Query 038342
Match_columns 553
No_of_seqs 158 out of 255
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gpv_G Nuclear receptor corepr 35.5 14 0.00049 24.7 1.2 22 362-384 2-23 (26)
2 1a92_A Delta antigen; leucine 15.7 1.3E+02 0.0043 23.2 3.2 22 299-324 18-39 (50)
3 2z5i_A TM, general control pro 14.9 43 0.0015 25.7 0.5 22 301-322 11-32 (52)
4 3fhk_A UPF0403 protein YPHP; d 13.8 83 0.0028 29.1 2.2 56 14-74 72-140 (147)
5 3omy_A Protein TRAM; DNA bindi 13.6 1.3E+02 0.0044 23.4 2.9 25 356-381 7-31 (52)
6 3swy_A Cyclic nucleotide-gated 13.1 1E+02 0.0035 23.3 2.1 21 297-317 25-45 (46)
7 3zs9_C Golgi to ER traffic pro 10.9 1.8E+02 0.006 21.3 2.6 14 505-518 2-15 (38)
8 2ovm_B NCOR, progesterone rece 10.7 1.3E+02 0.0045 20.1 1.8 13 362-374 10-22 (26)
9 3swf_A CGMP-gated cation chann 9.0 1.5E+02 0.0051 24.5 1.9 22 297-318 27-48 (74)
10 2ca6_A RAN GTPase-activating p 8.7 90 0.0031 30.7 0.7 43 127-169 338-380 (386)
No 1
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=35.45 E-value=14 Score=24.66 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHhhhCCCCccccc
Q 038342 362 TASLEEMIKKRIIEGQFDDVEKA 384 (553)
Q Consensus 362 T~~LEdiIKqRI~d~~FDDV~rk 384 (553)
+.-||+||++.+. +.||++.-+
T Consensus 2 n~gleaiirkalm-g~yd~~e~~ 23 (26)
T 2gpv_G 2 NMGLEAIIRKALM-GKYDQWEEX 23 (26)
T ss_pred ccCHHHHHHHHHc-cchhhHhhh
Confidence 4569999999876 889997543
No 2
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=15.71 E-value=1.3e+02 Score=23.17 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCc
Q 038342 299 THEKQSEQLRAEIEKMEKANLDPKTW 324 (553)
Q Consensus 299 ~~ekrq~kl~~~I~~LE~e~v~~K~W 324 (553)
.+++...+.++.|.+||.+| ||
T Consensus 18 eler~lrk~kk~iKklEdeN----PW 39 (50)
T 1a92_A 18 ELERDLRKLKKKIKKLEEDN----PW 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----TT
T ss_pred HHHHHHHHHHHHHHhhhccC----Cc
Confidence 47888899999999999987 67
No 3
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=14.95 E-value=43 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 038342 301 EKQSEQLRAEIEKMEKANLDPK 322 (553)
Q Consensus 301 ekrq~kl~~~I~~LE~e~v~~K 322 (553)
|+.-.+|++.|.+||.+++..|
T Consensus 11 ERsV~KLek~ID~LEdeL~~eK 32 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQK 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 6778899999999999887654
No 4
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=13.79 E-value=83 Score=29.08 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=41.2
Q ss_pred HHHhhhcCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCCCCC-------------CchhhhcCCChHHHHHHHH
Q 038342 14 LHRLKSTEPPVWLAPRAELSETARKASKIIFSYLRPYAPKSP-------------LDQLLIEGFDAEQIWQQID 74 (553)
Q Consensus 14 l~~l~~~~Pe~FLspq~ela~~~~sltK~LYd~~k~~~~~sp-------------L~ELvvegFD~EQIWQQLE 74 (553)
|+. .++|..++|+=++.-..+++-+...| .++.|.|| ++.-.|+|.++++|-+.|.
T Consensus 72 l~~--~kkPD~lvTVFAGqDkEAt~~aR~yf---~~~pPSSPS~ALfKdGelVh~ieRh~IEGr~a~~Ia~~L~ 140 (147)
T 3fhk_A 72 LQN--DKTPDNTVTVFAGQDKEATAKMREYF---TGAAPSSPSMALLKGKEVVHFIPRHEIEGHDMEEIMKNLT 140 (147)
T ss_dssp HHC--SSCCSEEEEEETTTSHHHHHHHHTTS---TTCCCCSSEEEEEETTEEEEEECGGGTTTSCHHHHHHHHH
T ss_pred hhc--CCCCCceEEeccCCCHHHHHHHHHhc---CCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHH
Confidence 554 68899888876666555555555544 46667666 6788899999999998875
No 5
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=13.63 E-value=1.3e+02 Score=23.38 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=21.1
Q ss_pred CcchhhhhhHHHHHHHHhhhCCCCcc
Q 038342 356 VITEEFTASLEEMIKKRIIEGQFDDV 381 (553)
Q Consensus 356 vITEE~T~~LEdiIKqRI~d~~FDDV 381 (553)
-+..++-..|-+|+-+|+.+|+ .||
T Consensus 7 Y~s~~v~~~I~~iVe~r~qeGA-~dv 31 (52)
T 3omy_A 7 YVNNNVYEQITDLVTIRKQEGI-EEA 31 (52)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTC-TTC
T ss_pred eechHHHHHHHHHHHHHHHcCc-ccc
Confidence 3577888899999999999999 555
No 6
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=13.07 E-value=1e+02 Score=23.30 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHHHHHHHh
Q 038342 297 LSTHEKQSEQLRAEIEKMEKA 317 (553)
Q Consensus 297 ~S~~ekrq~kl~~~I~~LE~e 317 (553)
+..|+--|.+|+++|.+||..
T Consensus 25 lae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 25 LAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456788899999999999975
No 7
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=10.86 E-value=1.8e+02 Score=21.32 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=9.4
Q ss_pred ccCCHHHHHHHHHh
Q 038342 505 AELTKAERKRRRAS 518 (553)
Q Consensus 505 ~E~T~~erkr~Rr~ 518 (553)
+|||..++.|.||-
T Consensus 2 sels~~ekaRlrRE 15 (38)
T 3zs9_C 2 SELTEAEKRRLLRE 15 (38)
T ss_dssp --CCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHH
Confidence 58999998876653
No 8
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=10.74 E-value=1.3e+02 Score=20.12 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHhh
Q 038342 362 TASLEEMIKKRII 374 (553)
Q Consensus 362 T~~LEdiIKqRI~ 374 (553)
+.-||+||++.+.
T Consensus 10 ~~gleaiirkalm 22 (26)
T 2ovm_B 10 NLGLEDIIRKALM 22 (26)
T ss_pred ccCHHHHHHHHHh
Confidence 6789999998776
No 9
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=9.01 E-value=1.5e+02 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHHHHHHHHHhc
Q 038342 297 LSTHEKQSEQLRAEIEKMEKAN 318 (553)
Q Consensus 297 ~S~~ekrq~kl~~~I~~LE~e~ 318 (553)
+.-|+--|.+|+++|.+||...
T Consensus 27 LaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 27 LAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5667888999999999999865
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=8.74 E-value=90 Score=30.67 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=0.0
Q ss_pred cccCCCcccccCCCCCCCCCCCCCCcchhhhHhhhcCCchhhh
Q 038342 127 AVESDDFDEDLDDGLDDDDDDDDDDDEEEEEEEEVEGSEGEEE 169 (553)
Q Consensus 127 ~~e~~~e~e~~~~e~ee~~~~~~~d~~~e~~e~e~~~~~~~~e 169 (553)
++.+..++++++++.+++++++++++++++.+++...++...+
T Consensus 338 ~~~d~~~e~e~e~eeeee~eee~~~~e~~~~~~~~~~~~~~~~ 380 (386)
T 2ca6_A 338 DELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 380 (386)
T ss_dssp CCCCSCC------------------------------------
T ss_pred hhcccccccccccccccccccccccccccchhhhhhhHHHHHH
Done!