BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038343
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
           Protein
 pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
 pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
           Allosteric Inhibitor (Prmt3- Ktd)
          Length = 340

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 20  IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLES 79
           IF +K   +VG G G++ +  A   A KV   D   +    M   + LN+L    +L++ 
Sbjct: 62  IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAM-DIIRLNKLEDTITLIK- 119

Query: 80  YEDPNVVQCVHLPWES 95
                 ++ VHLP E 
Sbjct: 120 ----GKIEEVHLPVEK 131


>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
           The Primitive Red Alga Cyanidioschyzon Merolae
 pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
           The Primitive Red Alga Cyanidioschyzon Merolae
          Length = 281

 Score = 30.4 bits (67), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 20  IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTD-GDHLTLANMRSNLELNQLSTDTSLLE 78
           + + K+  E+G+G GLV I      A +V  TD  D   L ++ SN+  +  ++ +S   
Sbjct: 77  LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETV 136

Query: 79  SYEDPNVVQCVHLPWESASES-----GLSAFVPEIILGADILYDRSCFPDLVRILAILL 132
               P VV      W  + +S     GL  F  +++L AD+L        L+R +  LL
Sbjct: 137 KRASPKVVPYR---WGDSPDSLQRCTGLQRF--QVVLLADLLSFHQAHDALLRSVKXLL 190


>pdb|3VMA|A Chain A, Crystal Structure Of The Full-Length Transglycosylase
           Pbp1b From Escherichia Coli
          Length = 768

 Score = 28.9 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 52  DGDHL-TLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92
           DGDHL T+ NM +N +      D  L+     PN  Q + +P
Sbjct: 140 DGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVP 181


>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
           Arginine Methyltransferase Prmt3
          Length = 321

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 20  IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLES 79
           IF +K   +VG G G++ +  A   A KV   D   +    M   + LN+L     L++ 
Sbjct: 43  IFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAM-DIIRLNKLEDTIVLIK- 100

Query: 80  YEDPNVVQCVHLPWES 95
                 ++ V LP E 
Sbjct: 101 ----GKIEEVSLPVEK 112


>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
          Length = 194

 Score = 27.3 bits (59), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 26  CFEVGSGVGLVGICLA-HVKASKVTLTDGDHLTLANMRSNLELNQLST------DTSLLE 78
             ++G G G++GI LA  VK++  T  D +   +   + N++LN L         + L E
Sbjct: 56  ILDLGCGYGVIGIALADEVKST--TXADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE 113

Query: 79  SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYD 117
           + +D    + +  P   A +  L   + E   G ++L D
Sbjct: 114 NVKDRKYNKIITNPPIRAGKEVLHRIIEE---GKELLKD 149


>pdb|4DOH|R Chain R, Il20IL201IL20R2 TERNARY COMPLEX
 pdb|4DOH|E Chain E, Il20IL201IL20R2 TERNARY COMPLEX
          Length = 221

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 25/37 (67%)

Query: 55  HLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91
           ++++ N +SN   +Q  T+ +L+ ++ +PN + CVH+
Sbjct: 154 NVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHV 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,538,031
Number of Sequences: 62578
Number of extensions: 147250
Number of successful extensions: 373
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 7
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)