BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038342
(553 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00566|MPP10_HUMAN U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens
GN=MPHOSPH10 PE=1 SV=2
Length = 681
Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 117/274 (42%), Positives = 162/274 (59%), Gaps = 29/274 (10%)
Query: 247 DSDDNEEEDEHRQKLENAGYEDFFGKLEEDSGLDDEEDEDEAV-ETKKNDN--LSTHEKQ 303
D +NE+ +H++ L+ + + DD E ED V KKN + S+ EK+
Sbjct: 314 DLQENEDNKQHKESLKRVTF----------ALPDDAETEDTGVLNVKKNSDEVKSSFEKR 363
Query: 304 SEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTA 363
E++ +I +EK L+ K W +QGEVTA +RP+NS LE L F H VR APVITEE T
Sbjct: 364 QEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEETTL 423
Query: 364 SLEEMIKKRIIEGQFDDVEKAASLPSKAPRELKE---LDENKSKKGLAEVYEEEYV---- 416
LE++IK+RI + +DDV + P + E K+ LD KSK LAE+YE+EY+
Sbjct: 424 QLEDIIKQRIRDQAWDDVVRKEK-PKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYIKLNQ 482
Query: 417 QKTNPAAAPLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAME 476
QKT P + E + L LKLDALS+FHF PKP + ++ + +N+PA+ ME
Sbjct: 483 QKTAEEENP------EHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITME 536
Query: 477 EIAPVAVSDAAMLAPEEVFAGR--GDVKEEAELT 508
E+APV+VSDAA+LAPEE+ GD+K AE T
Sbjct: 537 EVAPVSVSDAALLAPEEIKEKNKAGDIKTAAEKT 570
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 22 PPVWLAPRAELSETARKASKIIFSYLRPY----APKSPLDQLLIEGFDAEQIWQQIDLQS 77
P +L + L+ +K+++ + + SPL +L+IE FD EQIWQQ++LQ+
Sbjct: 25 PECFLTIQEGLASKFTSLTKVLYDFNKILENGRIHGSPLQKLVIENFDDEQIWQQLELQN 84
Query: 78 QPLLSSLKREV 88
+P+L + V
Sbjct: 85 EPILQYFQNAV 95
>sp|Q810V0|MPP10_MOUSE U3 small nucleolar ribonucleoprotein protein MPP10 OS=Mus musculus
GN=Mphosph10 PE=1 SV=2
Length = 681
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 159/266 (59%), Gaps = 30/266 (11%)
Query: 255 DEHRQKLENAGYEDFFGKLEEDSGLDDEEDEDE---AVETKKNDNLSTHEKQSEQLRAEI 311
D+H+ L+ + L D+E ED AV+ + ++ S+ EK+ E++ +I
Sbjct: 324 DQHKGSLKRVTF-----------ALPDDEAEDTSPLAVKQESDEVKSSFEKRQEKMNEKI 372
Query: 312 EKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKK 371
+EK LD K W +QGEVTA +RP+NS LE L F H VR APVITEE T LE++IK+
Sbjct: 373 ASLEKELLDKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEETTLHLEDIIKQ 432
Query: 372 RIIEGQFDDVEKAASLPSKAPRELKE---LDENKSKKGLAEVYEEEYV----QKTNPAAA 424
RI + +DDVE+ P + E K+ LD KSK LAE+YE+EY+ QKT
Sbjct: 433 RIRDQAWDDVERKEK-PKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYLKLNQQKTEEEDN 491
Query: 425 PLTFSDEQKKEASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVS 484
P + E + L LKLDALS+FHF PKP + ++ + +N+PA+ MEE+APV+VS
Sbjct: 492 P------EHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITMEEVAPVSVS 545
Query: 485 DAAMLAPEEVFAGR--GDVKEEAELT 508
DAA+LAPEE+ GD+K AE T
Sbjct: 546 DAALLAPEEIKEKNKAGDLKTAAEKT 571
>sp|P47083|MPP10_YEAST U3 small nucleolar RNA-associated protein MPP10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MPP10 PE=1
SV=1
Length = 593
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 148/504 (29%), Positives = 242/504 (48%), Gaps = 114/504 (22%)
Query: 53 KSPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVKKFEKKPEEIGKIREVLEGEKKVV 112
K+ LD++ ++G DA Q+W Q+ L +L S+ ++ + I ++++V+ +
Sbjct: 46 KAELDEITVDGLDANQVWWQVKL----VLDSIDGDL------IQGIQELKDVVTPSHNL- 94
Query: 113 ESVGKVLEG----------------ERRVLAVESDDFDEDLDDGLDDDDDDDDDDDEEEE 156
S G L E+++L+ + + +E +D L ++D++ DDE+
Sbjct: 95 -SDGSTLNSSSGEESELEEAESVFKEKQMLSADVSEIEEQSNDSLSENDEEPSMDDEKTS 153
Query: 157 EEEEVEG-------SEGEEEKKGKGGPEGGIEDEFLKINELQEYLEEDEAREYGLKKDSN 209
E E S G++E+ P GI D+F + + R+ +DSN
Sbjct: 154 AEAAREEFAEEKRISSGQDERHSSPDP-YGINDKFFDLEKFN--------RDTLAAEDSN 204
Query: 210 DSRKKGGRRVLDNEEDEDEDEDEDEEDEDEEELGVFGDSDDNEEEDEHRQKLENAGYEDF 269
++ + EDED D +D +DEEE ++ YEDF
Sbjct: 205 EAS--------EGSEDEDIDYFQDMPSDDEEEEAIY--------------------YEDF 236
Query: 270 FGK-----------------------LEEDSGLD--------DEEDED--EAVETKKNDN 296
F K E DS +D DEEDE E V + N
Sbjct: 237 FDKPTKEPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEPNAEGVGEASDKN 296
Query: 297 LSTHEKQSEQLRAEIEKMEKANLDPKTWTMQGEVTAAQRPKNSALEVDLDFQHNVRPAPV 356
LS+ EKQ ++R +IE++E + K W+++GEV A RP+++ L +L+F +P PV
Sbjct: 297 LSSFEKQQIEIRKQIEQLENEAVAEKKWSLKGEVKAKDRPEDALLTEELEFDRTAKPVPV 356
Query: 357 ITEEFTASLEEMIKKRIIEGQFDDVEKAASL--PSKAPRELKELDENKSKKGLAEVYEEE 414
IT E T SLE+MI++RI + FDD+++ L K+ R EL + KS K LAE+YE++
Sbjct: 357 ITSEVTESLEDMIRRRIQDSNFDDLQRRTLLDITRKSQRPQFELSDVKSSKSLAEIYEDD 416
Query: 415 YVQKTNPAAAPLTFSDEQKK---EASMLFKKLCLKLDALSHFHFTPKPVIEDMSIQANVP 471
Y + + +A S+E +K E S L+ L KLD LS HF PKP + I+ P
Sbjct: 417 YTRAEDESA----LSEELQKAHSEISELYANLVYKLDVLSSVHFVPKPASTSLEIRVETP 472
Query: 472 ALAMEEIAPVAVSDAAMLAPEEVF 495
++ME+ P+ +S+A+ LAP+E++
Sbjct: 473 TISMEDAQPLYMSNASSLAPQEIY 496
>sp|O13910|MPP10_SCHPO U3 small nucleolar ribonucleoprotein protein mpp10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mpp10 PE=1 SV=1
Length = 598
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 148/246 (60%), Gaps = 11/246 (4%)
Query: 270 FGKLEEDSGLDDEEDEDEAVETKKNDNLSTHEKQSEQLRAEIEKMEKANLDPKTWTMQGE 329
F ++++D DEED+ A D LS++E+ +L +I ++E N+ K+WTM GE
Sbjct: 276 FDRVKKDLFASDEEDDVSA------DQLSSYERDKARLTQQIRELEAENVAKKSWTMMGE 329
Query: 330 VTAAQRPKNSALEVDLDFQHNVRPAPVITEEFTASLEEMIKKRIIEGQFDDVEKAASLPS 389
T+ RP NS L+VDL+F+ +P PV TEE T +LE++IK RII FDDV K A +
Sbjct: 330 ATSKGRPSNSLLDVDLEFETGAKPVPVQTEETTETLEDLIKNRIISKTFDDVPKRAPVAV 389
Query: 390 K--APRELKELDENKSKKGLAEVYEEEYVQKTNP---AAAPLTFSDEQKKEASMLFKKLC 444
P EL EL+ENKS++ LAE YEEE+++K+N + +++ +E LF ++
Sbjct: 390 TEFRPSELFELNENKSQRSLAEEYEEEFLKKSNADTYKSEADKKKEKEHEEIKALFSEVS 449
Query: 445 LKLDALSHFHFTPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFAGRGDVKEE 504
LD+L+ +H+ P P + I +N P LAME++ P A SD LAP+EV+ + +E
Sbjct: 450 RTLDSLASWHYVPPPPESTVEIVSNAPTLAMEDVQPTAASDTMALAPQEVYKPSNENREG 509
Query: 505 AELTKA 510
+T++
Sbjct: 510 ETITRS 515
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 38.9 bits (89), Expect = 0.11, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 14/144 (9%)
Query: 186 KINELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLDNEEDED--EDEDEDE---EDEDEE 240
K E ++ +E++ E ++K++ D + V N EDE E EDE E E+
Sbjct: 4123 KNTEDEKAVEKNTEDEKAIEKNTEDEKA-----VEKNTEDEKAVEKNTEDEKAIEKNTED 4177
Query: 241 ELGVFGDSDDNE--EEDEHRQKL--ENAGYEDFFGKLEEDSGLDDEEDEDEAVETKKNDN 296
E V +++D + E++ +K+ EN E K ED ++ EDE V +K ++
Sbjct: 4178 EKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAVEKNTEDEKAVEKNTEDEKVVEEKIED 4237
Query: 297 LSTHEKQSEQLRAEIEKMEKANLD 320
E+++E+ IE++EK +D
Sbjct: 4238 EKGEEQKAEEENVGIEEVEKVQID 4261
Score = 34.7 bits (78), Expect = 1.8, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 127 AVESDDFDEDLDDGLDDDDDDDDDDDEEEEEEEEVEGSEGEEEKKGKGGPEGGIEDEFLK 186
AVE + DE ++ + +D+ ++ E+E+ VE + +E+ K + E K
Sbjct: 4120 AVEKNTEDEK---AVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEKNTED---EKAIEK 4173
Query: 187 INELQEYLEEDEAREYGLKKDSNDSRKKGGRRVLDNEEDED----EDEDEDEEDEDEEEL 242
E ++ +E++ E +++++ D + V +N EDE EDE +++ E+
Sbjct: 4174 NTEDEKAVEKNTEDEKAVEQNTEDEKV-----VEENTEDEKAVEKNTEDEKAVEKNTEDE 4228
Query: 243 GVFGDSDDNEEEDEHRQKLENAGYEDFFGKLEEDSGLDDEEDEDEAVETKKNDNL 297
V + ++E+ +E + + EN G E+ +D + +++ E++ ++N +
Sbjct: 4229 KVVEEKIEDEKGEEQKAEEENVGIEEVEKVQIDDYKVSEKKGENKNCTYEENGKI 4283
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.128 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,336,182
Number of Sequences: 539616
Number of extensions: 12011269
Number of successful extensions: 295820
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2725
Number of HSP's successfully gapped in prelim test: 3380
Number of HSP's that attempted gapping in prelim test: 92379
Number of HSP's gapped (non-prelim): 64289
length of query: 553
length of database: 191,569,459
effective HSP length: 123
effective length of query: 430
effective length of database: 125,196,691
effective search space: 53834577130
effective search space used: 53834577130
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 64 (29.3 bits)