Confidence 3
No 184
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=78.46 E-value=8.4 Score=39.51 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=7.3
Q ss_pred CCCCchhhhhcCCCC
Q 038341 227 VWDCGLDELMNSTWC 241 (351)
Q Consensus 227 ~~~~~~~~~~~s~f~ 241 (351)
.|.-...-++.++|.
T Consensus 123 ~f~k~~~~lIg~Yf~ 137 (420)
T PF07407_consen 123 EFDKDSHPLIGRYFN 137 (420)
T ss_pred cccchhhhHHhhhcC
Confidence 344444445555554
No 185
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=78.41 E-value=50 Score=30.58 Aligned_cols=86 Identities=20% Similarity=0.110 Sum_probs=47.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNK 201 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk 201 (351)
|++.-=..+-..|.++..|.+.++..+..++.....|...-..-......+..|..++..+.+...+ -.+.+.+..+
T Consensus 98 r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~---~~e~is~~~k 174 (216)
T cd07627 98 RSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKK---EFEEVSELIK 174 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4443344566778888888888888888888777777421100112223333333333333333322 1244456777
Q ss_pred HHHHHHHHH
Q 038341 202 AEVGRLRQL 210 (351)
Q Consensus 202 ~EVqRLR~a 210 (351)
+|+.|+..-
T Consensus 175 ~El~rF~~~ 183 (216)
T cd07627 175 SELERFERE 183 (216)
T ss_pred HHHHHHHHH
Confidence 777776443
No 186
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.92 E-value=23 Score=28.22 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
|-..|..|-.+-+.|......+...+..|+.....+..+...|+.+++.++.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666677766666653
No 187
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.90 E-value=40 Score=38.71 Aligned_cols=13 Identities=38% Similarity=0.445 Sum_probs=6.5
Q ss_pred CCCCccHHHHHHH
Q 038341 259 PYNGESIEEILRL 271 (351)
Q Consensus 259 ~~~~~~~~~~~~~ 271 (351)
|.|-..|||..+.
T Consensus 963 ~VN~~Aiee~e~~ 975 (1163)
T COG1196 963 PVNLRAIEEYEEV 975 (1163)
T ss_pred CCChhHHHHHHHH
Confidence 3455555555443
No 188
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.88 E-value=38 Score=27.96 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=56.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 120 LRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 120 ~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
+.++-..+......=..|+.-+..||.++..|..|.+.-..+.-.+.+....|..|++.|+..+.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44566777788888888889999999999999999999999999999999999999999988764
No 189
>PF15058 Speriolin_N: Speriolin N terminus
Probab=77.84 E-value=2.2 Score=40.39 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 038341 164 LYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 164 ~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqR 206 (351)
-|+++...|+.||.+||+++..+.....+|.++-|+-..-.+|
T Consensus 9 GlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r 51 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQR 51 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4556677788888888888877776666666666655554444
No 190
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=77.61 E-value=13 Score=36.33 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQE----FLQKEQRSLSERMT 184 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~----~L~~EN~eLKqrLq 184 (351)
.+..|..||.+|++++..+..+.. .|..||.+||.-|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777777777766633322 26677777766543
No 191
>PRK02224 chromosome segregation protein; Provisional
Probab=77.53 E-value=42 Score=36.67 Aligned_cols=8 Identities=38% Similarity=0.708 Sum_probs=4.1
Q ss_pred cccccCCC
Q 038341 280 PVLCVDDN 287 (351)
Q Consensus 280 ~~~~~~~~ 287 (351)
|++++|+.
T Consensus 813 ~~~ilDEp 820 (880)
T PRK02224 813 PPLILDEP 820 (880)
T ss_pred CceEecCC
Confidence 44555543
No 192
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.52 E-value=10 Score=32.36 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
|=.++..|+.....|..++..|..+...|..||..|+..-
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666666666666665443
No 193
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.41 E-value=33 Score=40.22 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
++...+..+++.-+.+|+..+..+..|..+.+..+..+..+-..|......+++++..+.+.
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777777777777777777777777777777777777777777666543
No 194
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.27 E-value=37 Score=32.88 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--chhhhhHHH
Q 038341 120 LRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN--NIVFINAEI 197 (351)
Q Consensus 120 ~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ--q~~lkda~~ 197 (351)
+|-.++-|+.+|-.-++|.+|+..+-.....+..|+.++..++... +..+|..++.+++ ..-+|.+++
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777776666666666665443344445544444444443 3445555555542 223444444
Q ss_pred HHHHHHH
Q 038341 198 ADNKAEV 204 (351)
Q Consensus 198 E~Lk~EV 204 (351)
+-++.-|
T Consensus 221 ~yae~~i 227 (243)
T cd07666 221 DMAENNI 227 (243)
T ss_pred HHHHHHH
Confidence 4444333
No 195
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.21 E-value=30 Score=37.41 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
...++.||..|..++..++++...+..|+.+|+.-|++..
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888888888889888888887765
No 196
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=77.10 E-value=4.4 Score=31.84 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 154 QIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 154 ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
|...|+.++..|..++..|..||.-||+..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455667777777777788888888887754
No 197
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.03 E-value=46 Score=38.61 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+.+.+++||..+..|+.||+.|..+|..|..
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777666544
No 198
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.95 E-value=11 Score=28.65 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 157 MLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 157 ~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.+..++..++.+...+..+|..|+.+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555566666666666555
No 199
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.95 E-value=32 Score=37.13 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=11.3
Q ss_pred CCCccchhhHhhcccCCCCCC
Q 038341 327 DPNLGGIEQILSLNNNMDEPA 347 (351)
Q Consensus 327 ~~~lg~~~~~~~~~~~~~~~~ 347 (351)
..|.+-..+|=.|+...++..
T Consensus 317 ~~n~~L~~~I~dL~~ql~e~~ 337 (546)
T KOG0977|consen 317 SRNSALEKRIEDLEYQLDEDQ 337 (546)
T ss_pred ccChhHHHHHHHHHhhhhhhh
Confidence 445555555555665555543
No 200
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=76.79 E-value=19 Score=27.96 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKE 175 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E 175 (351)
|++|...|+.|......|+..+..++.+......|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544444333333
No 201
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.74 E-value=26 Score=38.32 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 114 SMDPKRLRRIESNRVSAQKSRMKKLQYV----TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 114 ~~DpKR~KRiLkNReSAqRSR~RKKqYI----eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
..|.|++|..+.|-++-..+=.++-.-+ ..+|..--.|..|..+++-+-+-|-.++..|..||-.|...+..|.+.
T Consensus 113 eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s 192 (772)
T KOG0999|consen 113 ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 3456776666665443322222221111 223444444455555555555555556666666666666666666543
No 202
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.26 E-value=8.9 Score=40.56 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 153 NQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 153 ~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
....+|.++++.|+++...+..++..+..+|+.++ .+++.|++++..++.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLE-------aE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLG-------QDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-------HHHHHHHHHHHhhhc
Confidence 34445555555555555556666666666665443 234555555544333
No 203
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=76.25 E-value=26 Score=31.96 Aligned_cols=77 Identities=17% Similarity=0.297 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 131 QKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 131 qRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
...+..=++.|+.|-.++...+.+...+...+..++. .|....+.|+.+...+..-..=..+.++.|+++|.+++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 5566666777888888888888888777777776654 4566667777777666655555667788999999988865
No 204
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=76.14 E-value=15 Score=28.67 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 153 NQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 153 ~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
.....+..++..++++...+..||.+|+.++..|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455556666666666667777777777666654
No 205
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.99 E-value=19 Score=36.11 Aligned_cols=71 Identities=18% Similarity=0.351 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQ 216 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQq 216 (351)
..|..++..+.+-...|..++..+++ .|..+.++|-..|..|.+-...-..-++.++.|+.+++++ ||+++
T Consensus 125 ~~Ld~~~~~~~~~~~~l~~~va~v~q---~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~l-vln~~ 195 (300)
T KOG2629|consen 125 RQLDDQFDKAAKSLNALMDEVAQVSQ---LLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQL-VLNMS 195 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-Hhccc
Confidence 34444444444444444444444433 2344445666666666655445566688999999999988 55443
No 206
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=75.88 E-value=26 Score=34.08 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 158 LTPQVSLYQNMQEFLQKEQRSLSERMTTYN-NNIVFINAEIADNKAEVGRLRQLHLYQQQLK 218 (351)
Q Consensus 158 Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe-Qq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~ 218 (351)
+..++..|.-++..|.....++|.+++.-+ ..+-.+..+....++||++|+.. ++|..+
T Consensus 190 ~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~t--N~qLKa 249 (259)
T KOG4001|consen 190 ATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKET--NRQLKA 249 (259)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 333333333333333333344444443332 22233444556889999999998 666543
No 207
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=75.80 E-value=61 Score=30.18 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+..|+..+..++.....|..++..|+++...+......|+.|.....
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555554444
No 208
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=75.78 E-value=12 Score=45.12 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-hhhhhHHHHHHHHH
Q 038341 132 KSRMKKLQYVTDLEKKAKA-------LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN-IVFINAEIADNKAE 203 (351)
Q Consensus 132 RSR~RKKqYIeELE~kVq~-------Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq-~~lkda~~E~Lk~E 203 (351)
..+.+...-+.+|..+|.. |+.++.+|.+++.....+...|..|+...|+|-+.|... ...--..++.|+.|
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 3444445555555555444 455566667777777777777888888888887776633 33334445566666
Q ss_pred HHHHHHH
Q 038341 204 VGRLRQL 210 (351)
Q Consensus 204 VqRLR~a 210 (351)
|.+|+--
T Consensus 1316 i~~Lk~e 1322 (1822)
T KOG4674|consen 1316 ISRLKEE 1322 (1822)
T ss_pred HHHHHHH
Confidence 6555543
No 209
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=75.78 E-value=56 Score=33.03 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhh
Q 038341 127 RVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFIN 194 (351)
Q Consensus 127 ReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkd 194 (351)
-++++|-....+..+.++|...+.-+........+-..++.....|..||--|+++|+...+.+-.++
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888889999999888888888888888888888899999999999999887765544444
No 210
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=75.69 E-value=48 Score=30.72 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 166 QNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 166 q~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
++.+..|..-|.-|+.+|+... ..|+.|+.|+++|+.-
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~-------~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQAR-------KANEALQEDLQKLTQD 110 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4456666666666666665543 3456666666665554
No 211
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=75.60 E-value=25 Score=26.57 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 160 PQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 160 ~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
.++..|..++..|..++..|+..
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 212
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=75.43 E-value=36 Score=27.30 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
||.-=+.+...-.......+.|+........+|..|+.++..|.++
T Consensus 12 le~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~q 57 (70)
T PF04899_consen 12 LEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQ 57 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444445555555555444443
No 213
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=75.40 E-value=41 Score=30.40 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 132 KSRMKKLQYVTDLEKKAKALENQIAM 157 (351)
Q Consensus 132 RSR~RKKqYIeELE~kVq~Lq~ENs~ 157 (351)
.-|.++..+++.++..+...+.+...
T Consensus 128 ~~R~~~~~~~~~a~~~l~kkk~~~~k 153 (236)
T PF09325_consen 128 NRRDKKLIEYQNAEKELQKKKAQLEK 153 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444433333333
No 214
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.38 E-value=92 Score=31.10 Aligned_cols=7 Identities=14% Similarity=0.563 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 038341 204 VGRLRQL 210 (351)
Q Consensus 204 VqRLR~a 210 (351)
|.+|+..
T Consensus 273 i~~Lk~~ 279 (312)
T smart00787 273 IEKLKEQ 279 (312)
T ss_pred HHHHHHH
Confidence 3334333
No 215
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=75.30 E-value=34 Score=35.15 Aligned_cols=49 Identities=10% Similarity=0.235 Sum_probs=21.5
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQ 169 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~ 169 (351)
++..+++.+++|.. .. =...|.+|..+...+..+...|+++...+.++.
T Consensus 10 n~~~v~~~l~~R~~-~~----~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 10 NPEAVKEALAKRGF-PL----DVDELLELDEERRELQTELEELQAERNALSKEI 58 (425)
T ss_pred CHHHHHHHHHhcCC-cc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555521 00 023344444444444444444444444444333
No 216
>PRK00106 hypothetical protein; Provisional
Probab=75.22 E-value=1.1e+02 Score=33.11 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=14.0
Q ss_pred CCccHHHHHHHhccccccccccccCCCCc
Q 038341 261 NGESIEEILRLHQHKMKQVPVLCVDDNHN 289 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 289 (351)
.|-||.-+-.+.+ | -|++||...
T Consensus 244 eGrNir~~E~~tG-----v-dliiddtp~ 266 (535)
T PRK00106 244 EGRNIRTLESLTG-----I-DVIIDDTPE 266 (535)
T ss_pred CcchHHHHHHHhC-----c-eEEEcCCCC
Confidence 4677777777766 2 246666544
No 217
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.16 E-value=54 Score=32.36 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
|.-++++-.....|-.++.+|..++..++.+...|..||..|...+..
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555555555555555555555555555555444433
No 218
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.16 E-value=61 Score=34.39 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=7.6
Q ss_pred CCccHHHHHHHhc
Q 038341 261 NGESIEEILRLHQ 273 (351)
Q Consensus 261 ~~~~~~~~~~~~~ 273 (351)
.|-||.-+-.+.+
T Consensus 223 eGrnir~~e~~tg 235 (514)
T TIGR03319 223 EGRNIRALETLTG 235 (514)
T ss_pred CcchHHHHHHHhC
Confidence 3566666655555
No 219
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.11 E-value=41 Score=31.39 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 170 EFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 170 ~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..|....+.++.+...+++...-.+.....++.++.+|+.+
T Consensus 71 r~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L 111 (194)
T PF15619_consen 71 RVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKL 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444555555555554
No 220
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=75.05 E-value=44 Score=27.29 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-chhhhhHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN-NIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ-q~~lkda~~E~Lk~EVqRLR~a 210 (351)
++.+-.+...+..+...++.+-..++.....=..|...+++.|-.|++ +..+| +...+||.|||.-
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----~~YEeEI~rLr~e 72 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----QQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 444555555566666666666666666666666777777777777773 33333 3557788888764
No 221
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=75.03 E-value=60 Score=29.01 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 195 AEIADNKAEVGRLRQLHLYQQQ 216 (351)
Q Consensus 195 a~~E~Lk~EVqRLR~a~i~qQq 216 (351)
..++.+..+|++|++. |-+|.
T Consensus 111 ~~~~~~~~ki~~Le~~-i~~~~ 131 (146)
T PF08702_consen 111 NILRSNRQKIQRLEQD-IDQQE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH
Confidence 3456777788888877 44443
No 222
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=74.99 E-value=20 Score=38.65 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEV 204 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EV 204 (351)
.++.+-+..++++...+......+.+.++....++..+..||..|..+|..+.++...-.++.|.+...+
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666666666666666666556666666666666666655555554444444444333
No 223
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.69 E-value=11 Score=29.29 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhh
Q 038341 172 LQKEQRSLSERMTTY 186 (351)
Q Consensus 172 L~~EN~eLKqrLqsL 186 (351)
+..||++|+..++.+
T Consensus 19 vk~en~~i~~~ve~i 33 (55)
T PF05377_consen 19 VKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555333
No 224
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=74.53 E-value=12 Score=36.98 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqR 206 (351)
-+.+.+.+++..+.+...+..++..|+.++.....|...|+.+++..+....-...+...|..|..|
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R 295 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKER 295 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhh
Confidence 4556667777777778888888888888888888888888888877765444444455555555443
No 225
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=74.50 E-value=22 Score=37.79 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhh-hhHHHHHHHHHHHHH
Q 038341 132 KSRMKKLQYVTDLEKKAKA---LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVF-INAEIADNKAEVGRL 207 (351)
Q Consensus 132 RSR~RKKqYIeELE~kVq~---Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~l-kda~~E~Lk~EVqRL 207 (351)
+-.++-|+++.++-..+.. .+++...|.+++...+.+.....+|...|..++...-.-.-+ ..++++..++|++.|
T Consensus 235 ~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~l 314 (575)
T KOG4403|consen 235 RQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQL 314 (575)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHH
Confidence 3334444555555444433 345566677778888888777888888777776522111111 134556666666666
Q ss_pred HHH
Q 038341 208 RQL 210 (351)
Q Consensus 208 R~a 210 (351)
|.+
T Consensus 315 R~~ 317 (575)
T KOG4403|consen 315 RVA 317 (575)
T ss_pred HHH
Confidence 665
No 226
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=74.41 E-value=35 Score=35.10 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQR 177 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~ 177 (351)
++..|-.+-.+|..++..|+.+...+..+-.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554444444433
No 227
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=74.25 E-value=15 Score=34.68 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
.|..++..|.+++..|+..+....+|.++|
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 228
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.19 E-value=41 Score=32.34 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 152 ENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 152 q~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
+.-+.++..+...|..+......|.+.+.+.|..|+.
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666667777777777777777777653
No 229
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=74.05 E-value=15 Score=31.10 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+.++.+.+++.+++.|+.+|..|+.++..|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445555555566666666555555555543
No 230
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=73.87 E-value=15 Score=29.70 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHH---------HHHHHHHHHHHH
Q 038341 161 QVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIA---------DNKAEVGRLRQL 210 (351)
Q Consensus 161 qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E---------~Lk~EVqRLR~a 210 (351)
=+..|+.+.+.++.|+=+|+++|..++++ +..++++ +|.+|...+|.+
T Consensus 9 lL~~lQnEWDa~mLE~f~LRk~l~~~rqE--Ls~aLYq~DAA~RViArl~kErd~ar~~ 65 (70)
T PF08606_consen 9 LLSTLQNEWDALMLENFTLRKQLDQTRQE--LSHALYQHDAACRVIARLLKERDEAREA 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHhHHHHHHH
Confidence 35678889999999999999999888765 3444433 777777777766
No 231
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.76 E-value=66 Score=29.41 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 146 KKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 146 ~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
..+..+......|...+..+......+..+...|+.+...
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~ 144 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENA 144 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444333
No 232
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=73.74 E-value=44 Score=29.61 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
..++||.+++.|+.++..+..+|..|+..+..|..+-..+..+|..+.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665555555555555555554433
No 233
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=73.55 E-value=47 Score=27.18 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhc
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQN---MQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~---q~~~L~~EN~eLKqrLqsLeQ 188 (351)
|-.++..|+.+-..++.++..+.. ....|..+-.+||.+|..++.
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555566666665554 355666666777777766653
No 234
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=73.42 E-value=34 Score=37.45 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIAD 199 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~ 199 (351)
.+.-.+|+.+|..|+.++.+|..++..+..+...-..+...-..++........+-++....
T Consensus 78 ~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~ 139 (632)
T PF14817_consen 78 ARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQ 139 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788888888888888888888888877766666665556666665555555554443
No 235
>PF13166 AAA_13: AAA domain
Probab=73.41 E-value=60 Score=34.47 Aligned_cols=64 Identities=11% Similarity=0.210 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
++..+..+..+...+..++..+......+..+...++.++..|+.+..-.+...+.+.+++.+|
T Consensus 408 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 408 LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3333333334444444444444444444444444444444444433222233334444444444
No 236
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.19 E-value=85 Score=31.57 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=21.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~ 163 (351)
+.+.-|+--..-..--.+|-.+||.++.++++.|..|..++.
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nq 69 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQ 69 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455666666666666655555544433
No 237
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=73.19 E-value=80 Score=32.01 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
..|...+.....+|..|..++..|++....+..+++-|+.+++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 33444444444555555555555555555555555555544443
No 238
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.18 E-value=26 Score=31.59 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 169 QEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 169 ~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
...+..|..+||.+|+. ++...++|++.++.|.
T Consensus 156 ~~~~~~ei~~lk~el~~-------~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEK-------KEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 33444444444444443 4555667777766654
No 239
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.92 E-value=14 Score=38.77 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+|..+++.+..+...+..++..++.+...+..+...|+.+|+.++.- .++..+.+.|.+|+.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~-~l~~~E~e~L~~e~~~L~n~ 224 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA-DLQPGEDEALEAEQQRLSNL 224 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC-CcCCCcHHHHHHHHHHHhCH
Confidence 34444555555555566666666666666666666666666666643 34677777888888777655
No 240
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.90 E-value=35 Score=32.50 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
...++-|..+||..+........+|...+.....-+..-..-+.+|+..+.+|.. ..+.++.|+..++
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk-------~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK-------ILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 3445667788888888888888888877777666555555555567777766654 2344555554444
No 241
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=72.84 E-value=26 Score=30.80 Aligned_cols=47 Identities=23% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhh
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFIN 194 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkd 194 (351)
...|+...+....++..|+.+..........-..+|+.|++.+....
T Consensus 29 ~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 29 KRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555566666665554433
No 242
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.83 E-value=60 Score=37.01 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 126 NRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 126 NReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
+-+.-.--+.+-.--++.|..+++.|+.|+.+|.+++.....+...|..++.-||.+|.
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344444445566666777777777777777777777777777777777777766
No 243
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.79 E-value=1.1e+02 Score=35.18 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCCCCc
Q 038341 51 SSGTKPSHPPPPSDHLPM 68 (351)
Q Consensus 51 ~~~~~p~~p~~~~~~~~~ 68 (351)
++|.+=+ +--|+..+|.
T Consensus 262 ~sGq~lP-~tlP~E~Vpp 278 (1118)
T KOG1029|consen 262 KSGQPLP-KTLPPELVPP 278 (1118)
T ss_pred hcCCCCC-CCCChhhcCc
Confidence 5555541 3333445554
No 244
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=72.69 E-value=49 Score=26.67 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 191 VFINAEIADNKAEVGRLRQLHLYQQQLK 218 (351)
Q Consensus 191 ~lkda~~E~Lk~EVqRLR~a~i~qQqq~ 218 (351)
.++....+.|+.+...+=.- ||+.|.
T Consensus 85 r~~~~q~~~L~~~f~~~m~~--fq~~Q~ 110 (117)
T smart00503 85 RTRKAQTEKLRKKFKEVMNE--FQRLQR 110 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 35566677777777666666 666655
No 245
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=72.69 E-value=86 Score=33.17 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
|-.+.+.|+++...|.++-..|..+...|..+.++|
T Consensus 142 ~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443333
No 246
>PF15294 Leu_zip: Leucine zipper
Probab=72.49 E-value=11 Score=37.24 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
|...+..|+.||..|+.++..++.++.....|+..|+.+|..+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888888888888888888888888888877764
No 247
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.43 E-value=83 Score=36.67 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=58.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--chhhhhHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN--NIVFINAEIAD 199 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ--q~~lkda~~E~ 199 (351)
++.++=.+-...+...+.-+++||...+..-.+..+|...+.....+...+..++.++|++++.+.. ..++++ -.+
T Consensus 401 ~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE--E~~ 478 (1200)
T KOG0964|consen 401 KLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE--EKK 478 (1200)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3333344455556666666777777777777777777777777777777777888888888777652 222222 335
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038341 200 NKAEVGRLRQLHLYQQQLK 218 (351)
Q Consensus 200 Lk~EVqRLR~a~i~qQqq~ 218 (351)
|+..|..++.- |.+++.+
T Consensus 479 l~~~i~~~~~d-l~~~~~~ 496 (1200)
T KOG0964|consen 479 LRSLIANLEED-LSRAEKN 496 (1200)
T ss_pred HHHHHHHHHHH-HHHHHHH
Confidence 66666666654 4444433
No 248
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.39 E-value=13 Score=28.85 Aligned_cols=37 Identities=11% Similarity=0.277 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
+.+||.++..+ +..+..++.++..+..+...+++.+.
T Consensus 2 i~elEn~~~~~-------~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRI-------ESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544 44455555556666666666666663
No 249
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.81 E-value=28 Score=31.44 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 158 LTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 158 Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
+..+++.+..+......|...||.+.+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444443
No 250
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.59 E-value=70 Score=37.23 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhcchhhhhHHHH
Q 038341 129 SAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKE----------QRSLSERMTTYNNNIVFINAEIA 198 (351)
Q Consensus 129 SAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E----------N~eLKqrLqsLeQq~~lkda~~E 198 (351)
..++-|.+=+.-+++++.++..|......+..++..+..+.+.|... +..|..+|....++.--.++..+
T Consensus 679 ~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e 758 (1074)
T KOG0250|consen 679 ELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLE 758 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777777777777766666666666655551 33444444444444444444455
Q ss_pred HHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQ 209 (351)
Q Consensus 199 ~Lk~EVqRLR~ 209 (351)
.|++|+++++.
T Consensus 759 ~l~~e~e~~~~ 769 (1074)
T KOG0250|consen 759 KLKEELEHIEL 769 (1074)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 251
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=71.43 E-value=35 Score=38.01 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
.++.|+..+..|+.+|+.-......|..||..||.++.+-..+.-.-+.-+..|..|+++++.
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666665555556666666666666655554444444444555555555554
No 252
>PLN02678 seryl-tRNA synthetase
Probab=71.35 E-value=35 Score=35.69 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=24.5
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
++..+++.+++|-.. .+ -...|.+|..+...+..+...|+++...+..+
T Consensus 14 ~~~~v~~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~ 62 (448)
T PLN02678 14 DPELIRESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKE 62 (448)
T ss_pred CHHHHHHHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777421 11 13444455555444555544444444444443
No 253
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.18 E-value=71 Score=27.96 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTP-------QVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~-------qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
+-..+.+.--..+-.-|.++..+++.++..+.....+...|.. ++..++.+...+..+-..++.+.
T Consensus 96 ~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 96 KEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRY 168 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555666666666666666666655555542 44444444444444444444443
No 254
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.10 E-value=30 Score=34.21 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.+++.+|+.|..++.++..++..++.++..+..|...|+.+|+.++..-.-| .+.|+ .|+|.+
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r---~~~l~---~raRAm 110 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER---QELLK---KRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH---HHHHHH
Confidence 4677777788888888888888888888888888888888888876442221 13333 467887
No 255
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.09 E-value=31 Score=37.06 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
...+.|...+..|+..|..++...+++...+..|.+++++++..|+.+
T Consensus 430 Q~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE 477 (518)
T PF10212_consen 430 QHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777777777777777766666543
No 256
>PRK02119 hypothetical protein; Provisional
Probab=71.03 E-value=24 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
+..+|.++..|+...+-...-+..|
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~L 28 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEEL 28 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555555444444
No 257
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.99 E-value=89 Score=31.03 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Q 038341 123 IESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLY-----------------------------QNMQEFLQ 173 (351)
Q Consensus 123 iLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~L-----------------------------q~q~~~L~ 173 (351)
+.+.++.++.-..|-..-.+.||.-+..|+.+|..|..+...+ ...+..+.
T Consensus 55 l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~ 134 (309)
T PF09728_consen 55 LQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLR 134 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 4445555555555555556677777777777776666433322 23467788
Q ss_pred HHHHHHHHHHhhhhcchhhhhHHHH
Q 038341 174 KEQRSLSERMTTYNNNIVFINAEIA 198 (351)
Q Consensus 174 ~EN~eLKqrLqsLeQq~~lkda~~E 198 (351)
.||..|+.+|..|..+..+++...+
T Consensus 135 ~eN~~L~eKlK~l~eQye~rE~~~~ 159 (309)
T PF09728_consen 135 EENEELREKLKSLIEQYELREEHFE 159 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998887777776655
No 258
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=70.84 E-value=16 Score=35.17 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 151 LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
|+.|+..+.++...|+.+......+-..+..+..+|.+ ..|.+..|..||.-
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K-------q~e~~~~EydrLle 200 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK-------QSEGLQDEYDRLLE 200 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcccHHHHHHH
Confidence 44444444444444444433333333333333333332 34666666666653
No 259
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.75 E-value=55 Score=39.18 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQYV------TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKqYI------eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.++++.+-+.++.|.+.+.-+.+++ ..++..++.|+.+..+...++..+..+...+..+-..+..+++.+.
T Consensus 320 e~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777666544422 2233333333444444444444444444444444444444444443
No 260
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=70.67 E-value=53 Score=26.22 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhcch-hhhhHHHHHHHHHHHHHH
Q 038341 131 QKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSL-YQNMQEFLQKEQRSLSERMTTYNNNI-VFINAEIADNKAEVGRLR 208 (351)
Q Consensus 131 qRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~-Lq~q~~~L~~EN~eLKqrLqsLeQq~-~lkda~~E~Lk~EVqRLR 208 (351)
+.-+.....++..|+..+..++........+|.. +..-...|..+...|-.+|+...... ..-+...+.+..++..|+
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 13 RKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777777777777777777777744 34445566666677777776655222 233444556677777766
Q ss_pred HH
Q 038341 209 QL 210 (351)
Q Consensus 209 ~a 210 (351)
.+
T Consensus 93 ~~ 94 (127)
T smart00502 93 HA 94 (127)
T ss_pred HH
Confidence 66
No 261
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=70.66 E-value=27 Score=30.62 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 133 SRMKKLQYVTDLEKK 147 (351)
Q Consensus 133 SR~RKKqYIeELE~k 147 (351)
-++++++|+.+|+..
T Consensus 75 ElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 75 ELERAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566677777655
No 262
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=70.58 E-value=96 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=19.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKA 148 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kV 148 (351)
|+.-|.+..--.|..+|-||. |.+||.+.
T Consensus 94 k~~q~Rm~~qL~~aE~rhrr~--i~eLe~EK 122 (192)
T PF09727_consen 94 KKMQRRMLEQLAAAEKRHRRT--IQELEEEK 122 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 444455556777778888877 56676643
No 263
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=70.44 E-value=36 Score=34.30 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHH
Q 038341 132 KSRMKKLQYVTDLEKKAK---ALEN----QIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEV 204 (351)
Q Consensus 132 RSR~RKKqYIeELE~kVq---~Lq~----ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EV 204 (351)
.+..+.+.|+++.|.-.. .|+. --..|...+.....+...|.+||..|..+|+.=.+. -++|..||
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~-------kerLEtEi 93 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQN-------KERLETEI 93 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHH-------HHHHHHHH
Confidence 466778888888765432 2222 112355556666777888888888888877543333 25666666
Q ss_pred HHH
Q 038341 205 GRL 207 (351)
Q Consensus 205 qRL 207 (351)
+..
T Consensus 94 ES~ 96 (305)
T PF14915_consen 94 ESY 96 (305)
T ss_pred HHH
Confidence 544
No 264
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=70.36 E-value=40 Score=35.03 Aligned_cols=7 Identities=29% Similarity=0.724 Sum_probs=3.1
Q ss_pred CCCCchh
Q 038341 227 VWDCGLD 233 (351)
Q Consensus 227 ~~~~~~~ 233 (351)
+|...|+
T Consensus 206 ~W~P~Yd 212 (525)
T TIGR02231 206 SWTPSYD 212 (525)
T ss_pred cEeeeeE
Confidence 4444443
No 265
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=70.32 E-value=65 Score=30.01 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 158 LTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 158 Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
|..++..++.++..|..++..|+++....+. -++.|..-+.|-|..
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~e-------Dy~~Li~Im~rark~ 154 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEE-------DYRALIVIMNRARRM 154 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHc
Confidence 4456666677777777777777776655543 356777777777766
No 266
>PRK04406 hypothetical protein; Provisional
Probab=69.76 E-value=27 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+..||.++..|+...+-+..-|..|..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~ 32 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELND 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665555555544444433
No 267
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=69.72 E-value=1.3e+02 Score=34.54 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhcchhhhhHHHHHHHHHHHHHHHHH
Q 038341 154 QIAMLTPQVSLYQNMQEFLQKEQRSLSER---MTTYNNNIVFINAEIADNKAEVGRLRQLH 211 (351)
Q Consensus 154 ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr---LqsLeQq~~lkda~~E~Lk~EVqRLR~a~ 211 (351)
++.+-+.+.+.|+.+...|.....++.+- ++.++.+......-++.+++-+..|++.|
T Consensus 380 ~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h 440 (980)
T KOG0980|consen 380 EAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEH 440 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444433322 35555555555555566666555555543
No 268
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.63 E-value=1.1e+02 Score=29.64 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQ 161 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~q 161 (351)
..++.+++.++.+...+..+
T Consensus 154 ~~~~~~i~~~~~~l~~~~~~ 173 (423)
T TIGR01843 154 KQLEAELAGLQAQLQALRQQ 173 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444443333333333
No 269
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.58 E-value=74 Score=34.14 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
..+..|+.++..++.+...+..++..+.++...+..+...++.++..+.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666655554443
No 270
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.57 E-value=22 Score=40.25 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
++|+++|.+.+..|...+.+|-.+++.+++....|..||.+|+..++.+.
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~ 698 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFI 698 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888888888888888888888888888877653
No 271
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.44 E-value=38 Score=34.23 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 127 RVSAQKSRMKKLQ-YVTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 127 ReSAqRSR~RKKq-YIeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
|.+..+...|+++ -+.-+-.+++.|+.+|..|+..-..++
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444422 333344456666666666666554443
No 272
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.37 E-value=56 Score=35.45 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 174 KEQRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 174 ~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
.+-++++.++..+..+...|+.++..|.+|+++|
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444455555555555555555555555443
No 273
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.36 E-value=54 Score=35.68 Aligned_cols=75 Identities=20% Similarity=0.373 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHhhhhcchh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLY----------------------------QNMQEFLQKEQRSLSERMTTYNNNIV 191 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~L----------------------------q~q~~~L~~EN~eLKqrLqsLeQq~~ 191 (351)
-+..||..+..|+.++..|..+|..+ ......|..||..|+.+|..|+....
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~ 590 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNS 590 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 45666666666666777777666651 25688899999999999976652221
Q ss_pred h-------------------hhHHHHHHHHHHHHHHHHHHHHHH
Q 038341 192 F-------------------INAEIADNKAEVGRLRQLHLYQQQ 216 (351)
Q Consensus 192 l-------------------kda~~E~Lk~EVqRLR~a~i~qQq 216 (351)
. .....+.+.+...||+.+ |...
T Consensus 591 ~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkev--f~~k 632 (722)
T PF05557_consen 591 QPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEV--FKAK 632 (722)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred CCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 1 112234555666788887 7655
No 274
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.32 E-value=32 Score=37.24 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAE 196 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~ 196 (351)
.+-+++|..+++.|..+...+..++..+......+..|..+.+...+.++++..++.-+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~ 385 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT 385 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666665555555555555555555555555554443
No 275
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=69.30 E-value=9 Score=39.29 Aligned_cols=23 Identities=22% Similarity=0.014 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFL 172 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L 172 (351)
.|+.||..|+++++.|..+.+.|
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 276
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=69.00 E-value=90 Score=35.87 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
..-++++|++....+.....|..+.+.|.+....|...+....++++
T Consensus 409 ~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle 455 (980)
T KOG0980|consen 409 QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLE 455 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467777777777777777777777776665555555544444443
No 277
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.90 E-value=45 Score=40.92 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
-+.+|-..+...+.-..++.+++..++++...|..|..+|+..+++++......+...+.+.++|..+.
T Consensus 1640 ~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1640 QLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344444444444444555555555555566666666666666666665555444444445555554444
No 278
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.71 E-value=1e+02 Score=28.79 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=14.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 132 KSRMKK-LQYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 132 RSR~RK-KqYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
+.+.|| +.-..++++++.....+...+..++..|
T Consensus 74 r~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 74 RERLRKSQEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 3344444444444444444444444443
No 279
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=68.65 E-value=76 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTP 160 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~ 160 (351)
.+...|+.....++.++..|+.
T Consensus 27 ~~~~~l~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 27 QAESSLEQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554
No 280
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=68.54 E-value=21 Score=35.56 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh--cchhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSL-------YQNMQEFLQKEQRSLSERMTTYN--NNIVFIN 194 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~-------Lq~q~~~L~~EN~eLKqrLqsLe--Qq~~lkd 194 (351)
..+.++|.+|+.|+.-|..|+++++. +...-..+..|...++.+|.-|+ |.++|..
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~ 281 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRA 281 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45678999999999999999999932 23334567788888888888887 4444433
No 281
>PRK00106 hypothetical protein; Provisional
Probab=68.49 E-value=1.7e+02 Score=31.62 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHH
Q 038341 193 INAEIADNKAEVGR 206 (351)
Q Consensus 193 kda~~E~Lk~EVqR 206 (351)
|+.+.+.++.|..+
T Consensus 171 k~~l~~~~~~~~~~ 184 (535)
T PRK00106 171 REIILAETENKLTH 184 (535)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 282
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.47 E-value=19 Score=34.87 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=9.1
Q ss_pred CCCCCCCCCccHHHHHH
Q 038341 254 PNQGDPYNGESIEEILR 270 (351)
Q Consensus 254 ~~q~~~~~~~~~~~~~~ 270 (351)
-..+|||.-=+.-|-.|
T Consensus 177 E~~l~PF~~F~~~E~~R 193 (248)
T PF08172_consen 177 EESLNPFAAFRKRERQR 193 (248)
T ss_pred HhccChHHHHhHhhHHH
Confidence 34566665555555444
No 283
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.34 E-value=1.1e+02 Score=29.09 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKE 175 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E 175 (351)
.+.-..+.+.|.+-..|+.++..+...+..-+.+...|..+
T Consensus 94 ~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaD 134 (192)
T PF11180_consen 94 AQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQAD 134 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555554444444444433
No 284
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=68.32 E-value=68 Score=33.92 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
++.+.++|..+..|+.||..|..+.....
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777666555443
No 285
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=68.12 E-value=33 Score=26.81 Aligned_cols=27 Identities=19% Similarity=0.323 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQE 170 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~ 170 (351)
||.++..|+...+-+...+..|.....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~ 28 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVT 28 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555555555444444333
No 286
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=68.06 E-value=21 Score=28.86 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 152 ENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 152 q~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
..+...+..++..++++...|..||..|+.+++.+..
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445556666677777777777777777766665543
No 287
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=67.77 E-value=48 Score=33.64 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
-+.+|+.++..|+.+|..|..++..+..+...+..+..++...
T Consensus 138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~ 180 (342)
T PF06632_consen 138 ANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEED 180 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666555555544433
No 288
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.76 E-value=1.1e+02 Score=36.13 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
..++.|.+.++.-+.+--..+ +.++|..|..|.....+|+.++..+......+..+-..|+.+|..++
T Consensus 780 v~~le~~l~~~~~~~~~~~~~---~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E 847 (1293)
T KOG0996|consen 780 VEKLERALSKMSDKARQHQEQ---LHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELE 847 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554444333332222 23344455555555555555555555555555555555555555555
No 289
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=67.68 E-value=61 Score=29.05 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038341 152 ENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQ 216 (351)
Q Consensus 152 q~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQq 216 (351)
.-++..|+..++..++.......++..++..|..|.++..-.+.....|..+......+.-.+|+
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~ 82 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQ 82 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777788888777776666666667777777776666444443
No 290
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.38 E-value=1.1e+02 Score=35.79 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=19.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 125 SNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTP 160 (351)
Q Consensus 125 kNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~ 160 (351)
+.....+..+.+++.-|.+|+.++..+..+...|..
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~ 878 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666665555544444444333
No 291
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.29 E-value=1.1e+02 Score=32.23 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=42.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 125 SNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 125 kNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
+++...++-=.++..-|.+-..+.+.|+.+...+..++..+..+......++.+++++|+.++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 4455555555566666666666666677777777777777777777777777777777766653
No 292
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=67.25 E-value=81 Score=35.64 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Q 038341 124 ESNR-VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQ----------------------------NMQEFLQK 174 (351)
Q Consensus 124 LkNR-eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq----------------------------~q~~~L~~ 174 (351)
+.+| .++...+++--..++.+++.-..++.+|++|..-...++ ++...|..
T Consensus 144 l~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~ 223 (916)
T KOG0249|consen 144 LAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQ 223 (916)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 175 EQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQLKM 219 (351)
Q Consensus 175 EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~~ 219 (351)
|-..+|++++.+.....--.-.+|.|+.|+..||. -..+|.+.+
T Consensus 224 e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~-~~~~~~~~m 267 (916)
T KOG0249|consen 224 ELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR-SSLEKEQEL 267 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHhhhhhh
No 293
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.89 E-value=1.1e+02 Score=36.47 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQ----------YVTDLEKKAKALENQ----------IAMLTPQVSLYQNMQEFLQKEQ 176 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKq----------YIeELE~kVq~Lq~E----------Ns~Ls~qv~~Lq~q~~~L~~EN 176 (351)
.-++-+.|.+|.-|-.-|.+-.+ .+.++|+|++..+.- +.+|....+.|+++...+....
T Consensus 1169 WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L 1248 (1758)
T KOG0994|consen 1169 WDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDL 1248 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555555554444432 245556665554433 3445555555555555555555
Q ss_pred HHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038341 177 RSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQ 216 (351)
Q Consensus 177 ~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQq 216 (351)
.++..+|....++.-+.....|.|.+|+..|-.+ |++.
T Consensus 1249 ~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~--~keL 1286 (1758)
T KOG0994|consen 1249 PQEEETLSDITNSLPLAGKDLESLQREFNGLLTT--YKEL 1286 (1758)
T ss_pred hhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHH--HHHH
Confidence 5555555555555555556667777777666665 5444
No 294
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=66.72 E-value=48 Score=36.11 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhh
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFIN 194 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkd 194 (351)
|+.+.+|+.....|..+|.+|...+..-+.-+..|...-.+|+.+|..+......|+
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~ 222 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS 222 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 678899999999999999888888877766666666666666666655554444443
No 295
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=66.58 E-value=1.2e+02 Score=28.64 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=54.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhcchh----
Q 038341 121 RRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQV-----SLYQNMQEFLQKEQRSLSERMTTYNNNIV---- 191 (351)
Q Consensus 121 KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv-----~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~---- 191 (351)
-+-|++++...-...|+-+|..+.+.+.+++......|..=+ +.|..-...+..|..+|+..|+.-..+.+
T Consensus 9 ~~eL~~~q~~eL~~l~~eq~~~e~e~ke~H~~e~~~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~kr~e~I~~k~ 88 (185)
T PF08703_consen 9 VRELKEKQEQELLKLREEQYESEKELKEEHLKEQFQKLEELARECQAAQLKKLKETCEKETKELKKKLDRKRLESIKEKK 88 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhh
Confidence 345677777888888888888888888888888777765433 23333344557788888887765442221
Q ss_pred hh-hHHHHHHHHHHHH
Q 038341 192 FI-NAEIADNKAEVGR 206 (351)
Q Consensus 192 lk-da~~E~Lk~EVqR 206 (351)
.+ .+..++++.||.+
T Consensus 89 ~~dK~e~er~KrEin~ 104 (185)
T PF08703_consen 89 TKDKDEQERLKREINR 104 (185)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 11 1234566666643
No 296
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.57 E-value=53 Score=32.37 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKE 175 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E 175 (351)
+..|.++..|+.+...|.+++...+.+...|.+-
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY 110 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY 110 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555443
No 297
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=66.38 E-value=40 Score=36.03 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHhhhhc
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLY---Q----NMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~L---q----~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
-++.||.++..|+.+..+|.+++..- . .....|..|-.+++.+|+.+..
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777776432 1 1345555566666666655543
No 298
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.25 E-value=48 Score=33.14 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLRQL 210 (351)
Q Consensus 197 ~E~Lk~EVqRLR~a 210 (351)
...|+.|+..||..
T Consensus 149 ~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 149 HDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666655
No 299
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=66.10 E-value=33 Score=36.62 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------cchhhhhHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQ----------IAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN-------NNIVFINAEIADNKAEVG 205 (351)
Q Consensus 143 ELE~kVq~Lq~E----------Ns~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe-------Qq~~lkda~~E~Lk~EVq 205 (351)
.||.+|+.|+.. +.+|+..|..|....-....|++.+...|+.|. ++.+-.....+.|.-|+.
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467788887764 456888899998888888888888888777665 233334445668889999
Q ss_pred HHHHHHHHHHHHH
Q 038341 206 RLRQLHLYQQQLK 218 (351)
Q Consensus 206 RLR~a~i~qQqq~ 218 (351)
+++.-||.=|-.-
T Consensus 422 K~k~nyv~LQEry 434 (527)
T PF15066_consen 422 KIKANYVHLQERY 434 (527)
T ss_pred HHhhhHHHHHHHH
Confidence 9998877666533
No 300
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=65.78 E-value=1.1e+02 Score=34.49 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHH
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAE 203 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~E 203 (351)
.++..+..|...+...+++...|.+++..|+.+|+.-....--+.+.++.+.+|
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455666666666666666665544333333333333333
No 301
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.60 E-value=68 Score=35.69 Aligned_cols=8 Identities=25% Similarity=0.135 Sum_probs=4.6
Q ss_pred CCCCcccc
Q 038341 245 GPGQMVYA 252 (351)
Q Consensus 245 ~p~q~~~~ 252 (351)
.+|+.||.
T Consensus 626 ~~Gd~V~v 633 (771)
T TIGR01069 626 KIGDKVRI 633 (771)
T ss_pred CCCCEEEE
Confidence 56665553
No 302
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=65.59 E-value=10 Score=31.33 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
|+.+++.|+.+++.++.+|..|..+|..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466778888888888888888888876654
No 303
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=65.58 E-value=82 Score=30.14 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=65.0
Q ss_pred HHHhh-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHH
Q 038341 123 IESNR-VSAQKSRMK-KLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADN 200 (351)
Q Consensus 123 iLkNR-eSAqRSR~R-KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~L 200 (351)
|+-.| ++|+.+-+. |.+...-||+--........+|...-..|..+......--.+++.||.+++. +.+++..+|
T Consensus 25 ilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~---Va~ALF~EW 101 (201)
T PF11172_consen 25 ILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVED---VADALFDEW 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34444 455555443 4566677887777777788889999899999888888888899999999985 347788888
Q ss_pred HHHHH-----HHHHHHHHHHH
Q 038341 201 KAEVG-----RLRQLHLYQQQ 216 (351)
Q Consensus 201 k~EVq-----RLR~a~i~qQq 216 (351)
.+|+. .||.. .+|+
T Consensus 102 e~EL~~Y~~~sLR~~--S~~k 120 (201)
T PF11172_consen 102 EQELDQYSNASLRRA--SEQK 120 (201)
T ss_pred HHHHHHHcCHHHHHH--HHHH
Confidence 88884 36665 4444
No 304
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=65.48 E-value=62 Score=36.04 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 038341 127 RVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 127 ReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqR 206 (351)
..-+.++...=+..++..+.++.+++....+++.++..+...+..|..|+..|+..+..+........ -.+.|.+|+.+
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s-~d~~L~EElk~ 639 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGAS-ADEVLAEELKE 639 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHH
Confidence 34455555555666677777777777777777777777777777777777777777777665443111 14677777777
Q ss_pred HHHH
Q 038341 207 LRQL 210 (351)
Q Consensus 207 LR~a 210 (351)
.|..
T Consensus 640 yK~~ 643 (698)
T KOG0978|consen 640 YKEL 643 (698)
T ss_pred HHhc
Confidence 6665
No 305
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=65.40 E-value=40 Score=29.48 Aligned_cols=47 Identities=6% Similarity=0.082 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
++.++..++..|+........++..+++....|.-.--.+-.+++.+
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eil 98 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEIL 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655555566666555555555544433333344333
No 306
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=65.35 E-value=1.2e+02 Score=31.78 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAK 149 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq 149 (351)
++|..||+...-+-=+|-|..=..+|.+|-.-|=
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP 260 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIP 260 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444445566667776777777765543
No 307
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=65.15 E-value=36 Score=32.78 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+..||+.++.-.....+|..++..|+++...|.-++.++.-+|+.+.
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34556555544444455556666655555555555555555555443
No 308
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=64.90 E-value=46 Score=36.55 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 158 LTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 158 Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
...+|..|.+++.....+..+|+.+|+.. ..++.+++|+.-||.+
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHHh
Confidence 33344444444444444444444444332 4578888888888887
No 309
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=64.59 E-value=76 Score=32.42 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=24.9
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
|-||+.-+|+ +=|+-+-+| |..++.|..|-..+..+|..|.+++..+..|...|
T Consensus 6 dk~ri~~li~--~la~~~~~~--------e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~ 59 (328)
T PF15369_consen 6 DKRRIANLIK--ELARVSEEK--------EVTEERLKAEQESFEKKIRQLEEQNELIIKEREDL 59 (328)
T ss_pred HHHHHHHHHH--HHHHhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4456555554 445444332 33344444444444444444444444444444433
No 310
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=64.49 E-value=20 Score=27.46 Aligned_cols=46 Identities=28% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
|+...|.|||.+++.-. |...+. -.........|..||..|+.+|+
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~d--~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSLD--RSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 35667788887776443 111111 11223334445555555555543
No 311
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.49 E-value=33 Score=30.26 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQL 210 (351)
Q Consensus 198 E~Lk~EVqRLR~a 210 (351)
+.+.++++.|+..
T Consensus 94 ~~l~e~l~eLq~~ 106 (119)
T COG1382 94 EKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 312
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.43 E-value=72 Score=34.20 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
-+++||.++..++.+...+..++..++.+...+..+..+|+.++.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555444444443
No 313
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=64.33 E-value=1.6e+02 Score=34.18 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
.+++|..++....+...+..+++.++.+......+...|+....
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 666 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE 666 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46666666666666666666555555544444444444443333
No 314
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=64.32 E-value=83 Score=31.88 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 156 AMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 156 s~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
..|..-+...+.++..|..|..+|+++|..+..+
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4455556667777888888888888887666644
No 315
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.81 E-value=32 Score=31.79 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 038341 167 NMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 167 ~q~~~L~~EN~eLKqrLqsL 186 (351)
.++..|..|+.+|+.+++.|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~L 123 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 316
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=63.78 E-value=69 Score=32.91 Aligned_cols=11 Identities=18% Similarity=0.039 Sum_probs=5.3
Q ss_pred ccccccccccc
Q 038341 273 QHKMKQVPVLC 283 (351)
Q Consensus 273 ~~~~~q~~~~~ 283 (351)
++.....|.|+
T Consensus 191 G~~~v~~P~lv 201 (418)
T TIGR00414 191 GYQEIYPPYLV 201 (418)
T ss_pred CCEEEeCCccc
Confidence 34444556543
No 317
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.53 E-value=98 Score=26.68 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
..|-.+|-.-... -.+...|+.++..++.+...|..+....+..|...+
T Consensus 45 ~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e 93 (132)
T PF07926_consen 45 QKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESE 93 (132)
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555444333 233344444444444444444444444444444333
No 318
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.52 E-value=1.2e+02 Score=31.00 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 038341 195 AEIADNKAEVGRLRQL 210 (351)
Q Consensus 195 a~~E~Lk~EVqRLR~a 210 (351)
..+..|+.|++..+..
T Consensus 355 ~el~~L~Re~~~~~~~ 370 (498)
T TIGR03007 355 AELTQLNRDYEVNKSN 370 (498)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556665555554
No 319
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.45 E-value=91 Score=31.01 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 038341 172 LQKEQRSLSERM 183 (351)
Q Consensus 172 L~~EN~eLKqrL 183 (351)
...+-++++.++
T Consensus 219 ~Eke~~e~~~~i 230 (269)
T PF05278_consen 219 KEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHH
Confidence 333333444444
No 320
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=63.24 E-value=63 Score=36.57 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKE--------------------------------QRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E--------------------------------N~eLKqrLqsLe 187 (351)
.+.|.....+.|+..|.+|..-++.+..++..|... -+.++-+|++-+
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~se 521 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASE 521 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 455555556666666666666555554444333322 222333444444
Q ss_pred cchhhhhHHHHHHHHHHHHHHHH
Q 038341 188 NNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 188 Qq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.+-++-..+...-.+||.|||-+
T Consensus 522 kEN~iL~itlrQrDaEi~RL~eL 544 (861)
T PF15254_consen 522 KENQILGITLRQRDAEIERLREL 544 (861)
T ss_pred hhhhHhhhHHHHHHHHHHHHHHH
Confidence 44444444444556788999887
No 321
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=63.23 E-value=1.5e+02 Score=32.87 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---------------hhhhhHHHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN---------------IVFINAEIADNKAEVGRLRQLH 211 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq---------------~~lkda~~E~Lk~EVqRLR~a~ 211 (351)
+.....|+.-+..+++..+.....|..|+..|+.+++..... .-.+|-++..|..+|+|++..+
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~ 308 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASL 308 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555566677777788888887777654321 1235666778888888877663
No 322
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=63.22 E-value=2.4 Score=45.19 Aligned_cols=119 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY-NNNIVFINAEIADNKAEVGRLRQLHLYQQQL 217 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL-eQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq 217 (351)
..|+.|+..+..|+.+-.....++..|..+...|......=....+.+ ....-+....++.|+.||+||..+ -.|.
T Consensus 207 ~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~l--K~~~- 283 (619)
T PF03999_consen 207 ENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEEL--KKQN- 283 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHH--HHHh-
Confidence 444555555555555554444444444444444433222222222211 223344556778999999999998 2221
Q ss_pred HhhhcCCCCCCC----CchhhhhcCCCCCCCCCCCccccCCCCCCCCCCccHHHHHHHhcc
Q 038341 218 KMLEQNGLPVWD----CGLDELMNSTWCPTPGPGQMVYANPNQGDPYNGESIEEILRLHQH 274 (351)
Q Consensus 218 ~~~~~~a~~~~~----~~~~~~~~s~f~~~~~p~q~~~~~~~q~~~~~~~~~~~~~~~~~~ 274 (351)
...|. ....++.+.-|++.. +...+.+.-.|-|+ |++|+.|..
T Consensus 284 -------lk~~I~~~R~ei~elWd~~~~s~e---er~~F~~~~~d~~~----E~lL~~hE~ 330 (619)
T PF03999_consen 284 -------LKEFIEKKRQEIEELWDKCHYSEE---ERQAFTPFYIDSYT----EELLELHEE 330 (619)
T ss_dssp -------------------------------------------------------------
T ss_pred -------HHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHhcccch----HHHHHHHHH
Confidence 11232 223333455555544 54455565567676 666666653
No 323
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=63.15 E-value=43 Score=35.53 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
..+|++.|-..+++.......+...+..+.++...+..+..+|.-+|+.|.+.
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~ 482 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVER 482 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35788888888888888888888888888888888888888888888776543
No 324
>PRK14127 cell division protein GpsB; Provisional
Probab=63.12 E-value=28 Score=30.07 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch------hhhhHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI------VFINAEIADNKAEVGRLRQLHL 212 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~------~lkda~~E~Lk~EVqRLR~a~i 212 (351)
.|++++-..+..|..|+.+|..++..|+.+ ..+++.++...+... ....+.+--+-+-|.+|... |
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~-------l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~-V 101 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQ-------VDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKH-V 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHH-H
Confidence 355555555555555555555555444433 334444444332111 01123444555666667665 4
Q ss_pred HH
Q 038341 213 YQ 214 (351)
Q Consensus 213 ~q 214 (351)
|+
T Consensus 102 Fg 103 (109)
T PRK14127 102 FG 103 (109)
T ss_pred hc
Confidence 54
No 325
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=63.03 E-value=1.3e+02 Score=30.74 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 127 RVSAQKSRMKKLQY---VTDLEKKAKALENQI------------------AMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 127 ReSAqRSR~RKKqY---IeELE~kVq~Lq~EN------------------s~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
|+---++|.-|++| .+.||..+..|+.+. +.|.+-+....+++..|.++..+|.+++..
T Consensus 36 ~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~ad 115 (389)
T KOG4687|consen 36 GQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQKAD 115 (389)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 45555666666655 455666666655433 566777777888999999999999999988
Q ss_pred hhcchhhhhHHHH
Q 038341 186 YNNNIVFINAEIA 198 (351)
Q Consensus 186 LeQq~~lkda~~E 198 (351)
|..++.+..-+..
T Consensus 116 LhgD~elfReTeA 128 (389)
T KOG4687|consen 116 LHGDCELFRETEA 128 (389)
T ss_pred HhchHHHHHHHHH
Confidence 8877655554433
No 326
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=62.79 E-value=54 Score=32.81 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQL 210 (351)
Q Consensus 198 E~Lk~EVqRLR~a 210 (351)
..|+.+|.....+
T Consensus 157 ~~Lre~L~~rdel 169 (302)
T PF09738_consen 157 DELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3555565444443
No 327
>PF14282 FlxA: FlxA-like protein
Probab=62.75 E-value=31 Score=29.02 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTP 160 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~ 160 (351)
|+.|+.+++.|+.+...|..
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 45555555555555544443
No 328
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=62.69 E-value=1e+02 Score=26.54 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 115 MDPKRLRRIESNRVSAQKSR---------MKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 115 ~DpKR~KRiLkNReSAqRSR---------~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
.|.++++|+++.=......- ..-....+.+-..+..++....++..-+..-.++......++.++...|+.
T Consensus 13 ~~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~ 92 (139)
T PF05615_consen 13 GDDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQ 92 (139)
T ss_pred cCchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777765422222221 233333344444444444444444443444444444444444444444444
Q ss_pred hhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 186 YNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 186 LeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+..+ ++.|+.++..-|..
T Consensus 93 ~k~~-------ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 93 AKKE-------IEELKEELEEAKRV 110 (139)
T ss_pred HHHH-------HHHHHHHHHHHHHH
Confidence 4322 56666666666665
No 329
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=62.64 E-value=7.7 Score=28.51 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 151 LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
|-..|+.|+.++..++.+...|..||-.|+.++
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334455556666666666666666666666554
No 330
>PRK01156 chromosome segregation protein; Provisional
Probab=62.55 E-value=1.7e+02 Score=32.43 Aligned_cols=35 Identities=6% Similarity=0.005 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
.+..+...|..++..+..+...+..+...|+..+.
T Consensus 208 el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~ 242 (895)
T PRK01156 208 DDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALN 242 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333334433333
No 331
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.40 E-value=68 Score=34.98 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 151 LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
|+...+.|..-+..++.-...+...++.+...|+.|..+...++-++|.|++++.+|+..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444455555555555555566666666666666654
No 332
>PF15294 Leu_zip: Leucine zipper
Probab=62.33 E-value=21 Score=35.43 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 164 LYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 164 ~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.|..+...|..||..||.||..++.++..---....|+.++..|+.+
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~ 175 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDE 175 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999999999999988876666677888888888885
No 333
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=62.31 E-value=1.7e+02 Score=32.33 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 038341 127 RVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 127 ReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqR 206 (351)
|+.+.+.|..=.+-|++|..++..+..++..+..++..-+........+..+++.+-.-|+.-..-.+.....|.+-+.|
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666667888888888888888888888888777777777777777777666665555555555666666666
Q ss_pred HHHH
Q 038341 207 LRQL 210 (351)
Q Consensus 207 LR~a 210 (351)
|..-
T Consensus 154 l~~~ 157 (632)
T PF14817_consen 154 LQGQ 157 (632)
T ss_pred HHHH
Confidence 5554
No 334
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=62.11 E-value=74 Score=24.86 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 130 AQKSRMKKLQYVTDLEKKAKALENQIAMLT-----PQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 130 AqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls-----~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
|.+-..+....+..|+.....+........ ..+..+..-...|......++..+..++
T Consensus 10 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 72 (123)
T PF02050_consen 10 AQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLE 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566665555544444444 4444444445555555555555555444
No 335
>PF14645 Chibby: Chibby family
Probab=61.64 E-value=18 Score=31.31 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
|.++.+.|+.||.-|+-++..|-.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlD 99 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLD 99 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555433
No 336
>PRK01156 chromosome segregation protein; Provisional
Probab=61.52 E-value=1.7e+02 Score=32.26 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=3.9
Q ss_pred cccccCCC
Q 038341 280 PVLCVDDN 287 (351)
Q Consensus 280 ~~~~~~~~ 287 (351)
++|++|+.
T Consensus 827 ~~lilDEp 834 (895)
T PRK01156 827 SLLIMDEP 834 (895)
T ss_pred CeEEEeCC
Confidence 44555543
No 337
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=61.36 E-value=39 Score=28.78 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.+|.+.++..+.|..-|+..++.+..++..|+.|.+.+|...
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777777777777788888887777777777777777655
No 338
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=61.33 E-value=1.5e+02 Score=28.26 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 038341 117 PKRLRRIESNRVSAQKSRM 135 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~ 135 (351)
-+|+||..+.+.++-.-+-
T Consensus 22 ~~rLR~~E~ek~~~m~~~g 40 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHG 40 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3778877777777655443
No 339
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.25 E-value=6.9 Score=42.32 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=18.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHH
Q 038341 188 NNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 188 Qq~~lkda~~E~Lk~EVqRLR~a 210 (351)
....++..+.+.|++|.++|+..
T Consensus 559 ~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 559 KAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777899999999999976
No 340
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=61.25 E-value=18 Score=26.72 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+..|......|..+|..|+.+|+.|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555566666666655544
No 341
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=61.15 E-value=14 Score=29.02 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTP 160 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~ 160 (351)
.|.+|+.++..|+.||+-|+.
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555443
No 342
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.98 E-value=1.3e+02 Score=27.26 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQLK 218 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~ 218 (351)
..|-.+-.+|.+..-..+=++.-+++ .+.|..+|.+|.++|+.|.++ +..+..|+..+|.- |.+.++
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Q-k~eLE~~k~~L~qqv~~L~~e-------~s~~~~E~da~k~k--~e~l~~ 116 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQ-KHELEKEKAELQQQVEKLKEE-------NSRLRRELDAYKSK--YEALQN 116 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HHHHHh
Confidence 33333444454444444444444433 456777777777777666533 46666677777766 555544
No 343
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.88 E-value=50 Score=30.92 Aligned_cols=25 Identities=4% Similarity=-0.013 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+..|+++...+...|-++..-+..|
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~L 201 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEEL 201 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 344
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=60.83 E-value=12 Score=35.06 Aligned_cols=45 Identities=33% Similarity=0.318 Sum_probs=30.2
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
+-.|.+|..+++ .+..++.+.+|+.+|..|+.++.++...+..|.
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666655555 556667788888888888876666666655543
No 345
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=60.73 E-value=80 Score=24.77 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 151 LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.+..|-.+..++.....++..|..+...|+.++
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444444444444444444443
No 346
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=60.62 E-value=20 Score=31.62 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 153 NQIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 153 ~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
.|...|+.++..|.+++..|..||.-||.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666677777777777777654
No 347
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.42 E-value=90 Score=34.77 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLS 180 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLK 180 (351)
.|++||.+...++.+..++......+++....|..+..+|+
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333
No 348
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=60.37 E-value=80 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.|+..|+..+..++.+...+..++..++.
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 349
>PRK02793 phi X174 lysis protein; Provisional
Probab=60.17 E-value=50 Score=26.24 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
++|.++..|+...+-...-|..|
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~L 27 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEEL 27 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666655555444444444
No 350
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=60.15 E-value=1.4e+02 Score=30.61 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 038341 117 PKRLRRIESNR 127 (351)
Q Consensus 117 pKR~KRiLkNR 127 (351)
+..+++.+++|
T Consensus 11 ~~~v~~~l~~R 21 (418)
T TIGR00414 11 PDLVKESLKAR 21 (418)
T ss_pred HHHHHHHHHhc
Confidence 33444444444
No 351
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=60.10 E-value=1.1e+02 Score=26.15 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 119 RLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 119 R~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
+.+|++-.+..+-.. |+.-+=.-....-.....+..+++.+++++..|..++..|+.++..|+..
T Consensus 22 ~~~~~l~~~l~~~l~------~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 22 RRRRILTLVLLALLA------LFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444444433 33333333333444555666677777777888888888888888777766
No 352
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.06 E-value=1.6e+02 Score=34.47 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+-..+||.++..|..++..+...+..+..+..-|..+...+..++..+
T Consensus 881 ~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 881 QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555544444444444433
No 353
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=60.04 E-value=78 Score=28.83 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.++...|..+..++..-..+++.|..-+..-...-..|..++
T Consensus 57 ~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v 98 (146)
T PF05852_consen 57 CEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRV 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455566666666666666666666553333333334444444
No 354
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=59.96 E-value=69 Score=28.83 Aligned_cols=7 Identities=0% Similarity=-0.192 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 038341 238 STWCPTP 244 (351)
Q Consensus 238 s~f~~~~ 244 (351)
.++|...
T Consensus 133 ~yLF~~~ 139 (155)
T PF06810_consen 133 PYLFEEE 139 (155)
T ss_pred chhccCC
Confidence 4444443
No 355
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.87 E-value=1.3e+02 Score=31.34 Aligned_cols=12 Identities=8% Similarity=0.291 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQ 209 (351)
Q Consensus 198 E~Lk~EVqRLR~ 209 (351)
+.++++++.|+.
T Consensus 155 ~~~~~~l~~l~~ 166 (525)
T TIGR02231 155 RELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 356
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.87 E-value=47 Score=36.69 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
-+.+||.|-+.|+.|++++..+++.|++....-..|...||..|+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 356778888888888888877777777766655555555555553
No 357
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=59.83 E-value=92 Score=31.46 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.|+.....|...+..-..+...|.......|.+|+.|+++ +..++.|++|...+
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqe-------lkr~KsELErsQ~~ 131 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQE-------LKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 3333334444444444555666666777777777777654 46788888887776
No 358
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.79 E-value=1.8e+02 Score=31.01 Aligned_cols=11 Identities=9% Similarity=0.299 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQ 209 (351)
Q Consensus 199 ~Lk~EVqRLR~ 209 (351)
=|++.+..++.
T Consensus 144 Pl~e~l~~f~~ 154 (475)
T PRK10361 144 PLREQLDGFRR 154 (475)
T ss_pred hHHHHHHHHHH
Confidence 34445555543
No 359
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=59.62 E-value=1.8e+02 Score=31.55 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch---hhhhHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI---VFINAEIADNKAEVGRL 207 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~---~lkda~~E~Lk~EVqRL 207 (351)
..-+.+.|.+|..|.........++..+.........+-..++..|+.++.+- ++..+-.+.|.+|++.|
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~L 94 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENL 94 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666655332 33333344555555553
No 360
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=59.43 E-value=1.4e+02 Score=27.21 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 038341 163 SLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 163 ~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
..|..+...|..+|+.|..++..
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444433333
No 361
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.23 E-value=86 Score=24.62 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 038341 196 EIADNKAEVGRLRQ 209 (351)
Q Consensus 196 ~~E~Lk~EVqRLR~ 209 (351)
.++.|++|+..||.
T Consensus 47 ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 47 EIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhc
Confidence 34666677766653
No 362
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=59.20 E-value=50 Score=28.05 Aligned_cols=24 Identities=13% Similarity=-0.037 Sum_probs=11.1
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQ 139 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKq 139 (351)
|-..+...+.|---|.-....+..
T Consensus 28 Di~~Lq~~i~~vtf~~l~~e~~~~ 51 (118)
T PF13815_consen 28 DIDTLQENIENVTFCDLENEDCQH 51 (118)
T ss_pred CHHHHHHHHHhcceeccChhhccC
Confidence 444444455554444444444433
No 363
>PLN02320 seryl-tRNA synthetase
Probab=58.95 E-value=1.1e+02 Score=32.84 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 113 HSMDPKRLRRIESNRVSAQKSRMKK-----LQYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 113 ~~~DpKR~KRiLkNReSAqRSR~RK-----KqYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
...|.|.+| .|.+..+++-.|| ...+.+|..+...+..+...|+++...+
T Consensus 65 ~mlD~k~ir---~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~ 119 (502)
T PLN02320 65 AAIDFKWIR---DNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAV 119 (502)
T ss_pred cccCHHHHH---hCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666555 3444444433333 2334444444444444444444444333
No 364
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.83 E-value=1.5e+02 Score=34.66 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=70.3
Q ss_pred HHHhhHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhh
Q 038341 123 IESNRVSAQKSRMK----KLQY------VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVF 192 (351)
Q Consensus 123 iLkNReSAqRSR~R----KKqY------IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~l 192 (351)
+|+++..|.|.+.- +..| ......+++.|+.|...+..++..++..+......++.|+.+++.++....-
T Consensus 415 rLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 415 RLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888877642 3445 3455667888899999999999999999988888999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 038341 193 INAEIADNKAEVGRLRQL 210 (351)
Q Consensus 193 kda~~E~Lk~EVqRLR~a 210 (351)
+....+.+++|++.++..
T Consensus 495 ~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 495 KNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888766554
No 365
>PRK12705 hypothetical protein; Provisional
Probab=58.81 E-value=1.7e+02 Score=31.37 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=14.5
Q ss_pred CCccHHHHHHHhccccccccccccCCCCc
Q 038341 261 NGESIEEILRLHQHKMKQVPVLCVDDNHN 289 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 289 (351)
.|.||.-+-.+.+ ++ |+|||...
T Consensus 217 eGrNir~~E~~tG-----vd-liiddtp~ 239 (508)
T PRK12705 217 EGRNIRAFEGLTG-----VD-LIIDDTPE 239 (508)
T ss_pred cchhHHHHHHhhC-----Cc-eEecCCcc
Confidence 4667877776666 33 46677654
No 366
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=58.80 E-value=1.2e+02 Score=35.36 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=14.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQY 140 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqY 140 (351)
++++++-.+|.-..+-+.-++..
T Consensus 785 ~~l~~ie~~r~~V~eY~~~~~~~ 807 (1201)
T PF12128_consen 785 KELKRIEERRAEVIEYEDWLQEE 807 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 55556666666666666665553
No 367
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.68 E-value=33 Score=27.33 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
+..|+.+++.++.+...|..++..+.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 368
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=58.68 E-value=57 Score=31.35 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
++|+..-+.|..+.+.|+.+-..|.++...|..|..++
T Consensus 41 ~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~ 78 (228)
T PRK06800 41 EELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQF 78 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 369
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=58.44 E-value=1.1e+02 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=16.3
Q ss_pred HHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 178 SLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 178 eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
.++..|+.+++++-.-+.+...=+.|++.|+
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555444444455555555554
No 370
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.37 E-value=2.2e+02 Score=33.43 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 149 KALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 149 q~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+.|+.|..+|..++..++++...+..+...|+..+..+
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l 855 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNL 855 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 371
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=58.26 E-value=35 Score=37.54 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFI 193 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lk 193 (351)
.+|-.+|..|..|+.-|+-++...++....|...+++|...|..+.+++..+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888887777777777888888777777666554
No 372
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.23 E-value=1.4e+02 Score=31.78 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
+...|..|...+.++++..+.+...|..||..|..
T Consensus 35 q~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 35 QLVILRAESRAIKAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 373
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=58.10 E-value=80 Score=35.60 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=51.6
Q ss_pred HHhhHHHHHHHHHHHHHHHH------HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 124 ESNRVSAQKSRMKKLQYVTD------LEKK------------AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 124 LkNReSAqRSR~RKKqYIeE------LE~k------------Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
|--|++-..+-.|-|.-+++ +|.. ...+...+++|..+|..+-++.+.|..|.+.||..|++
T Consensus 362 leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 362 LEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAA 441 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34466666666666666655 1111 12334456667777777777788888888878777764
Q ss_pred h-h-cchhhhhHHHHHHHHHHHHHHH
Q 038341 186 Y-N-NNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 186 L-e-Qq~~lkda~~E~Lk~EVqRLR~ 209 (351)
- - .+..-+|-.+..|..|-+.|-.
T Consensus 442 ~l~~DeLaEkdE~I~~lm~EGEkLSK 467 (961)
T KOG4673|consen 442 ALLKDELAEKDEIINQLMAEGEKLSK 467 (961)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 2 1 2333355556677777776644
No 374
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=58.04 E-value=75 Score=31.54 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
.+.|+.+...++..+..+++ +..+.....++..|.+.++.+..+..+.....++++.+||.
T Consensus 177 i~~l~~~l~~~~~~~~~~~~-~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~ 237 (264)
T PF07246_consen 177 ISNLTNELSNLRNDIDKFQE-REDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRN 237 (264)
T ss_pred HHHhhhhHHHhhchhhhhhh-hhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444443322322 22333334444444444444444444444444555554443
No 375
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=58.04 E-value=43 Score=34.00 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~ 163 (351)
+|++.|+.++..|+.+..+|.++++
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443
No 376
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=57.99 E-value=58 Score=36.76 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAM 157 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~ 157 (351)
.+..++.+|+|+++.-|+.|..+
T Consensus 52 v~evrRcdemeRklrfl~~ei~k 74 (829)
T KOG2189|consen 52 VNEVRRCDEMERKLRFLESEIKK 74 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555554443
No 377
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.97 E-value=28 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
+.+.+|+.+++.++.++..|..++..|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555444
No 378
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=57.96 E-value=70 Score=30.35 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
..+..||.||..++.....+-..+..-++++..|..+-..||++|.+|+..
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKK 129 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHH
Confidence 456778888888877777666666655667778888888888888888744
No 379
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=57.96 E-value=1.6e+02 Score=33.00 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQ 209 (351)
Q Consensus 199 ~Lk~EVqRLR~ 209 (351)
.|.+|+.+|+.
T Consensus 605 rleEE~e~L~~ 615 (698)
T KOG0978|consen 605 RLEEELERLKR 615 (698)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 380
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=57.44 E-value=99 Score=33.38 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIA 198 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E 198 (351)
.=.+.+..++..|+.+...+.++..++.....+...+..+-..|+.+.+.++....+-+++.+
T Consensus 42 ~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~ 104 (618)
T PF06419_consen 42 PVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLE 104 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567888888999999999999888888888888888888888887777766555555444
No 381
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=57.42 E-value=1.4e+02 Score=30.21 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHH
Q 038341 165 YQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLY 213 (351)
Q Consensus 165 Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~ 213 (351)
|......-..|-..+++||++|..-.---=.++|...+|++.|=..|+.
T Consensus 138 L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l 186 (338)
T KOG3647|consen 138 LGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFL 186 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556667777776632222223467777777766555443
No 382
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.34 E-value=1.6e+02 Score=27.20 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
+..|..++..++.+...|..++..+
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 383
>PRK11546 zraP zinc resistance protein; Provisional
Probab=57.24 E-value=92 Score=28.24 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLRQLHLYQQ 215 (351)
Q Consensus 197 ~E~Lk~EVqRLR~a~i~qQ 215 (351)
+.+|.+||..||.- +|.|
T Consensus 91 I~aL~kEI~~Lr~k-L~e~ 108 (143)
T PRK11546 91 INAVAKEMENLRQS-LDEL 108 (143)
T ss_pred HHHHHHHHHHHHHH-HHHH
Confidence 45666677666664 4444
No 384
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=57.18 E-value=1.2e+02 Score=32.35 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhh
Q 038341 157 MLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQLKMLEQNGLPVWDCGLDEL 235 (351)
Q Consensus 157 ~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~~~~~~a~~~~~~~~~~~ 235 (351)
.+..++..+..+...+..+..+++..|+.|++...--....+.++..+..++.. ... .+.|+.+..|-++
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~-----l~k----~~lpgip~~y~~~ 449 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRY-----LEK----SNLPGLPEDYLEM 449 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----cCCCCCcHHHHHH
Confidence 344555555555556666666666666666544333222333444444333322 111 2345666666544
No 385
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=57.04 E-value=1.4e+02 Score=26.51 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
-+..|+.+|..|..|-..=..+++.+-..++.|..+++.|+.-|..|+
T Consensus 15 ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 15 EVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred HHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 456677777777776666566677777777777777777777776665
No 386
>PRK14127 cell division protein GpsB; Provisional
Probab=57.03 E-value=26 Score=30.33 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhhhcc
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQ-------------KEQRSLSERMTTYNNN 189 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~-------------~EN~eLKqrLqsLeQq 189 (351)
++.|..++..|+.++..|..++..++.+..... .-|-.+-.||..|+++
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~ 100 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHH
Confidence 344555555555666666666555555444332 2344555666666654
No 387
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=56.95 E-value=90 Score=32.96 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
+.............+..|+.....|..|....|..|..+.+...........|..|+.++|.
T Consensus 290 Le~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 290 LEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 33333333334444444555555555555555555555555555555555556655555544
No 388
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=56.92 E-value=12 Score=27.54 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=9.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv 162 (351)
++..||+=|+..-.... -|.+||.++..|..||-.|+.++
T Consensus 5 ~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 5 YSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 34444444443333322 25566666666666666666544
No 389
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=56.50 E-value=1.7e+02 Score=34.58 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
..|..-+.++.+ +.++..++..++.+...+..++..++++...|..+..+|+.++..|...
T Consensus 266 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~ 326 (1353)
T TIGR02680 266 RRATRLRSAQTQ-YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS 326 (1353)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333433333 2455555666666666666666666666666666666666655555533
No 390
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.47 E-value=41 Score=29.95 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
..|..++.|+.|...=-.++..|+++...+...|..|..|
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444444444444444444444444444443
No 391
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=56.27 E-value=95 Score=29.23 Aligned_cols=70 Identities=7% Similarity=0.128 Sum_probs=0.0
Q ss_pred hHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHH
Q 038341 127 RVSAQKSRMK-KLQ-------YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAE 196 (351)
Q Consensus 127 ReSAqRSR~R-KKq-------YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~ 196 (351)
+..|.+.... |+. =+..|-.-...+..||..|+.++..+.+++..|...+..|..+-+.|.++.-+.+++
T Consensus 129 ~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e~L 206 (206)
T PF14988_consen 129 LQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLESL 206 (206)
T ss_pred HHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 392
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.12 E-value=2.8e+02 Score=29.76 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
+..+..||..+..|....+.|+.....|.
T Consensus 303 qmr~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 303 QMRDQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433
No 393
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.08 E-value=1.5e+02 Score=33.05 Aligned_cols=9 Identities=22% Similarity=-0.019 Sum_probs=4.9
Q ss_pred CCCCCcccc
Q 038341 244 PGPGQMVYA 252 (351)
Q Consensus 244 ~~p~q~~~~ 252 (351)
..+|..|+.
T Consensus 637 ~~~Gd~V~v 645 (782)
T PRK00409 637 LKVGDEVKY 645 (782)
T ss_pred CCCCCEEEE
Confidence 455665553
No 394
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.95 E-value=72 Score=26.83 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 138 LQYVTDLEKKAKALENQI-AMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~EN-s~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
-+|-..=|.+|..|..-- .....++..|+.++..|..||..|+.+|+...
T Consensus 26 ~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 26 ALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666788888886322 34778888888888889999888888886654
No 395
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.94 E-value=99 Score=33.08 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
++|.+++-.++..|+.+...+.+....+.+....|.+..+.+..++
T Consensus 353 k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 353 KQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555555554444444444444333333333
No 396
>PF15058 Speriolin_N: Speriolin N terminus
Probab=55.92 E-value=23 Score=33.72 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
+-|..+++.|-.||++|+++|.. ..||.+||.-|
T Consensus 8 eGlrhqierLv~ENeeLKKlVrL--------irEN~eLksaL 41 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRL--------IRENHELKSAL 41 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHHH
Confidence 55667788888999999998854 45677777654
No 397
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.82 E-value=1.9e+02 Score=33.87 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=31.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv 162 (351)
+.++-+-+++.+-.+....|..++..||+++..|+..+..++.+.
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~ 225 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE 225 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566777777777888888888888777777776655543
No 398
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=55.82 E-value=57 Score=25.44 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+++.++..++.....+..++..++.....+..+-..+..+|..++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555444
No 399
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=55.82 E-value=21 Score=32.96 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQLHLYQQQL 217 (351)
Q Consensus 198 E~Lk~EVqRLR~a~i~qQqq 217 (351)
.+|+.|+.-||+=+|.|+.+
T Consensus 34 QRLkDE~RDLKqEl~V~ek~ 53 (166)
T PF04880_consen 34 QRLKDELRDLKQELIVQEKL 53 (166)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45666666666655555543
No 400
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.81 E-value=3.6e+02 Score=32.38 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 161 QVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 161 qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
++.....+...|..+++.|+..++.+
T Consensus 502 k~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 502 KLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 401
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=55.75 E-value=73 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.|..+...-...+..++++++.|..-|+.|..|+
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV 63 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRV 63 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444445555555555555555555
No 402
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=55.69 E-value=2.3e+02 Score=32.02 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cchhhhhHHHHHHHHHHHHHHH
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN----NNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe----Qq~~lkda~~E~Lk~EVqRLR~ 209 (351)
=.-|-.+|++|..+.+.|....+.-..++..+.-....|..|-..+++...... .+.--+....+.|..||+.+|.
T Consensus 603 vEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~ 682 (786)
T PF05483_consen 603 VENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKL 682 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777777777666666544432 3333344455688999999988
Q ss_pred H
Q 038341 210 L 210 (351)
Q Consensus 210 a 210 (351)
.
T Consensus 683 ~ 683 (786)
T PF05483_consen 683 T 683 (786)
T ss_pred H
Confidence 7
No 403
>PHA03011 hypothetical protein; Provisional
Probab=55.61 E-value=62 Score=28.37 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
...+.....+|.+|-..|..+...+..|-+.|.+-++. .+-++--|+.|+.|||..
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQd-------n~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQD-------NDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555444433 344455677777777753
No 404
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=55.53 E-value=1.1e+02 Score=32.56 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
.++..+.+++..|..|..++..|.+.
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444444444433
No 405
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.03 E-value=1e+02 Score=34.04 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNM-------QEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQL 217 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q-------~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq 217 (351)
|..|+.|+.|+..|..++....++ --.|..|...|+++++.|+ ++++.++.|+..++.+ |.|.+
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEle-------aeyd~~R~Eldqtkea--l~q~~ 77 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELE-------AEYDLARTELDQTKEA--LGQYR 77 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--HHHHH
Confidence 455666666666666666555433 2345567788888888874 6788999999999988 76664
Q ss_pred Hh
Q 038341 218 KM 219 (351)
Q Consensus 218 ~~ 219 (351)
..
T Consensus 78 s~ 79 (772)
T KOG0999|consen 78 SQ 79 (772)
T ss_pred HH
Confidence 43
No 406
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.74 E-value=1.8e+02 Score=32.56 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKE 175 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E 175 (351)
|++||++...++.+..++......+++....|..+
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~ 551 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQE 551 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333333333333333333333333333
No 407
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=54.73 E-value=91 Score=31.78 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQ-----------IAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~E-----------Ns~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
-++.|+++++|...-..=+||...+..=+..+.+|..- ..-...+|.+|+.+...|..+..+++.+|+.
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666899999998888888866555545555555421 0011245555555555555555555555544
Q ss_pred hh
Q 038341 186 YN 187 (351)
Q Consensus 186 Le 187 (351)
+.
T Consensus 201 ~~ 202 (323)
T PF08537_consen 201 TK 202 (323)
T ss_pred HH
Confidence 43
No 408
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.65 E-value=1.7e+02 Score=26.72 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 127 RVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSL 164 (351)
Q Consensus 127 ReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~ 164 (351)
-..|+++-.+-...-..||+++..++.+...+..+...
T Consensus 39 l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~ 76 (221)
T PF04012_consen 39 LRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAEL 76 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555554444433
No 409
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.65 E-value=1.3e+02 Score=30.68 Aligned_cols=71 Identities=8% Similarity=0.122 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHhhhhcc-hhhhhHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNM----QEFLQKEQRS---LSERMTTYNNN-IVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q----~~~L~~EN~e---LKqrLqsLeQq-~~lkda~~E~Lk~EVqRLR~a 210 (351)
-.++|+.+.+.|+........+++.+..- ...+..+.+. |+..|+.++.. ........+.|+++|.+.+..
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 34677777777777776666665554322 2333333333 33444444322 222344567788888776655
No 410
>PRK04325 hypothetical protein; Provisional
Probab=54.60 E-value=63 Score=25.82 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
..+|.++..|+...+-+..-|..|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~L 28 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGL 28 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444433333
No 411
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.58 E-value=2.5e+02 Score=28.63 Aligned_cols=20 Identities=5% Similarity=-0.032 Sum_probs=8.3
Q ss_pred hhhcchhhhhHHHHHHHHHH
Q 038341 185 TYNNNIVFINAEIADNKAEV 204 (351)
Q Consensus 185 sLeQq~~lkda~~E~Lk~EV 204 (351)
.|+.+.......++.|.+-.
T Consensus 359 ~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 359 QLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 412
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=54.14 E-value=1e+02 Score=28.87 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
++|++|+.+-+.+.+.++.+..+|..++...
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655555555555555555444433
No 413
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=54.08 E-value=2.3e+02 Score=32.32 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhcchhhhhHHHHHHHHHHH
Q 038341 163 SLYQNMQEFLQKEQRSLSERMTT----YNNNIVFINAEIADNKAEVG 205 (351)
Q Consensus 163 ~~Lq~q~~~L~~EN~eLKqrLqs----LeQq~~lkda~~E~Lk~EVq 205 (351)
+.|.+-+..+..||+.|..-+.. |-+..+..|.+..+++-||.
T Consensus 458 eellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~ 504 (861)
T PF15254_consen 458 EELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVE 504 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333344444555555444332 22333444555566666664
No 414
>PHA03155 hypothetical protein; Provisional
Probab=54.04 E-value=17 Score=32.00 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv 162 (351)
+++|+.+++.|+.||..|+.++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766666666666655
No 415
>PRK00295 hypothetical protein; Provisional
Probab=54.02 E-value=67 Score=25.25 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
+|.++..|+...+-+..-|..|
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~L 24 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQAL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544444444333333
No 416
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=53.54 E-value=1.1e+02 Score=29.36 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNK 201 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk 201 (351)
..-+..||..+..++.+...+...+..|+.....|.....+|+.+...+........+....-+
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~ 154 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNR 154 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 417
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=53.34 E-value=1.4e+02 Score=28.29 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+..||..+..|..+...|..++.........+...-.....+-+.|
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L 92 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDL 92 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666555555555554444444444443
No 418
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=53.25 E-value=4.4 Score=43.74 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhh
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEF---LQKEQRSLSERMTTYN 187 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~---L~~EN~eLKqrLqsLe 187 (351)
++....=++|.+=+.+|.++|+.|+..|..|..+...|..+... +..+...||.+|..|+
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe 376 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELE 376 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333444688888999999999999888877777776554332 3344444444444444
No 419
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=53.25 E-value=68 Score=31.42 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 169 QEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 169 ~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
...+..||++||.+++.+++. ....+.|++|-+|||.+
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 68 LKDLALENEELKKELAELEQL----LEEVESLEEENKRLKEL 105 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 344667777777777666543 33457888999999988
No 420
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=53.16 E-value=1.3e+02 Score=31.63 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
|+++.+|..+-..-+..|+.|-..|..|+++-..+......+...|
T Consensus 127 Re~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl 172 (561)
T KOG1103|consen 127 REAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKL 172 (561)
T ss_pred HHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555567788888888888877655544444444333
No 421
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=53.16 E-value=1.9e+02 Score=26.82 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhh
Q 038341 117 PKRLRRIESNRVSAQKSRM----KKLQ-YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQK----EQRSLSERMTTYN 187 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~----RKKq-YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~----EN~eLKqrLqsLe 187 (351)
-.|.|+-++-++.|+.+|. |.+. --++||.-+.=...|+..++.++....++..-|.. .-+++|.-|+++.
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777888888874 2222 33567776666777888888888887777665543 3467888888887
Q ss_pred cchhhhhHHHHHHH---HHHHHHHH
Q 038341 188 NNIVFINAEIADNK---AEVGRLRQ 209 (351)
Q Consensus 188 Qq~~lkda~~E~Lk---~EVqRLR~ 209 (351)
....-+..+...|. .|-++||.
T Consensus 123 EknkeK~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 123 EKNKEKAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665443 34444443
No 422
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.94 E-value=1.6e+02 Score=25.79 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=40.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--chhhhh
Q 038341 124 ESNRVSAQKSRMKKLQYVTDLE-------KKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN--NIVFIN 194 (351)
Q Consensus 124 LkNReSAqRSR~RKKqYIeELE-------~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ--q~~lkd 194 (351)
+..-+.|.+.-.+|+.-++.|+ .+|..|+.++..+..++..+....... +..++..+..+.+ ..-++.
T Consensus 116 ~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~~~dlk~ 192 (218)
T cd07596 116 LLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEERARDLKA 192 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555554 255566666666666655555444433 3445555555542 233444
Q ss_pred HHHHHHHHHHH
Q 038341 195 AEIADNKAEVG 205 (351)
Q Consensus 195 a~~E~Lk~EVq 205 (351)
++..-+...|.
T Consensus 193 ~l~~~~~~qi~ 203 (218)
T cd07596 193 ALKEFARLQVQ 203 (218)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 423
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=52.92 E-value=99 Score=28.60 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
=|+=.|+++..|+.+|..|+.+++.|-. ...+|..+-.++..+.
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4677788888888888888888877644 4556777766666655
No 424
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=52.68 E-value=40 Score=25.84 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
....++..|+.||..|++++..+
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666555544
No 425
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.65 E-value=1.8e+02 Score=26.30 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=33.9
Q ss_pred HHHHHHHhhHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 119 RLRRIESNRVS-------AQKSRMKKLQYVTDLEKK-------AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 119 R~KRiLkNReS-------AqRSR~RKKqYIeELE~k-------Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
-+|-++.+|.. |...-.||+.-++.|... +..++.++.++..++..++.+..... ..+|..++
T Consensus 122 svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~ 198 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELE 198 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 44555555544 455555555555555433 45555555555555555555544443 33445554
Q ss_pred hhh
Q 038341 185 TYN 187 (351)
Q Consensus 185 sLe 187 (351)
.+.
T Consensus 199 rf~ 201 (236)
T PF09325_consen 199 RFE 201 (236)
T ss_pred HHH
Confidence 444
No 426
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=52.58 E-value=73 Score=34.35 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 038341 202 AEVGRLR 208 (351)
Q Consensus 202 ~EVqRLR 208 (351)
+||+.||
T Consensus 508 eeI~~LK 514 (518)
T PF10212_consen 508 EEIQTLK 514 (518)
T ss_pred HHHHHHh
Confidence 3333333
No 427
>PHA03011 hypothetical protein; Provisional
Probab=52.55 E-value=77 Score=27.80 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 038341 167 NMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 167 ~q~~~L~~EN~eLKqrLq 184 (351)
.+.+.|+.|-..||..++
T Consensus 99 d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 99 DEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444443
No 428
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=52.46 E-value=93 Score=29.62 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEF 171 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~ 171 (351)
..|+..+..++.+...+..++...+.+...
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~ 126 (334)
T TIGR00998 97 KQLEITVQQLQAKVESLKIKLEQAREKLLQ 126 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666655566555555544433
No 429
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=52.45 E-value=55 Score=33.43 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
+...|...+..|..++..++.++..|..+...++.++ +.+++|+.+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 64 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKREL--------------IRAKEEVKRIQS 64 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhC
No 430
>PRK00846 hypothetical protein; Provisional
Probab=52.35 E-value=79 Score=25.91 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
.++|.++..|+...+-...-+..|
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~L 32 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTEL 32 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444433333
No 431
>PF14645 Chibby: Chibby family
Probab=52.21 E-value=57 Score=28.24 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 038341 166 QNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 166 q~q~~~L~~EN~eLKqrLqsL 186 (351)
++++..|..||+-||.+++.|
T Consensus 77 ~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 77 RKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555444
No 432
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=52.16 E-value=50 Score=25.84 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
++||+.++..|+.|+..++..+..-..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999888887765433
No 433
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.89 E-value=3.4e+02 Score=29.52 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038341 194 NAEIADNKAEVGRLRQL 210 (351)
Q Consensus 194 da~~E~Lk~EVqRLR~a 210 (351)
+..+..|+.|++-.+.+
T Consensus 375 ~~e~~~L~Re~~~~~~~ 391 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQL 391 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556777777776666
No 434
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=51.69 E-value=44 Score=35.60 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQ------NMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq------~q~~~L~~EN~eLKqrLqsLe 187 (351)
++.||.++..|+.+..+|..++..-. .....|..|-.+++.+|+.+.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAF 622 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888877777777777764321 134445555555555554443
No 435
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=51.65 E-value=31 Score=30.66 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqR 206 (351)
-||+|+..+......|+.++..+.........+-..++..++.++....-+|..+++-..|...
T Consensus 34 ~L~rKia~~~~~~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~ak~~em~e 97 (121)
T PF12507_consen 34 LLERKIADQNFKILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEAKRKEMKE 97 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhhhhcchHH
Confidence 4666777777777778888888888777777777777777777766666666666655555543
No 436
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=51.59 E-value=56 Score=25.19 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQ-NMQEFLQKEQRSLSERM 183 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq-~q~~~L~~EN~eLKqrL 183 (351)
-|+..|.++|..+.........|..++..+. .....+...-+.+|..|
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665555442 22333333333344333
No 437
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=51.55 E-value=20 Score=31.55 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~ 163 (351)
-+++|+.+++.|+.||..|+.+|.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666555555555553
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.33 E-value=2.3e+02 Score=31.44 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
..+.+.+++.+.+.++.....|..++.......+.|+.--+.|.++
T Consensus 600 QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 600 QLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3445677777777777777777777777766666666665555554
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.29 E-value=3e+02 Score=30.73 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
+++++|+.|+.+...-..++..++++...|...-..|..|++
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333333333333
No 440
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=51.25 E-value=48 Score=30.65 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHH
Q 038341 161 QVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIAD 199 (351)
Q Consensus 161 qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~ 199 (351)
-|+..+++...|+.+|++|+.+|+.|...+.-.+.+.+.
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~ 79 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQR 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888887666555554443
No 441
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=51.13 E-value=2.2e+02 Score=26.82 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 196 EIADNKAEVGRLRQL 210 (351)
Q Consensus 196 ~~E~Lk~EVqRLR~a 210 (351)
.+..|..++...+.-
T Consensus 205 ~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 205 EIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 442
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.07 E-value=1.5e+02 Score=28.17 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+..|+..+..|..+..........+......+...=+.|...|..+
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l 99 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNL 99 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777666666666555555554444544444443
No 443
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=50.99 E-value=2.3e+02 Score=30.48 Aligned_cols=87 Identities=22% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------
Q 038341 119 RLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAM-LTPQVSLYQNMQEFLQKEQRSLSERMTTYN---------- 187 (351)
Q Consensus 119 R~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~-Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe---------- 187 (351)
|+-|+|+.|+.--.+ |+--++.|.+..-+|++.... -.+=+..|-+..+.|..|.+-|..+++.=.
T Consensus 162 Klm~ki~Klen~t~~---kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia 238 (552)
T KOG2129|consen 162 KLMNKIRKLENKTLL---KQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIA 238 (552)
T ss_pred HHHHHHHHhhhhhHH---hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhh
Q ss_pred -------cchhhhhHHHHHHHHHHHHHH
Q 038341 188 -------NNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 188 -------Qq~~lkda~~E~Lk~EVqRLR 208 (351)
..+.--.+++..|+.||+|||
T Consensus 239 ~~~~~~gD~a~~~~~hi~~l~~EveRlr 266 (552)
T KOG2129|consen 239 KIPDVHGDEAAAEKLHIDKLQAEVERLR 266 (552)
T ss_pred cCccccCchHHHHHHHHHHHHHHHHHHH
No 444
>PRK12705 hypothetical protein; Provisional
Probab=50.98 E-value=3.5e+02 Score=29.14 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
+.|+++...|......|..+-..+..+...|.....++..+|+
T Consensus 91 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le 133 (508)
T PRK12705 91 EQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELY 133 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444444444433333333333
No 445
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.74 E-value=99 Score=33.50 Aligned_cols=11 Identities=45% Similarity=0.443 Sum_probs=7.7
Q ss_pred CCCHHHHHHHH
Q 038341 114 SMDPKRLRRIE 124 (351)
Q Consensus 114 ~~DpKR~KRiL 124 (351)
..||++..++.
T Consensus 163 ~~dP~~Aa~ia 173 (754)
T TIGR01005 163 SEDPKLAAAIP 173 (754)
T ss_pred cCCHHHHHHHH
Confidence 45788887665
No 446
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.71 E-value=76 Score=36.36 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhh---cchhhhhHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQ-----------EFLQKEQRSLSERMTTYN---NNIVFINAEIADNKAEV 204 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~-----------~~L~~EN~eLKqrLqsLe---Qq~~lkda~~E~Lk~EV 204 (351)
.-..+||.++..++.|-..|..++..+.... ..|..+-..||..+.+.. ....-.+.....|..||
T Consensus 509 ~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei 588 (913)
T KOG0244|consen 509 SDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEI 588 (913)
T ss_pred hhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHH
Confidence 3356788888888888888888888776532 233333333333333221 11111122334788899
Q ss_pred HHHHHH
Q 038341 205 GRLRQL 210 (351)
Q Consensus 205 qRLR~a 210 (351)
.+++..
T Consensus 589 ~~~k~~ 594 (913)
T KOG0244|consen 589 HIAKGQ 594 (913)
T ss_pred HHHHHH
Confidence 888876
No 447
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=50.61 E-value=3e+02 Score=32.74 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
..|.+....-++++++++..+...+.+...+..++..+..+
T Consensus 871 ~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~ 911 (1353)
T TIGR02680 871 RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLR 911 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555554444333
No 448
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=50.44 E-value=25 Score=31.04 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
++.|..+...|.+||+.||.+|..-.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45666777889999999999997654
No 449
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=50.33 E-value=1e+02 Score=31.06 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-------HHhhhh-------cchhhhhHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQV-----SLYQNMQEFLQKEQRSLSE-------RMTTYN-------NNIVFINAEIADNKA 202 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv-----~~Lq~q~~~L~~EN~eLKq-------rLqsLe-------Qq~~lkda~~E~Lk~ 202 (351)
..|-.|+..|..||.+|-.+. ..|.-+...-...+.+||. -|+.|. ...++-.-..+.-++
T Consensus 213 K~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~ 292 (330)
T KOG2991|consen 213 KMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRK 292 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 457788888888887765442 2233332222233333333 333322 333333333445567
Q ss_pred HHHHHHHH
Q 038341 203 EVGRLRQL 210 (351)
Q Consensus 203 EVqRLR~a 210 (351)
||+||+.-
T Consensus 293 ~Iq~l~k~ 300 (330)
T KOG2991|consen 293 EIQRLKKG 300 (330)
T ss_pred HHHHHHHH
Confidence 77777775
No 450
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=50.23 E-value=2.2e+02 Score=26.65 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 151 LENQIAMLTPQVSLY 165 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~L 165 (351)
|++|...|..++.++
T Consensus 155 l~ae~~~l~~~~~~l 169 (240)
T PF12795_consen 155 LQAELAALEAQIEML 169 (240)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 451
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=50.23 E-value=1.1e+02 Score=35.12 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINA 195 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda 195 (351)
+..|..|..++..|+.|...|...++-++.+...-.+|..++..++..++++.-.+..
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 4445555556666666666666666666666666666666666666666555433333
No 452
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.22 E-value=66 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
..|+.+++.++.+...|..++..+..+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~ 92 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEK 92 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 453
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.22 E-value=1.7e+02 Score=25.32 Aligned_cols=40 Identities=25% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
|-.-|-.-+..+..|+.++..-......+..|+..|.-|-
T Consensus 17 LKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN 56 (102)
T PF10205_consen 17 LKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRN 56 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555555554443
No 454
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=50.16 E-value=69 Score=24.93 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
....+..++.+++.++.||.+|..++..|
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666555544
No 455
>PRK00736 hypothetical protein; Provisional
Probab=49.39 E-value=88 Score=24.61 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQ 161 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~q 161 (351)
+|.++..|+...+-+..-
T Consensus 3 ~e~Ri~~LE~klafqe~t 20 (68)
T PRK00736 3 AEERLTELEIRVAEQEKT 20 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445554444444433333
No 456
>COG5570 Uncharacterized small protein [Function unknown]
Probab=49.36 E-value=40 Score=26.32 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQ 209 (351)
Q Consensus 199 ~Lk~EVqRLR~ 209 (351)
+|++||++||.
T Consensus 44 ~lKeeIEkLka 54 (57)
T COG5570 44 RLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHhc
Confidence 67777887775
No 457
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=49.25 E-value=75 Score=27.98 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
++=.+|..|+.....|.+++..+.+....|..||..|+...+-|
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~L 48 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKL 48 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Confidence 34456777888888888888888888888888888876654333
No 458
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.14 E-value=3.3e+02 Score=29.89 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLRQLH 211 (351)
Q Consensus 197 ~E~Lk~EVqRLR~a~ 211 (351)
+..|++|++-.|.+|
T Consensus 372 ~~~L~R~~~~~~~lY 386 (726)
T PRK09841 372 VLRLSRDVEAGRAVY 386 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 336677776667663
No 459
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=49.13 E-value=2.1e+02 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKA---LENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 137 KKqYIeELE~kVq~---Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
+..|+..+++++.. ++.....|..++..+.++...+.
T Consensus 166 r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~ 205 (247)
T PF14661_consen 166 RNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQ 205 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554 54455445555444444444443
No 460
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=49.11 E-value=3e+02 Score=31.41 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
|.-=-++|..||+||+.+..|-..|+.++..|.
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk 436 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLK 436 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444456778888888888888777777776543
No 461
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=49.00 E-value=40 Score=32.59 Aligned_cols=53 Identities=26% Similarity=0.271 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.|+++||..|+.+.... +...+.|..||..|+.||+.|+... + -.++++++..
T Consensus 101 ~kA~~~i~~l~~~~~~~--------------~~~~e~l~~e~~~l~~rl~ql~~~~-------s--~a~~~~~~~~ 153 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQ--------------QQDIEDLSRENRKLKARLEQLSLPQ-------S--PASSEAIRLD 153 (232)
T ss_pred hhHHHHHHHHHhHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcCcc-------c--cchhhhhhcc
Confidence 45666777777666544 3444566777888888887776332 1 4456666665
No 462
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=48.98 E-value=32 Score=36.54 Aligned_cols=46 Identities=9% Similarity=0.241 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 132 KSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 132 RSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
|-+.|+|+--.|=.+|.+.+ +..|+.....-.+||++|+++++.|+
T Consensus 254 RRKIrNK~SAQESRrkKkeY----------id~LE~rv~~~taeNqeL~kkV~~Le 299 (472)
T KOG0709|consen 254 RRKIRNKRSAQESRRKKKEY----------IDGLESRVSAFTAENQELQKKVEELE 299 (472)
T ss_pred HHHHHhhhhhHHHHHhHhhH----------HHHHhhhhhhcccCcHHHHHHHHHHh
Confidence 33455555555555544333 34455555666677777777776665
No 463
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.93 E-value=1.7e+02 Score=31.17 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhh
Q 038341 157 MLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQLKMLEQNGLPVWDCGLDELM 236 (351)
Q Consensus 157 ~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~~~~~~a~~~~~~~~~~~~ 236 (351)
.+...+..+..+...+..+..++...|+.|.++..--......++.++..++.. ..+ -..|+.|..|.+++
T Consensus 376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~-----lek----~nLPGlp~~y~~~~ 446 (560)
T PF06160_consen 376 EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRR-----LEK----SNLPGLPEDYLDYF 446 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----cCCCCCCHHHHHHH
Confidence 345555555566666666666666666666655544444444455444443332 222 24677777776553
No 464
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.83 E-value=2.5e+02 Score=27.70 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 131 QKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 131 qRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
.++-.-+.+|+..|-+..+.++.-...|..-...+.+.+. |..|...+..+| +|+..-.....|+|++-+|-|+
T Consensus 40 ~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~ne-L~~ek~~~q~~i---eqeik~~q~elEvl~~n~Q~lk 113 (246)
T KOG4657|consen 40 RRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNE-LKTEKEARQMGI---EQEIKATQSELEVLRRNLQLLK 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 465
>PRK14160 heat shock protein GrpE; Provisional
Probab=48.76 E-value=70 Score=30.56 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
+..|+.++..|+.++..|..++..+..+...+.++...+|.|.+.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777788887777777643
No 466
>PHA03162 hypothetical protein; Provisional
Probab=48.73 E-value=22 Score=32.03 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv 162 (351)
|..-+++|+.++..|+.||..|+.+|
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888888888877777777776
No 467
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.50 E-value=1.8e+02 Score=32.69 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLRQL 210 (351)
Q Consensus 197 ~E~Lk~EVqRLR~a 210 (351)
|=.|.+.|--||+.
T Consensus 106 NislQKqvs~Lk~s 119 (717)
T PF09730_consen 106 NISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHh
Confidence 33667777667665
No 468
>PHA03155 hypothetical protein; Provisional
Probab=48.14 E-value=24 Score=31.11 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
++.|..+...|.+||+.||.+|-.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666778899999999999954
No 469
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=48.02 E-value=1.6e+02 Score=28.16 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQL 210 (351)
Q Consensus 199 ~Lk~EVqRLR~a 210 (351)
.|..|+..||..
T Consensus 91 ~le~El~~Lr~~ 102 (202)
T PF06818_consen 91 QLEAELAELREE 102 (202)
T ss_pred hhHHHHHHHHHH
Confidence 344455555554
No 470
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.02 E-value=1.1e+02 Score=32.99 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+-+++++.+|+.|+..+-.=-..+....++...|..|-+..++.+.++
T Consensus 191 ~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544311101122233334444444444444444443
No 471
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.01 E-value=77 Score=25.91 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 160 PQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 160 ~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.++..|++.-..|..+|..|+.+|
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444443
No 472
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.96 E-value=4.6e+02 Score=29.64 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
.|-.+...++|++...+.+-...+...+..++.+
T Consensus 140 ~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e 173 (716)
T KOG4593|consen 140 KKELELLREKEDKLAELGTLRNKLDSSLSELQWE 173 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433
No 473
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.83 E-value=2.8e+02 Score=27.23 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
-+.-|+.++..++.+..+...++..++++
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666555555543
No 474
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=47.70 E-value=3.7e+02 Score=28.55 Aligned_cols=38 Identities=11% Similarity=0.260 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhcch------hhhhHH--HHHHHHHHHHHHHH
Q 038341 173 QKEQRSLSERMTTYNNNI------VFINAE--IADNKAEVGRLRQL 210 (351)
Q Consensus 173 ~~EN~eLKqrLqsLeQq~------~lkda~--~E~Lk~EVqRLR~a 210 (351)
..|.-.||+.|+.++... ..||.. .|.++..|-+|..+
T Consensus 323 QnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~ 368 (455)
T KOG3850|consen 323 QNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQ 368 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777776332 222221 35677777777776
No 475
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.62 E-value=96 Score=24.18 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQK 174 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~ 174 (351)
++..|..++.+|..++..|..+...|..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444333333
No 476
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.60 E-value=2.1e+02 Score=33.55 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=10.5
Q ss_pred HHHhhHHHHHHHH-HHHHHHHHHHHHHH
Q 038341 123 IESNRVSAQKSRM-KKLQYVTDLEKKAK 149 (351)
Q Consensus 123 iLkNReSAqRSR~-RKKqYIeELE~kVq 149 (351)
.+.+|.+-.|-++ .|+.|-.+||....
T Consensus 644 ~~~~~~~~~r~lee~~~k~~k~le~~~~ 671 (1072)
T KOG0979|consen 644 EIDIRSSTLRELEEKKQKERKELEEEQK 671 (1072)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443322 23334444444333
No 477
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.54 E-value=1.8e+02 Score=34.19 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=36.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 125 SNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 125 kNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+|+.+-+.+-..-.....+||.+++.+.....++..+...|......+...-.+++..+..|+
T Consensus 388 ~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~ 450 (1141)
T KOG0018|consen 388 RNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLE 450 (1141)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 334444444444455556666666666666666666666555555555555556666655555
No 478
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=47.47 E-value=72 Score=29.96 Aligned_cols=47 Identities=28% Similarity=0.329 Sum_probs=27.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 123 IESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQ 169 (351)
Q Consensus 123 iLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~ 169 (351)
|++-|.++..-|.|=+.|..+||.+=..|....+-.+.||+.|++.+
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~ 164 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKN 164 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666555555555555554443
No 479
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=47.43 E-value=42 Score=35.69 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHH---------HHHHHHHHHHHHH
Q 038341 158 LTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEI---------ADNKAEVGRLRQL 210 (351)
Q Consensus 158 Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~---------E~Lk~EVqRLR~a 210 (351)
+=+-+..||.+-+.++.||=.|+++|+.++|+ +..+++ .+|++|+..-|.+
T Consensus 69 IPalL~~lQdEWDavML~~F~LRqqL~ttrQE--LShaLYqhDAAcrViaRL~kE~~earea 128 (506)
T KOG0289|consen 69 IPALLKTLQDEWDAVMLESFTLRQQLQTTRQE--LSHALYQHDAACRVIARLTKERDEAREA 128 (506)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44456788889999999999999999998876 444544 4899999888877
No 480
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=47.40 E-value=4e+02 Score=30.24 Aligned_cols=62 Identities=11% Similarity=0.222 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
++.++.++..-..|...|..++.. +..+...++.+|+.|.....-++...+.|..+|.+||.
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~-------~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~ 350 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLET-------LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRF 350 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444544444444444444444444 44444455555555554444445555566666655553
No 481
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=47.36 E-value=1.3e+02 Score=32.38 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQ 169 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~ 169 (351)
...++.+++.|+.+...|..++..++.+.
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556677777777777777777776654
No 482
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=47.32 E-value=1.6e+02 Score=27.10 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
.+.++++++.|+.|.--=+.|-.-..+|-.+++..+..+.++..+|+.+..+
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888877777777778888888777777777777666665443
No 483
>PHA03162 hypothetical protein; Provisional
Probab=47.19 E-value=14 Score=33.21 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
++.|..+...|.+||+.||.+|-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777889999999999993
No 484
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=47.17 E-value=3.2e+02 Score=30.83 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINA 195 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda 195 (351)
+.+|.+-+|+ +-|.|--.-+-.|..+--.+......|..+|+.|+.+...-..|...|...|+.-..+..+-..
T Consensus 300 ~~~K~q~LL~------~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv 373 (739)
T PF07111_consen 300 FSRKCQQLLS------RWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERV 373 (739)
T ss_pred hHHHHHHHHH------HHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3555554443 2234444444455555555556666777788888777777777777777766665555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 196 EIADNKAEVGRLRQLHLYQQQLK 218 (351)
Q Consensus 196 ~~E~Lk~EVqRLR~a~i~qQqq~ 218 (351)
..+.|..|+.+-..+....|++.
T Consensus 374 ~sktLQ~ELsrAqea~~~lqqq~ 396 (739)
T PF07111_consen 374 GSKTLQAELSRAQEARRRLQQQT 396 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777666644444443
No 485
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=46.99 E-value=1.7e+02 Score=26.82 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038341 194 NAEIADNKAEVGRLRQL 210 (351)
Q Consensus 194 da~~E~Lk~EVqRLR~a 210 (351)
++-++...+.+.+|+..
T Consensus 120 ~a~id~~~er~~~l~r~ 136 (158)
T PF09486_consen 120 DARIDVCRERIDRLRRA 136 (158)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34445666666666654
No 486
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=46.96 E-value=62 Score=31.69 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 133 SRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 133 SR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
...-+..+..+|..+-+.|+.++.++... ..+...|+.||+.||.-|..
T Consensus 60 ~~~~~~~~~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 60 GVLEFLKSLKDLALENEELKKELAELEQL----LEEVESLEEENKRLKELLDF 108 (284)
T ss_pred hHHHHHHHhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC
Confidence 33445555566666666666555554433 34456788888888876643
No 487
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.94 E-value=1.1e+02 Score=26.18 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 126 NRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 126 NReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
||++++..++-+..|-..|..+. |+..|.+++..+..+......+..++
T Consensus 58 NRq~~~dr~ra~~D~~inl~ae~-----ei~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 58 NRQAARDRLRAELDYQINLKAEQ-----EIERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred hHhHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHhHHHHHHHHHh
No 488
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.85 E-value=3.4e+02 Score=27.81 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEI 197 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~ 197 (351)
+..+.-+..-..-.+.-..|.. .++...+..+++.-..|-.++..+.+++..+..+..+.+.+.........-+..+.
T Consensus 226 ~~~~~~I~~~~~~~~~~L~kl~--~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L 303 (359)
T PF10498_consen 226 KQHKKSIESALPETKSQLDKLQ--QDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTREL 303 (359)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQ 209 (351)
Q Consensus 198 E~Lk~EVqRLR~ 209 (351)
..+.+|+++.++
T Consensus 304 ~~IseeLe~vK~ 315 (359)
T PF10498_consen 304 AEISEELEQVKQ 315 (359)
T ss_pred HHHHHHHHHHHH
No 489
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=46.66 E-value=1.9e+02 Score=27.67 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSE----RMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq----rLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
..++.||.+++.|+........++..++..-..+..+...|.. --..+.+....-.+.+..+..+++.|
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l 140 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQL 140 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=46.64 E-value=11 Score=34.37 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
...+......|..+...|..+...|..||..|+.++....+..+-.+.....|-+|+..|+.+
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl 72 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFL 72 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHH
No 491
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=46.53 E-value=1.8e+02 Score=24.58 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---------chhhhhHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQ---IAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN---------NIVFINAEIADNKAEVGR 206 (351)
Q Consensus 139 qYIeELE~kVq~Lq~E---Ns~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ---------q~~lkda~~E~Lk~EVqR 206 (351)
..+..|+.....+-+. ...++.++..+..+...+..+-+.+=..|..... ...++....+.|..++..
T Consensus 20 ~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~ 99 (151)
T cd00179 20 EDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVE 99 (151)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 038341 207 LRQLHLYQQQLK 218 (351)
Q Consensus 207 LR~a~i~qQqq~ 218 (351)
+=.. ||+.|.
T Consensus 100 ~m~~--fq~~Q~ 109 (151)
T cd00179 100 VMTE--FNKAQR 109 (151)
T ss_pred HHHH--HHHHHH
No 492
>smart00340 HALZ homeobox associated leucin zipper.
Probab=46.27 E-value=34 Score=25.53 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 163 SLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 163 ~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
++|.+-+..|..||+.|+..++.|.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PHA02557 22 prohead core protein; Provisional
Probab=46.17 E-value=76 Score=31.62 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 155 IAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 155 Ns~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+..|..+|...+++...|-.+|.+|+.+|..+.....+.+++-..-....+++..+
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L 198 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASL 198 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHH
No 494
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=46.13 E-value=1.6e+02 Score=29.80 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQLKMLE 221 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~~~~ 221 (351)
|-++..|+.|.+--+.+-+.|......|..-..+|-..++.+....++-.-..+.-++||+||+.- ..|+....+
T Consensus 235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~--~~q~sqav~ 309 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG--LEQVSQAVG 309 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc
No 495
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=46.12 E-value=1.3e+02 Score=34.06 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 130 AQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 130 AqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
|.+-|+--++-++.|+..+..+.....++...-..|......|..|...|+ + ..++++..+++++...+..-++.+
T Consensus 207 hlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~-~-~~~~~~~~mrd~~~~~~e~~~~~~ 282 (916)
T KOG0249|consen 207 HLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR-R-SSLEKEQELRDHLRTYAERRRETE 282 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-H-HHHhhhhhhcchhhhhHHHHHhhc
No 496
>PRK12704 phosphodiesterase; Provisional
Probab=45.96 E-value=4e+02 Score=28.45 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHH
Q 038341 119 RLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIA 198 (351)
Q Consensus 119 R~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E 198 (351)
+..+.....++-..-+.+|.+.-.++..+-+.|...-..|..+...|.++...|....++|..+-+.|++...--+...+
T Consensus 52 ke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQ 209 (351)
Q Consensus 199 ~Lk~EVqRLR~ 209 (351)
.+.+-++....
T Consensus 132 ~~~~~~~~~~~ 142 (520)
T PRK12704 132 ELEELIEEQLQ 142 (520)
T ss_pred HHHHHHHHHHH
No 497
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=45.90 E-value=99 Score=25.42 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQ 215 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQ 215 (351)
++.|-.+|..|..-..-+..-+.....-.-.|.+| ..|..++.+.+- |.++.-|+.+|++ |||
T Consensus 12 ~etLA~EV~CLK~~lT~mLKamGQADAGkviinmE-----k~ia~~eD~~QA-----evF~nTi~QIK~a--YRq 74 (74)
T PF10769_consen 12 VETLATEVACLKALLTLMLKAMGQADAGKVIINME-----KYIAQMEDPKQA-----EVFKNTIKQIKTA--YRQ 74 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH-----HHHHhccCHHHH-----HHHHHHHHHHHHH--hcC
No 498
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.85 E-value=76 Score=32.43 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
...|+.+...++.++..|..++..+..+...+..|...|+..|..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 17 ERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 499
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=45.70 E-value=1.2e+02 Score=24.32 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
.+-+++-+..+...+.|....+...+++..|...+..|..+++.|..+
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.54 E-value=86 Score=26.62 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 133 SRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQR 177 (351)
Q Consensus 133 SR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~ 177 (351)
++..=...+..|+.+++.+..++.+|...+..+.++...|..|.+
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!