Query 038341
Match_columns 351
No_of_seqs 201 out of 673
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 17:13:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 3.6E-14 1.2E-18 105.6 6.4 51 118-168 1-51 (55)
2 1t2k_D Cyclic-AMP-dependent tr 99.3 5.9E-12 2E-16 94.5 9.0 55 118-172 1-55 (61)
3 2wt7_A Proto-oncogene protein 99.3 7E-12 2.4E-16 95.0 9.3 57 117-173 1-57 (63)
4 1jnm_A Proto-oncogene C-JUN; B 99.2 3.9E-11 1.3E-15 90.4 7.7 55 118-172 1-55 (62)
5 2dgc_A Protein (GCN4); basic d 99.0 4.7E-10 1.6E-14 85.4 6.9 48 121-168 12-59 (63)
6 1gd2_E Transcription factor PA 98.9 1.8E-09 6E-14 84.3 7.6 65 116-180 6-70 (70)
7 1ci6_A Transcription factor AT 98.9 2.9E-09 9.9E-14 80.9 8.1 55 118-172 2-56 (63)
8 1gu4_A CAAT/enhancer binding p 98.5 1.2E-06 4E-11 69.6 10.1 58 114-171 11-68 (78)
9 1hjb_A Ccaat/enhancer binding 98.4 1.6E-06 5.4E-11 70.1 10.1 59 113-171 10-68 (87)
10 2wt7_B Transcription factor MA 98.2 7.5E-06 2.5E-10 66.7 9.4 65 115-186 24-88 (90)
11 3a5t_A Transcription factor MA 98.2 3.6E-08 1.2E-12 82.5 -4.5 44 116-159 35-78 (107)
12 2oqq_A Transcription factor HY 97.6 7.7E-05 2.6E-09 53.2 5.4 36 138-173 2-37 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.1 0.05 1.7E-06 43.6 10.1 59 139-204 6-64 (81)
14 1skn_P DNA-binding domain of S 95.6 0.0043 1.5E-07 50.7 2.1 32 116-147 60-91 (92)
15 3s4r_A Vimentin; alpha-helix, 94.7 0.24 8.1E-06 39.9 9.5 64 146-209 23-91 (93)
16 3oja_B Anopheles plasmodium-re 93.9 1.4 4.9E-05 43.3 15.2 69 142-210 505-573 (597)
17 2jee_A YIIU; FTSZ, septum, coi 93.8 0.45 1.5E-05 38.1 9.3 42 142-183 23-64 (81)
18 3hnw_A Uncharacterized protein 93.6 0.34 1.2E-05 41.6 8.9 54 135-188 71-124 (138)
19 2w6a_A ARF GTPase-activating p 93.4 0.32 1.1E-05 37.2 7.4 40 141-180 22-61 (63)
20 3ol1_A Vimentin; structural ge 93.1 1.1 3.7E-05 37.3 11.0 72 139-210 20-105 (119)
21 3efg_A Protein SLYX homolog; x 92.6 0.32 1.1E-05 38.2 6.7 50 139-188 14-63 (78)
22 3u1c_A Tropomyosin alpha-1 cha 92.4 3.7 0.00013 33.2 13.9 70 138-207 22-98 (101)
23 3mq9_A Bone marrow stromal ant 92.1 2.7 9.3E-05 40.5 13.9 70 139-208 397-470 (471)
24 2v71_A Nuclear distribution pr 92.0 1.4 4.6E-05 40.0 10.9 47 141-187 90-136 (189)
25 3qh9_A Liprin-beta-2; coiled-c 91.8 1 3.6E-05 36.1 8.8 62 143-204 16-77 (81)
26 3na7_A HP0958; flagellar bioge 91.8 4.3 0.00015 37.0 14.2 31 133-163 47-77 (256)
27 3he5_A Synzip1; heterodimeric 91.2 0.96 3.3E-05 32.5 7.2 21 141-161 5-25 (49)
28 3s9g_A Protein hexim1; cyclin 90.8 0.64 2.2E-05 38.7 6.9 47 157-210 41-87 (104)
29 2v71_A Nuclear distribution pr 90.5 2.5 8.5E-05 38.3 11.1 12 198-209 91-102 (189)
30 3oja_B Anopheles plasmodium-re 90.3 2.9 0.0001 41.1 12.4 25 159-183 508-532 (597)
31 2dfs_A Myosin-5A; myosin-V, in 90.3 3.1 0.00011 45.7 13.8 25 147-171 985-1009(1080)
32 3swy_A Cyclic nucleotide-gated 90.1 1 3.4E-05 32.6 6.6 44 143-189 2-45 (46)
33 3cve_A Homer protein homolog 1 90.0 3 0.0001 32.6 9.7 45 142-186 3-47 (72)
34 3cvf_A Homer-3, homer protein 89.7 1.5 5.1E-05 34.9 7.9 45 142-186 9-53 (79)
35 2oqq_A Transcription factor HY 89.7 1.3 4.3E-05 31.7 6.6 37 147-183 4-40 (42)
36 1ci6_A Transcription factor AT 89.6 1.1 3.8E-05 33.5 6.8 36 161-210 24-59 (63)
37 1hjb_A Ccaat/enhancer binding 89.4 3.1 0.00011 33.4 9.7 34 163-210 39-72 (87)
38 1deb_A APC protein, adenomatou 89.4 1.7 5.8E-05 32.3 7.4 42 142-183 6-47 (54)
39 3u1c_A Tropomyosin alpha-1 cha 89.3 7.5 0.00026 31.3 13.2 26 161-186 31-56 (101)
40 3q8t_A Beclin-1; autophagy, AT 89.1 7.1 0.00024 31.4 11.7 46 142-187 7-52 (96)
41 3u59_A Tropomyosin beta chain; 89.1 7.6 0.00026 31.1 13.8 53 134-186 18-70 (101)
42 2oxj_A Hybrid alpha/beta pepti 89.1 0.5 1.7E-05 32.3 4.1 28 140-167 2-29 (34)
43 3m48_A General control protein 89.0 0.44 1.5E-05 32.5 3.7 27 141-167 2-28 (33)
44 2dfs_A Myosin-5A; myosin-V, in 88.7 3.4 0.00012 45.5 12.5 43 145-187 976-1018(1080)
45 3cvf_A Homer-3, homer protein 88.3 0.51 1.7E-05 37.6 4.3 38 170-207 16-53 (79)
46 1gu4_A CAAT/enhancer binding p 88.0 3 0.0001 32.8 8.5 34 163-210 39-72 (78)
47 3swk_A Vimentin; cytoskeleton, 87.9 1.6 5.5E-05 34.6 7.0 17 194-210 69-85 (86)
48 1go4_E MAD1 (mitotic arrest de 87.9 2.2 7.5E-05 35.2 8.0 16 195-210 75-90 (100)
49 1kd8_B GABH BLL, GCN4 acid bas 87.5 0.71 2.4E-05 31.9 4.1 28 140-167 2-29 (36)
50 3u59_A Tropomyosin beta chain; 87.0 10 0.00036 30.3 13.2 81 127-207 18-98 (101)
51 3c3f_A Alpha/beta peptide with 86.9 0.82 2.8E-05 31.3 4.1 28 140-167 2-29 (34)
52 3hnw_A Uncharacterized protein 86.7 4 0.00014 34.9 9.3 10 198-207 120-129 (138)
53 3ghg_A Fibrinogen alpha chain; 86.4 3.9 0.00013 42.4 10.6 48 136-183 107-154 (562)
54 1kd8_A GABH AIV, GCN4 acid bas 86.0 0.79 2.7E-05 31.7 3.6 29 140-168 2-30 (36)
55 1go4_E MAD1 (mitotic arrest de 86.0 2.5 8.6E-05 34.9 7.4 22 143-164 16-37 (100)
56 3mq7_A Bone marrow stromal ant 86.0 3.5 0.00012 35.1 8.4 15 169-183 73-87 (121)
57 3swf_A CGMP-gated cation chann 85.9 1.6 5.6E-05 34.4 5.9 45 142-189 3-47 (74)
58 3na7_A HP0958; flagellar bioge 85.7 20 0.00069 32.5 14.1 41 144-184 95-135 (256)
59 3c3g_A Alpha/beta peptide with 85.5 1.5 5E-05 29.9 4.7 27 141-167 2-28 (33)
60 2ocy_A RAB guanine nucleotide 85.1 19 0.00065 31.7 13.0 64 145-210 78-144 (154)
61 2hy6_A General control protein 85.1 1.1 3.7E-05 30.7 3.9 28 140-167 2-29 (34)
62 2wq1_A General control protein 85.0 1.6 5.4E-05 29.7 4.7 27 141-167 2-28 (33)
63 2ve7_C Kinetochore protein NUF 84.6 0.72 2.5E-05 42.8 4.0 62 114-189 116-177 (250)
64 2bni_A General control protein 84.5 1.2 4E-05 30.5 3.9 28 140-167 2-29 (34)
65 1nkp_B MAX protein, MYC proto- 84.1 1.3 4.3E-05 34.2 4.6 21 167-187 61-81 (83)
66 3s9g_A Protein hexim1; cyclin 84.1 6.2 0.00021 32.8 8.8 41 143-183 41-88 (104)
67 3m91_A Proteasome-associated A 83.9 4.2 0.00014 29.8 7.0 10 198-207 40-49 (51)
68 3vkg_A Dynein heavy chain, cyt 83.9 7.8 0.00027 47.5 13.1 59 148-206 2030-2088(3245)
69 1uo4_A General control protein 83.8 1.3 4.5E-05 30.3 3.9 28 140-167 2-29 (34)
70 3a7p_A Autophagy protein 16; c 83.6 12 0.00043 32.9 11.1 38 146-183 96-133 (152)
71 3o0z_A RHO-associated protein 83.1 19 0.00065 32.1 12.2 81 128-210 25-112 (168)
72 2wt7_B Transcription factor MA 82.9 12 0.00041 30.3 9.9 12 198-209 72-83 (90)
73 3m9b_A Proteasome-associated A 82.1 0.91 3.1E-05 42.9 3.5 13 198-210 85-97 (251)
74 2yy0_A C-MYC-binding protein; 82.0 2.8 9.5E-05 30.7 5.4 30 148-184 21-50 (53)
75 1t2k_D Cyclic-AMP-dependent tr 82.0 12 0.00041 27.4 8.9 22 162-183 24-45 (61)
76 2kz5_A Transcription factor NF 81.7 0.12 4.2E-06 42.2 -2.1 24 117-140 65-88 (91)
77 1fmh_A General control protein 81.6 2.5 8.4E-05 28.3 4.5 28 141-168 3-30 (33)
78 3cve_A Homer protein homolog 1 81.5 3.5 0.00012 32.2 6.1 39 141-179 9-47 (72)
79 3m91_A Proteasome-associated A 81.4 6.7 0.00023 28.7 7.2 40 147-186 10-49 (51)
80 2c9l_Y EB1, zebra, BZLF1 trans 80.7 8 0.00027 29.2 7.5 36 124-159 7-42 (63)
81 2ocy_A RAB guanine nucleotide 80.5 17 0.00057 32.0 10.8 48 140-187 45-92 (154)
82 3i00_A HIP-I, huntingtin-inter 80.4 16 0.00055 30.7 10.3 47 133-186 34-80 (120)
83 2xdj_A Uncharacterized protein 80.3 12 0.0004 29.7 8.9 43 142-184 23-65 (83)
84 3tnu_B Keratin, type II cytosk 79.8 11 0.00037 31.3 9.1 20 141-160 38-57 (129)
85 3o0z_A RHO-associated protein 79.6 34 0.0011 30.5 13.7 56 128-190 79-134 (168)
86 1nlw_A MAD protein, MAX dimeri 79.0 3.7 0.00013 32.0 5.6 28 138-165 46-73 (80)
87 3he5_A Synzip1; heterodimeric 78.8 7.5 0.00025 27.9 6.5 17 194-210 30-46 (49)
88 2v4h_A NF-kappa-B essential mo 78.8 17 0.00059 30.5 9.8 47 122-168 28-77 (110)
89 4emc_A Monopolin complex subun 78.0 5.1 0.00017 36.5 6.9 39 145-190 19-57 (190)
90 3tnu_A Keratin, type I cytoske 77.8 9.7 0.00033 31.7 8.2 14 142-155 41-54 (131)
91 2eqb_B RAB guanine nucleotide 77.8 28 0.00095 28.6 10.9 49 139-187 12-60 (97)
92 3q8t_A Beclin-1; autophagy, AT 77.8 25 0.00087 28.1 12.4 58 130-187 16-73 (96)
93 3a7o_A Autophagy protein 16; c 75.8 13 0.00045 29.3 7.7 30 159-188 45-74 (75)
94 1gd2_E Transcription factor PA 75.6 17 0.00059 28.0 8.4 40 140-186 23-62 (70)
95 2v66_B Nuclear distribution pr 75.5 35 0.0012 28.5 12.7 47 141-187 37-83 (111)
96 3oja_A Leucine-rich immune mol 75.0 23 0.00079 34.1 11.2 36 151-186 426-461 (487)
97 4etp_A Kinesin-like protein KA 75.0 5.9 0.0002 38.8 7.1 14 169-182 26-39 (403)
98 2wt7_A Proto-oncogene protein 74.0 24 0.00082 26.0 9.3 35 162-210 25-59 (63)
99 3he5_B Synzip2; heterodimeric 73.7 15 0.00052 26.6 7.1 29 155-183 5-33 (52)
100 3mq7_A Bone marrow stromal ant 73.7 15 0.00051 31.3 8.2 32 176-207 73-104 (121)
101 1wle_A Seryl-tRNA synthetase; 73.6 44 0.0015 33.9 13.2 15 113-130 39-53 (501)
102 2r2v_A GCN4 leucine zipper; co 73.4 4.7 0.00016 27.6 4.1 28 140-167 2-29 (34)
103 2eqb_B RAB guanine nucleotide 73.2 17 0.00058 29.9 8.2 40 144-183 24-63 (97)
104 3nmd_A CGMP dependent protein 73.2 6 0.0002 31.0 5.3 31 180-210 39-69 (72)
105 3i00_A HIP-I, huntingtin-inter 73.1 35 0.0012 28.6 10.4 15 196-210 69-83 (120)
106 1nkp_A C-MYC, MYC proto-oncoge 72.9 9.6 0.00033 30.0 6.5 18 170-187 69-86 (88)
107 1zme_C Proline utilization tra 72.8 2.6 8.9E-05 30.5 3.0 25 138-162 43-67 (70)
108 4ati_A MITF, microphthalmia-as 72.3 2.5 8.6E-05 35.1 3.2 23 168-190 92-114 (118)
109 1wt6_A Myotonin-protein kinase 72.2 36 0.0012 27.2 9.8 57 126-185 14-70 (81)
110 3vmx_A Voltage-gated hydrogen 72.0 15 0.0005 26.9 6.7 35 145-179 3-37 (48)
111 3htk_A Structural maintenance 71.9 24 0.00083 25.2 8.6 49 136-184 9-57 (60)
112 2yy0_A C-MYC-binding protein; 71.9 7.3 0.00025 28.5 5.2 19 168-186 20-38 (53)
113 3u06_A Protein claret segregat 71.4 7.2 0.00025 38.5 6.7 35 149-183 6-40 (412)
114 1wle_A Seryl-tRNA synthetase; 71.3 27 0.00093 35.4 11.0 72 116-187 49-136 (501)
115 1f5n_A Interferon-induced guan 71.2 41 0.0014 34.7 12.4 76 131-210 504-582 (592)
116 3m9b_A Proteasome-associated A 71.0 4.1 0.00014 38.5 4.6 9 244-252 135-143 (251)
117 2oto_A M protein; helical coil 70.5 43 0.0015 28.3 10.6 28 142-169 53-80 (155)
118 3m0d_C TNF receptor-associated 70.4 27 0.00091 26.1 8.2 34 137-170 4-37 (65)
119 1am9_A Srebp-1A, protein (ster 69.8 6.9 0.00024 30.3 5.0 59 128-186 12-76 (82)
120 1nkp_B MAX protein, MYC proto- 69.3 7.6 0.00026 29.8 5.1 30 139-168 47-76 (83)
121 3cl3_D NF-kappa-B essential mo 68.9 5.7 0.0002 34.3 4.7 43 172-216 53-95 (130)
122 3mq9_A Bone marrow stromal ant 68.9 33 0.0011 32.9 10.6 70 139-210 390-465 (471)
123 1jcd_A Major outer membrane li 68.8 26 0.00088 25.7 7.5 23 142-164 7-29 (52)
124 2w83_C C-JUN-amino-terminal ki 68.6 22 0.00075 28.2 7.6 16 145-160 8-23 (77)
125 3vkg_A Dynein heavy chain, cyt 68.0 19 0.00065 44.3 10.4 75 136-210 2025-2099(3245)
126 1jnm_A Proto-oncogene C-JUN; B 68.0 33 0.0011 25.1 8.9 21 163-183 25-45 (62)
127 3tnu_A Keratin, type I cytoske 67.8 33 0.0011 28.4 9.1 21 143-163 49-69 (131)
128 3s4r_A Vimentin; alpha-helix, 67.2 37 0.0013 27.0 8.9 21 159-179 22-42 (93)
129 4ath_A MITF, microphthalmia-as 67.1 14 0.00046 29.6 6.2 42 138-190 38-79 (83)
130 4emc_A Monopolin complex subun 67.0 23 0.00078 32.3 8.4 43 141-183 22-64 (190)
131 2dq0_A Seryl-tRNA synthetase; 67.0 45 0.0015 33.2 11.4 6 277-282 215-220 (455)
132 1deq_A Fibrinogen (alpha chain 65.4 37 0.0013 33.9 10.3 53 138-190 112-164 (390)
133 3jsv_C NF-kappa-B essential mo 65.1 40 0.0014 27.6 8.7 44 125-168 9-55 (94)
134 1dip_A Delta-sleep-inducing pe 65.0 6.6 0.00023 31.2 4.0 29 154-182 16-44 (78)
135 2dgc_A Protein (GCN4); basic d 65.0 30 0.001 25.8 7.5 17 168-184 38-54 (63)
136 2efr_A General control protein 65.0 62 0.0021 28.3 10.6 10 199-208 102-111 (155)
137 1t6f_A Geminin; coiled-coil, c 64.8 13 0.00043 25.8 4.8 28 153-180 7-34 (37)
138 3nmd_A CGMP dependent protein 64.7 31 0.0011 26.9 7.7 23 140-162 41-63 (72)
139 3efg_A Protein SLYX homolog; x 64.7 22 0.00074 27.7 6.9 25 143-167 11-35 (78)
140 3ghg_A Fibrinogen alpha chain; 64.3 29 0.00098 36.1 9.5 16 195-210 138-153 (562)
141 3a2a_A Voltage-gated hydrogen 64.1 17 0.0006 27.3 5.9 33 145-177 10-42 (58)
142 1ses_A Seryl-tRNA synthetase; 64.1 39 0.0013 33.2 10.3 48 139-186 28-83 (421)
143 2dq0_A Seryl-tRNA synthetase; 63.9 31 0.0011 34.3 9.6 7 126-132 10-16 (455)
144 3qne_A Seryl-tRNA synthetase, 63.9 32 0.0011 34.9 9.8 12 116-127 14-25 (485)
145 2lw1_A ABC transporter ATP-bin 63.7 30 0.001 26.9 7.6 47 141-187 24-76 (89)
146 3q0x_A Centriole protein; cent 63.3 45 0.0015 30.9 9.9 56 115-176 160-215 (228)
147 1ic2_A Tropomyosin alpha chain 63.1 49 0.0017 25.3 10.8 34 142-175 23-56 (81)
148 1dip_A Delta-sleep-inducing pe 63.1 6 0.0002 31.4 3.4 27 177-210 18-44 (78)
149 3uux_B Mitochondrial division 62.6 53 0.0018 30.9 10.2 58 141-205 165-222 (242)
150 2er8_A Regulatory protein Leu3 62.6 4 0.00014 29.8 2.2 22 138-159 48-69 (72)
151 1dh3_A Transcription factor CR 62.6 11 0.00038 27.5 4.6 27 162-188 24-50 (55)
152 4h22_A Leucine-rich repeat fli 62.5 35 0.0012 28.3 8.1 13 114-126 6-18 (103)
153 4h22_A Leucine-rich repeat fli 61.4 32 0.0011 28.5 7.6 6 143-148 6-11 (103)
154 4b4t_K 26S protease regulatory 61.1 9.1 0.00031 37.9 5.1 52 151-209 40-91 (428)
155 2e7s_A RAB guanine nucleotide 60.3 19 0.00065 31.1 6.3 47 141-187 34-80 (135)
156 1nlw_A MAD protein, MAX dimeri 60.2 22 0.00076 27.5 6.2 30 156-185 50-79 (80)
157 1am9_A Srebp-1A, protein (ster 60.1 30 0.001 26.6 7.0 26 138-163 49-74 (82)
158 4b4t_K 26S protease regulatory 59.9 14 0.00048 36.5 6.2 45 142-186 45-89 (428)
159 1uii_A Geminin; human, DNA rep 59.3 28 0.00096 27.9 6.7 28 154-181 47-74 (83)
160 2j5u_A MREC protein; bacterial 59.2 4.6 0.00016 37.3 2.5 35 172-210 24-58 (255)
161 3vmx_A Voltage-gated hydrogen 58.4 27 0.00092 25.5 5.9 35 169-210 6-40 (48)
162 3lay_A Zinc resistance-associa 58.3 37 0.0013 30.1 8.0 12 197-208 115-126 (175)
163 2e7s_A RAB guanine nucleotide 57.9 15 0.0005 31.8 5.2 65 144-210 65-132 (135)
164 3oja_A Leucine-rich immune mol 57.7 69 0.0024 30.8 10.6 8 138-145 373-380 (487)
165 2v4h_A NF-kappa-B essential mo 57.4 85 0.0029 26.3 11.9 35 176-210 64-98 (110)
166 1a93_B MAX protein, coiled coi 57.0 19 0.00066 24.6 4.6 12 172-183 19-30 (34)
167 1m1j_C Fibrinogen gamma chain; 56.0 1.4E+02 0.0048 29.7 12.6 28 138-165 40-67 (409)
168 2wuj_A Septum site-determining 55.9 12 0.00039 27.5 3.7 24 140-163 28-51 (57)
169 2zqm_A Prefoldin beta subunit 55.9 43 0.0015 26.3 7.4 21 131-151 26-46 (117)
170 1ytz_T Troponin T; muscle, THI 55.5 87 0.003 25.8 11.0 18 126-143 15-32 (107)
171 2xnx_M M protein, M1-BC1; cell 54.9 1.1E+02 0.0037 26.8 10.9 46 165-210 85-130 (146)
172 3bas_A Myosin heavy chain, str 54.7 75 0.0026 24.8 11.4 48 140-187 36-83 (89)
173 2wvr_A Geminin; DNA replicatio 54.7 34 0.0012 31.5 7.4 31 153-183 115-145 (209)
174 1ses_A Seryl-tRNA synthetase; 54.2 37 0.0013 33.3 8.1 55 116-175 3-57 (421)
175 1fxk_C Protein (prefoldin); ar 54.2 41 0.0014 27.3 7.2 31 143-173 92-122 (133)
176 2efr_A General control protein 53.4 1.1E+02 0.0039 26.6 13.6 43 141-183 72-114 (155)
177 2dnx_A Syntaxin-12; snare, HAB 53.3 78 0.0027 26.2 8.9 70 141-210 30-106 (130)
178 1wlq_A Geminin; coiled-coil; 2 53.0 33 0.0011 27.5 6.2 29 153-181 38-66 (83)
179 2xdj_A Uncharacterized protein 53.0 82 0.0028 24.8 10.3 18 166-183 26-43 (83)
180 1m1j_A Fibrinogen alpha subuni 52.2 1.1E+02 0.0038 31.3 11.3 17 194-210 138-154 (491)
181 2nrj_A HBL B protein; enteroto 52.1 60 0.0021 31.1 9.1 73 135-210 119-191 (346)
182 1lwu_C Fibrinogen gamma chain; 52.0 37 0.0013 32.8 7.6 19 265-283 152-170 (323)
183 2zvf_A Alanyl-tRNA synthetase; 51.8 22 0.00074 29.8 5.3 9 140-148 8-16 (171)
184 1s94_A S-syntaxin; three helix 51.8 1.1E+02 0.0038 25.9 10.8 26 191-218 122-147 (180)
185 3qne_A Seryl-tRNA synthetase, 50.4 82 0.0028 32.0 10.1 15 172-186 76-90 (485)
186 3u06_A Protein claret segregat 50.1 40 0.0014 33.2 7.6 20 143-162 21-40 (412)
187 3tnu_B Keratin, type II cytosk 50.0 1.1E+02 0.0036 25.2 11.6 24 142-165 46-69 (129)
188 1hlo_A Protein (transcription 50.0 14 0.00047 28.3 3.4 7 140-146 58-64 (80)
189 3htk_A Structural maintenance 49.7 67 0.0023 22.8 7.5 42 142-183 8-49 (60)
190 1wt6_A Myotonin-protein kinase 49.3 81 0.0028 25.2 7.8 57 141-208 16-72 (81)
191 3tq2_A KE1; parallel three hel 49.3 40 0.0014 22.8 5.2 32 156-187 4-35 (36)
192 2oto_A M protein; helical coil 48.7 1.2E+02 0.0042 25.5 10.4 60 148-207 45-105 (155)
193 2zxx_A Geminin; coiled-coil, c 48.6 49 0.0017 26.3 6.4 31 153-183 34-64 (79)
194 2oa5_A Hypothetical protein BQ 48.6 9.6 0.00033 32.0 2.5 22 141-162 10-31 (110)
195 2b9c_A Striated-muscle alpha t 48.4 1.3E+02 0.0044 25.8 11.9 63 118-186 37-99 (147)
196 1ic2_A Tropomyosin alpha chain 48.1 90 0.0031 23.8 11.6 48 142-189 9-56 (81)
197 3t98_B Nucleoporin NUP58/NUP45 47.1 1.1E+02 0.0036 24.6 8.4 33 178-210 48-80 (93)
198 2j5u_A MREC protein; bacterial 47.0 10 0.00035 34.9 2.7 16 169-184 45-60 (255)
199 2ke4_A CDC42-interacting prote 46.5 1.1E+02 0.0038 24.6 8.5 8 199-206 73-80 (98)
200 2oa5_A Hypothetical protein BQ 46.4 12 0.00041 31.5 2.7 24 162-185 10-33 (110)
201 3bas_A Myosin heavy chain, str 46.3 1E+02 0.0035 24.0 11.1 44 139-182 14-57 (89)
202 3jsv_C NF-kappa-B essential mo 46.1 1.2E+02 0.0041 24.7 9.8 66 141-210 11-76 (94)
203 1nkp_A C-MYC, MYC proto-oncoge 46.0 63 0.0022 25.3 6.8 24 139-162 52-75 (88)
204 3swk_A Vimentin; cytoskeleton, 45.4 57 0.002 25.6 6.5 28 141-168 2-29 (86)
205 4e61_A Protein BIM1; EB1-like 45.2 56 0.0019 27.2 6.6 17 171-187 22-38 (106)
206 3uux_B Mitochondrial division 44.9 64 0.0022 30.3 7.7 53 138-190 176-228 (242)
207 1gk7_A Vimentin; intermediate 44.7 56 0.0019 22.4 5.5 20 165-184 18-37 (39)
208 3trt_A Vimentin; cytoskeleton, 44.6 94 0.0032 23.1 9.3 18 168-185 50-67 (77)
209 3s84_A Apolipoprotein A-IV; fo 44.6 1.6E+02 0.0056 27.3 10.5 80 128-210 165-246 (273)
210 3ljm_A Coil Ser L9C; de novo d 44.0 39 0.0013 22.3 4.3 24 142-165 4-27 (31)
211 1vcs_A Vesicle transport throu 43.9 49 0.0017 26.4 6.0 31 135-165 34-64 (102)
212 1jcd_A Major outer membrane li 43.8 75 0.0026 23.2 6.4 24 147-170 5-28 (52)
213 2akf_A Coronin-1A; coiled coil 43.8 30 0.001 23.1 3.8 26 142-167 2-27 (32)
214 4gkw_A Spindle assembly abnorm 43.7 1.7E+02 0.0057 25.7 10.5 68 141-208 48-125 (167)
215 2xv5_A Lamin-A/C; structural p 43.6 1.1E+02 0.0038 23.6 8.8 20 136-155 9-28 (74)
216 3onj_A T-snare VTI1; helix, HA 43.5 1.2E+02 0.0041 23.9 9.6 50 134-183 29-81 (97)
217 1ez3_A Syntaxin-1A; three heli 43.4 1.2E+02 0.0041 23.9 11.5 23 192-216 92-114 (127)
218 3e98_A GAF domain of unknown f 43.3 82 0.0028 28.8 8.2 43 141-187 67-109 (252)
219 3lss_A Seryl-tRNA synthetase; 43.3 1.9E+02 0.0064 29.3 11.4 20 142-161 40-59 (484)
220 1uii_A Geminin; human, DNA rep 42.4 70 0.0024 25.6 6.5 32 172-210 44-75 (83)
221 2no2_A HIP-I, huntingtin-inter 42.3 1.4E+02 0.0048 24.4 12.1 24 129-152 19-42 (107)
222 2fxo_A Myosin heavy chain, car 41.9 1.5E+02 0.005 24.5 13.9 11 199-209 108-118 (129)
223 1lq7_A Alpha3W; three helix bu 41.9 44 0.0015 25.2 5.0 61 141-206 4-66 (67)
224 1m1j_C Fibrinogen gamma chain; 41.8 61 0.0021 32.2 7.5 9 265-273 230-238 (409)
225 3ghg_C Fibrinogen gamma chain; 41.5 2.4E+02 0.0084 28.1 11.7 71 140-210 39-127 (411)
226 2i1j_A Moesin; FERM, coiled-co 41.3 17 0.00057 37.3 3.5 29 182-210 420-448 (575)
227 2wuj_A Septum site-determining 40.9 29 0.00099 25.3 3.8 25 164-188 31-55 (57)
228 2dq3_A Seryl-tRNA synthetase; 40.8 97 0.0033 30.4 8.7 7 276-282 193-199 (425)
229 1deq_A Fibrinogen (alpha chain 40.5 2.9E+02 0.01 27.6 11.9 11 198-208 144-154 (390)
230 2lz1_A Nuclear factor erythroi 40.2 0.65 2.2E-05 37.9 -5.6 23 117-139 65-87 (90)
231 1p9i_A Cortexillin I/GCN4 hybr 40.1 40 0.0014 22.2 3.9 13 171-183 10-22 (31)
232 1zxa_A CGMP-dependent protein 39.6 43 0.0015 25.8 4.7 32 136-167 22-53 (67)
233 1lwu_C Fibrinogen gamma chain; 39.2 84 0.0029 30.3 7.8 27 142-168 15-41 (323)
234 2ve7_C Kinetochore protein NUF 39.2 20 0.0007 33.1 3.4 12 172-183 153-164 (250)
235 3bbp_D GRIP and coiled-coil do 39.1 22 0.00075 27.8 3.0 42 144-185 20-61 (71)
236 3iv1_A Tumor susceptibility ge 39.0 1.4E+02 0.0049 23.5 8.5 50 158-207 23-72 (78)
237 2fic_A Bridging integrator 1; 38.9 2E+02 0.0068 25.2 11.0 11 176-186 199-209 (251)
238 2zdi_C Prefoldin subunit alpha 38.8 61 0.0021 27.1 6.1 38 142-179 101-138 (151)
239 3m0d_C TNF receptor-associated 38.5 1.2E+02 0.0041 22.5 8.5 51 158-208 11-61 (65)
240 3mov_A Lamin-B1; LMNB1, B-type 38.5 39 0.0013 27.1 4.6 10 199-208 76-85 (95)
241 3vp9_A General transcriptional 38.2 1.6E+02 0.0054 23.9 8.4 25 142-166 39-63 (92)
242 2i1j_A Moesin; FERM, coiled-co 38.2 20 0.00069 36.6 3.5 25 141-165 337-361 (575)
243 2qyw_A Vesicle transport throu 38.1 1.1E+02 0.0037 24.5 7.2 49 135-183 45-94 (102)
244 3he5_B Synzip2; heterodimeric 37.7 1.1E+02 0.0039 22.0 6.7 20 144-163 22-41 (52)
245 1m1j_B Fibrinogen beta chain; 37.6 2E+02 0.0068 29.1 10.5 16 195-210 175-190 (464)
246 1x8y_A Lamin A/C; structural p 37.4 1.4E+02 0.0049 23.1 9.5 11 151-161 40-50 (86)
247 1gk6_A Vimentin; intermediate 37.4 89 0.003 22.8 6.0 31 143-173 4-34 (59)
248 2ve7_A Kinetochore protein HEC 37.3 44 0.0015 31.6 5.5 22 147-168 186-207 (315)
249 4dzn_A Coiled-coil peptide CC- 37.2 72 0.0025 21.2 4.8 11 199-209 20-30 (33)
250 3q0x_A Centriole protein; cent 36.1 1E+02 0.0034 28.5 7.5 40 150-189 168-207 (228)
251 1fmh_A General control protein 35.9 37 0.0013 22.6 3.3 25 165-189 6-30 (33)
252 1a93_B MAX protein, coiled coi 35.9 55 0.0019 22.3 4.2 19 149-167 10-28 (34)
253 1ik9_A DNA repair protein XRCC 35.4 2.5E+02 0.0086 25.3 11.4 36 143-178 136-171 (213)
254 3oa7_A Head morphogenesis prot 35.0 77 0.0026 29.2 6.4 38 150-187 34-71 (206)
255 1hwt_C Protein (heme activator 34.9 21 0.00072 26.3 2.3 23 136-158 55-77 (81)
256 3viq_B Mating-type switching p 33.9 1.3E+02 0.0045 24.0 6.9 18 144-161 6-23 (85)
257 2xu6_A MDV1 coiled coil; prote 33.7 92 0.0032 24.3 5.8 51 141-198 9-59 (72)
258 1jad_A PLC-beta, phospholipase 33.3 3.1E+02 0.011 25.7 12.5 64 123-186 78-146 (251)
259 3he4_A Synzip6; heterodimeric 33.2 14 0.00048 27.1 1.0 26 143-168 21-46 (56)
260 1ik9_A DNA repair protein XRCC 33.0 2.7E+02 0.0094 25.1 11.8 50 136-187 136-185 (213)
261 3a2a_A Voltage-gated hydrogen 33.0 49 0.0017 24.9 4.0 34 170-210 14-47 (58)
262 1wlq_A Geminin; coiled-coil; 2 32.9 1.1E+02 0.0037 24.5 6.2 38 173-219 37-74 (83)
263 4b4t_M 26S protease regulatory 32.6 20 0.00068 35.5 2.4 14 308-321 213-226 (434)
264 2dq3_A Seryl-tRNA synthetase; 32.5 34 0.0012 33.6 4.0 8 126-133 10-17 (425)
265 3ghg_B Fibrinogen beta chain; 32.4 2E+02 0.007 29.2 9.6 29 188-217 163-191 (461)
266 1gmj_A ATPase inhibitor; coile 32.2 1.9E+02 0.0067 23.1 9.4 8 127-134 25-32 (84)
267 3fpp_A Macrolide-specific effl 32.1 2.3E+02 0.0079 25.5 9.2 11 198-208 131-141 (341)
268 1fmh_B General control protein 32.0 1.1E+02 0.0036 20.4 5.0 19 144-162 6-24 (33)
269 2xnx_M M protein, M1-BC1; cell 32.0 2.2E+02 0.0075 24.9 8.5 12 198-209 97-108 (146)
270 4dnd_A Syntaxin-10, SYN10; str 31.9 1.5E+02 0.0051 24.9 7.3 63 144-210 65-127 (130)
271 3uul_A Utrophin; spectrin repe 31.2 1.7E+02 0.0057 22.0 10.5 60 148-210 45-111 (118)
272 1uix_A RHO-associated kinase; 31.0 1.9E+02 0.0064 22.5 8.7 32 144-175 2-33 (71)
273 4ani_A Protein GRPE; chaperone 31.0 1.9E+02 0.0064 26.4 8.3 12 144-155 64-75 (213)
274 1fio_A SSO1 protein; four heli 30.4 2.4E+02 0.0084 23.7 12.2 16 144-159 47-62 (196)
275 3qh9_A Liprin-beta-2; coiled-c 30.3 2.1E+02 0.0071 22.8 7.9 6 176-181 56-61 (81)
276 3w03_C DNA repair protein XRCC 30.1 81 0.0028 28.4 5.7 10 113-122 135-144 (184)
277 1d7m_A Cortexillin I; coiled-c 30.1 2.3E+02 0.0078 23.2 13.0 78 130-207 16-100 (101)
278 1qsd_A Protein (beta-tubulin b 30.0 1.9E+02 0.0064 23.6 7.4 68 140-210 12-79 (106)
279 1h7c_A Tubulin-specific chaper 30.0 2E+02 0.007 23.3 7.7 65 142-210 17-81 (108)
280 2aze_A Transcription factor DP 29.8 1.1E+02 0.0038 26.9 6.3 30 122-151 9-38 (155)
281 3ra3_A P1C; coiled coil domain 29.7 62 0.0021 20.9 3.5 12 172-183 5-16 (28)
282 1qvr_A CLPB protein; coiled co 29.6 1.7E+02 0.0057 30.7 8.8 31 128-158 387-420 (854)
283 3m0a_A TNF receptor-associated 29.6 1.6E+02 0.0055 21.3 8.0 22 143-164 9-30 (66)
284 2oxj_A Hybrid alpha/beta pepti 29.3 1.1E+02 0.0038 20.9 4.8 13 198-210 18-30 (34)
285 3gp4_A Transcriptional regulat 29.2 2.4E+02 0.0083 23.3 9.3 8 116-123 45-52 (142)
286 3coq_A Regulatory protein GAL4 28.9 44 0.0015 24.8 3.2 23 138-160 44-66 (89)
287 3m0a_A TNF receptor-associated 28.8 1.7E+02 0.0057 21.2 8.7 49 160-208 12-60 (66)
288 1m1j_B Fibrinogen beta chain; 28.8 4.7E+02 0.016 26.4 14.6 12 141-152 102-113 (464)
289 2p4w_A Transcriptional regulat 28.8 1.9E+02 0.0065 25.3 7.8 15 195-209 165-179 (202)
290 3v86_A De novo design helix; c 28.3 78 0.0027 20.3 3.7 19 143-161 4-22 (27)
291 2pnv_A Small conductance calci 28.0 41 0.0014 23.8 2.7 24 142-165 19-42 (43)
292 3vem_A Helicase protein MOM1; 28.0 2.7E+02 0.0093 23.4 8.4 44 116-161 40-83 (115)
293 2odv_A Plectin 1, HD1; plakin 28.0 2E+02 0.0068 26.1 8.0 34 116-149 101-134 (235)
294 2q6q_A Spindle POLE BODY compo 27.8 2.2E+02 0.0075 22.3 7.5 37 151-187 22-58 (74)
295 1s1c_X RHO-associated, coiled- 27.4 2.2E+02 0.0074 22.1 8.9 31 143-173 3-33 (71)
296 3bbp_D GRIP and coiled-coil do 27.0 56 0.0019 25.5 3.5 14 197-210 52-65 (71)
297 3lss_A Seryl-tRNA synthetase; 27.0 1.5E+02 0.0052 30.0 7.7 14 149-162 54-67 (484)
298 1fxk_A Prefoldin; archaeal pro 26.9 2.1E+02 0.0073 21.8 7.1 16 172-187 70-85 (107)
299 1fzc_C Fibrin; blood coagulati 26.9 33 0.0011 33.1 2.7 33 140-172 5-37 (319)
300 3w03_C DNA repair protein XRCC 26.8 1.3E+02 0.0043 27.1 6.3 22 138-159 144-165 (184)
301 3ol1_A Vimentin; structural ge 26.6 2.6E+02 0.0089 22.8 13.4 51 155-208 64-114 (119)
302 1m1j_A Fibrinogen alpha subuni 26.3 5.5E+02 0.019 26.4 14.3 46 138-183 110-155 (491)
303 2lf0_A Uncharacterized protein 26.2 2E+02 0.0069 24.5 7.1 15 196-210 44-58 (123)
304 4e61_A Protein BIM1; EB1-like 26.2 2.6E+02 0.0088 23.2 7.6 30 150-179 15-44 (106)
305 3e98_A GAF domain of unknown f 26.0 1E+02 0.0034 28.3 5.7 10 264-273 178-187 (252)
306 3he4_A Synzip6; heterodimeric 25.8 1.2E+02 0.0041 22.2 4.9 35 153-187 17-51 (56)
307 4b4t_M 26S protease regulatory 25.3 61 0.0021 32.1 4.4 28 158-185 44-71 (434)
308 2zqm_A Prefoldin beta subunit 25.1 2.4E+02 0.0082 21.8 11.1 14 197-210 93-106 (117)
309 1lrz_A FEMA, factor essential 25.1 2.1E+02 0.0072 27.3 8.0 9 136-144 220-228 (426)
310 2xv5_A Lamin-A/C; structural p 25.0 2.3E+02 0.008 21.7 7.5 24 145-168 4-27 (74)
311 2gkw_A TNF receptor-associated 25.0 1E+02 0.0036 26.4 5.3 12 142-153 3-14 (192)
312 1r8e_A Multidrug-efflux transp 24.9 1.8E+02 0.0062 25.4 7.0 47 116-171 65-111 (278)
313 2z5i_A TM, general control pro 24.8 1.9E+02 0.0066 20.8 5.9 22 142-163 8-29 (52)
314 3ghg_C Fibrinogen gamma chain; 24.8 2E+02 0.007 28.7 8.0 16 195-210 119-134 (411)
315 2wvr_A Geminin; DNA replicatio 24.4 1.7E+02 0.0057 27.0 6.7 39 172-219 113-151 (209)
316 3thf_A Protein shroom; coiled- 24.4 4E+02 0.014 24.1 9.3 31 134-164 14-44 (190)
317 3trt_A Vimentin; cytoskeleton, 24.1 2.2E+02 0.0075 21.0 10.0 38 142-179 38-75 (77)
318 3viq_B Mating-type switching p 23.8 2.7E+02 0.0093 22.2 7.1 18 142-159 11-28 (85)
319 4aj5_K Spindle and kinetochore 23.5 3.4E+02 0.012 23.1 8.7 32 152-183 49-80 (123)
320 1t3j_A Mitofusin 1; coiled coi 23.5 2.7E+02 0.0091 22.7 7.1 16 142-157 50-65 (96)
321 1a93_A Coiled coil, LZ, MYC pr 23.2 1.5E+02 0.005 20.1 4.6 24 163-186 10-33 (34)
322 1pyi_A Protein (pyrimidine pat 22.9 61 0.0021 24.4 3.1 19 138-156 47-65 (96)
323 3brv_B NF-kappa-B essential mo 22.8 2.7E+02 0.0093 21.6 7.3 30 148-187 10-39 (70)
324 1kd8_B GABH BLL, GCN4 acid bas 22.5 1.9E+02 0.0066 19.9 5.1 7 202-208 22-28 (36)
325 3rrk_A V-type ATPase 116 kDa s 22.1 1.9E+02 0.0066 26.7 6.9 11 294-304 286-296 (357)
326 4ath_A MITF, microphthalmia-as 22.1 2.1E+02 0.007 22.8 6.0 32 138-169 48-79 (83)
327 1c94_A Retro-GCN4 leucine zipp 22.0 20 0.0007 24.5 0.2 25 185-209 13-37 (38)
328 3hhm_B NISH2 P85alpha; PI3KCA, 22.0 2.1E+02 0.0071 27.9 7.3 62 141-202 200-265 (373)
329 1fxk_C Protein (prefoldin); ar 21.9 2.7E+02 0.0091 22.4 7.0 32 142-173 98-129 (133)
330 2b5u_A Colicin E3; high resolu 21.9 6.3E+02 0.022 26.3 11.0 20 141-160 316-335 (551)
331 2lw1_A ABC transporter ATP-bin 21.8 2.2E+02 0.0077 21.8 6.2 15 141-155 31-45 (89)
332 1tu3_F RAB GTPase binding effe 21.8 42 0.0014 26.7 1.9 46 165-210 3-55 (79)
333 2v66_B Nuclear distribution pr 21.7 3.5E+02 0.012 22.5 13.3 30 159-188 34-63 (111)
334 1zxa_A CGMP-dependent protein 21.2 74 0.0025 24.4 3.2 29 182-210 26-54 (67)
335 1cii_A Colicin IA; bacteriocin 21.1 6E+02 0.02 26.4 10.6 70 137-206 341-417 (602)
336 4g2k_A General control protein 21.0 3.9E+02 0.013 22.8 9.6 63 141-214 16-78 (125)
337 4b4t_J 26S protease regulatory 20.9 1.1E+02 0.0037 30.2 5.1 13 309-321 181-193 (405)
338 1avy_A Fibritin, gpwac M; bact 20.8 2.3E+02 0.0078 22.2 5.9 9 202-210 36-44 (74)
339 2zdi_C Prefoldin subunit alpha 20.4 38 0.0013 28.3 1.6 29 144-172 7-35 (151)
340 2c5k_T Syntaxin TLG1, T-snare 20.3 2.5E+02 0.0087 22.2 6.3 56 138-210 35-90 (95)
341 2j69_A Bacterial dynamin-like 20.1 3.5E+02 0.012 27.9 9.0 41 145-185 351-391 (695)
342 3mud_A DNA repair protein XRCC 20.1 3.8E+02 0.013 23.9 8.0 20 143-162 132-151 (175)
343 3lay_A Zinc resistance-associa 20.1 4.4E+02 0.015 23.1 9.4 12 199-210 124-135 (175)
344 4ani_A Protein GRPE; chaperone 20.0 2.1E+02 0.0072 26.1 6.5 22 141-162 68-89 (213)
345 3k29_A Putative uncharacterize 20.0 4.7E+02 0.016 23.3 14.1 28 116-143 35-62 (169)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.49 E-value=3.6e-14 Score=105.60 Aligned_cols=51 Identities=37% Similarity=0.507 Sum_probs=47.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
||.+|+++||+||++||.||++|+++||.+|..|+.||..|..++..|+..
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999998887654
No 2
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.32 E-value=5.9e-12 Score=94.48 Aligned_cols=55 Identities=38% Similarity=0.475 Sum_probs=49.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFL 172 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L 172 (351)
||.+|+.+||+||++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999987766654444
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.32 E-value=7e-12 Score=94.96 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
+||.+|+.+||+||++||+||++|+.+||.+|..|+.+|..|..++..|+.+...|.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999876665544443
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.20 E-value=3.9e-11 Score=90.39 Aligned_cols=55 Identities=33% Similarity=0.424 Sum_probs=48.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFL 172 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L 172 (351)
|+.+|..+||+||++||+||++|+.+||.+|..|+.+|..|..++..|..++..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999887766554433
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.02 E-value=4.7e-10 Score=85.44 Aligned_cols=48 Identities=27% Similarity=0.341 Sum_probs=42.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 121 RRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 121 KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
++..+||+||++||+||++|+.+||.+|..|+.+|..|..++..|..+
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333569999999999999999999999999999999999888877654
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.95 E-value=1.8e-09 Score=84.25 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLS 180 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLK 180 (351)
++...||...||.|++..|.||.+||.+||.+|..|+.++..|..++..|..++..|..|+..||
T Consensus 6 ~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 6 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44557888999999999999999999999999999999998888877777777777777777654
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.93 E-value=2.9e-09 Score=80.85 Aligned_cols=55 Identities=25% Similarity=0.369 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFL 172 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L 172 (351)
|+.++..+||.||+|+|.||++++++||.+++.|+.+|..|..++..|+.++..|
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999987776655544
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.45 E-value=1.2e-06 Score=69.55 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 114 SMDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEF 171 (351)
Q Consensus 114 ~~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~ 171 (351)
..|++-..|..+|.+||++||+++++...+++.+|..|+.||..|..+|..|..+...
T Consensus 11 k~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667899999999999999999999999999999999888888665444333
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.42 E-value=1.6e-06 Score=70.13 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 113 HSMDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEF 171 (351)
Q Consensus 113 ~~~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~ 171 (351)
...|++-..|..+|.+||++||+++++...+++.+|..|+.||..|..+|..|..+...
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677778899999999999999999999999999999999888888665444333
No 10
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.20 E-value=7.5e-06 Score=66.72 Aligned_cols=65 Identities=26% Similarity=0.283 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 115 MDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 115 ~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
...|..||-++||-+|+.+|.||...+.+||..+..|..+...|. +++..+..|...+|+++++|
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~-------~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK-------QEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 356889999999999999999999999999988877766655555 45556667777888887766
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.19 E-value=3.6e-08 Score=82.52 Aligned_cols=44 Identities=30% Similarity=0.395 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLT 159 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls 159 (351)
..|..||.++||.+|+.||.||++.+.+||.++..|+.+...|.
T Consensus 35 ~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 35 QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999998876665554433
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.65 E-value=7.7e-05 Score=53.24 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
|+|+.+||.+++.|+..|++|..+++.|++++.+|.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 689999999999999999999999988777666554
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.12 E-value=0.05 Score=43.58 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEV 204 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EV 204 (351)
.-++.||.||+.+-..+.-|.-++..|..++..|..++.+++...+.|.+ .++.|+.|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~-------en~qLk~E~ 64 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER-------ENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHH
Confidence 35788999999988888888888888888888888888888777655543 345555554
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.64 E-value=0.0043 Score=50.74 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKK 147 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~k 147 (351)
..|.+||..+||.+|+++|+||..-+..|+..
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~~ 91 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMSHY 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 46889999999999999999999999888753
No 15
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.66 E-value=0.24 Score=39.92 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 146 KKAKALENQIAMLTPQVSLYQNMQ-----EFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 146 ~kVq~Lq~ENs~Ls~qv~~Lq~q~-----~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
.||..|+.+|..|..++..++.+. .....+...|+.+|..+..+..--+.....|..++.+||.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666777777777666665432 2345666777777777766655555556667777777664
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.90 E-value=1.4 Score=43.31 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+.|++.++.++.+.+.+..++..++++...+..+.+.|++++..+++.........+++++|++.++.-
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~ 573 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQK 573 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666666666666656666677888888887776
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.84 E-value=0.45 Score=38.10 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.-|.-+|..|+.+|..|..++..++.....|..||..|++..
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555566666665554
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.60 E-value=0.34 Score=41.61 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
.+.++..+.|+.+++.+..|+..|..++..++.+...+..++.+|+.++..|+.
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555778888888888888888888888888888888888888887766553
No 19
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.40 E-value=0.32 Score=37.22 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLS 180 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLK 180 (351)
+..=|.||++|-.-|+.|+.++..+++..+.|..||..|+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3456889999999999999999999999999999999887
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.14 E-value=1.1 Score=37.31 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNM--------------QEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEV 204 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q--------------~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EV 204 (351)
.||.+|.+++..+..+++.|..++..++.. ...+..+...||..++...=...=-+...+.|++||
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555544444332 222333333444444332211111233456888888
Q ss_pred HHHHHH
Q 038341 205 GRLRQL 210 (351)
Q Consensus 205 qRLR~a 210 (351)
.-||..
T Consensus 100 ~FLKk~ 105 (119)
T 3ol1_A 100 AFLKKL 105 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888877
No 21
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=92.61 E-value=0.32 Score=38.23 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
..|.+||.++..++.-+.+|...|..-+++...|..+.+.|..|+.+++.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999999999988888888877663
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.39 E-value=3.7 Score=33.18 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSER-------MTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr-------LqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
....+.+|.+++.++.++..+..+|..|++.+..|..+-..+..+ |..-++...-.++....|.+.|+-|
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555554444444444 4433333333344555666655544
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=92.08 E-value=2.7 Score=40.49 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEF----LQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~----L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
.+...|++++..++.--..+++|-....+.... |..+..+-..||+.|+.+..-.++.++.+..||+|||
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556666666666666666655554444333 3333333334777777777667777778888888876
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.99 E-value=1.4 Score=40.03 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+..|+..+..|...+..|..++..|...++.|....+....-|+.++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 66677777777777777777777777777777766666555544444
No 25
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=91.79 E-value=1 Score=36.05 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEV 204 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EV 204 (351)
+.-.+.+.|-.|+..|+-+|+.+..+...-....+.=|..|+.|.++...+++.++.|..++
T Consensus 16 e~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 16 EKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344556777888888888888888888877777888889999999889999888888876
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.76 E-value=4.3 Score=36.99 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 133 SRMKKLQYVTDLEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 133 SR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~ 163 (351)
.-.+.+.-+.+++.++..++.+...++.++.
T Consensus 47 ~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 47 AILNLEEEKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443333333
No 27
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=91.25 E-value=0.96 Score=32.53 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQ 161 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~q 161 (351)
+.+||.+|..|+.||..|..+
T Consensus 5 vaqlenevaslenenetlkkk 25 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh
Confidence 456677776666666665544
No 28
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=90.83 E-value=0.64 Score=38.67 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 157 MLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 157 ~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.|..+++.++.++..|.......-.+|..|+ +..+.|+.|-++|++-
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe-------~everL~~ENq~L~~e 87 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELE-------LELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444443 2346666666666554
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.47 E-value=2.5 Score=38.33 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQ 209 (351)
Q Consensus 198 E~Lk~EVqRLR~ 209 (351)
..|.+||..||.
T Consensus 91 ~~Lq~el~~l~~ 102 (189)
T 2v71_A 91 SVLEDDLSQTRA 102 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.33 E-value=2.9 Score=41.10 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 159 TPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 159 s~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.+.+..++++...+..+++.+++++
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 3333333333333444444444333
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.30 E-value=3.1 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEF 171 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~ 171 (351)
+|..|+.|+.+|..++..+..+...
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~ 1009 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 32
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=90.12 E-value=1 Score=32.61 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
+||.+|..|+.-...|..+++-|-.++. .-...||+||..|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 5677777777777667766666655443 3357899999888753
No 33
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.01 E-value=3 Score=32.61 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.++..+++.++.+|..|..+|..++++...-..+...++..|..+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888877777666666666666544
No 34
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=89.73 E-value=1.5 Score=34.86 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
+++..+++.++.+|..|..+|..|+++...-..+...++..|..+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666665555555555555444
No 35
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.70 E-value=1.3 Score=31.69 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.+..|+....+|..+++.|++....|..||.-|++-|
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4667777777788888888777778888877777655
No 36
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.64 E-value=1.1 Score=33.53 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 161 QVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 161 qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+...|..+...|..+|.+|+.+| +.|+.|+..||.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i--------------~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERA--------------DSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 44556666667777777777776 4455666666655
No 37
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.42 E-value=3.1 Score=33.40 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 163 SLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 163 ~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..++.....|..||..|+.+| +.|++|+..||.+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v--------------~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKV--------------EQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 445566677788888888777 6788899999988
No 38
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=89.41 E-value=1.7 Score=32.29 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
+.|-++|+.|..||+.|+.++..-..+...|..|-..+|.=+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 678889999999999999999888888888888877666544
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.30 E-value=7.5 Score=31.35 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 161 QVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 161 qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
++..+...+..+..|...|..+|+.+
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~l 56 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333334444444444444433
No 40
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.12 E-value=7.1 Score=31.43 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
..|+..+..|..+-..|..++..|.++...+..+...++.....|.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666666666666666655555554
No 41
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.07 E-value=7.6 Score=31.09 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
...-....+.+|.+++.++.++..+..++..|++.+..|..+-..+..++...
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445556666666666666666666666655555555555554444433
No 42
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.07 E-value=0.5 Score=32.33 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.+.+||.||..|-.+|.+|..+|..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4678999999999999888888877653
No 43
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=89.02 E-value=0.44 Score=32.48 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+.+||.||..|-.+|+.|..+|.-|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999988877653
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.69 E-value=3.4 Score=45.46 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
|.+++.++.+...|..+++.++.+...+..|+..|+++++.+.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555556666555555554443
No 45
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.29 E-value=0.51 Score=37.56 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 170 EFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 170 ~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
..+..+|..|+.+|..+++...-.....+.++.|+.+|
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666655554444444455666666554
No 46
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.03 E-value=3 Score=32.84 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 163 SLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 163 ~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..+......|..||..|+.+| +.|++|+..||.+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v--------------~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKV--------------EQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 345556667777777777776 5677888888876
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.92 E-value=1.6 Score=34.60 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038341 194 NAEIADNKAEVGRLRQL 210 (351)
Q Consensus 194 da~~E~Lk~EVqRLR~a 210 (351)
++..+.|++||.-||..
T Consensus 69 E~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 69 ERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34457888888777754
No 48
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=87.86 E-value=2.2 Score=35.25 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038341 195 AEIADNKAEVGRLRQL 210 (351)
Q Consensus 195 a~~E~Lk~EVqRLR~a 210 (351)
-..+.|++|+++||..
T Consensus 75 ~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 75 EDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567999999999986
No 49
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.51 E-value=0.71 Score=31.95 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.+.+||.+|+.|-.+++.|..+|..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999999999988887755
No 50
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.95 E-value=10 Score=30.27 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 038341 127 RVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 127 ReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqR 206 (351)
.+.|..--..-..-+.++|.+...++.++..|..++..++.+...+...-......|..-++...-.++....|.+.|+-
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555666777788888888888888888888888888877777777777777666655556666677777654
Q ss_pred H
Q 038341 207 L 207 (351)
Q Consensus 207 L 207 (351)
|
T Consensus 98 l 98 (101)
T 3u59_A 98 V 98 (101)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.94 E-value=0.82 Score=31.28 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.+.+||.||+.|-.++..|..+|+.|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4678999999999999999988877654
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.72 E-value=4 Score=34.92 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 038341 198 ADNKAEVGRL 207 (351)
Q Consensus 198 E~Lk~EVqRL 207 (351)
..|.+++.+|
T Consensus 120 ~~l~~~~~~l 129 (138)
T 3hnw_A 120 NKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.43 E-value=3.9 Score=42.40 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.+.+|.++||++++.|+.++..-..++..|+.....+..+.+.|...|
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444433444444444444444444444433
No 54
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.03 E-value=0.79 Score=31.74 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
.+.+||.+|+.|-.+++.|..+|..|+.-
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35789999999999999999888777653
No 55
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=86.01 E-value=2.5 Score=34.88 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSL 164 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~ 164 (351)
.|..++..|+.|+..|+.++..
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 56
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.00 E-value=3.5 Score=35.15 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 169 QEFLQKEQRSLSERM 183 (351)
Q Consensus 169 ~~~L~~EN~eLKqrL 183 (351)
...|..|+..|+++|
T Consensus 73 vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 73 VEELEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 57
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=85.88 E-value=1.6 Score=34.38 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
++||.+|..|+.-...|..+++-|..++. .-...||+||..|+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKF 47 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45777777777777777766666655443 3357899999888753
No 58
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.69 E-value=20 Score=32.52 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
|+.++..++.++..|..++..+..+...+..+-..++.+++
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 59
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.46 E-value=1.5 Score=29.90 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+.+||.||+.|-.++..|..+|+.|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999999888877653
No 60
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.15 E-value=19 Score=31.66 Aligned_cols=64 Identities=9% Similarity=0.215 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKE---QRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E---N~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
|..+..++.|..+|++.+ +.+.|.+...+ ...++.|...|+.+..=++...+.|..++.+||.+
T Consensus 78 E~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASL--FDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556665555432 33333333222 22345555556555566677888999999999987
No 61
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=85.06 E-value=1.1 Score=30.73 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.+.+||.+|+.|-.++..|..+|..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4578999999999999999988877754
No 62
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=84.95 E-value=1.6 Score=29.72 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+.+||.||+.|-.++..|..+|..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 578999999999999999988877653
No 63
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=84.64 E-value=0.72 Score=42.81 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 114 SMDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 114 ~~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
..++||.||+|+-=.-=.+-|+-|..-++++=. +..++..+ ...|..||++++.+|+.|+.+
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~-------~~e~~~~~-------i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLW-------QYKSSADK-------MQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTHHHHH-------HHHHHHHHHHHHHSCC-----
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 457999999987555445555444443322222 22233333 344455566666667666544
No 64
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=84.50 E-value=1.2 Score=30.55 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.+.+||.||+.|-.++..|..+|+.|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678999999999999999888877653
No 65
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.11 E-value=1.3 Score=34.23 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 038341 167 NMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 167 ~q~~~L~~EN~eLKqrLqsLe 187 (351)
.+...|..+|..|+.+|.+|.
T Consensus 61 ~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 61 QDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344455556666777776654
No 66
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.07 E-value=6.2 Score=32.84 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTP-------QVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~-------qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
+||+++..++.|+..|+. +|..|..+...|.+||+.|++.=
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777766665 66666666666666666665543
No 67
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=83.88 E-value=4.2 Score=29.79 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 038341 198 ADNKAEVGRL 207 (351)
Q Consensus 198 E~Lk~EVqRL 207 (351)
+.|++||++|
T Consensus 40 ~~Lkeele~L 49 (51)
T 3m91_A 40 LALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3344444433
No 68
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.87 E-value=7.8 Score=47.48 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqR 206 (351)
++..+.+..+|.++++.|+.+...+..|...|+.+++..+......+.++..|..|-.|
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 33344445555555556666666666666666666666554444444444444444433
No 69
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.77 E-value=1.3 Score=30.30 Aligned_cols=28 Identities=7% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.+.+||.||+.|-.+|..|..+|.-|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3578999999999999999888877643
No 70
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.57 E-value=12 Score=32.89 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 146 KKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 146 ~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.-++.|+.|...|..++..++.....|..||..|-+|.
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666666667777777777776665554
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.10 E-value=19 Score=32.13 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----chhhhhH--HHHHH
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN-----NIVFINA--EIADN 200 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ-----q~~lkda--~~E~L 200 (351)
++=.-.|.||.+ .||-..++.++..+.+|..++..|+.....|..|...|...|..=.. ...++|. -+..|
T Consensus 25 EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L 102 (168)
T 3o0z_A 25 ESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL 102 (168)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556655 77777888888888888888888888888887777777666654331 1122222 24578
Q ss_pred HHHHHHHHHH
Q 038341 201 KAEVGRLRQL 210 (351)
Q Consensus 201 k~EVqRLR~a 210 (351)
..|+.|+|..
T Consensus 103 ~~El~~~k~~ 112 (168)
T 3o0z_A 103 QEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 72
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=82.86 E-value=12 Score=30.31 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQ 209 (351)
Q Consensus 198 E~Lk~EVqRLR~ 209 (351)
..+..|+..+++
T Consensus 72 ~~~~~e~d~~k~ 83 (90)
T 2wt7_B 72 SRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 73
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=82.08 E-value=0.91 Score=42.86 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQL 210 (351)
Q Consensus 198 E~Lk~EVqRLR~a 210 (351)
+.|++||++|++-
T Consensus 85 ~~LkeElerL~sP 97 (251)
T 3m9b_A 85 LALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCC
Confidence 6777888887764
No 74
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.01 E-value=2.8 Score=30.71 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
|..|+.||.+|+.+ +..|..++.+|+.+|.
T Consensus 21 ~eaLk~E~~eLk~k-------~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEK-------YEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 44444444444444 4455556666666654
No 75
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=81.98 E-value=12 Score=27.36 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 162 VSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrL 183 (351)
+..|+.+...|..+|..|+.+|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666665555
No 76
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=81.70 E-value=0.12 Score=42.18 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQY 140 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKqY 140 (351)
-+.+||.-+||.+|+++|+||..-
T Consensus 65 IrdiRRRgKNKvAAqnCRKRKld~ 88 (91)
T 2kz5_A 65 VRDIRRRGKNKVAAQNYRKRKLET 88 (91)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 588999999999999999999753
No 77
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=81.65 E-value=2.5 Score=28.29 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
+..||++|.+.+.||-.|..+++.|+.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4678888888888888888877777654
No 78
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=81.49 E-value=3.5 Score=32.23 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
+.++|.+-+.|+..+..|..++..-+.+...+..|-+.+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333
No 79
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=81.38 E-value=6.7 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
++..|+.++..|.++...|.........|...|+..|+.|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444455555555555544
No 80
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=80.66 E-value=8 Score=29.21 Aligned_cols=36 Identities=33% Similarity=0.283 Sum_probs=24.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 124 ESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLT 159 (351)
Q Consensus 124 LkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls 159 (351)
.+||.+++++|.|=++.++-...-...-..||..|+
T Consensus 7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 579999999999988766655444444444554444
No 81
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.48 E-value=17 Score=31.99 Aligned_cols=48 Identities=8% Similarity=0.205 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.+..|+.++.....+...|..++..-+........++..+...|+.|.
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777777766666666666777777776665
No 82
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.35 E-value=16 Score=30.70 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 133 SRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 133 SR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
-+..-..||.+|+.+|..|+.+...-+..... ...||..|+..++.+
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~-------a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQ-------AADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 35556677888888887777776665554444 444455555555444
No 83
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=80.34 E-value=12 Score=29.67 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
.+|-.++..|+.|+.+|+-+++.+..+...|....+++-..|+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666665555555555555444443
No 84
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.83 E-value=11 Score=31.26 Aligned_cols=20 Identities=10% Similarity=0.351 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTP 160 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~ 160 (351)
|.+|-+.|+.|+.|...|..
T Consensus 38 i~elrr~iq~L~~el~~l~~ 57 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKK 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333444444333333333
No 85
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=79.58 E-value=34 Score=30.54 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
+.=+++|.+-.+-+.+|+.++..|+.|...++..... +..||+.|..+|..|+++.
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k-------~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK-------VEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777888777777777666665544 5566777777777776543
No 86
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=79.05 E-value=3.7 Score=32.01 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
..||..|+.+...|+.+...|..+...|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776666655544444333
No 87
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=78.83 E-value=7.5 Score=27.93 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038341 194 NAEIADNKAEVGRLRQL 210 (351)
Q Consensus 194 da~~E~Lk~EVqRLR~a 210 (351)
.-++.-|.+||..||.-
T Consensus 30 kdliaylekeianlrkk 46 (49)
T 3he5_A 30 KDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567788888888753
No 88
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.76 E-value=17 Score=30.49 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=30.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDLEKKAKALEN---QIAMLTPQVSLYQNM 168 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~---ENs~Ls~qv~~Lq~q 168 (351)
-+-.|=.+|.+.=..|..-+.+|..++..+.. .+.-|..|+......
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677877777888888888888777665 444455555554433
No 89
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=77.98 E-value=5.1 Score=36.50 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
+.-|+.|+.||..|+.++.... .|++.|+.+|++++.+.
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~-------~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKA-------TEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Confidence 3447777777777777666544 44555555555555443
No 90
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.84 E-value=9.7 Score=31.69 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQI 155 (351)
Q Consensus 142 eELE~kVq~Lq~EN 155 (351)
.+|-+.|+.|+.|.
T Consensus 41 ~elrr~iq~L~~el 54 (131)
T 3tnu_A 41 SELRRTMQNLEIEL 54 (131)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 91
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.76 E-value=28 Score=28.59 Aligned_cols=49 Identities=8% Similarity=0.212 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
..+..||.++.....+...|..++..-+........++..+...|+.|.
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777665
No 92
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.76 E-value=25 Score=28.14 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 130 AQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 130 AqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+.....+-.+-+.+||..-..+..++..+..+...|..+-.....+-+.++.++-.+.
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666666666666666665555555555555555554443
No 93
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=75.84 E-value=13 Score=29.27 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 159 TPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 159 s~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
..-.+.|.-+.-.|..||+-|.+||+.|.+
T Consensus 45 ~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 45 NKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 333455666677889999999999988765
No 94
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.59 E-value=17 Score=27.95 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
|=+.=|..++.|+.+ |..|+..+..|..||..|+.+|..|
T Consensus 23 fReRK~~~i~~LE~~-------v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 23 FRKRKEDHLKALETQ-------VVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445544444 4444445555667777776666444
No 95
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=75.47 E-value=35 Score=28.52 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+..|+..+..|...+..|...+..|.+.|+.|....+..-.-|+.++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 55677777777777777777777777777777766666655555555
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.04 E-value=23 Score=34.14 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 151 LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
++.|...+.+.....+++...|..||..|+..+..+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 333333344444444444444555555555544444
No 97
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.02 E-value=5.9 Score=38.83 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 038341 169 QEFLQKEQRSLSER 182 (351)
Q Consensus 169 ~~~L~~EN~eLKqr 182 (351)
...+..+.++|+++
T Consensus 26 ~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 26 IKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=74.05 E-value=24 Score=26.02 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+..|+.+...|..+|..|+.+| ..|+.|+..|+.+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei--------------~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEI--------------ANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 4555666666777777777766 4555666666655
No 99
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=73.70 E-value=15 Score=26.61 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 155 IAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 155 Ns~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
|+-|+.+++.|...+-.|....+.|..-|
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekii 33 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKII 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHH
Confidence 44555555555555555555555444333
No 100
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.67 E-value=15 Score=31.34 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 176 QRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 176 N~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
-++|+..|..|.++.+-..+..|+|+++.+-|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 34444444444444333344444444444433
No 101
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=73.61 E-value=44 Score=33.87 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=9.1
Q ss_pred CCCCHHHHHHHHHhhHHH
Q 038341 113 HSMDPKRLRRIESNRVSA 130 (351)
Q Consensus 113 ~~~DpKR~KRiLkNReSA 130 (351)
...|.|.+| .|.+..
T Consensus 39 pmlD~~~ir---~n~~~v 53 (501)
T 1wle_A 39 PLLDMESLC---AYPEDA 53 (501)
T ss_dssp CCCCHHHHH---HSHHHH
T ss_pred CccCHHHHH---hCHHHH
Confidence 466777666 455553
No 102
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=73.37 E-value=4.7 Score=27.61 Aligned_cols=28 Identities=4% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.+.+||.||+.|-.++..|..+|..|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3578999999998888888888877654
No 103
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.24 E-value=17 Score=29.86 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.+.++..|..+..+-..+-.........+..|..+|..-|
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445555544444433
No 104
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.21 E-value=6 Score=31.01 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=17.1
Q ss_pred HHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 180 SERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 180 KqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..+|..+++...-+|.++..|+.|+.++|++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444444455555666666666666554
No 105
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.06 E-value=35 Score=28.60 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 196 EIADNKAEVGRLRQL 210 (351)
Q Consensus 196 ~~E~Lk~EVqRLR~a 210 (351)
.++.|+.|++.|+..
T Consensus 69 e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 69 DCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777766655
No 106
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.86 E-value=9.6 Score=30.04 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 038341 170 EFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 170 ~~L~~EN~eLKqrLqsLe 187 (351)
..|..+|..|+.+|+.|.
T Consensus 69 ~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 69 DLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555666666665553
No 107
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=72.79 E-value=2.6 Score=30.47 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv 162 (351)
..|+++||.++..|+..+..|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999988888877654
No 108
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=72.33 E-value=2.5 Score=35.10 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcch
Q 038341 168 MQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 168 q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
+...|..+|..|..+|+.|+.++
T Consensus 92 ~~~~l~~~n~~L~~riqeLE~~a 114 (118)
T 4ati_A 92 RQKKLEHANRHLLLRVQELEMQA 114 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887654
No 109
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.17 E-value=36 Score=27.22 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 126 NRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 126 NReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
|-+||..+--|-|+-|.+ ++...+..|-.+..++...+.++..|..|...|+.++..
T Consensus 14 eLQSALeaEIqAKQ~i~E---ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSR---EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678887777776665543 233444555555566666666666665555555555544
No 110
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=72.03 E-value=15 Score=26.87 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
|.++..|..-|..|..+|+.|+..+..+..|+..|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 45566666666666666666665555555444333
No 111
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=71.93 E-value=24 Score=25.16 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLq 184 (351)
+...++.+++.++..+..+...+..++..+.........+...++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444444444444444444444444443
No 112
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.88 E-value=7.3 Score=28.48 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038341 168 MQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 168 q~~~L~~EN~eLKqrLqsL 186 (351)
+...|..||.+||.+++.|
T Consensus 20 d~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665333
No 113
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.42 E-value=7.2 Score=38.49 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 149 KALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 149 q~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
..|+.|..+|.+++..++++...+..|+.+++++|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555666666665554
No 114
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=71.34 E-value=27 Score=35.40 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=33.9
Q ss_pred CHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSA-----QKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQN-----------MQEFLQKEQRSL 179 (351)
Q Consensus 116 DpKR~KRiLkNReSA-----qRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~-----------q~~~L~~EN~eL 179 (351)
++..+++.+++|-.. -..=..--+...+|..+++.|+++...+++++..+.. +...|..|-++|
T Consensus 49 n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l 128 (501)
T 1wle_A 49 YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREI 128 (501)
T ss_dssp SHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHH
Confidence 577777777766431 0000001111122334455555555555555555432 223455555555
Q ss_pred HHHHhhhh
Q 038341 180 SERMTTYN 187 (351)
Q Consensus 180 KqrLqsLe 187 (351)
+.+|..++
T Consensus 129 ~~~i~~l~ 136 (501)
T 1wle_A 129 RKQLTLLY 136 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 115
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=71.22 E-value=41 Score=34.71 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhH---HHHHHHHHHHHH
Q 038341 131 QKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINA---EIADNKAEVGRL 207 (351)
Q Consensus 131 qRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda---~~E~Lk~EVqRL 207 (351)
+..+++.++.-..+|.+-+.++.....|.+++..= ....+...++.|..+|+. |+.++++. ..+.|.+||+.|
T Consensus 504 ~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~--~~~~~~e~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~ei~~l 579 (592)
T 1f5n_A 504 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND--RVQLLKEQERTLALKLQE--QEQLLKEGFQKESRIMKNEIQDL 579 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666777777777654332 122333334455555533 33344433 355888999888
Q ss_pred HHH
Q 038341 208 RQL 210 (351)
Q Consensus 208 R~a 210 (351)
+..
T Consensus 580 ~~~ 582 (592)
T 1f5n_A 580 QTK 582 (592)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 116
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=70.98 E-value=4.1 Score=38.47 Aligned_cols=9 Identities=33% Similarity=0.191 Sum_probs=4.9
Q ss_pred CCCCCcccc
Q 038341 244 PGPGQMVYA 252 (351)
Q Consensus 244 ~~p~q~~~~ 252 (351)
=.||+.|-.
T Consensus 135 LkPG~rVaL 143 (251)
T 3m9b_A 135 LKKGQTVRL 143 (251)
T ss_dssp SCSSCEEEE
T ss_pred CCCCCEEEe
Confidence 346665544
No 117
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=70.52 E-value=43 Score=28.35 Aligned_cols=28 Identities=32% Similarity=0.317 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQ 169 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~ 169 (351)
.+|+.+++.|+..|..|..++..+..+.
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444444
No 118
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=70.42 E-value=27 Score=26.08 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 137 KLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQE 170 (351)
Q Consensus 137 KKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~ 170 (351)
|-..+.+||.++..++.-.+.+..++..+.....
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~le 37 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALA 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456788899998888777766555555444333
No 119
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=69.75 E-value=6.9 Score=30.31 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKAL---ENQIAMLTPQ---VSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~L---q~ENs~Ls~q---v~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.+-++-|.+=..++.+|..-|-.. .....-|..- +..|+.+...|..|+..|+.+++..
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455556665543321 1111222222 2334566666666666666666543
No 120
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.34 E-value=7.6 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
.||..|+.+++.|+.+...|..++..|+.+
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555554444444444443
No 121
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=68.93 E-value=5.7 Score=34.25 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038341 172 LQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQ 216 (351)
Q Consensus 172 L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQq 216 (351)
+...|..|+-++++++....+-.+-...-+..+..|+.+ |.+.
T Consensus 53 ~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~A--Y~~L 95 (130)
T 3cl3_D 53 HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVA--YHQL 95 (130)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 455667777777777777666666566666667777777 6665
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=68.89 E-value=33 Score=32.91 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhcchhhhhHH--HHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQE----FLQKEQRSLSERMTTYNNNIVFINAE--IADNKAEVGRLRQL 210 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~----~L~~EN~eLKqrLqsLeQq~~lkda~--~E~Lk~EVqRLR~a 210 (351)
....+.+.....|+.+..++.+.+..++.+.. ..++-...|..+... +++.+++.+ +..|..+++.++.-
T Consensus 390 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 390 RAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ--GQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346677777777777777777777665533 333333344333333 223343333 33566666666543
No 123
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=68.76 E-value=26 Score=25.72 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSL 164 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~ 164 (351)
.+|..+|+.|..++..|+..+..
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 124
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=68.62 E-value=22 Score=28.23 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038341 145 EKKAKALENQIAMLTP 160 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~ 160 (351)
-+.|..|-.||.+|..
T Consensus 8 gkevEnLi~EN~eLl~ 23 (77)
T 2w83_C 8 GREVENLILENTQLLE 23 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555556655543
No 125
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=68.03 E-value=19 Score=44.26 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..++.+.+++.+++.++.+...|.++.+.+.++...|..|-...+.+|+.-++-.---..+.+++++.+..|+..
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~ 2099 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQ 2099 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 334445555555666666666666666666666666666666666666654433333344456777777776653
No 126
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=68.02 E-value=33 Score=25.09 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038341 163 SLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 163 ~~Lq~q~~~L~~EN~eLKqrL 183 (351)
..|+.....|..+|..|+.+|
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555554444
No 127
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.82 E-value=33 Score=28.41 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~ 163 (351)
.|+.++..+...+..|...+.
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333333333333333333333
No 128
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.24 E-value=37 Score=27.00 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038341 159 TPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 159 s~qv~~Lq~q~~~L~~EN~eL 179 (351)
-.+|..|+++|..|.++...|
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 129
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=67.12 E-value=14 Score=29.65 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
..||..|...++.+..+ ..+...|...|+.|..||+.||-++
T Consensus 38 vdYI~~Lq~e~~r~~e~-----------e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDL-----------ENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHTHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 57777776666544333 3344567888888988988887554
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.03 E-value=23 Score=32.27 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
|..|-.++..|..++.....++..|+++...|..+-..++.++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4445554444555555555555555544444444444444443
No 131
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=66.97 E-value=45 Score=33.19 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.6
Q ss_pred cccccc
Q 038341 277 KQVPVL 282 (351)
Q Consensus 277 ~q~~~~ 282 (351)
...|+|
T Consensus 215 v~tP~l 220 (455)
T 2dq0_A 215 VIPPYM 220 (455)
T ss_dssp EECCSE
T ss_pred EeCCcc
Confidence 344443
No 132
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.38 E-value=37 Score=33.87 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
-+|.++||+++..|+..+..--..|..|+.....+..+.+.|...|+....-+
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C 164 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSC 164 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46778888888888876666555777777777777777777777775444333
No 133
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=65.05 E-value=40 Score=27.58 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 038341 125 SNRVSAQKSRMKKLQYVTDLEKKAKALE---NQIAMLTPQVSLYQNM 168 (351)
Q Consensus 125 kNReSAqRSR~RKKqYIeELE~kVq~Lq---~ENs~Ls~qv~~Lq~q 168 (351)
.+-.+|-.+=..|...|.+|-..+..++ ..+.-|..|+......
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~D 55 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKAD 55 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667777777766665555 3333344554444433
No 134
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=65.01 E-value=6.6 Score=31.16 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 154 QIAMLTPQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 154 ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
|...|+.++..|..++..|..||.-||.-
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777777778888888888764
No 135
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=65.00 E-value=30 Score=25.78 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 038341 168 MQEFLQKEQRSLSERMT 184 (351)
Q Consensus 168 q~~~L~~EN~eLKqrLq 184 (351)
+...|..+|..|+.+++
T Consensus 38 ~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 38 KVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 136
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=64.98 E-value=62 Score=28.31 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 038341 199 DNKAEVGRLR 208 (351)
Q Consensus 199 ~Lk~EVqRLR 208 (351)
.|.++|.+|.
T Consensus 102 kLEk~id~lE 111 (155)
T 2efr_A 102 KLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 137
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=64.84 E-value=13 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 153 NQIAMLTPQVSLYQNMQEFLQKEQRSLS 180 (351)
Q Consensus 153 ~ENs~Ls~qv~~Lq~q~~~L~~EN~eLK 180 (351)
.||..|...++.-+.+...|..||.+|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5788888888888888888888888775
No 138
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=64.70 E-value=31 Score=26.92 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv 162 (351)
.|.+||.++.....++.+|..++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554444444
No 139
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=64.66 E-value=22 Score=27.72 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+||.++..|+...+-+..-|..|..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~ 35 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444444433
No 140
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.30 E-value=29 Score=36.13 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 038341 195 AEIADNKAEVGRLRQL 210 (351)
Q Consensus 195 a~~E~Lk~EVqRLR~a 210 (351)
..++.+..||+||...
T Consensus 138 snLedq~~kIQRLEvD 153 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4457777888888776
No 141
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=64.12 E-value=17 Score=27.33 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKEQR 177 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~ 177 (351)
|+++..|...|-.|-.+|..|+.++.....|+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEie 42 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIE 42 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666555554444443
No 142
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=64.09 E-value=39 Score=33.15 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhh
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNM--------QEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q--------~~~L~~EN~eLKqrLqsL 186 (351)
..+.+|..+...++.+..+|+++...+.++ ...|..+-++|+.+|..+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRL 83 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444444444332 234444444555554444
No 143
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=63.93 E-value=31 Score=34.30 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.8
Q ss_pred hhHHHHH
Q 038341 126 NRVSAQK 132 (351)
Q Consensus 126 NReSAqR 132 (351)
|.+..++
T Consensus 10 n~~~~~~ 16 (455)
T 2dq0_A 10 NPELVKN 16 (455)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4444333
No 144
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=63.86 E-value=32 Score=34.88 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=7.6
Q ss_pred CHHHHHHHHHhh
Q 038341 116 DPKRLRRIESNR 127 (351)
Q Consensus 116 DpKR~KRiLkNR 127 (351)
++..+|..+++|
T Consensus 14 n~~~v~~~~~~R 25 (485)
T 3qne_A 14 DPEIIKASQKKR 25 (485)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 566666666666
No 145
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=63.72 E-value=30 Score=26.89 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLY------QNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~L------q~q~~~L~~EN~eLKqrLqsLe 187 (351)
++.||.++..|+.+...|..++..- -.....|..+..+++..|+.+.
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999988642 1345566666666666665554
No 146
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=63.28 E-value=45 Score=30.88 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 115 MDPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQ 176 (351)
Q Consensus 115 ~DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN 176 (351)
.+...+|+-|+.|..+-++ -+..|+.+++..+.|+..+.++++..+++...+...-
T Consensus 160 asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999888887765 3578899999999999999999988887766665443
No 147
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.15 E-value=49 Score=25.35 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKE 175 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E 175 (351)
+.++.+++..+.....+...|..|++....|..+
T Consensus 23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 148
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=63.07 E-value=6 Score=31.42 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 177 RSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 177 ~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..||.+|..|+.. +..|..|-..||..
T Consensus 18 evLKe~I~EL~e~-------~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEK-------NSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 3455555554422 34566666677776
No 149
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=62.62 E-value=53 Score=30.89 Aligned_cols=58 Identities=9% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVG 205 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVq 205 (351)
++-|+.+..-...|+.++-.+++.|.. -.+.+-+||+.+++++..-+.....++..+.
T Consensus 165 LelL~IRK~ma~sEI~EID~KI~~L~~-------mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 165 LEFLNIQKNSTLSEIRDIEVEVENLRQ-------KKEKLLGKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655433 3345566777777776666666555555443
No 150
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=62.60 E-value=4 Score=29.77 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLT 159 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls 159 (351)
..|+++||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999998887766554
No 151
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=62.58 E-value=11 Score=27.48 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
+..|+.+...|..||..|+.++..|.+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666666666554
No 152
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=62.53 E-value=35 Score=28.33 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHh
Q 038341 114 SMDPKRLRRIESN 126 (351)
Q Consensus 114 ~~DpKR~KRiLkN 126 (351)
.+++|-.|-|+.|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666654
No 153
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=61.40 E-value=32 Score=28.55 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=1.5
Q ss_pred HHHHHH
Q 038341 143 DLEKKA 148 (351)
Q Consensus 143 ELE~kV 148 (351)
++|.|.
T Consensus 6 EvEEKy 11 (103)
T 4h22_A 6 EVEEKY 11 (103)
T ss_dssp --CCTH
T ss_pred HHHHHH
Confidence 333333
No 154
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.11 E-value=9.1 Score=37.86 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 151 LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
+...+.+|..++..|+++...|..|+..|+.++..+..+ .+.+++|+.+|+.
T Consensus 40 l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e-------~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 40 LSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRE-------LKRAQEEVKRIQS 91 (428)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcC
Confidence 334444455555555555555666666555554433221 3456666655544
No 155
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.28 E-value=19 Score=31.12 Aligned_cols=47 Identities=9% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+.+|...+.....+...|..++..-+........++..+...|+.|.
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555666666555554455555555555555555554
No 156
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=60.22 E-value=22 Score=27.53 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 156 AMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 156 s~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
..|..+...+..+...|..|+.+|+.+|+.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555556666666666666654
No 157
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=60.11 E-value=30 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~ 163 (351)
..||..|+.+++.|+.++..|..++.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666655555443
No 158
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.87 E-value=14 Score=36.54 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.+|..+++.|+.+...|..+...++.+...+..|...++.++..+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555444
No 159
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=59.32 E-value=28 Score=27.93 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 154 QIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 154 ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
||..|..+|..++.+...|..+|.+|+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666665543
No 160
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=59.19 E-value=4.6 Score=37.26 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 172 LQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 172 L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
|..||++||.+++.|+++ ....+.|++|.+|||.+
T Consensus 24 l~~eN~~Lk~e~~~l~~~----~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQL----ESEVADLKKENKDLKES 58 (255)
T ss_dssp --CTTTTHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 334444444444444322 12346788888899887
No 161
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=58.38 E-value=27 Score=25.48 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 169 QEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 169 ~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
...|..=|..|-.+++.|+..+ ..+..||+||+.+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c-------~~~eQEieRL~~L 40 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSC-------SEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHH
Confidence 3444444555555665554332 4566888999887
No 162
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=58.31 E-value=37 Score=30.08 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLR 208 (351)
Q Consensus 197 ~E~Lk~EVqRLR 208 (351)
+++|.+||..||
T Consensus 115 I~aL~~Ei~~Lr 126 (175)
T 3lay_A 115 INAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 163
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.93 E-value=15 Score=31.83 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQK---EQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~---EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.|.....++.|..+|++.+ +.+.|.+... +...++.+...|+.+..=++.+.+.+...+..||.+
T Consensus 65 aE~~~~~ie~ElE~LTasL--FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 65 AEEEADKLNKEVEDLTASL--FDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666532 3333333332 333456666666666666777888899999999886
No 164
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.74 E-value=69 Score=30.82 Aligned_cols=8 Identities=13% Similarity=-0.035 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 038341 138 LQYVTDLE 145 (351)
Q Consensus 138 KqYIeELE 145 (351)
-++++.+.
T Consensus 373 e~~~~~~~ 380 (487)
T 3oja_A 373 DEQVSNGR 380 (487)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 165
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.43 E-value=85 Score=26.32 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 176 QRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 176 N~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..-|++++.....+-..-.+--|.+..|+++|..-
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~q 98 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHH
Confidence 44455555555544444444455666666665544
No 166
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=57.02 E-value=19 Score=24.57 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 038341 172 LQKEQRSLSERM 183 (351)
Q Consensus 172 L~~EN~eLKqrL 183 (351)
|..+|..|..+|
T Consensus 19 lkrQN~~Le~Qi 30 (34)
T 1a93_B 19 LKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 167
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=55.96 E-value=1.4e+02 Score=29.66 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
.+.|+.+-.+|+.+..+...|...+...
T Consensus 40 l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 40 LLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555555444433
No 168
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=55.92 E-value=12 Score=27.45 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~ 163 (351)
|+.++...+..|..||.+|+.++.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 169
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.87 E-value=43 Score=26.27 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038341 131 QKSRMKKLQYVTDLEKKAKAL 151 (351)
Q Consensus 131 qRSR~RKKqYIeELE~kVq~L 151 (351)
...+..+..-+.+++.-...|
T Consensus 26 ~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 26 VQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 170
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=55.47 E-value=87 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 038341 126 NRVSAQKSRMKKLQYVTD 143 (351)
Q Consensus 126 NReSAqRSR~RKKqYIeE 143 (351)
.|-..+..|+.|+.||++
T Consensus 15 ~~~k~q~e~EeKkkiLaE 32 (107)
T 1ytz_T 15 KRGKKQTARETKKKVLAE 32 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 344555566667777774
No 171
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=54.94 E-value=1.1e+02 Score=26.81 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 165 YQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 165 Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+..+...|..+..+|...++.|+.+.+|.++.-..|++++...|.+
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReA 130 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREA 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTC-----------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444555556666677788888888888888888888888777776
No 172
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=54.75 E-value=75 Score=24.85 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
-..+||.+...|..+...|..+++.+...+..|.....+|..+|..++
T Consensus 36 ~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 36 IKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888877778888888877777777776553
No 173
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=54.71 E-value=34 Score=31.52 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 153 NQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 153 ~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.||..|..+|..++.+...|..||.+|+.=+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888886544
No 174
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=54.18 E-value=37 Score=33.34 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=26.8
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKE 175 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E 175 (351)
|.|.+| .|-+..+++-.++..-+ + -.++..|-.+-.++..++..|+.+...+..+
T Consensus 3 d~~~~r---~~~~~~~~~~~~r~~~~-~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 3 DLKRLR---QEPEVFHRAIREKGVAL-D-LEALLALDREVQELKKRLQEVQTERNQVAKR 57 (421)
T ss_dssp CHHHHH---HCHHHHHHHHHHHTCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHH---hCHHHHHHHHHHhCCCc-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 35555555444433222 2 2445555555555665555555555555433
No 175
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=54.17 E-value=41 Score=27.30 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
.|+++++.|+.....|...+..++.+...+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333
No 176
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=53.38 E-value=1.1e+02 Score=26.59 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.+.+|.+++.|+........+..+..+....|..+...|..+|
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444444444444444444444444
No 177
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.28 E-value=78 Score=26.17 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----chhhhhHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQ--IAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNN-----NIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 141 IeELE~kVq~Lq~E--Ns~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ-----q~~lkda~~E~Lk~EVqRLR~a 210 (351)
+..|++.|..|-+. ..+|+.+|..+......|..+-.+.-.+|..+.. +..-+....+.|.+|....-..
T Consensus 30 vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~dF~~~L~~ 106 (130)
T 2dnx_A 30 TAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNN 106 (130)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777776643 5678888888888888888888888788877641 1122333456666665443333
No 178
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=53.05 E-value=33 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 153 NQIAMLTPQVSLYQNMQEFLQKEQRSLSE 181 (351)
Q Consensus 153 ~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKq 181 (351)
.||..|..++..++.+...|..||.+|+.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777777776643
No 179
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=53.04 E-value=82 Score=24.80 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038341 166 QNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 166 q~q~~~L~~EN~eLKqrL 183 (351)
..+...|..|...|+-++
T Consensus 26 q~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 333333333333333333
No 180
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.19 E-value=1.1e+02 Score=31.32 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038341 194 NAEIADNKAEVGRLRQL 210 (351)
Q Consensus 194 da~~E~Lk~EVqRLR~a 210 (351)
...++.+..+|+||+..
T Consensus 138 q~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 138 QNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33456777778888776
No 181
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=52.08 E-value=60 Score=31.09 Aligned_cols=73 Identities=8% Similarity=0.115 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..-+.++..|...+...+.+...+...|..++.. |......|+.....+.....-..+.++.|++||+.|+..
T Consensus 119 ~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~---l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 119 ETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDS---IGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGS 191 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3345566666666666666666666666655443 334444455555555544444456678999999999887
No 182
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=51.99 E-value=37 Score=32.77 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=9.4
Q ss_pred HHHHHHHhccccccccccc
Q 038341 265 IEEILRLHQHKMKQVPVLC 283 (351)
Q Consensus 265 ~~~~~~~~~~~~~q~~~~~ 283 (351)
.|-|-.|...+.-.|-|-.
T Consensus 152 le~ih~LT~~~~~eLrI~L 170 (323)
T 1lwu_C 152 NEKIHLLTGQQAYRLRIDL 170 (323)
T ss_dssp HHHHHHHHTTSCEEEEEEE
T ss_pred ccceeccccCCCeEEEEEE
Confidence 4556666554444444433
No 183
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=51.82 E-value=22 Score=29.82 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 038341 140 YVTDLEKKA 148 (351)
Q Consensus 140 YIeELE~kV 148 (351)
|+.+.+..+
T Consensus 8 ~~~~~~~~l 16 (171)
T 2zvf_A 8 AVEEMERLL 16 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 184
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=51.81 E-value=1.1e+02 Score=25.94 Aligned_cols=26 Identities=4% Similarity=-0.045 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 191 VFINAEIADNKAEVGRLRQLHLYQQQLK 218 (351)
Q Consensus 191 ~lkda~~E~Lk~EVqRLR~a~i~qQqq~ 218 (351)
.++......|......+=.- ||..|.
T Consensus 122 Rir~~q~~~L~~kf~~~m~~--yq~~q~ 147 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEVMSD--YNTTQI 147 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 35566667777777666555 665554
No 185
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.43 E-value=82 Score=31.97 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhhh
Q 038341 172 LQKEQRSLSERMTTY 186 (351)
Q Consensus 172 L~~EN~eLKqrLqsL 186 (351)
|..|-++|+.+|..+
T Consensus 76 l~~~~~~l~~~i~~l 90 (485)
T 3qne_A 76 LIAEKEKLSNEKKEI 90 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 186
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.06 E-value=40 Score=33.17 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv 162 (351)
+|+++++.++.++..+.+++
T Consensus 21 ~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 21 ELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 187
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.01 E-value=1.1e+02 Score=25.20 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
..|+.++..+...+..|...+..+
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444444444433
No 188
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=49.98 E-value=14 Score=28.26 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 038341 140 YVTDLEK 146 (351)
Q Consensus 140 YIeELE~ 146 (351)
||..|+.
T Consensus 58 YI~~L~~ 64 (80)
T 1hlo_A 58 YIQYMRR 64 (80)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 189
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=49.65 E-value=67 Score=22.79 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
..|+..+..+..+...+..++..+......+..+.+..+..|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444444444444444444443333
No 190
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.28 E-value=81 Score=25.17 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
-..|+.+++.-+ .++.+++.++..+..+..+.++.+.+...|. +..+.|++++..||
T Consensus 16 QSALeaEIqAKQ----~i~EELs~vr~~ni~~eskL~eae~rn~eL~-------~e~~~l~~~~eelq 72 (81)
T 1wt6_A 16 QEALEEEVLTRQ----SLSREMEAIRTDNQNFASQLREAEARNRDLE-------AHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 345555544332 2333444444444444444444444444442 23456666666554
No 191
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=49.26 E-value=40 Score=22.83 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 156 AMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 156 s~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+.|.+++..|.++.-.|+-.-..||.++.+|.
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777888888888888877653
No 192
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=48.65 E-value=1.2e+02 Score=25.50 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhhhhHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY-NNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL-eQq~~lkda~~E~Lk~EVqRL 207 (351)
+..+..++..|..++..|...+..|..+..+++...+.+ .....-+.++.+.|+.....+
T Consensus 45 ~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~~ 105 (155)
T 2oto_A 45 AGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEAL 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555555444444 333333333444444444433
No 193
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=48.62 E-value=49 Score=26.25 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 153 NQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 153 ~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
.||..|..+|..++.+...|..||..|+.=+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888775543
No 194
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=48.60 E-value=9.6 Score=32.05 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv 162 (351)
+++|+.+++.|+.||..|+.+|
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554
No 195
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=48.44 E-value=1.3e+02 Score=25.77 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=31.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 118 KRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 118 KR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
.|.++.|-||.-+...| |..||.+++........--.+...+.+....+..+......|+...
T Consensus 37 eR~~k~lE~r~~~deEr------~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a 99 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEK------MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 99 (147)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777766554 3445555554444444444444444444444444444444444433
No 196
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=48.14 E-value=90 Score=23.82 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
..|+............+..++.........+..|...|+.+|+.++.+
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555666666666666665543
No 197
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=47.06 E-value=1.1e+02 Score=24.63 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=17.7
Q ss_pred HHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 178 SLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 178 eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.|..-|..+-+--+--.+....|.++|+++|..
T Consensus 48 ~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333333333344456777777777777
No 198
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=46.97 E-value=10 Score=34.92 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 038341 169 QEFLQKEQRSLSERMT 184 (351)
Q Consensus 169 ~~~L~~EN~eLKqrLq 184 (351)
...|..||..|+.-|.
T Consensus 45 ~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 45 VADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456667777766554
No 199
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.47 E-value=1.1e+02 Score=24.63 Aligned_cols=8 Identities=38% Similarity=0.310 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 038341 199 DNKAEVGR 206 (351)
Q Consensus 199 ~Lk~EVqR 206 (351)
.|+.|+.+
T Consensus 73 ~L~~el~K 80 (98)
T 2ke4_A 73 RLKLEVQK 80 (98)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 200
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=46.39 E-value=12 Score=31.48 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 162 VSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 162 v~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
++.|..+...|.+||+.||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667778899999999999973
No 201
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.26 E-value=1e+02 Score=24.02 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSER 182 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqr 182 (351)
..+..++.++..+.............|...+..|..|...|..+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544555555555555555555555444
No 202
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=46.11 E-value=1.2e+02 Score=24.75 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+...|.-+..-+..+.+|...+..++. .......|+.++.....+-..-.+--|.+..|.++|..-
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~~----~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~q 76 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHKI----VMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444455555554444332 224556677777776666655556666777777666654
No 203
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.97 E-value=63 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 139 QYVTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 139 qYIeELE~kVq~Lq~ENs~Ls~qv 162 (351)
.||..|+.+...++.+...|..+.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n 75 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444444443333333
No 204
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=45.39 E-value=57 Score=25.56 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
|.+|.+++..+..+++.|..++.-++..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~ 29 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAED 29 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4567777777777777776666555433
No 205
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=45.23 E-value=56 Score=27.16 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 038341 171 FLQKEQRSLSERMTTYN 187 (351)
Q Consensus 171 ~L~~EN~eLKqrLqsLe 187 (351)
.|..+..+||..++.|+
T Consensus 22 ~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 206
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=44.89 E-value=64 Score=30.34 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNI 190 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~ 190 (351)
..-|.++..|++.|...-..+..+|+.|++.=..|.-+...++.||+-++...
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy~ 228 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYG 228 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34688999999999999999999999999999999999999999998877543
No 207
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=44.65 E-value=56 Score=22.44 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038341 165 YQNMQEFLQKEQRSLSERMT 184 (351)
Q Consensus 165 Lq~q~~~L~~EN~eLKqrLq 184 (351)
.-.....|..+|+.|..+|.
T Consensus 18 yidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 18 YIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666655554
No 208
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.62 E-value=94 Score=23.08 Aligned_cols=18 Identities=6% Similarity=0.111 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 038341 168 MQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 168 q~~~L~~EN~eLKqrLqs 185 (351)
.......|..+|+..|++
T Consensus 50 ~l~~~k~Ei~elrr~iq~ 67 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQS 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555533
No 209
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=44.58 E-value=1.6e+02 Score=27.27 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-hhhhhHHHHHHHHHHH
Q 038341 128 VSAQKSRMKKLQYVTDLEKKAKALENQIA-MLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN-IVFINAEIADNKAEVG 205 (351)
Q Consensus 128 eSAqRSR~RKKqYIeELE~kVq~Lq~ENs-~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq-~~lkda~~E~Lk~EVq 205 (351)
..|...|.|=..++++|-.++.-+-.+.. .|...+..++. .|..-...++++++.+.+. .-.-+..+..|..+++
T Consensus 165 ~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~---~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e 241 (273)
T 3s84_A 165 KNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQME 241 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 45566666666666666666654432221 12222222322 2333345666666666533 2333445566666666
Q ss_pred HHHHH
Q 038341 206 RLRQL 210 (351)
Q Consensus 206 RLR~a 210 (351)
.||..
T Consensus 242 ~l~~~ 246 (273)
T 3s84_A 242 QLRQK 246 (273)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 210
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=44.04 E-value=39 Score=22.27 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
+.||.++..|+.....|..+++.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665555555555544443
No 211
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=43.89 E-value=49 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
..|++.|.+.|..+...+.-+..|.-++..+
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556667777777776666555555555443
No 212
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=43.80 E-value=75 Score=23.22 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNMQE 170 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q~~ 170 (351)
++..|..+..+|..+|..|..+..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~ 28 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDAN 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444333
No 213
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=43.78 E-value=30 Score=23.10 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
+.||..+..|++-..+|.+++..|+.
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666655555443
No 214
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=43.73 E-value=1.7e+02 Score=25.69 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH------HHHH-HHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQK---EQ------RSLS-ERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~---EN------~eLK-qrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
+..|..+-..-+.|...|++++..+++....... .| +.|- .+|-.|+.+..-+|...|.|+.-|.-||
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~Lr 125 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILR 125 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHH
Confidence 3444444444455566666666666554332211 11 1111 1344455555556665555555444443
No 215
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=43.61 E-value=1.1e+02 Score=23.56 Aligned_cols=20 Identities=5% Similarity=0.265 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQI 155 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~EN 155 (351)
....-|..||..+..++.+.
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 216
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=43.53 E-value=1.2e+02 Score=23.94 Aligned_cols=50 Identities=8% Similarity=0.126 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHH
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSLY--Q-NMQEFLQKEQRSLSERM 183 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~L--q-~q~~~L~~EN~eLKqrL 183 (351)
-..|++.|.+.|..+.....-+..|.-++..+ . .....+...-+.+|..|
T Consensus 29 ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl 81 (97)
T 3onj_A 29 LSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTI 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 34667778888888877777777777776666 2 22334444444444444
No 217
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=43.41 E-value=1.2e+02 Score=23.92 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038341 192 FINAEIADNKAEVGRLRQLHLYQQQ 216 (351)
Q Consensus 192 lkda~~E~Lk~EVqRLR~a~i~qQq 216 (351)
++......|......+=.- ||..
T Consensus 92 ir~~q~~~L~~kf~e~m~~--y~~~ 114 (127)
T 1ez3_A 92 IRKTQHSTLSRKFVEVMSE--YNAT 114 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4455555555555444444 4443
No 218
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=43.31 E-value=82 Score=28.83 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
|+=.|+++..|+.+|..|+.+++.|-. ...+|..+-.++..+.
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~ 109 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLV 109 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 456677777777777777777766533 4556666666665554
No 219
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=43.27 E-value=1.9e+02 Score=29.33 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQ 161 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~q 161 (351)
.+|..+-..++.+..+|+++
T Consensus 40 ~~ld~~~r~~~~~~~~l~~~ 59 (484)
T 3lss_A 40 IEADKKWRRTQFLTEASKKL 59 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444333333333333333
No 220
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=42.40 E-value=70 Score=25.63 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 172 LQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 172 L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
--.||..|..+|..++. .+..|++|.+.||.+
T Consensus 44 aL~EN~~Lh~~ie~l~e-------Ei~~lk~en~eL~el 75 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDN-------EIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34578888888777643 356778888888877
No 221
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.32 E-value=1.4e+02 Score=24.36 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 129 SAQKSRMKKLQYVTDLEKKAKALE 152 (351)
Q Consensus 129 SAqRSR~RKKqYIeELE~kVq~Lq 152 (351)
+++.++.=....+.+|+.+|..++
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555566666666544
No 222
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.90 E-value=1.5e+02 Score=24.46 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQ 209 (351)
Q Consensus 199 ~Lk~EVqRLR~ 209 (351)
.|..+|..|+.
T Consensus 108 kle~e~~~Lk~ 118 (129)
T 2fxo_A 108 KLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 223
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=41.88 E-value=44 Score=25.23 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHH--HHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEI--ADNKAEVGR 206 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~--E~Lk~EVqR 206 (351)
+..||.+|+.|+.....|-- -.....|...-.+||.+|+.|----.++.... ..|.+||..
T Consensus 4 vkaleekvkaleekvkalgg-----ggrieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGG-----GGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----SSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 34566677666554433211 01123345555678888888874444443332 355555543
No 224
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.84 E-value=61 Score=32.23 Aligned_cols=9 Identities=22% Similarity=0.165 Sum_probs=4.5
Q ss_pred HHHHHHHhc
Q 038341 265 IEEILRLHQ 273 (351)
Q Consensus 265 ~~~~~~~~~ 273 (351)
.|-|-.|..
T Consensus 230 le~ih~LT~ 238 (409)
T 1m1j_C 230 NEKIHLITT 238 (409)
T ss_dssp HHHHHHHHT
T ss_pred ccceeeccc
Confidence 355555554
No 225
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=41.45 E-value=2.4e+02 Score=28.11 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQN------------------MQEFLQKEQRSLSERMTTYNNNIVFINAEIADNK 201 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~------------------q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk 201 (351)
-|.+||..|..+...-++...-|..++. ....+..|...|..-|...+.+........+...
T Consensus 39 ~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 118 (411)
T 3ghg_C 39 DLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNN 118 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3566666666665555555444444432 1122333333333333333333223333455666
Q ss_pred HHHHHHHHH
Q 038341 202 AEVGRLRQL 210 (351)
Q Consensus 202 ~EVqRLR~a 210 (351)
..|+.|+..
T Consensus 119 ~~i~~L~~~ 127 (411)
T 3ghg_C 119 QKIVNLKEK 127 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777777
No 226
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.33 E-value=17 Score=37.26 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=4.6
Q ss_pred HHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 182 RMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 182 rLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.+..|.++..-++.+.+.|+.|+.+.|.+
T Consensus 420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 420 EVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp ----------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666777777666665
No 227
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=40.87 E-value=29 Score=25.28 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 164 LYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 164 ~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
.+......|..||.+|+.+++.++.
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777888888888877653
No 228
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.80 E-value=97 Score=30.36 Aligned_cols=7 Identities=29% Similarity=0.064 Sum_probs=3.2
Q ss_pred ccccccc
Q 038341 276 MKQVPVL 282 (351)
Q Consensus 276 ~~q~~~~ 282 (351)
....|+|
T Consensus 193 ev~tP~l 199 (425)
T 2dq3_A 193 EICPPHL 199 (425)
T ss_dssp EEECCSE
T ss_pred EEECCcc
Confidence 3444554
No 229
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.46 E-value=2.9e+02 Score=27.59 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 038341 198 ADNKAEVGRLR 208 (351)
Q Consensus 198 E~Lk~EVqRLR 208 (351)
+.+..+|+||.
T Consensus 144 ~~q~~kiqRLE 154 (390)
T 1deq_A 144 RDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 230
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.23 E-value=0.65 Score=37.89 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 038341 117 PKRLRRIESNRVSAQKSRMKKLQ 139 (351)
Q Consensus 117 pKR~KRiLkNReSAqRSR~RKKq 139 (351)
-+.+||.-+||.+|+++|+||..
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHhhhhHHHHHHcchhhcc
Confidence 47788899999999999999864
No 231
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=40.05 E-value=40 Score=22.22 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 038341 171 FLQKEQRSLSERM 183 (351)
Q Consensus 171 ~L~~EN~eLKqrL 183 (351)
.|..||++||.++
T Consensus 10 sleaenkqlkakv 22 (31)
T 1p9i_A 10 SLEAENKQLKAKV 22 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 232
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.65 E-value=43 Score=25.77 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~ 167 (351)
.|...|.+||..+..-..++.+|+.++..++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888877665543
No 233
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=39.24 E-value=84 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
..||..|...+.++..|..++..++.+
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~ 41 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQF 41 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 334445554444444444444443333
No 234
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=39.18 E-value=20 Score=33.06 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 038341 172 LQKEQRSLSERM 183 (351)
Q Consensus 172 L~~EN~eLKqrL 183 (351)
+..+.+.|...+
T Consensus 153 ~~~~i~ql~~En 164 (250)
T 2ve7_C 153 SADKMQQLNAAH 164 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 235
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=39.10 E-value=22 Score=27.82 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
|..++..++..+..|..=+..-...+..|..+|+-||..|-.
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRR 61 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRR 61 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444433
No 236
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=38.95 E-value=1.4e+02 Score=23.50 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 038341 158 LTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRL 207 (351)
Q Consensus 158 Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRL 207 (351)
-.+++..|.+....|..-.+.|+.-|..|+++..--+.-++.|++..+.|
T Consensus 23 ~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 23 AQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333333333444433333
No 237
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=38.88 E-value=2e+02 Score=25.17 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=4.9
Q ss_pred HHHHHHHHhhh
Q 038341 176 QRSLSERMTTY 186 (351)
Q Consensus 176 N~eLKqrLqsL 186 (351)
|..|+..|..+
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 238
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=38.83 E-value=61 Score=27.07 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
+.|+++++.|+.....|...+..++.+...+...-+++
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333
No 239
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=38.54 E-value=1.2e+02 Score=22.48 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 158 LTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 158 Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
|..++..++.-...+..+-..+...++++.++..+-...++.|+..|.+|.
T Consensus 11 le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 11 LEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 444444444433333333334444444444444444444555555555544
No 240
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.50 E-value=39 Score=27.13 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 038341 199 DNKAEVGRLR 208 (351)
Q Consensus 199 ~Lk~EVqRLR 208 (351)
.|..||.--|
T Consensus 76 ~Le~EIatYr 85 (95)
T 3mov_A 76 ALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444554333
No 241
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=38.19 E-value=1.6e+02 Score=23.85 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQ 166 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq 166 (351)
++.|.+|..=-.|...++..|-.|+
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE 63 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERE 63 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665544444444444444433
No 242
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=38.16 E-value=20 Score=36.64 Aligned_cols=25 Identities=0% Similarity=0.121 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
..+||.++..++.+.......+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEA 361 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777776666555544433
No 243
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=38.07 E-value=1.1e+02 Score=24.45 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 038341 135 MKKLQYVTDLEKKAKALENQIAMLTPQVSLYQN-MQEFLQKEQRSLSERM 183 (351)
Q Consensus 135 ~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~-q~~~L~~EN~eLKqrL 183 (351)
..|++.|.+.|..+...+.-+..+.-++..+.. ....+...-+.+|..|
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL 94 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDL 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 666777888888887777666666666555421 1233333444444444
No 244
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.67 E-value=1.1e+02 Score=22.02 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~ 163 (351)
||+.-+.|+.-++.|+.+++
T Consensus 22 lerdeqnlekiianlrdeia 41 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHH
Confidence 44444444444444443333
No 245
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.61 E-value=2e+02 Score=29.13 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 038341 195 AEIADNKAEVGRLRQL 210 (351)
Q Consensus 195 a~~E~Lk~EVqRLR~a 210 (351)
...+.|+..|++|+..
T Consensus 175 ~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567888888888887
No 246
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.40 E-value=1.4e+02 Score=23.10 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 038341 151 LENQIAMLTPQ 161 (351)
Q Consensus 151 Lq~ENs~Ls~q 161 (351)
|+.+...++..
T Consensus 40 lE~el~~~r~e 50 (86)
T 1x8y_A 40 KEREMAEMRAR 50 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 247
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=37.36 E-value=89 Score=22.79 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
++..++..|+.+...++..++...+++..|.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444444444
No 248
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.31 E-value=44 Score=31.65 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 147 KAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 147 kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
+++.|+.++..|.++++.|++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 249
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=37.17 E-value=72 Score=21.25 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQ 209 (351)
Q Consensus 199 ~Lk~EVqRLR~ 209 (351)
+|+=||..|++
T Consensus 20 alkfeiaalkq 30 (33)
T 4dzn_A 20 ALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 34444444443
No 250
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.05 E-value=1e+02 Score=28.54 Aligned_cols=40 Identities=5% Similarity=0.066 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
.|......+++++..|.+....+..|++.+..+|+..+++
T Consensus 168 yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~ 207 (228)
T 3q0x_A 168 FLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQ 207 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555666666666666555443
No 251
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=35.93 E-value=37 Score=22.63 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 038341 165 YQNMQEFLQKEQRSLSERMTTYNNN 189 (351)
Q Consensus 165 Lq~q~~~L~~EN~eLKqrLqsLeQq 189 (351)
|+.+......||-.|.+.++.|+.+
T Consensus 6 lekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3334444555666666666555543
No 252
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.91 E-value=55 Score=22.31 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038341 149 KALENQIAMLTPQVSLYQN 167 (351)
Q Consensus 149 q~Lq~ENs~Ls~qv~~Lq~ 167 (351)
...+.++.+|++|...|+.
T Consensus 10 ~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHH
Confidence 3333344444443333333
No 253
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=35.38 E-value=2.5e+02 Score=25.31 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRS 178 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~e 178 (351)
+|+.++..|+.+|..|...+..|..+...+..+..+
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~ 171 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEA 171 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333
No 254
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=35.01 E-value=77 Score=29.17 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
+|+++....-.+-..|+.....|.+|+..|+.+|..|+
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 34444444444445555556668888888888888877
No 255
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=34.87 E-value=21 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 136 KKLQYVTDLEKKAKALENQIAML 158 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~L 158 (351)
.+..|++.||.+|..|+.....|
T Consensus 55 ~~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 55 LKDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 35679999999999888766554
No 256
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.93 E-value=1.3e+02 Score=24.05 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQ 161 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~q 161 (351)
|+.+++.|+.+...|..+
T Consensus 6 L~~~i~~L~~q~~~L~~e 23 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESS 23 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 257
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=33.67 E-value=92 Score=24.35 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIA 198 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E 198 (351)
++-|+.+..-..+|+.++..+++.|..- .+.+-.||+.++|+..+-++..-
T Consensus 9 Leml~IrKnma~sEI~EID~Ki~nL~~m-------R~ivldRlA~lEqdE~~LE~~l~ 59 (72)
T 2xu6_A 9 LEFLNIQKNSTMSEIRDIEVEVENLRQK-------KEKLLGKIANIEQNQLMLEDNLK 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHH
Confidence 4556666666666777777666665442 23344577777776655444433
No 258
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=33.28 E-value=3.1e+02 Score=25.73 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=43.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhh
Q 038341 123 IESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQ-----NMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 123 iLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq-----~q~~~L~~EN~eLKqrLqsL 186 (351)
-+.+++...-+..+..+|-++.+.+-.++...+..|..=+...+ .-......|+.+|+.+++..
T Consensus 78 el~~~q~~el~~l~~~q~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kk 146 (251)
T 1jad_A 78 ELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAK 146 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888877777665443332 22334467888888877643
No 259
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.20 E-value=14 Score=27.10 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
.||.-|..|+..|+.|...++-|+..
T Consensus 21 klenivarlendnanlekdianlekd 46 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34555555555555555444444433
No 260
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=33.05 E-value=2.7e+02 Score=25.06 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 136 KKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 136 RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.-++.+..|..++..|+.+...|.+++..+-.....+ |..-|+.-+..|.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~--E~~L~~KF~~lLN 185 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL--ETDLYKRFILVLN 185 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4445556666667777777777777777666654433 3444444444443
No 261
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.03 E-value=49 Score=24.90 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 170 EFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 170 ~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..|..-|-.|-.+++.|+.++.- -..||.||+.+
T Consensus 14 ~kLKq~n~~L~~kv~~Le~~c~e-------~eQEieRL~~L 47 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHLEFSCSE-------KEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 33444444444445545444322 33566677666
No 262
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.88 E-value=1.1e+02 Score=24.54 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 173 QKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQLKM 219 (351)
Q Consensus 173 ~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~~ 219 (351)
-.||..|..+|+.+. ..+..|++|..+|+.+ ..+.|.+
T Consensus 37 L~EN~~Lh~~ie~~~-------eEi~~Lk~en~~L~el--A~~~q~l 74 (83)
T 1wlq_A 37 LKENEKLHKEIEQKD-------SEIARLRKENKDLAEV--AEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHTHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--HHHHHHH
Confidence 345666666665543 3356677777777766 4444443
No 263
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.56 E-value=20 Score=35.53 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=10.4
Q ss_pred CCCCcccccCCCCC
Q 038341 308 PNPSWILQSGPPEN 321 (351)
Q Consensus 308 ~~~~~~~~~~~~~~ 321 (351)
+.|.-+|+.|||+.
T Consensus 213 ~~prGvLLyGPPGT 226 (434)
T 4b4t_M 213 RAPKGALMYGPPGT 226 (434)
T ss_dssp CCCCEEEEESCTTS
T ss_pred CCCCeeEEECcCCC
Confidence 44677888888874
No 264
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.45 E-value=34 Score=33.59 Aligned_cols=8 Identities=0% Similarity=-0.093 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 038341 126 NRVSAQKS 133 (351)
Q Consensus 126 NReSAqRS 133 (351)
|.+..+++
T Consensus 10 ~~~~~~~~ 17 (425)
T 2dq3_A 10 KPDYVKER 17 (425)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 44444333
No 265
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=32.44 E-value=2e+02 Score=29.22 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=19.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 188 NNIVFINAEIADNKAEVGRLRQLHLYQQQL 217 (351)
Q Consensus 188 Qq~~lkda~~E~Lk~EVqRLR~a~i~qQqq 217 (351)
..........+.+...|+.|+.+ |.+|..
T Consensus 163 ~~i~~l~~~~~~~~~~i~~l~~~-~~~~~~ 191 (461)
T 3ghg_B 163 TNLRVLRSILENLRSKIQKLESD-VSAQME 191 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Confidence 33344455677899999999998 444433
No 266
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.17 E-value=1.9e+02 Score=23.07 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=5.2
Q ss_pred hHHHHHHH
Q 038341 127 RVSAQKSR 134 (351)
Q Consensus 127 ReSAqRSR 134 (351)
|++|+..+
T Consensus 25 rEaA~Ee~ 32 (84)
T 1gmj_A 25 REQAEEER 32 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHhHHH
Confidence 67776654
No 267
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.08 E-value=2.3e+02 Score=25.52 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 038341 198 ADNKAEVGRLR 208 (351)
Q Consensus 198 E~Lk~EVqRLR 208 (351)
+.++.++..++
T Consensus 131 ~~~~a~l~~a~ 141 (341)
T 3fpp_A 131 GTIDAQIKRNQ 141 (341)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 268
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=31.96 E-value=1.1e+02 Score=20.42 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv 162 (351)
|..+|+.|...|-....++
T Consensus 6 lkkrvqalkarnyaakqkv 24 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3344444444443333333
No 269
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.96 E-value=2.2e+02 Score=24.91 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQ 209 (351)
Q Consensus 198 E~Lk~EVqRLR~ 209 (351)
+.|+.|.+.|..
T Consensus 97 ~~LeAE~aKLeE 108 (146)
T 2xnx_M 97 EQLTIEKAKLEE 108 (146)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH
Confidence 345555555443
No 270
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=31.94 E-value=1.5e+02 Score=24.87 Aligned_cols=63 Identities=6% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+...-..|+.....|..+|..|.+........-... .|.. .+..-|....+.++.+|.++|..
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF--~l~~--~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF--KLPA--GDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH--CCCH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc--CCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555544443332221111 1211 12334566778888888888764
No 271
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=31.18 E-value=1.7e+02 Score=21.99 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQK-------EQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~-------EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
.+.|+.+...-...+..+......|.. +...++.+|..|.... +.+.+...+-..+|..+
T Consensus 45 h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw---~~L~~~~~~R~~~L~~a 111 (118)
T 3uul_A 45 HETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARW---EALRVESMERQSRLHDA 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333322 2334555555554322 22233444444555555
No 272
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=30.99 E-value=1.9e+02 Score=22.49 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFLQKE 175 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~E 175 (351)
|...|..|..|..+|..++..++++...+..|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888887777776665533
No 273
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.96 E-value=1.9e+02 Score=26.39 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 038341 144 LEKKAKALENQI 155 (351)
Q Consensus 144 LE~kVq~Lq~EN 155 (351)
|+.++..|+.++
T Consensus 64 l~~~l~~l~~e~ 75 (213)
T 4ani_A 64 AKAQIAELEAKL 75 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 274
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=30.39 E-value=2.4e+02 Score=23.66 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLT 159 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls 159 (351)
++.++..+..++..+.
T Consensus 47 ~~~~i~~l~~~i~~~~ 62 (196)
T 1fio_A 47 LRHSLDNFVAQATDLQ 62 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 275
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.26 E-value=2.1e+02 Score=22.82 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038341 176 QRSLSE 181 (351)
Q Consensus 176 N~eLKq 181 (351)
...|+.
T Consensus 56 l~~Lq~ 61 (81)
T 3qh9_A 56 VAQLQE 61 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 276
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=30.10 E-value=81 Score=28.35 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=5.7
Q ss_pred CCCCHHHHHH
Q 038341 113 HSMDPKRLRR 122 (351)
Q Consensus 113 ~~~DpKR~KR 122 (351)
...||...-|
T Consensus 135 ~v~~p~e~i~ 144 (184)
T 3w03_C 135 KVENPAEVIR 144 (184)
T ss_dssp ECSCHHHHHH
T ss_pred ECCChHHHHH
Confidence 3456766554
No 277
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=30.06 E-value=2.3e+02 Score=23.24 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHhhhhcchhhhhHHHHHHHH
Q 038341 130 AQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQE----FLQ---KEQRSLSERMTTYNNNIVFINAEIADNKA 202 (351)
Q Consensus 130 AqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~----~L~---~EN~eLKqrLqsLeQq~~lkda~~E~Lk~ 202 (351)
-.-||.-=.....+||.-+..|+.++..=..++..++.... .|. .-.-+|..||.-.+++..|-+.-......
T Consensus 16 EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~D 95 (101)
T 1d7m_A 16 EKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAID 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 33456555555677777777777777765555555544322 122 22345666777777666555544444445
Q ss_pred HHHHH
Q 038341 203 EVGRL 207 (351)
Q Consensus 203 EVqRL 207 (351)
|-.||
T Consensus 96 ek~rL 100 (101)
T 1d7m_A 96 EKSKL 100 (101)
T ss_dssp HHHHH
T ss_pred hhhhc
Confidence 54554
No 278
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=30.05 E-value=1.9e+02 Score=23.59 Aligned_cols=68 Identities=9% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
=+..|-.+...++.|......++..+..+.. .+.-.||++.+.|..-..+-..+..+|.+-+..|+..
T Consensus 12 ~vkRL~KE~~~Y~kE~~~q~~riek~k~~~~---~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~ 79 (106)
T 1qsd_A 12 ALKRLTKEEGYYQQELKDQEAHVAKLKEDKS---VDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQF 79 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666655544321 1345778888888877777777888888888888887
No 279
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=30.02 E-value=2e+02 Score=23.35 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
..|-.....++.|...-..++..+..+ ..+.-.||++.+.|..-..+-..+..+|.+.+..|+..
T Consensus 17 kRL~KE~~~Y~kE~~~q~~riek~k~e----~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~ 81 (108)
T 1h7c_A 17 RRLVKERVMYEKEAKQQEEKIEKMRAE----DGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRI 81 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444322 11234778888888877777777888888888888876
No 280
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=29.77 E-value=1.1e+02 Score=26.94 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 122 RIESNRVSAQKSRMKKLQYVTDLEKKAKAL 151 (351)
Q Consensus 122 RiLkNReSAqRSR~RKKqYIeELE~kVq~L 151 (351)
++..-|...+.+=++|++|+.+|+.+...|
T Consensus 9 ~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 9 NLEVERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555567777777777766655
No 281
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.71 E-value=62 Score=20.87 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 038341 172 LQKEQRSLSERM 183 (351)
Q Consensus 172 L~~EN~eLKqrL 183 (351)
|..||..|.++|
T Consensus 5 lefendaleqki 16 (28)
T 3ra3_A 5 LEFENDALEQKI 16 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhccHHHHHHH
Confidence 333444444444
No 282
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=29.65 E-value=1.7e+02 Score=30.67 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=18.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 038341 128 VSAQKSRMK---KLQYVTDLEKKAKALENQIAML 158 (351)
Q Consensus 128 eSAqRSR~R---KKqYIeELE~kVq~Lq~ENs~L 158 (351)
+++.+.|.+ +-.-+++|++++..++.|...|
T Consensus 387 ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~ 420 (854)
T 1qvr_A 387 EAAARLRMALESAPEEIDALERKKLQLEIEREAL 420 (854)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 444444443 3455777777777776665443
No 283
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=29.64 E-value=1.6e+02 Score=21.31 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSL 164 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~ 164 (351)
.||.++..++...+.+...+..
T Consensus 9 ~le~k~~~~e~iv~~l~~~v~~ 30 (66)
T 3m0a_A 9 SLEKKTATFENIVCVLNREVER 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 3455555555444444444333
No 284
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.31 E-value=1.1e+02 Score=20.87 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 038341 198 ADNKAEVGRLRQL 210 (351)
Q Consensus 198 E~Lk~EVqRLR~a 210 (351)
+.|..||.|||.+
T Consensus 18 ~~Le~eV~rLk~l 30 (34)
T 2oxj_A 18 XHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4455566666654
No 285
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.17 E-value=2.4e+02 Score=23.26 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=3.4
Q ss_pred CHHHHHHH
Q 038341 116 DPKRLRRI 123 (351)
Q Consensus 116 DpKR~KRi 123 (351)
|..+++.+
T Consensus 45 dl~~l~~I 52 (142)
T 3gp4_A 45 DLRWILFT 52 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 286
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=28.90 E-value=44 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTP 160 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~ 160 (351)
..|+++||.++..|+.....|..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 35889999999988877766543
No 287
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=28.84 E-value=1.7e+02 Score=21.22 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 160 PQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 160 ~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
.++..++.-...+..+-..+...++++.++..+-...++.|+..+.+|.
T Consensus 12 ~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 12 KKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 3333333333333334444444444444443333334445555444443
No 288
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.83 E-value=4.7e+02 Score=26.44 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALE 152 (351)
Q Consensus 141 IeELE~kVq~Lq 152 (351)
|++||.+|..|.
T Consensus 102 LqeLe~~l~~ls 113 (464)
T 1m1j_B 102 LRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 445555555443
No 289
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=28.79 E-value=1.9e+02 Score=25.28 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 195 AEIADNKAEVGRLRQ 209 (351)
Q Consensus 195 a~~E~Lk~EVqRLR~ 209 (351)
...|.+..||.|+..
T Consensus 165 ~~~~~~e~~~~~~~~ 179 (202)
T 2p4w_A 165 RLAEENRQIIEEIFR 179 (202)
T ss_dssp HHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666544
No 290
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.29 E-value=78 Score=20.27 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQ 161 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~q 161 (351)
+|..+|-.|.-|...|..+
T Consensus 4 qlkdevgelkgevralkde 22 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDE 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHH
Confidence 3444444444444333333
No 291
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.03 E-value=41 Score=23.82 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLY 165 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~L 165 (351)
++||+++..|+.....|.+.+..|
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
No 292
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=28.00 E-value=2.7e+02 Score=23.44 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=23.3
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQ 161 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~q 161 (351)
+.-|+|+..- ..-..--.+|++-..|+|++++.+..+-..+..+
T Consensus 40 ELeRLr~~~d--~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe 83 (115)
T 3vem_A 40 ELEKLRRESE--NSKKTFEEKKSILKAELERKMAEVQAEFRRKFHE 83 (115)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466664422 1122233456677777777776665555444433
No 293
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=27.97 E-value=2e+02 Score=26.09 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAK 149 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq 149 (351)
...++-+....|+.|-++..++++.++.|-.++.
T Consensus 101 ~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~ 134 (235)
T 2odv_A 101 EWGKLHVAILEREKQLRSEFERLEALQRIVTKLQ 134 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778999999999888877766655544
No 294
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=27.81 E-value=2.2e+02 Score=22.27 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 151 LENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 151 Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
|..-...|+.++.....-+..|..++..+...+.+|+
T Consensus 22 LnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 22 LKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3333444555555555555555555555555555554
No 295
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=27.40 E-value=2.2e+02 Score=22.10 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
+|...|..|..|..+|..++..++++...+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888888888877777666555
No 296
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=27.02 E-value=56 Score=25.53 Aligned_cols=14 Identities=36% Similarity=0.339 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLRQL 210 (351)
Q Consensus 197 ~E~Lk~EVqRLR~a 210 (351)
+..||.||.||...
T Consensus 52 ~~lLK~EIRRlERn 65 (71)
T 3bbp_D 52 IKLLKSEIRRLERN 65 (71)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 46788888887653
No 297
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.00 E-value=1.5e+02 Score=29.98 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 038341 149 KALENQIAMLTPQV 162 (351)
Q Consensus 149 q~Lq~ENs~Ls~qv 162 (351)
+.|+.+-..+++++
T Consensus 54 ~~l~~~rN~~sk~i 67 (484)
T 3lss_A 54 EASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 298
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.93 E-value=2.1e+02 Score=21.84 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 038341 172 LQKEQRSLSERMTTYN 187 (351)
Q Consensus 172 L~~EN~eLKqrLqsLe 187 (351)
|......|..+|..|+
T Consensus 70 L~~~~e~i~~~i~~le 85 (107)
T 1fxk_A 70 LQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344444433
No 299
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.85 E-value=33 Score=33.09 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 140 YVTDLEKKAKALENQIAMLTPQVSLYQNMQEFL 172 (351)
Q Consensus 140 YIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L 172 (351)
-|..||.+|..+++++..|+..+..++.+...|
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L 37 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNL 37 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655555555554444443333
No 300
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.83 E-value=1.3e+02 Score=27.13 Aligned_cols=22 Identities=5% Similarity=-0.085 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLT 159 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls 159 (351)
.++|.-|=.++..|+.+|..|.
T Consensus 144 ~elid~~ld~~~~L~~~n~~Lq 165 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQ 165 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444443333
No 301
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.57 E-value=2.6e+02 Score=22.77 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHH
Q 038341 155 IAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLR 208 (351)
Q Consensus 155 Ns~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR 208 (351)
...+...+..|++.......-...|..++++|..+..+..... .+||..|+
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h---eeEl~eLq 114 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH---EEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3445556666666667777777778888888876655544333 34665554
No 302
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.32 E-value=5.5e+02 Score=26.39 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
-+|.++||+++..|+..+..--..|..|+.-...+..+.+.|..-|
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665444433555555555555555544444433
No 303
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=26.20 E-value=2e+02 Score=24.50 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 196 EIADNKAEVGRLRQL 210 (351)
Q Consensus 196 ~~E~Lk~EVqRLR~a 210 (351)
+.+.|++||.+||..
T Consensus 44 E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 44 EKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356899999999987
No 304
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.20 E-value=2.6e+02 Score=23.19 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 150 ALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 150 ~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
..+.++..|..++..|......|..|..-+
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 305
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=26.00 E-value=1e+02 Score=28.25 Aligned_cols=10 Identities=20% Similarity=0.085 Sum_probs=5.4
Q ss_pred cHHHHHHHhc
Q 038341 264 SIEEILRLHQ 273 (351)
Q Consensus 264 ~~~~~~~~~~ 273 (351)
+..|...|-.
T Consensus 178 ~~~e~~~lFg 187 (252)
T 3e98_A 178 RPHELAFLFG 187 (252)
T ss_dssp CHHHHHHHCC
T ss_pred CchHHHHhcC
Confidence 3455666654
No 306
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.77 E-value=1.2e+02 Score=22.18 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 153 NQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 153 ~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.||+.|..-++.|+..+..|......|...|+.|+
T Consensus 17 kenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 35666666666655555555555555544444443
No 307
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.32 E-value=61 Score=32.07 Aligned_cols=28 Identities=4% Similarity=0.195 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 158 LTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 158 Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
|+.++..+..+...+..+.++++.++..
T Consensus 44 l~~e~~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 44 FRSELQRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333344344444444433
No 308
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.14 E-value=2.4e+02 Score=21.84 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 038341 197 IADNKAEVGRLRQL 210 (351)
Q Consensus 197 ~E~Lk~EVqRLR~a 210 (351)
.+.+.+++..|+..
T Consensus 93 ~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 93 EKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666655554
No 309
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=25.10 E-value=2.1e+02 Score=27.29 Aligned_cols=9 Identities=0% Similarity=0.106 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 038341 136 KKLQYVTDL 144 (351)
Q Consensus 136 RKKqYIeEL 144 (351)
|-..|++.|
T Consensus 220 ~~~~yf~~l 228 (426)
T 1lrz_A 220 RDDKFYYNR 228 (426)
T ss_dssp -CHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344555554
No 310
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.02 E-value=2.3e+02 Score=21.69 Aligned_cols=24 Identities=4% Similarity=0.036 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNM 168 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q 168 (351)
+...+.++..+..|..++..++.+
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e 27 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRAR 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 311
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.02 E-value=1e+02 Score=26.36 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 038341 142 TDLEKKAKALEN 153 (351)
Q Consensus 142 eELE~kVq~Lq~ 153 (351)
..||.++..++.
T Consensus 3 ~~l~~~~~~~~~ 14 (192)
T 2gkw_A 3 GLLESQLSRHDQ 14 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 312
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=24.93 E-value=1.8e+02 Score=25.44 Aligned_cols=47 Identities=2% Similarity=0.094 Sum_probs=24.2
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEF 171 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~ 171 (351)
-.+.+|+++.++ . ....+-|+.+.+.|+.+..+|...+..|+.....
T Consensus 65 ~l~~i~~~~~~~-~--------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (278)
T 1r8e_A 65 PLEEMKKAQDLE-M--------EELFAFYTEQERQIREKLDFLSALEQTISLVKKR 111 (278)
T ss_dssp CHHHHHHHTTSC-H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC-h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555 1 1223445555555555555555555555544333
No 313
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.83 E-value=1.9e+02 Score=20.75 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVS 163 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~ 163 (351)
+.-|+.|+.|+.++..|..++.
T Consensus 8 efAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665544
No 314
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.75 E-value=2e+02 Score=28.66 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 038341 195 AEIADNKAEVGRLRQL 210 (351)
Q Consensus 195 a~~E~Lk~EVqRLR~a 210 (351)
..+..|+..|..|+..
T Consensus 119 ~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 119 QKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446677777766654
No 315
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.44 E-value=1.7e+02 Score=26.99 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038341 172 LQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQQQLKM 219 (351)
Q Consensus 172 L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~qQqq~~ 219 (351)
.-.||..|..+|..++. ++..|++|...||.+ ..+.|.+
T Consensus 113 aLeEN~~Lh~~ie~l~e-------Ei~~LkeEn~eLkeL--ae~~q~l 151 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDN-------EIARLKKENKELAEV--AEHVQYM 151 (209)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHHHH
Confidence 34567777777766543 245666666666665 4444443
No 316
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=24.37 E-value=4e+02 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 134 RMKKLQYVTDLEKKAKALENQIAMLTPQVSL 164 (351)
Q Consensus 134 R~RKKqYIeELE~kVq~Lq~ENs~Ls~qv~~ 164 (351)
+.||.+-++-|.+++..|+.+-..|...+..
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887777766644
No 317
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.05 E-value=2.2e+02 Score=21.02 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSL 179 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eL 179 (351)
++|...+..-..+....+.++..|++....|..|...|
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444555555444444444433
No 318
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.78 E-value=2.7e+02 Score=22.20 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLT 159 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls 159 (351)
..|+.++..|+.+...+.
T Consensus 11 ~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 11 HLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 319
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.50 E-value=3.4e+02 Score=23.07 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 152 ENQIAMLTPQVSLYQNMQEFLQKEQRSLSERM 183 (351)
Q Consensus 152 q~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrL 183 (351)
-.+...+.++...|..++..+..|.++++.+|
T Consensus 49 l~~LsaIk~ry~~L~~q~~~iaaeQke~~d~i 80 (123)
T 4aj5_K 49 LKELSVIKSRYQTLYARFKPVAVEQKESKSRI 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555566666666666655
No 320
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.49 E-value=2.7e+02 Score=22.70 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAM 157 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~ 157 (351)
.+||.+++.|+.++..
T Consensus 50 ~eL~~EI~~L~~eI~~ 65 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQ 65 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555544444443
No 321
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=23.19 E-value=1.5e+02 Score=20.14 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 038341 163 SLYQNMQEFLQKEQRSLSERMTTY 186 (351)
Q Consensus 163 ~~Lq~q~~~L~~EN~eLKqrLqsL 186 (351)
..|..+...|...+..|+++|+.+
T Consensus 10 ~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 10 QKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566666777777777654
No 322
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.88 E-value=61 Score=24.44 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIA 156 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs 156 (351)
+.|+..||.+|..|+....
T Consensus 47 ~~~~~~Le~rl~~le~~l~ 65 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLK 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3488889988887765443
No 323
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=22.81 E-value=2.7e+02 Score=21.64 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038341 148 AKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN 187 (351)
Q Consensus 148 Vq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe 187 (351)
.+.|=.||.+|+.- |..-|+.||.|.+.|.
T Consensus 10 ~q~ll~EN~~LreA----------lkqsNq~mkeR~eeL~ 39 (70)
T 3brv_B 10 LQRCLEENQELRDA----------IRQSNQILRERCEELL 39 (70)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 34455677777643 4445778888887775
No 324
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.53 E-value=1.9e+02 Score=19.88 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 038341 202 AEVGRLR 208 (351)
Q Consensus 202 ~EVqRLR 208 (351)
.||.|||
T Consensus 22 ~eV~RLk 28 (36)
T 1kd8_B 22 NKVARLK 28 (36)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 325
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.10 E-value=1.9e+02 Score=26.68 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=6.8
Q ss_pred hhccCCCccCC
Q 038341 294 MLMMPGWGTAA 304 (351)
Q Consensus 294 ~~~~~~~~~~~ 304 (351)
.+++-||+...
T Consensus 286 ~~~~~gWvp~~ 296 (357)
T 3rrk_A 286 GAALMGWVPQK 296 (357)
T ss_dssp SEEEEEEECTT
T ss_pred EEEEEEEeeHH
Confidence 45566887654
No 326
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=22.09 E-value=2.1e+02 Score=22.79 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQ 169 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~ 169 (351)
.+.+.+.|.+.+.|+..|..|..++..|+.+.
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35567888889999999999998888776554
No 327
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=22.05 E-value=20 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=13.9
Q ss_pred hhhcchhhhhHHHHHHHHHHHHHHH
Q 038341 185 TYNNNIVFINAEIADNKAEVGRLRQ 209 (351)
Q Consensus 185 sLeQq~~lkda~~E~Lk~EVqRLR~ 209 (351)
+.+.+......+.|+.+.|++.+|+
T Consensus 13 avenelhynkslleevkdelqkmrq 37 (38)
T 1c94_A 13 AVENELHYNKSLLEEVKDELQKMRQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3344444444555666777766654
No 328
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=21.99 E-value=2.1e+02 Score=27.85 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cchhhhhHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN----NNIVFINAEIADNKA 202 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe----Qq~~lkda~~E~Lk~ 202 (351)
+..|-...+.|+....+|......|+++...-..++.+|..++.+|. |-...||...+-|+.
T Consensus 200 ~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~ 265 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQ 265 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHH
No 329
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.89 E-value=2.7e+02 Score=22.38 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 142 TDLEKKAKALENQIAMLTPQVSLYQNMQEFLQ 173 (351)
Q Consensus 142 eELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~ 173 (351)
+.|+..++.|+.....++.+++.+......+.
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555566666666666666655554443
No 330
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.85 E-value=6.3e+02 Score=26.27 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTP 160 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~ 160 (351)
++..|++.+.+++|.....+
T Consensus 316 ~~~Aer~~e~a~ael~~a~k 335 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANE 335 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555544433
No 331
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.80 E-value=2.2e+02 Score=21.82 Aligned_cols=15 Identities=47% Similarity=0.694 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQI 155 (351)
Q Consensus 141 IeELE~kVq~Lq~EN 155 (351)
|+.||.++..|+.+.
T Consensus 31 Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 31 LEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 332
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=21.79 E-value=42 Score=26.65 Aligned_cols=46 Identities=7% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHH-------HHHHHHHHHHHH
Q 038341 165 YQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIA-------DNKAEVGRLRQL 210 (351)
Q Consensus 165 Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E-------~Lk~EVqRLR~a 210 (351)
|...+..|...+.+||.++.+|..+.--.++... .|.-+++++|++
T Consensus 3 l~~~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqa 55 (79)
T 1tu3_F 3 LGSAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQA 55 (79)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 333
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.74 E-value=3.5e+02 Score=22.45 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038341 159 TPQVSLYQNMQEFLQKEQRSLSERMTTYNN 188 (351)
Q Consensus 159 s~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQ 188 (351)
...++.|+.+...|..++..|+.+|..|+|
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666677777777777777766663
No 334
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.23 E-value=74 Score=24.43 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 182 RMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 182 rLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+|..|+....-++.++..|+.++.+++.+
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666667788888899998888887
No 335
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.11 E-value=6e+02 Score=26.43 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhhhhHHHHHHHHHHHH
Q 038341 137 KLQYVTD------LEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYN-NNIVFINAEIADNKAEVGR 206 (351)
Q Consensus 137 KKqYIeE------LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLe-Qq~~lkda~~E~Lk~EVqR 206 (351)
||.|-.+ |..++...+.|++.+..-+..++.+...+..|.+...+.+.++. ...-++.++.+.-+++.++
T Consensus 341 Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~ 417 (602)
T 1cii_A 341 KKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEE 417 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
No 336
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=21.01 E-value=3.9e+02 Score=22.79 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQLHLYQ 214 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a~i~q 214 (351)
+..||.+|+.+-..+-.+..+++.+..-.-.|...-+.+ +-....-...|.+++..+|.+ ++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~----------aN~T~~aL~~L~~q~Tslr~~-~LQ 78 (125)
T 4g2k_A 16 MKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRL----------ANQTAKSLELLLRVTTEERTF-SLI 78 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH-HHH
No 337
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.85 E-value=1.1e+02 Score=30.25 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=7.9
Q ss_pred CCCcccccCCCCC
Q 038341 309 NPSWILQSGPPEN 321 (351)
Q Consensus 309 ~~~~~~~~~~~~~ 321 (351)
.|.-+|+.|||+.
T Consensus 181 ~prGvLL~GPPGT 193 (405)
T 4b4t_J 181 QPKGVILYGPPGT 193 (405)
T ss_dssp CCCCEEEESCSSS
T ss_pred CCCceEEeCCCCC
Confidence 3566666666653
No 338
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.81 E-value=2.3e+02 Score=22.24 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 038341 202 AEVGRLRQL 210 (351)
Q Consensus 202 ~EVqRLR~a 210 (351)
.+|+-|..+
T Consensus 36 ~~vqaL~~a 44 (74)
T 1avy_A 36 GDVQALQEA 44 (74)
T ss_dssp HHHHHHHHT
T ss_pred hhhHHHHhc
Confidence 334444433
No 339
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.41 E-value=38 Score=28.34 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038341 144 LEKKAKALENQIAMLTPQVSLYQNMQEFL 172 (351)
Q Consensus 144 LE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L 172 (351)
++.+++.|......|..++..+..+...|
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445545555555555555555555
No 340
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=20.31 E-value=2.5e+02 Score=22.24 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHH
Q 038341 138 LQYVTDLEKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTTYNNNIVFINAEIADNKAEVGRLRQL 210 (351)
Q Consensus 138 KqYIeELE~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqsLeQq~~lkda~~E~Lk~EVqRLR~a 210 (351)
+.+..+|+.-++.|+.....|..-|...++. -..+..-|......++++|..||.-
T Consensus 35 ~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-----------------~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 35 DDQEEEIQDILKDVEETIVDLDRSIIVMKRD-----------------ENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------------TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666778887877777777777666554432 2233344555567777777777754
No 341
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.13 E-value=3.5e+02 Score=27.85 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038341 145 EKKAKALENQIAMLTPQVSLYQNMQEFLQKEQRSLSERMTT 185 (351)
Q Consensus 145 E~kVq~Lq~ENs~Ls~qv~~Lq~q~~~L~~EN~eLKqrLqs 185 (351)
+..+..|+.+..++.+++..++.....|...-.+++.+|..
T Consensus 351 ~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~ 391 (695)
T 2j69_A 351 ARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIIN 391 (695)
T ss_dssp HHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555444444444444433
No 342
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.12 E-value=3.8e+02 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.067 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038341 143 DLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 143 ELE~kVq~Lq~ENs~Ls~qv 162 (351)
.-|+.|+.|+.++..|..++
T Consensus 132 ~AertV~kLqkeiD~LEDeL 151 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKV 151 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 343
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.10 E-value=4.4e+02 Score=23.07 Aligned_cols=12 Identities=8% Similarity=-0.019 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 038341 199 DNKAEVGRLRQL 210 (351)
Q Consensus 199 ~Lk~EVqRLR~a 210 (351)
.|+.++...|..
T Consensus 124 ~Lr~qL~~~R~k 135 (175)
T 3lay_A 124 SLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 344
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.01 E-value=2.1e+02 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038341 141 VTDLEKKAKALENQIAMLTPQV 162 (351)
Q Consensus 141 IeELE~kVq~Lq~ENs~Ls~qv 162 (351)
+++|+.++..|+...-++.+..
T Consensus 68 l~~l~~e~~el~d~~lR~~AEf 89 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYADF 89 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333
No 345
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.00 E-value=4.7e+02 Score=23.32 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=18.9
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038341 116 DPKRLRRIESNRVSAQKSRMKKLQYVTD 143 (351)
Q Consensus 116 DpKR~KRiLkNReSAqRSR~RKKqYIeE 143 (351)
+-.+++++..-|.-+.+-++-|..|+-+
T Consensus 35 ek~~l~~~e~~r~k~~~h~~~k~~qlre 62 (169)
T 3k29_A 35 EQEKLRERESERDKVKNHYMQKIRQLRE 62 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777665544
Done!