Query 038342
Match_columns 553
No_of_seqs 158 out of 255
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 17:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038342.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038342hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l8ya_ a.21.1.1 (A:) Nucleola 22.2 14 0.001 28.9 1.1 10 66-75 10-19 (84)
2 d2cosa1 a.5.2.1 (A:8-48) Serin 5.9 1.9E+02 0.014 19.4 2.8 23 56-78 6-28 (41)
3 d1lsha1 a.118.4.1 (A:285-620) 5.0 4.2E+02 0.031 24.0 5.8 85 19-105 5-97 (336)
4 d1rp3a2 a.4.13.2 (A:164-234) S 4.9 2.5E+02 0.019 19.2 3.2 54 38-91 10-65 (71)
5 d1s3aa1 c.47.1.22 (A:15-99) NA 4.8 1.5E+02 0.011 22.3 1.8 17 58-74 62-78 (85)
6 d1f6da_ c.87.1.3 (A:) UDP-N-ac 3.9 98 0.0071 29.1 0.1 16 445-460 136-151 (376)
7 d2omoa1 d.58.4.11 (A:1-98) Hyp 3.6 4.9E+02 0.036 18.6 4.2 70 26-98 8-88 (98)
8 d1vlpa1 d.41.2.2 (A:1-149) Nic 3.6 2.2E+02 0.016 23.7 2.1 18 398-415 10-27 (149)
9 d1jeya1 b.131.1.1 (A:254-534) 3.5 8.6E+02 0.062 21.2 6.6 68 3-87 202-275 (281)
10 d1ut9a1 a.102.1.2 (A:306-816) 3.5 5E+02 0.037 24.7 5.2 49 28-76 209-267 (511)
No 1
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.16 E-value=14 Score=28.87 Aligned_cols=10 Identities=60% Similarity=0.979 Sum_probs=8.0
Q ss_pred hHHHHHHHHh
Q 038342 66 AEQIWQQIDL 75 (553)
Q Consensus 66 ~EQIWQQLEL 75 (553)
+++||||-=+
T Consensus 10 aeeiWQqsvI 19 (84)
T d1l8ya_ 10 AEEIWQQSVI 19 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7999999644
No 2
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.91 E-value=1.9e+02 Score=19.36 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=16.5
Q ss_pred CchhhhcCCChHHHHHHHHhhhh
Q 038342 56 LDQLLIEGFDAEQIWQQIDLQSQ 78 (553)
Q Consensus 56 L~ELvvegFD~EQIWQQLELqN~ 78 (553)
|++|+.-|||.+=.-+-|.--|.
T Consensus 6 lqdl~~aG~D~~m~iral~qt~~ 28 (41)
T d2cosa1 6 LQELVNAGCDQEMAGRALKQTGS 28 (41)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCc
Confidence 78899999999876665553333
No 3
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}
Probab=4.98 E-value=4.2e+02 Score=24.04 Aligned_cols=85 Identities=12% Similarity=0.211 Sum_probs=55.9
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCCC-CC--Cchhhh--cCCCh---HHHHHHHHhhhhhhHHHHHHHHHH
Q 038342 19 STEPPVWLAPRAELSETARKASKIIFSYLRPYAPK-SP--LDQLLI--EGFDA---EQIWQQIDLQSQPLLSSLKREVKK 90 (553)
Q Consensus 19 ~~~Pe~FLspq~ela~~~~sltK~LYd~~k~~~~~-sp--L~ELvv--egFD~---EQIWQQLELqN~plL~~l~~~v~~ 90 (553)
...-.+|++-.+++...+..++++|-...+..... .| +-+||- -.++. +|||+|+.- +.-.-..|..+|..
T Consensus 5 ~~~~~~~~~k~~~~~~~~~~~l~~L~~~~~~~v~~~~~~kF~~Lv~~lR~~~~e~l~~v~~~~~~-~~~~r~~~lDal~~ 83 (336)
T d1lsha1 5 TKMSSLFVTKGKNLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQ-QKDYRRWILDAVPA 83 (336)
T ss_dssp HHSCSSCCCTTSCHHHHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-SHHHHHHHHHHHHH
T ss_pred ccCCcchhhcCCCHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCHHHHHHHHHHHhc-ChhHHHHHHHHHHH
Confidence 44557889999999999999999998887654433 23 445543 35655 568999853 33345667777777
Q ss_pred HhcCcccchhhhhhh
Q 038342 91 FEKKPEEIGKIREVL 105 (553)
Q Consensus 91 ~~~~~~~~~l~~e~~ 105 (553)
+...+. +..+.+.+
T Consensus 84 ~GT~~a-~~~i~~~I 97 (336)
T d1lsha1 84 MATSEA-LLFLKRTL 97 (336)
T ss_dssp HCSHHH-HHHHHHHH
T ss_pred hCCHHH-HHHHHHHH
Confidence 665443 44443444
No 4
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=4.89 E-value=2.5e+02 Score=19.21 Aligned_cols=54 Identities=4% Similarity=0.132 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCCCC--CCCchhhhcCCChHHHHHHHHhhhhhhHHHHHHHHHHH
Q 038342 38 KASKIIFSYLRPYAPK--SPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVKKF 91 (553)
Q Consensus 38 sltK~LYd~~k~~~~~--spL~ELvvegFD~EQIWQQLELqN~plL~~l~~~v~~~ 91 (553)
.....|+..+....+. ..|--.+++|+.-++|=+.+-+--..+-.++.++++++
T Consensus 10 e~~~~l~~~l~~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ra~~~L 65 (71)
T d1rp3a2 10 ELTEKVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERL 65 (71)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhHhCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4455666666544333 33555677999999999999999888888888877755
No 5
>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.82 E-value=1.5e+02 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=14.1
Q ss_pred hhhhcCCChHHHHHHHH
Q 038342 58 QLLIEGFDAEQIWQQID 74 (553)
Q Consensus 58 ELvvegFD~EQIWQQLE 74 (553)
..-+.|+++++|+++|+
T Consensus 62 ~i~l~n~~~~eI~~~l~ 78 (85)
T d1s3aa1 62 NVPLNNFSADQVTRALE 78 (85)
T ss_dssp EEECTTCCHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHH
Confidence 34468999999999995
No 6
>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}
Probab=3.93 E-value=98 Score=29.06 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=13.5
Q ss_pred HHHhhhccCCcCCCCC
Q 038342 445 LKLDALSHFHFTPKPV 460 (553)
Q Consensus 445 ~kLDaLSn~hFtPKp~ 460 (553)
+..+.|||+||+|-..
T Consensus 136 ~~iskls~~hf~~~~~ 151 (376)
T d1f6da_ 136 TLTGHLAMYHFSPTET 151 (376)
T ss_dssp HHHHHTCSEEEESSHH
T ss_pred hhhccceeEEEeccHH
Confidence 5678899999999874
No 7
>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621 {Nitrosomonas europaea [TaxId: 915]}
Probab=3.63 E-value=4.9e+02 Score=18.59 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=54.9
Q ss_pred CCCChhHHHHHHHHHHHHHHhcCCCCCC-----------CCCchhhhcCCChHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Q 038342 26 LAPRAELSETARKASKIIFSYLRPYAPK-----------SPLDQLLIEGFDAEQIWQQIDLQSQPLLSSLKREVKKFEKK 94 (553)
Q Consensus 26 Lspq~ela~~~~sltK~LYd~~k~~~~~-----------spL~ELvvegFD~EQIWQQLELqN~plL~~l~~~v~~~~~~ 94 (553)
+++.++....|+++.+.+...... .|+ .|-.=++++-|....-|+. =.+.|..+.+...+..++..
T Consensus 8 ~~vkp~~~~~f~~~~~~~~~~~~~-epG~l~~~~~~~~~~p~~~~~~E~w~s~~a~~~--H~~s~~~~~~~~~~~~ll~~ 84 (98)
T d2omoa1 8 ASVKTDKTEAFKEATRMNHEQSIR-EPGNMRFDILQSADDPTRFVLYEAYKTRKDAAA--HKETAHYLTWRDTVADWMAE 84 (98)
T ss_dssp EEBCGGGHHHHHHHHHHHHHHHTT-STTEEEEEEEEESSCTTEEEEEEEESSHHHHHH--HTTSHHHHHHHHHHGGGBSS
T ss_pred EEECcCcHHHHHHHHHHHHHHHhc-CCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHH--HHhCHHHHHHHHHHHHHhcC
Confidence 567789999999999999998864 444 4444577788999999976 35678889999999998887
Q ss_pred cccc
Q 038342 95 PEEI 98 (553)
Q Consensus 95 ~~~~ 98 (553)
|..+
T Consensus 85 p~~~ 88 (98)
T d2omoa1 85 PRKG 88 (98)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 7644
No 8
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.59 E-value=2.2e+02 Score=23.73 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=8.9
Q ss_pred ccccccchhHHHHHHHHH
Q 038342 398 LDENKSKKGLAEVYEEEY 415 (553)
Q Consensus 398 Ld~eKSK~sLaEiYE~eY 415 (553)
|+.---|..-++.|=..|
T Consensus 10 LdTDlYklTM~qa~~~~~ 27 (149)
T d1vlpa1 10 LDTDMYKITMHAAVFTNF 27 (149)
T ss_dssp TSSBHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 333344555566555444
No 9
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.51 E-value=8.6e+02 Score=21.20 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=33.4
Q ss_pred chhHhhhhHHHHHHhhhc-CCCCCCCCChhHHHHHHHHHHHHHHhcC-----CCCCCCCCchhhhcCCChHHHHHHHHhh
Q 038342 3 TKSEASLNLDLLHRLKST-EPPVWLAPRAELSETARKASKIIFSYLR-----PYAPKSPLDQLLIEGFDAEQIWQQIDLQ 76 (553)
Q Consensus 3 ~~~~~~~~~~~l~~l~~~-~Pe~FLspq~ela~~~~sltK~LYd~~k-----~~~~~spL~ELvvegFD~EQIWQQLELq 76 (553)
+..+.+++......|... +|..|-.| ..+++|..+. ...|..|++..+ -+.+.|++.+
T Consensus 202 ~~eql~~a~~lI~~l~~~~~p~~~~NP----------~lq~~~~~l~a~al~~~~p~~~~D~t~---P~~~~~~kr~--- 265 (281)
T d1jeya1 202 TPEQVGKMKAIVEKLRFTYRSDSFENP----------VLQQHFRNLEALALDLMEPEQAVDLTL---PKVEAMNKRL--- 265 (281)
T ss_dssp CHHHHHHHHHHHHHTBCCCCTTSCCCH----------HHHHHHHHHHHHHTTCSSCCCCCCTTS---CCHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhcccCCChhhCCCH----------HHHHHHHHHHHHhcCCCCCCCCCCccC---CChHHHHHHH---
Confidence 344445555555555444 67777665 2333333332 112223333322 3667777764
Q ss_pred hhhhHHHHHHH
Q 038342 77 SQPLLSSLKRE 87 (553)
Q Consensus 77 N~plL~~l~~~ 87 (553)
.+++..|++.
T Consensus 266 -~~~~~~~~~~ 275 (281)
T d1jeya1 266 -GSLVDEFKEL 275 (281)
T ss_dssp -TTHHHHHHHH
T ss_pred -HHHHHHHHHh
Confidence 3666666554
No 10
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]}
Probab=3.50 E-value=5e+02 Score=24.72 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=33.4
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCCCC---------CCCchhhh-cCCChHHHHHHHHhh
Q 038342 28 PRAELSETARKASKIIFSYLRPYAPK---------SPLDQLLI-EGFDAEQIWQQIDLQ 76 (553)
Q Consensus 28 pq~ela~~~~sltK~LYd~~k~~~~~---------spL~ELvv-egFD~EQIWQQLELq 76 (553)
..+..|+.++..++.+|++.+..... .+...-+- .++.+|=+|=-++|-
T Consensus 209 ~d~~yA~~~L~~A~~~y~fa~~~~~~~~~~~~~~~~~~~~~Y~~~~~~De~~wAA~~Ly 267 (511)
T d1ut9a1 209 YDPTFAADCLEKAEIAWQAALKHPDIYAEYTPGSGGPGGGPYNDDYVGDEFYWAACELY 267 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCTTCCBCCCCSSSSCBSCCCCBSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCccCCCccccCCcccccHHHHHHHHHH
Confidence 45899999999999999998643111 11111222 356788899999873
Done!