Query 038343
Match_columns 191
No_of_seqs 317 out of 2378
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 3.8E-30 8.3E-35 190.7 9.4 125 1-136 18-150 (173)
2 KOG3201 Uncharacterized conser 99.9 1.1E-24 2.3E-29 154.9 2.9 144 2-158 9-154 (201)
3 COG3897 Predicted methyltransf 99.8 8.4E-19 1.8E-23 128.7 7.5 128 1-150 58-185 (218)
4 KOG2793 Putative N2,N2-dimethy 99.8 4.8E-18 1E-22 130.8 11.7 144 2-188 55-210 (248)
5 COG2227 UbiG 2-polyprenyl-3-me 99.8 5.7E-18 1.2E-22 128.7 9.5 98 21-136 58-155 (243)
6 KOG1270 Methyltransferases [Co 99.7 1.2E-16 2.5E-21 122.5 7.6 101 23-137 90-190 (282)
7 PF05175 MTS: Methyltransferas 99.7 1.1E-15 2.3E-20 113.1 11.3 111 6-137 19-135 (170)
8 PLN02396 hexaprenyldihydroxybe 99.6 5.5E-15 1.2E-19 119.2 12.2 103 21-139 130-232 (322)
9 PF13847 Methyltransf_31: Meth 99.6 1.3E-14 2.7E-19 105.4 12.2 100 22-136 3-104 (152)
10 PF12847 Methyltransf_18: Meth 99.6 5.1E-15 1.1E-19 101.7 9.4 100 22-136 1-105 (112)
11 COG4123 Predicted O-methyltran 99.6 3.2E-14 7E-19 109.7 12.1 117 7-140 33-168 (248)
12 TIGR00537 hemK_rel_arch HemK-r 99.6 9.8E-14 2.1E-18 103.4 14.4 107 7-137 8-135 (179)
13 PRK11207 tellurite resistance 99.6 3.3E-14 7.1E-19 107.6 11.9 101 21-139 29-131 (197)
14 PRK11036 putative S-adenosyl-L 99.6 2E-14 4.4E-19 112.9 11.0 106 22-142 44-149 (255)
15 COG2264 PrmA Ribosomal protein 99.6 2.1E-14 4.5E-19 113.6 10.8 110 7-137 149-258 (300)
16 PLN02244 tocopherol O-methyltr 99.6 6.5E-14 1.4E-18 114.3 14.0 105 21-141 117-222 (340)
17 COG2226 UbiE Methylase involve 99.6 3.4E-14 7.4E-19 109.5 11.5 110 22-147 51-161 (238)
18 PF08241 Methyltransf_11: Meth 99.6 1.2E-14 2.6E-19 96.5 7.3 92 27-137 1-92 (95)
19 TIGR00477 tehB tellurite resis 99.6 5.5E-14 1.2E-18 106.2 11.7 100 21-139 29-130 (195)
20 PF06325 PrmA: Ribosomal prote 99.5 2.8E-14 6E-19 113.6 9.4 107 6-136 147-253 (295)
21 PRK15068 tRNA mo(5)U34 methylt 99.5 1.1E-13 2.3E-18 112.1 12.8 104 20-139 120-223 (322)
22 TIGR00452 methyltransferase, p 99.5 1.4E-13 3.1E-18 110.6 12.8 105 19-139 118-222 (314)
23 PF01209 Ubie_methyltran: ubiE 99.5 7.5E-14 1.6E-18 108.1 8.5 115 21-151 46-162 (233)
24 PLN02233 ubiquinone biosynthes 99.5 6.1E-13 1.3E-17 104.8 13.2 111 21-144 72-184 (261)
25 PRK12335 tellurite resistance 99.5 4E-13 8.7E-18 107.3 11.7 99 22-139 120-220 (287)
26 PF02353 CMAS: Mycolic acid cy 99.5 4.4E-13 9.5E-18 106.0 11.4 109 10-137 50-161 (273)
27 TIGR00138 gidB 16S rRNA methyl 99.5 8.8E-13 1.9E-17 98.4 12.5 98 21-139 41-139 (181)
28 COG2230 Cfa Cyclopropane fatty 99.5 7.1E-13 1.5E-17 104.1 12.4 109 12-139 62-173 (283)
29 PTZ00098 phosphoethanolamine N 99.5 4.8E-13 1E-17 105.5 11.2 109 14-140 44-154 (263)
30 TIGR02752 MenG_heptapren 2-hep 99.5 2.7E-12 5.9E-17 99.2 15.1 103 21-139 44-148 (231)
31 PRK14967 putative methyltransf 99.5 3.9E-12 8.4E-17 98.0 15.6 114 7-139 22-156 (223)
32 PLN02336 phosphoethanolamine N 99.5 8.4E-13 1.8E-17 112.3 13.1 102 21-139 265-366 (475)
33 PF08242 Methyltransf_12: Meth 99.5 7.3E-15 1.6E-19 99.0 0.3 96 27-136 1-97 (99)
34 PRK00107 gidB 16S rRNA methylt 99.5 1.3E-12 2.8E-17 97.9 12.4 99 22-141 45-144 (187)
35 TIGR00406 prmA ribosomal prote 99.5 2.2E-12 4.8E-17 103.0 13.9 111 5-137 144-254 (288)
36 PF03848 TehB: Tellurite resis 99.5 4.4E-13 9.5E-18 100.2 9.0 102 20-140 28-131 (192)
37 PRK14968 putative methyltransf 99.5 3.5E-12 7.6E-17 95.3 13.8 116 4-139 9-145 (188)
38 PRK15001 SAM-dependent 23S rib 99.4 1.1E-12 2.3E-17 107.8 11.8 105 23-141 229-339 (378)
39 PRK10258 biotin biosynthesis p 99.4 1.4E-12 3E-17 102.1 11.2 99 22-142 42-140 (251)
40 PRK00517 prmA ribosomal protei 99.4 4E-12 8.7E-17 99.6 13.2 105 5-137 104-208 (250)
41 PRK01683 trans-aconitate 2-met 99.4 3.1E-12 6.8E-17 100.5 12.3 98 21-140 30-128 (258)
42 COG2813 RsmC 16S RNA G1207 met 99.4 4.3E-12 9.3E-17 100.0 12.7 103 22-142 158-266 (300)
43 smart00828 PKS_MT Methyltransf 99.4 2E-12 4.3E-17 99.5 10.7 101 24-140 1-102 (224)
44 PRK11873 arsM arsenite S-adeno 99.4 3E-12 6.6E-17 101.4 12.0 104 21-140 76-181 (272)
45 KOG1499 Protein arginine N-met 99.4 6.8E-13 1.5E-17 105.9 8.1 122 14-151 52-180 (346)
46 PF13489 Methyltransf_23: Meth 99.4 3E-13 6.4E-18 98.4 5.4 91 20-137 20-110 (161)
47 PRK14103 trans-aconitate 2-met 99.4 2.5E-12 5.4E-17 101.0 10.9 96 21-140 28-124 (255)
48 PRK05134 bifunctional 3-demeth 99.4 3.8E-12 8.3E-17 98.5 11.8 112 11-139 37-148 (233)
49 TIGR02021 BchM-ChlM magnesium 99.4 8.7E-12 1.9E-16 95.7 13.7 97 20-135 53-151 (219)
50 PRK08317 hypothetical protein; 99.4 6.8E-12 1.5E-16 96.8 13.0 119 5-140 2-122 (241)
51 PF08003 Methyltransf_9: Prote 99.4 6.4E-12 1.4E-16 99.1 12.3 119 4-139 98-216 (315)
52 PRK00216 ubiE ubiquinone/menaq 99.4 1.8E-11 3.9E-16 94.6 14.9 102 22-138 51-154 (239)
53 PF05401 NodS: Nodulation prot 99.4 1E-12 2.3E-17 97.5 7.3 93 24-136 45-140 (201)
54 PRK09489 rsmC 16S ribosomal RN 99.4 1.2E-11 2.6E-16 100.8 14.1 100 23-141 197-302 (342)
55 TIGR00095 RNA methyltransferas 99.4 4.6E-12 9.9E-17 95.2 10.8 104 20-135 47-152 (189)
56 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.3E-11 2.7E-16 104.2 13.8 107 7-130 282-389 (443)
57 TIGR02469 CbiT precorrin-6Y C5 99.4 2.9E-11 6.3E-16 84.1 13.4 106 14-137 11-117 (124)
58 PRK08287 cobalt-precorrin-6Y C 99.4 4.7E-11 1E-15 89.5 15.3 98 20-138 29-127 (187)
59 COG2263 Predicted RNA methylas 99.4 8.5E-12 1.8E-16 91.8 10.7 80 17-116 40-119 (198)
60 PF13659 Methyltransf_26: Meth 99.4 7.4E-13 1.6E-17 91.6 4.8 101 23-136 1-109 (117)
61 COG2890 HemK Methylase of poly 99.4 3.5E-11 7.6E-16 95.6 14.8 89 7-114 96-185 (280)
62 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.3E-11 2.9E-16 93.2 11.5 99 21-135 52-152 (199)
63 TIGR01983 UbiG ubiquinone bios 99.4 1.5E-11 3.3E-16 94.5 11.9 102 21-138 44-145 (224)
64 PF13649 Methyltransf_25: Meth 99.3 8.1E-13 1.8E-17 89.3 4.1 94 26-136 1-101 (101)
65 PRK15451 tRNA cmo(5)U34 methyl 99.3 8.5E-12 1.8E-16 97.6 10.3 101 22-139 56-161 (247)
66 TIGR02072 BioC biotin biosynth 99.3 1.1E-11 2.4E-16 95.8 10.8 98 22-139 34-132 (240)
67 KOG4300 Predicted methyltransf 99.3 9.9E-12 2.1E-16 92.5 9.9 98 25-137 79-177 (252)
68 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.6E-11 3.4E-16 99.7 11.7 100 22-140 113-213 (340)
69 PLN02585 magnesium protoporphy 99.3 2.3E-11 4.9E-16 98.0 12.0 95 21-130 143-239 (315)
70 TIGR03533 L3_gln_methyl protei 99.3 4.2E-11 9E-16 95.5 13.4 100 22-137 121-246 (284)
71 PRK14966 unknown domain/N5-glu 99.3 8E-11 1.7E-15 97.4 15.2 113 7-137 238-376 (423)
72 PRK13944 protein-L-isoaspartat 99.3 4.8E-11 1E-15 90.8 12.8 107 12-139 62-170 (205)
73 TIGR00740 methyltransferase, p 99.3 2.7E-11 5.8E-16 94.3 11.6 99 22-137 53-156 (239)
74 TIGR03704 PrmC_rel_meth putati 99.3 7.6E-11 1.7E-15 92.4 14.2 115 6-137 69-211 (251)
75 TIGR00536 hemK_fam HemK family 99.3 8E-11 1.7E-15 93.9 14.3 98 24-137 116-239 (284)
76 PRK15128 23S rRNA m(5)C1962 me 99.3 1.5E-11 3.1E-16 102.1 10.1 105 21-137 219-334 (396)
77 TIGR03534 RF_mod_PrmC protein- 99.3 1.4E-10 3.1E-15 90.5 14.5 115 5-137 71-212 (251)
78 PRK09328 N5-glutamine S-adenos 99.3 7E-11 1.5E-15 93.6 13.0 116 6-138 92-234 (275)
79 PRK11705 cyclopropane fatty ac 99.3 2.8E-11 6.1E-16 100.2 11.0 102 16-140 161-265 (383)
80 PRK05785 hypothetical protein; 99.3 2.5E-11 5.3E-16 93.8 10.0 90 22-135 51-140 (226)
81 TIGR03587 Pse_Me-ase pseudamin 99.3 4.2E-11 9.1E-16 91.1 11.1 93 22-137 43-136 (204)
82 PRK07580 Mg-protoporphyrin IX 99.3 4.1E-11 9E-16 92.4 11.1 93 21-132 62-156 (230)
83 PRK00121 trmB tRNA (guanine-N( 99.3 4.4E-11 9.6E-16 90.8 10.7 103 22-138 40-152 (202)
84 TIGR00080 pimt protein-L-isoas 99.3 6.7E-11 1.4E-15 90.7 11.7 108 11-140 66-175 (215)
85 PRK11805 N5-glutamine S-adenos 99.3 9.6E-11 2.1E-15 94.3 13.0 100 24-139 135-260 (307)
86 PRK13942 protein-L-isoaspartat 99.3 1.1E-10 2.5E-15 89.2 12.4 110 9-140 63-174 (212)
87 PRK00377 cbiT cobalt-precorrin 99.3 1.4E-10 3.1E-15 87.7 12.9 105 18-139 36-142 (198)
88 PRK01544 bifunctional N5-gluta 99.3 1.8E-10 4E-15 98.5 14.6 101 23-139 139-266 (506)
89 TIGR02085 meth_trns_rumB 23S r 99.2 1.2E-10 2.7E-15 96.2 12.6 91 22-130 233-323 (374)
90 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1.7E-10 3.6E-15 88.3 12.4 101 22-140 39-141 (223)
91 COG2265 TrmA SAM-dependent met 99.2 8.1E-11 1.7E-15 98.4 11.2 129 7-190 278-406 (432)
92 PRK03522 rumB 23S rRNA methylu 99.2 9.2E-11 2E-15 94.9 11.2 75 22-112 173-247 (315)
93 KOG1500 Protein arginine N-met 99.2 6E-11 1.3E-15 94.3 9.7 106 16-139 171-279 (517)
94 PRK00312 pcm protein-L-isoaspa 99.2 2.6E-10 5.6E-15 87.2 12.7 109 9-140 65-173 (212)
95 PRK06202 hypothetical protein; 99.2 2.5E-10 5.5E-15 88.4 12.3 93 22-133 60-159 (232)
96 TIGR02716 C20_methyl_CrtF C-20 99.2 2.6E-10 5.6E-15 91.9 12.5 109 14-140 141-252 (306)
97 PRK04266 fibrillarin; Provisio 99.2 3.5E-10 7.6E-15 87.2 12.0 104 19-140 69-174 (226)
98 PRK11783 rlmL 23S rRNA m(2)G24 99.2 9.6E-11 2.1E-15 103.9 10.0 104 22-138 538-652 (702)
99 PF03602 Cons_hypoth95: Conser 99.2 2.1E-11 4.5E-16 91.1 4.9 103 21-136 41-147 (183)
100 PRK06922 hypothetical protein; 99.2 1.2E-10 2.7E-15 100.6 10.1 105 21-140 417-535 (677)
101 PLN02336 phosphoethanolamine N 99.2 1.6E-10 3.6E-15 98.3 10.5 101 21-138 36-138 (475)
102 TIGR00479 rumA 23S rRNA (uraci 99.2 3E-10 6.6E-15 95.6 12.0 111 8-135 278-389 (431)
103 cd02440 AdoMet_MTases S-adenos 99.2 2.7E-10 5.9E-15 75.6 9.5 97 25-136 1-98 (107)
104 TIGR00091 tRNA (guanine-N(7)-) 99.2 2.5E-10 5.3E-15 86.2 10.3 105 22-139 16-129 (194)
105 KOG3010 Methyltransferase [Gen 99.2 4.2E-11 9.1E-16 91.1 5.5 96 25-139 36-133 (261)
106 KOG1540 Ubiquinone biosynthesi 99.2 4E-10 8.7E-15 86.5 10.6 128 21-161 99-233 (296)
107 TIGR01177 conserved hypothetic 99.2 7.6E-10 1.6E-14 90.1 12.8 113 9-139 169-291 (329)
108 PLN03075 nicotianamine synthas 99.2 9.7E-10 2.1E-14 87.3 13.0 103 22-139 123-230 (296)
109 KOG1271 Methyltransferases [Ge 99.1 7E-10 1.5E-14 81.2 10.4 116 7-137 48-176 (227)
110 PRK14904 16S rRNA methyltransf 99.1 2.6E-09 5.7E-14 90.3 15.5 99 21-137 249-372 (445)
111 smart00138 MeTrc Methyltransfe 99.1 4.6E-10 9.9E-15 88.6 10.2 115 22-139 99-239 (264)
112 TIGR00563 rsmB ribosomal RNA s 99.1 2.4E-09 5.1E-14 90.1 14.5 114 7-137 227-363 (426)
113 PRK07402 precorrin-6B methylas 99.1 2E-09 4.2E-14 81.3 12.6 102 19-139 37-139 (196)
114 PRK14901 16S rRNA methyltransf 99.1 2.4E-09 5.2E-14 90.2 14.4 104 21-137 251-379 (434)
115 COG2242 CobL Precorrin-6B meth 99.1 2.6E-09 5.6E-14 78.9 12.7 98 20-137 32-130 (187)
116 TIGR02081 metW methionine bios 99.1 6.1E-10 1.3E-14 84.0 9.7 92 22-134 13-104 (194)
117 COG0742 N6-adenine-specific me 99.1 6.3E-10 1.4E-14 82.4 9.2 104 20-136 41-148 (187)
118 PRK14902 16S rRNA methyltransf 99.1 3.1E-09 6.7E-14 89.9 14.4 100 22-137 250-374 (444)
119 PLN02781 Probable caffeoyl-CoA 99.1 3.2E-10 6.9E-15 88.0 7.7 102 21-137 67-173 (234)
120 COG4976 Predicted methyltransf 99.1 1E-11 2.3E-16 93.7 -0.6 98 23-140 126-223 (287)
121 PRK04457 spermidine synthase; 99.1 1E-09 2.3E-14 86.5 10.7 104 22-140 66-175 (262)
122 TIGR03840 TMPT_Se_Te thiopurin 99.1 1.5E-09 3.2E-14 83.1 10.8 129 7-142 20-152 (213)
123 PRK05031 tRNA (uracil-5-)-meth 99.1 1.1E-09 2.5E-14 90.1 10.7 107 7-130 192-311 (362)
124 PRK11188 rrmJ 23S rRNA methylt 99.1 1.9E-09 4E-14 82.3 11.1 96 21-140 50-163 (209)
125 TIGR02143 trmA_only tRNA (urac 99.1 1.4E-09 3E-14 89.3 11.0 62 8-71 184-245 (353)
126 TIGR00446 nop2p NOL1/NOP2/sun 99.1 4.3E-09 9.3E-14 83.1 13.1 100 22-137 71-194 (264)
127 PRK10901 16S rRNA methyltransf 99.1 6.8E-09 1.5E-13 87.3 15.0 103 21-138 243-368 (427)
128 COG2518 Pcm Protein-L-isoaspar 99.1 3.5E-09 7.6E-14 79.7 11.8 111 9-142 59-169 (209)
129 PRK14903 16S rRNA methyltransf 99.1 5.6E-09 1.2E-13 87.9 14.4 101 21-137 236-361 (431)
130 TIGR00478 tly hemolysin TlyA f 99.1 1.2E-09 2.7E-14 84.1 9.4 110 3-137 56-166 (228)
131 KOG2920 Predicted methyltransf 99.1 6.5E-11 1.4E-15 92.3 2.3 131 2-139 93-231 (282)
132 PF07021 MetW: Methionine bios 99.1 4.5E-10 9.8E-15 83.4 6.6 88 22-131 13-101 (193)
133 COG2519 GCD14 tRNA(1-methylade 99.1 4.3E-09 9.3E-14 81.1 12.1 111 13-146 85-197 (256)
134 PRK13943 protein-L-isoaspartat 99.0 4.6E-09 9.9E-14 85.0 12.7 105 13-139 71-177 (322)
135 KOG2904 Predicted methyltransf 99.0 2.5E-09 5.4E-14 82.9 10.5 86 19-116 145-233 (328)
136 COG4106 Tam Trans-aconitate me 99.0 1.2E-09 2.6E-14 82.0 8.0 94 22-137 30-124 (257)
137 COG1092 Predicted SAM-dependen 99.0 1.1E-09 2.3E-14 90.3 8.1 106 21-137 216-331 (393)
138 PHA03411 putative methyltransf 99.0 3.5E-09 7.7E-14 83.1 10.6 98 23-142 65-183 (279)
139 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.8E-09 8.1E-14 87.0 11.2 105 22-140 122-233 (390)
140 PTZ00146 fibrillarin; Provisio 99.0 5.9E-09 1.3E-13 82.7 11.6 110 20-146 130-241 (293)
141 COG4122 Predicted O-methyltran 99.0 2.9E-09 6.2E-14 81.2 9.2 100 22-137 59-161 (219)
142 PLN02672 methionine S-methyltr 99.0 4.3E-09 9.3E-14 96.1 11.3 107 6-114 101-212 (1082)
143 PRK11727 23S rRNA mA1618 methy 99.0 3E-09 6.5E-14 85.8 9.3 86 22-119 114-203 (321)
144 PRK13255 thiopurine S-methyltr 99.0 4.7E-09 1E-13 80.6 9.9 126 8-140 24-153 (218)
145 PF05958 tRNA_U5-meth_tr: tRNA 99.0 3.2E-09 7E-14 87.1 9.4 64 6-71 181-244 (352)
146 PF05185 PRMT5: PRMT5 arginine 99.0 4.5E-09 9.7E-14 88.5 9.9 102 22-139 186-294 (448)
147 PRK04148 hypothetical protein; 99.0 4.9E-09 1.1E-13 73.9 8.5 99 9-136 3-102 (134)
148 TIGR03438 probable methyltrans 99.0 8.9E-09 1.9E-13 82.8 10.9 107 22-140 63-175 (301)
149 smart00650 rADc Ribosomal RNA 98.9 7.1E-09 1.5E-13 76.5 9.3 81 18-118 9-89 (169)
150 PF10672 Methyltrans_SAM: S-ad 98.9 1.2E-09 2.6E-14 86.6 5.3 105 22-137 123-233 (286)
151 PRK00811 spermidine synthase; 98.9 7.1E-09 1.5E-13 82.7 9.6 107 22-139 76-188 (283)
152 PRK11088 rrmA 23S rRNA methylt 98.9 1.1E-08 2.5E-13 81.1 10.3 92 22-141 85-180 (272)
153 PHA03412 putative methyltransf 98.9 7.6E-09 1.7E-13 79.6 8.8 93 22-136 49-157 (241)
154 PLN02476 O-methyltransferase 98.9 7.5E-09 1.6E-13 81.8 8.5 102 21-137 117-223 (278)
155 KOG3420 Predicted RNA methylas 98.9 5.7E-09 1.2E-13 73.7 6.8 86 14-116 40-125 (185)
156 TIGR00438 rrmJ cell division p 98.9 6.2E-08 1.3E-12 72.7 12.6 108 9-140 19-144 (188)
157 PRK04338 N(2),N(2)-dimethylgua 98.9 2.3E-08 5.1E-13 82.7 10.7 94 23-136 58-152 (382)
158 PF01135 PCMT: Protein-L-isoas 98.9 1E-08 2.2E-13 78.1 7.9 106 13-140 63-170 (209)
159 KOG1541 Predicted protein carb 98.9 5.9E-08 1.3E-12 73.3 11.5 95 22-137 50-155 (270)
160 TIGR00308 TRM1 tRNA(guanine-26 98.8 4.1E-08 8.9E-13 81.0 11.5 96 23-137 45-142 (374)
161 PF01596 Methyltransf_3: O-met 98.8 2.7E-09 5.8E-14 81.1 4.0 101 21-136 44-149 (205)
162 TIGR00417 speE spermidine synt 98.8 4.2E-08 9.1E-13 77.8 10.1 108 23-141 73-185 (270)
163 PF08704 GCD14: tRNA methyltra 98.8 8.2E-08 1.8E-12 74.8 11.4 112 16-146 34-148 (247)
164 PRK14896 ksgA 16S ribosomal RN 98.8 4.5E-08 9.7E-13 77.1 9.8 86 10-116 17-102 (258)
165 KOG3191 Predicted N6-DNA-methy 98.8 1.2E-07 2.6E-12 69.6 10.9 74 23-114 44-119 (209)
166 PTZ00338 dimethyladenosine tra 98.8 5.2E-08 1.1E-12 78.0 10.0 89 12-119 26-114 (294)
167 PF02475 Met_10: Met-10+ like- 98.8 1.8E-08 3.8E-13 76.2 6.7 96 21-136 100-196 (200)
168 PF05219 DREV: DREV methyltran 98.8 6.8E-08 1.5E-12 74.9 9.9 92 22-139 94-185 (265)
169 PRK00274 ksgA 16S ribosomal RN 98.8 4.9E-08 1.1E-12 77.4 9.1 88 10-118 30-117 (272)
170 PF06080 DUF938: Protein of un 98.7 1.3E-07 2.9E-12 71.2 10.2 107 25-138 28-137 (204)
171 KOG2361 Predicted methyltransf 98.7 2.4E-08 5.1E-13 76.3 5.9 101 25-139 74-180 (264)
172 PLN02366 spermidine synthase 98.7 4.1E-07 9E-12 73.3 12.5 106 22-138 91-202 (308)
173 PLN02589 caffeoyl-CoA O-methyl 98.7 1.1E-07 2.3E-12 74.2 7.8 101 22-137 79-185 (247)
174 COG2520 Predicted methyltransf 98.7 1.8E-07 4E-12 75.7 9.4 97 22-137 188-284 (341)
175 PRK13256 thiopurine S-methyltr 98.6 5.3E-07 1.1E-11 69.4 10.2 131 8-143 30-164 (226)
176 PRK01581 speE spermidine synth 98.6 4.9E-07 1.1E-11 73.8 10.4 103 22-137 150-263 (374)
177 PRK03612 spermidine synthase; 98.6 1.9E-07 4.2E-12 80.4 8.6 108 22-139 297-412 (521)
178 KOG2187 tRNA uracil-5-methyltr 98.6 4.5E-07 9.8E-12 76.1 9.9 65 6-71 367-431 (534)
179 PF00891 Methyltransf_2: O-met 98.6 3E-07 6.5E-12 71.6 8.1 88 22-135 100-190 (241)
180 PF03291 Pox_MCEL: mRNA cappin 98.6 2.4E-07 5.3E-12 75.3 7.7 128 6-136 46-180 (331)
181 COG1041 Predicted DNA modifica 98.6 7.6E-07 1.7E-11 71.9 10.3 111 9-137 184-305 (347)
182 PF09445 Methyltransf_15: RNA 98.5 1.8E-07 3.8E-12 68.3 5.3 76 25-113 2-77 (163)
183 COG3963 Phospholipid N-methylt 98.5 1.4E-06 3E-11 63.2 9.1 124 3-144 29-158 (194)
184 TIGR00755 ksgA dimethyladenosi 98.5 1.1E-06 2.3E-11 69.1 9.3 85 11-117 18-105 (253)
185 PF05971 Methyltransf_10: Prot 98.5 1.4E-06 3E-11 69.5 9.8 86 23-120 103-192 (299)
186 KOG2899 Predicted methyltransf 98.4 1.7E-06 3.7E-11 66.3 8.7 116 19-137 55-204 (288)
187 PF05724 TPMT: Thiopurine S-me 98.4 4.4E-07 9.6E-12 69.6 5.5 124 7-137 23-150 (218)
188 PLN02823 spermine synthase 98.4 5.5E-06 1.2E-10 67.5 11.3 103 22-137 103-215 (336)
189 PF02527 GidB: rRNA small subu 98.4 4.4E-06 9.5E-11 62.4 9.4 92 25-137 51-143 (184)
190 COG4076 Predicted RNA methylas 98.3 1.3E-06 2.7E-11 64.6 5.9 97 24-139 34-132 (252)
191 KOG2497 Predicted methyltransf 98.3 6.8E-07 1.5E-11 70.0 4.2 128 1-139 69-197 (262)
192 PRK11933 yebU rRNA (cytosine-C 98.3 2.8E-05 6E-10 66.1 13.7 101 21-136 112-236 (470)
193 PF01170 UPF0020: Putative RNA 98.3 8.3E-06 1.8E-10 60.8 9.1 93 9-117 15-117 (179)
194 PF02390 Methyltransf_4: Putat 98.3 9.1E-06 2E-10 61.4 9.2 100 25-137 20-128 (195)
195 PLN02232 ubiquinone biosynthes 98.3 4E-06 8.7E-11 61.3 7.1 83 49-144 1-83 (160)
196 KOG2940 Predicted methyltransf 98.2 1.5E-06 3.2E-11 66.3 4.5 99 23-139 73-171 (325)
197 PHA01634 hypothetical protein 98.2 1.3E-05 2.8E-10 55.6 8.1 52 20-71 26-77 (156)
198 COG0357 GidB Predicted S-adeno 98.2 1.5E-05 3.2E-10 60.8 9.0 95 23-138 68-164 (215)
199 PRK00536 speE spermidine synth 98.2 3.5E-05 7.6E-10 60.6 11.1 97 22-139 72-168 (262)
200 COG1189 Predicted rRNA methyla 98.1 1.6E-05 3.6E-10 60.9 8.5 114 5-139 62-175 (245)
201 KOG0820 Ribosomal RNA adenine 98.1 2.5E-05 5.5E-10 61.0 9.3 76 19-112 55-130 (315)
202 COG0030 KsgA Dimethyladenosine 98.1 2.8E-05 6.1E-10 60.9 9.2 88 12-118 20-107 (259)
203 TIGR01444 fkbM_fam methyltrans 98.1 2.1E-05 4.5E-10 56.0 7.7 47 25-71 1-48 (143)
204 PF01861 DUF43: Protein of unk 98.1 0.00026 5.7E-09 54.6 13.5 115 3-135 26-141 (243)
205 KOG1975 mRNA cap methyltransfe 98.0 2.2E-05 4.8E-10 62.7 7.8 108 22-136 117-231 (389)
206 PRK11760 putative 23S rRNA C24 98.0 0.00023 4.9E-09 57.8 13.1 102 6-135 188-296 (357)
207 PF01739 CheR: CheR methyltran 98.0 1.4E-05 2.9E-10 60.4 5.6 113 22-137 31-170 (196)
208 COG0220 Predicted S-adenosylme 98.0 4.7E-05 1E-09 58.7 8.5 102 24-138 50-160 (227)
209 PRK11783 rlmL 23S rRNA m(2)G24 98.0 0.00014 3E-09 65.1 12.2 112 9-133 176-335 (702)
210 KOG1661 Protein-L-isoaspartate 97.9 6.5E-05 1.4E-09 56.6 7.9 109 20-140 80-191 (237)
211 COG2521 Predicted archaeal met 97.9 7.9E-06 1.7E-10 62.5 3.1 113 22-146 134-249 (287)
212 PRK10742 putative methyltransf 97.9 7.8E-05 1.7E-09 57.9 8.6 89 25-122 91-180 (250)
213 COG0421 SpeE Spermidine syntha 97.9 0.00017 3.6E-09 57.5 10.7 102 24-137 78-185 (282)
214 PRK10611 chemotaxis methyltran 97.9 5.1E-05 1.1E-09 60.6 7.6 113 23-137 116-257 (287)
215 COG1352 CheR Methylase of chem 97.9 0.0002 4.3E-09 56.6 10.6 112 22-136 96-235 (268)
216 PF00398 RrnaAD: Ribosomal RNA 97.9 4.3E-05 9.2E-10 60.4 6.6 103 10-131 18-120 (262)
217 KOG1709 Guanidinoacetate methy 97.9 4.9E-05 1.1E-09 57.5 6.5 103 21-139 100-203 (271)
218 COG0116 Predicted N6-adenine-s 97.9 0.0003 6.6E-09 57.8 11.5 92 9-116 178-309 (381)
219 PF01564 Spermine_synth: Sperm 97.8 3.3E-05 7.1E-10 60.5 5.4 105 22-137 76-186 (246)
220 PF08123 DOT1: Histone methyla 97.8 5.8E-05 1.3E-09 57.4 6.3 112 19-135 39-151 (205)
221 COG0144 Sun tRNA and rRNA cyto 97.8 0.0015 3.2E-08 53.9 14.6 103 21-136 155-282 (355)
222 PF12147 Methyltransf_20: Puta 97.8 0.0007 1.5E-08 53.7 12.0 104 22-137 135-244 (311)
223 PF05891 Methyltransf_PK: AdoM 97.8 5.6E-05 1.2E-09 57.4 5.5 106 22-146 55-163 (218)
224 KOG2915 tRNA(1-methyladenosine 97.8 0.00057 1.2E-08 53.6 11.0 115 15-148 98-214 (314)
225 PRK00050 16S rRNA m(4)C1402 me 97.8 7.5E-05 1.6E-09 59.8 6.4 47 21-67 18-66 (296)
226 KOG1501 Arginine N-methyltrans 97.8 8.1E-05 1.8E-09 61.8 6.6 100 25-138 69-171 (636)
227 PF09243 Rsm22: Mitochondrial 97.7 0.00045 9.7E-09 54.9 10.1 94 20-131 31-127 (274)
228 PF13679 Methyltransf_32: Meth 97.7 0.00019 4.1E-09 51.3 6.7 49 21-69 24-77 (141)
229 KOG3987 Uncharacterized conser 97.6 1.1E-05 2.3E-10 60.7 -0.1 94 22-141 112-205 (288)
230 KOG2730 Methylase [General fun 97.6 3.3E-05 7.2E-10 58.5 2.4 100 23-135 95-195 (263)
231 KOG1663 O-methyltransferase [S 97.6 0.00041 9E-09 53.0 7.4 103 20-137 71-178 (237)
232 PF07942 N2227: N2227-like pro 97.5 0.0015 3.3E-08 51.6 10.8 115 22-139 56-199 (270)
233 PF04816 DUF633: Family of unk 97.5 0.00038 8.2E-09 53.0 7.0 73 26-114 1-75 (205)
234 PF02384 N6_Mtase: N-6 DNA Met 97.5 0.00034 7.4E-09 56.5 6.9 120 10-141 34-182 (311)
235 TIGR02987 met_A_Alw26 type II 97.5 0.00054 1.2E-08 59.3 8.6 48 22-69 31-87 (524)
236 PRK01544 bifunctional N5-gluta 97.5 0.00089 1.9E-08 57.8 9.2 104 22-139 347-459 (506)
237 PF11968 DUF3321: Putative met 97.4 0.001 2.2E-08 50.6 7.5 103 5-137 30-139 (219)
238 COG0500 SmtA SAM-dependent met 97.3 0.0058 1.3E-07 42.5 10.9 99 26-140 52-153 (257)
239 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.00025 5.4E-09 55.7 2.0 121 19-139 53-196 (256)
240 PF01269 Fibrillarin: Fibrilla 97.1 0.0096 2.1E-07 45.6 9.9 114 9-139 57-175 (229)
241 COG0293 FtsJ 23S rRNA methylas 97.0 0.004 8.7E-08 47.1 7.6 108 6-138 29-155 (205)
242 PF05148 Methyltransf_8: Hypot 97.0 0.0049 1.1E-07 46.8 7.9 91 10-137 63-153 (219)
243 KOG1269 SAM-dependent methyltr 97.0 0.0023 5.1E-08 52.8 6.6 104 21-139 109-212 (364)
244 COG2384 Predicted SAM-dependen 97.0 0.023 5E-07 43.4 11.3 76 23-113 17-93 (226)
245 TIGR03439 methyl_EasF probable 96.9 0.012 2.7E-07 47.7 9.7 106 22-138 76-193 (319)
246 PF03141 Methyltransf_29: Puta 96.8 0.00048 1E-08 58.3 1.4 92 25-137 120-214 (506)
247 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.8 0.0077 1.7E-07 48.1 8.0 50 22-71 85-136 (283)
248 PF01728 FtsJ: FtsJ-like methy 96.8 0.0028 6.2E-08 47.0 5.2 52 5-56 4-59 (181)
249 KOG2352 Predicted spermine/spe 96.8 0.016 3.5E-07 49.0 10.1 110 24-150 50-172 (482)
250 cd00315 Cyt_C5_DNA_methylase C 96.7 0.0055 1.2E-07 48.8 6.5 42 25-66 2-43 (275)
251 PF03059 NAS: Nicotianamine sy 96.7 0.025 5.4E-07 45.0 10.1 98 24-136 122-224 (276)
252 COG1889 NOP1 Fibrillarin-like 96.6 0.074 1.6E-06 40.2 11.2 101 20-137 74-175 (231)
253 KOG1227 Putative methyltransfe 96.5 0.0023 4.9E-08 50.9 3.2 50 22-71 194-244 (351)
254 PF02005 TRM: N2,N2-dimethylgu 96.5 0.0025 5.5E-08 52.9 3.6 97 23-136 50-148 (377)
255 KOG3045 Predicted RNA methylas 96.4 0.028 6E-07 44.1 8.3 80 22-137 180-259 (325)
256 KOG2078 tRNA modification enzy 96.3 0.0036 7.8E-08 52.1 2.9 50 22-72 249-298 (495)
257 COG3129 Predicted SAM-dependen 96.2 0.024 5.2E-07 43.7 7.0 97 9-118 63-166 (292)
258 KOG1122 tRNA and rRNA cytosine 96.1 0.18 3.8E-06 42.3 12.0 101 22-136 241-365 (460)
259 KOG2671 Putative RNA methylase 96.1 0.0071 1.5E-07 49.1 3.8 85 18-117 204-295 (421)
260 COG1568 Predicted methyltransf 96.0 0.06 1.3E-06 42.7 8.3 93 20-135 150-243 (354)
261 PF01555 N6_N4_Mtase: DNA meth 95.9 0.022 4.7E-07 43.3 5.7 53 9-63 179-231 (231)
262 PF04445 SAM_MT: Putative SAM- 95.8 0.031 6.7E-07 43.3 6.0 101 25-133 78-182 (234)
263 KOG3178 Hydroxyindole-O-methyl 95.7 0.051 1.1E-06 44.2 7.4 92 24-139 179-272 (342)
264 COG1867 TRM1 N2,N2-dimethylgua 95.7 0.065 1.4E-06 44.0 7.6 96 23-137 53-149 (380)
265 PF13578 Methyltransf_24: Meth 95.6 0.0005 1.1E-08 46.4 -4.0 95 27-136 1-99 (106)
266 TIGR00006 S-adenosyl-methyltra 95.5 0.083 1.8E-06 42.6 7.8 48 21-68 19-67 (305)
267 PRK11524 putative methyltransf 95.5 0.069 1.5E-06 42.7 7.2 46 21-67 207-252 (284)
268 COG4262 Predicted spermidine s 95.4 0.059 1.3E-06 44.4 6.6 102 24-138 291-403 (508)
269 COG5459 Predicted rRNA methyla 95.4 0.067 1.5E-06 43.8 6.8 100 19-136 110-219 (484)
270 KOG0024 Sorbitol dehydrogenase 95.1 0.059 1.3E-06 43.6 5.7 44 20-63 167-212 (354)
271 PRK13699 putative methylase; P 95.0 0.14 3.1E-06 39.5 7.4 46 22-68 163-208 (227)
272 KOG2798 Putative trehalase [Ca 94.8 0.18 4E-06 40.6 7.7 126 23-157 151-305 (369)
273 PF07091 FmrO: Ribosomal RNA m 94.8 0.19 4.2E-06 39.3 7.6 73 23-113 106-179 (251)
274 PF07757 AdoMet_MTase: Predict 94.5 0.088 1.9E-06 35.7 4.5 30 23-53 59-88 (112)
275 COG0270 Dcm Site-specific DNA 93.8 0.24 5.3E-06 40.4 6.6 44 23-66 3-46 (328)
276 KOG2651 rRNA adenine N-6-methy 93.7 0.22 4.8E-06 41.2 6.1 53 9-62 140-193 (476)
277 PF00145 DNA_methylase: C-5 cy 93.7 0.15 3.2E-06 41.1 5.2 42 25-66 2-43 (335)
278 PF02636 Methyltransf_28: Puta 93.6 0.17 3.7E-06 39.6 5.2 44 23-66 19-71 (252)
279 PF11599 AviRa: RRNA methyltra 93.5 0.3 6.5E-06 37.4 6.2 46 23-68 52-100 (246)
280 COG1565 Uncharacterized conser 93.5 0.36 7.7E-06 39.8 7.0 61 8-68 60-132 (370)
281 PRK09424 pntA NAD(P) transhydr 93.4 0.88 1.9E-05 39.5 9.6 43 20-63 162-206 (509)
282 COG2961 ComJ Protein involved 92.9 1.8 4E-05 33.9 9.7 113 7-136 74-187 (279)
283 PF10237 N6-adenineMlase: Prob 92.8 2.3 4.9E-05 31.1 9.7 104 7-136 12-117 (162)
284 COG1179 Dinucleotide-utilizing 92.8 0.36 7.7E-06 37.6 5.7 46 20-65 27-74 (263)
285 PF04672 Methyltransf_19: S-ad 92.7 0.37 7.9E-06 38.2 5.8 100 25-137 71-185 (267)
286 KOG4058 Uncharacterized conser 92.7 0.69 1.5E-05 33.4 6.6 50 22-71 72-121 (199)
287 cd00755 YgdL_like Family of ac 92.4 0.65 1.4E-05 36.0 6.9 41 21-61 9-51 (231)
288 PRK12548 shikimate 5-dehydroge 91.9 1.8 3.9E-05 34.7 9.1 35 20-55 123-160 (289)
289 PF03686 UPF0146: Uncharacteri 91.7 0.45 9.8E-06 33.2 4.7 44 9-56 3-47 (127)
290 COG1255 Uncharacterized protei 91.6 0.82 1.8E-05 31.4 5.7 80 25-137 16-96 (129)
291 TIGR02356 adenyl_thiF thiazole 91.5 0.72 1.6E-05 34.9 6.1 36 20-55 18-55 (202)
292 KOG1253 tRNA methyltransferase 91.5 0.062 1.3E-06 45.7 0.3 50 22-71 109-160 (525)
293 COG1064 AdhP Zn-dependent alco 91.4 0.97 2.1E-05 37.1 7.1 93 19-141 163-258 (339)
294 TIGR02354 thiF_fam2 thiamine b 91.0 1.1 2.4E-05 33.9 6.7 35 20-54 18-54 (200)
295 TIGR00675 dcm DNA-methyltransf 90.6 0.54 1.2E-05 38.2 5.0 41 26-66 1-41 (315)
296 KOG2018 Predicted dinucleotide 90.3 1.3 2.9E-05 35.9 6.7 43 21-63 72-116 (430)
297 cd01487 E1_ThiF_like E1_ThiF_l 90.3 2.1 4.5E-05 31.6 7.5 31 25-55 1-33 (174)
298 PF02086 MethyltransfD12: D12 90.1 0.48 1E-05 36.9 4.2 52 10-62 8-59 (260)
299 COG0286 HsdM Type I restrictio 89.6 2.5 5.5E-05 36.6 8.5 50 22-71 186-240 (489)
300 KOG4589 Cell division protein 89.5 0.51 1.1E-05 35.4 3.5 34 20-53 67-102 (232)
301 PRK15116 sulfur acceptor prote 89.4 2.6 5.6E-05 33.5 7.8 38 20-57 27-66 (268)
302 KOG1596 Fibrillarin and relate 89.1 1.3 2.7E-05 34.7 5.6 112 17-150 151-269 (317)
303 PRK06124 gluconate 5-dehydroge 89.0 7.6 0.00016 29.8 10.2 79 21-114 9-97 (256)
304 PRK12475 thiamine/molybdopteri 88.9 1.9 4.1E-05 35.4 6.9 36 20-55 21-58 (338)
305 PF03141 Methyltransf_29: Puta 88.5 0.5 1.1E-05 40.5 3.3 93 24-139 367-464 (506)
306 cd00757 ThiF_MoeB_HesA_family 88.3 1.4 3.1E-05 33.9 5.6 35 21-55 19-55 (228)
307 COG1063 Tdh Threonine dehydrog 88.3 2 4.4E-05 35.4 6.7 95 22-140 168-267 (350)
308 PRK08644 thiamine biosynthesis 88.2 3.9 8.5E-05 31.2 7.9 35 20-54 25-61 (212)
309 KOG2912 Predicted DNA methylas 87.8 0.68 1.5E-05 37.6 3.5 78 27-118 107-191 (419)
310 PRK07688 thiamine/molybdopteri 87.6 2.3 5E-05 35.0 6.6 35 21-55 22-58 (339)
311 PRK05708 2-dehydropantoate 2-r 87.4 5.4 0.00012 32.2 8.6 94 24-136 3-98 (305)
312 PF11899 DUF3419: Protein of u 87.4 2.7 5.9E-05 35.1 7.0 60 2-66 19-78 (380)
313 cd01483 E1_enzyme_family Super 87.4 3.9 8.4E-05 28.8 7.0 31 25-55 1-33 (143)
314 PF06962 rRNA_methylase: Putat 87.3 1.1 2.3E-05 32.0 3.9 77 47-137 1-87 (140)
315 PF04989 CmcI: Cephalosporin h 87.2 2.4 5.2E-05 32.3 6.0 100 22-136 32-141 (206)
316 PRK10458 DNA cytosine methylas 87.2 1.6 3.4E-05 37.6 5.6 43 23-65 88-130 (467)
317 PLN02668 indole-3-acetate carb 87.0 3.6 7.8E-05 34.5 7.4 26 98-123 155-180 (386)
318 cd01491 Ube1_repeat1 Ubiquitin 86.5 11 0.00024 30.3 9.7 36 21-56 17-54 (286)
319 KOG0725 Reductases with broad 86.4 15 0.00032 29.2 10.6 116 19-146 4-151 (270)
320 COG1748 LYS9 Saccharopine dehy 86.3 1.8 3.9E-05 36.2 5.4 72 24-113 2-76 (389)
321 KOG1331 Predicted methyltransf 86.3 1.7 3.7E-05 34.7 5.0 93 22-139 45-140 (293)
322 PRK07904 short chain dehydroge 86.1 13 0.00029 28.7 10.0 78 22-112 7-94 (253)
323 PF02737 3HCDH_N: 3-hydroxyacy 86.0 2.7 5.8E-05 31.2 5.7 119 26-158 2-126 (180)
324 PF05206 TRM13: Methyltransfer 86.0 1.9 4.2E-05 34.0 5.2 34 21-54 17-56 (259)
325 PRK08339 short chain dehydroge 86.0 14 0.0003 28.8 10.1 79 21-113 6-93 (263)
326 KOG2539 Mitochondrial/chloropl 85.9 1.6 3.4E-05 37.2 4.8 100 20-131 198-300 (491)
327 PRK08762 molybdopterin biosynt 85.7 2.7 5.9E-05 35.0 6.2 34 21-54 133-168 (376)
328 PRK07109 short chain dehydroge 85.7 14 0.00031 30.0 10.3 79 21-114 6-94 (334)
329 PRK12749 quinate/shikimate deh 85.6 10 0.00022 30.4 9.2 37 20-56 121-159 (288)
330 COG0275 Predicted S-adenosylme 85.0 6.5 0.00014 31.8 7.6 54 16-69 17-72 (314)
331 COG0863 DNA modification methy 84.4 5.7 0.00012 31.5 7.4 58 10-69 211-268 (302)
332 PRK05597 molybdopterin biosynt 84.4 3.6 7.8E-05 34.0 6.3 35 21-55 26-62 (355)
333 KOG3115 Methyltransferase-like 84.1 1.8 3.9E-05 33.0 3.9 46 24-69 62-108 (249)
334 cd08283 FDH_like_1 Glutathione 83.7 4.9 0.00011 33.4 6.9 44 20-63 182-227 (386)
335 PRK07523 gluconate 5-dehydroge 83.7 18 0.00038 27.8 10.2 79 21-115 8-97 (255)
336 PRK08085 gluconate 5-dehydroge 83.6 18 0.00038 27.7 10.4 79 21-114 7-95 (254)
337 KOG1201 Hydroxysteroid 17-beta 83.6 4 8.7E-05 32.8 5.9 49 20-69 35-86 (300)
338 PF03721 UDPG_MGDP_dh_N: UDP-g 83.3 2.5 5.4E-05 31.6 4.5 37 25-62 2-40 (185)
339 cd01488 Uba3_RUB Ubiquitin act 83.1 6.2 0.00013 31.8 6.9 32 25-56 1-34 (291)
340 COG4301 Uncharacterized conser 82.8 22 0.00048 28.2 9.8 102 22-136 78-187 (321)
341 COG3392 Adenine-specific DNA m 82.4 3.3 7.1E-05 32.9 4.9 45 8-53 8-57 (330)
342 KOG3924 Putative protein methy 82.4 0.91 2E-05 37.8 2.0 110 21-135 191-301 (419)
343 PRK05600 thiamine biosynthesis 82.3 5.4 0.00012 33.2 6.6 36 21-56 39-76 (370)
344 PRK01438 murD UDP-N-acetylmura 82.3 13 0.00029 31.8 9.2 49 20-69 13-64 (480)
345 PF05050 Methyltransf_21: Meth 82.2 5 0.00011 28.5 5.7 43 28-70 1-50 (167)
346 PF01488 Shikimate_DH: Shikima 82.1 5.4 0.00012 28.0 5.7 46 20-65 9-56 (135)
347 PRK00258 aroE shikimate 5-dehy 82.1 11 0.00023 30.0 8.0 46 20-65 120-167 (278)
348 PF03492 Methyltransf_7: SAM d 81.8 3.1 6.7E-05 34.2 4.9 20 22-41 16-35 (334)
349 TIGR00027 mthyl_TIGR00027 meth 81.5 8.7 0.00019 30.3 7.2 102 24-136 83-191 (260)
350 cd01492 Aos1_SUMO Ubiquitin ac 81.3 2.6 5.7E-05 31.7 4.1 35 21-55 19-55 (197)
351 PRK08267 short chain dehydroge 81.2 17 0.00037 28.0 8.8 73 24-113 2-85 (260)
352 PRK06153 hypothetical protein; 81.1 2.2 4.8E-05 35.7 3.8 36 21-56 174-211 (393)
353 PRK05650 short chain dehydroge 80.8 24 0.00052 27.4 9.7 75 25-114 2-86 (270)
354 PF00106 adh_short: short chai 80.5 5.6 0.00012 28.2 5.5 80 25-118 2-93 (167)
355 COG1004 Ugd Predicted UDP-gluc 80.4 3.3 7.3E-05 34.7 4.6 37 25-62 2-40 (414)
356 cd01485 E1-1_like Ubiquitin ac 80.4 2.3 4.9E-05 32.1 3.4 35 21-55 17-53 (198)
357 PRK05867 short chain dehydroge 80.3 15 0.00032 28.2 8.1 80 21-115 7-96 (253)
358 PF01795 Methyltransf_5: MraW 80.0 1.5 3.3E-05 35.5 2.5 46 21-66 19-65 (310)
359 PRK09880 L-idonate 5-dehydroge 79.8 9.5 0.00021 31.0 7.2 43 21-63 168-212 (343)
360 KOG0821 Predicted ribosomal RN 79.6 5 0.00011 31.1 5.0 50 17-66 45-94 (326)
361 cd01078 NAD_bind_H4MPT_DH NADP 79.6 13 0.00029 27.5 7.4 45 20-65 25-72 (194)
362 TIGR01809 Shik-DH-AROM shikima 78.2 14 0.0003 29.5 7.4 41 21-61 123-165 (282)
363 COG1062 AdhC Zn-dependent alco 77.9 8.1 0.00018 31.8 6.0 44 20-63 183-228 (366)
364 cd08237 ribitol-5-phosphate_DH 77.4 5.6 0.00012 32.4 5.2 42 21-62 162-206 (341)
365 PRK08703 short chain dehydroge 77.3 19 0.00042 27.3 7.9 45 21-66 4-51 (239)
366 TIGR03366 HpnZ_proposed putati 77.2 14 0.0003 29.1 7.2 42 21-62 119-162 (280)
367 PTZ00245 ubiquitin activating 77.1 17 0.00036 29.0 7.3 45 21-65 24-70 (287)
368 cd01489 Uba2_SUMO Ubiquitin ac 77.1 12 0.00027 30.4 6.9 33 25-57 1-35 (312)
369 PRK05565 fabG 3-ketoacyl-(acyl 76.9 29 0.00064 26.1 9.1 78 21-114 3-92 (247)
370 PRK08328 hypothetical protein; 76.9 2.8 6.1E-05 32.4 3.1 36 21-56 25-62 (231)
371 PRK05876 short chain dehydroge 76.7 21 0.00046 28.0 8.1 78 21-113 4-91 (275)
372 cd00401 AdoHcyase S-adenosyl-L 76.7 11 0.00024 32.0 6.7 42 20-62 199-242 (413)
373 PF00899 ThiF: ThiF family; I 76.5 3.3 7.2E-05 28.9 3.2 33 23-55 2-36 (135)
374 PRK14106 murD UDP-N-acetylmura 76.3 16 0.00034 31.0 7.7 34 21-55 3-38 (450)
375 KOG0822 Protein kinase inhibit 76.1 17 0.00037 31.9 7.7 110 24-151 369-491 (649)
376 TIGR01408 Ube1 ubiquitin-activ 75.9 27 0.00058 33.2 9.6 130 21-159 22-158 (1008)
377 PRK06172 short chain dehydroge 75.1 26 0.00056 26.7 8.2 79 21-114 5-93 (253)
378 cd01075 NAD_bind_Leu_Phe_Val_D 74.9 21 0.00046 26.8 7.4 45 18-63 23-69 (200)
379 PRK15001 SAM-dependent 23S rib 74.5 50 0.0011 27.7 11.8 87 25-136 47-136 (378)
380 PTZ00357 methyltransferase; Pr 74.5 38 0.00082 31.0 9.5 103 25-134 703-823 (1072)
381 PRK10669 putative cation:proto 74.2 40 0.00087 29.6 9.9 37 25-62 419-457 (558)
382 PRK07063 short chain dehydroge 74.0 32 0.0007 26.4 8.5 80 21-113 5-94 (260)
383 PRK06139 short chain dehydroge 73.5 26 0.00056 28.5 8.0 78 21-113 5-92 (330)
384 PRK08862 short chain dehydroge 73.5 28 0.0006 26.5 7.8 47 21-68 3-52 (227)
385 PRK09242 tropinone reductase; 72.9 37 0.0008 26.0 8.6 81 20-113 6-96 (257)
386 PRK12549 shikimate 5-dehydroge 72.9 22 0.00048 28.4 7.4 45 21-65 125-171 (284)
387 PRK07035 short chain dehydroge 72.7 33 0.00071 26.2 8.2 45 21-66 6-53 (252)
388 KOG1562 Spermidine synthase [A 72.6 7.8 0.00017 31.3 4.6 109 22-140 121-234 (337)
389 PF07279 DUF1442: Protein of u 72.5 42 0.00091 25.8 10.7 48 22-70 41-94 (218)
390 PRK07890 short chain dehydroge 71.8 37 0.00079 25.9 8.3 79 22-115 4-92 (258)
391 PF03853 YjeF_N: YjeF-related 71.8 5.5 0.00012 29.2 3.5 44 6-50 8-57 (169)
392 PRK09291 short chain dehydroge 71.6 25 0.00054 26.8 7.3 75 24-113 3-81 (257)
393 PRK05786 fabG 3-ketoacyl-(acyl 71.1 42 0.0009 25.2 9.2 43 22-65 4-49 (238)
394 PRK03659 glutathione-regulated 71.0 48 0.001 29.6 9.6 38 24-62 401-440 (601)
395 COG1893 ApbA Ketopantoate redu 70.9 37 0.0008 27.5 8.3 92 25-136 2-95 (307)
396 COG0686 Ald Alanine dehydrogen 70.8 16 0.00034 30.0 5.9 93 23-136 168-262 (371)
397 PRK07097 gluconate 5-dehydroge 70.4 42 0.0009 25.9 8.4 80 21-115 8-97 (265)
398 TIGR01381 E1_like_apg7 E1-like 70.1 6 0.00013 35.4 3.8 37 20-56 335-373 (664)
399 cd01080 NAD_bind_m-THF_DH_Cycl 69.9 27 0.00058 25.7 6.7 41 14-55 35-78 (168)
400 PRK07062 short chain dehydroge 69.6 46 0.00099 25.6 8.5 80 21-113 6-95 (265)
401 PF03269 DUF268: Caenorhabditi 69.5 2.9 6.2E-05 30.7 1.4 33 23-55 2-34 (177)
402 KOG0022 Alcohol dehydrogenase, 69.4 12 0.00025 30.7 4.9 43 21-63 191-235 (375)
403 TIGR02355 moeB molybdopterin s 69.3 7.5 0.00016 30.3 3.8 38 21-58 22-61 (240)
404 PRK07478 short chain dehydroge 69.3 42 0.00091 25.6 8.1 78 21-113 4-91 (254)
405 cd08239 THR_DH_like L-threonin 69.0 26 0.00057 28.1 7.2 44 19-62 160-205 (339)
406 TIGR01963 PHB_DH 3-hydroxybuty 68.9 29 0.00063 26.4 7.1 75 24-114 2-87 (255)
407 PLN02740 Alcohol dehydrogenase 68.7 17 0.00036 30.1 6.0 44 19-62 195-240 (381)
408 PRK08265 short chain dehydroge 68.6 44 0.00096 25.7 8.2 76 21-114 4-89 (261)
409 PRK08223 hypothetical protein; 68.4 4.5 9.7E-05 32.5 2.5 43 21-63 25-69 (287)
410 PRK05854 short chain dehydroge 68.1 49 0.0011 26.5 8.5 80 21-113 12-101 (313)
411 PRK07677 short chain dehydroge 68.0 45 0.00098 25.4 8.1 43 23-66 1-46 (252)
412 TIGR03201 dearomat_had 6-hydro 67.8 26 0.00056 28.5 7.0 43 19-62 163-207 (349)
413 PRK03562 glutathione-regulated 67.4 60 0.0013 29.1 9.6 39 24-63 401-441 (621)
414 PRK02318 mannitol-1-phosphate 67.4 9.7 0.00021 31.8 4.4 40 24-64 1-43 (381)
415 PRK05866 short chain dehydroge 67.3 46 0.001 26.4 8.2 78 21-113 38-125 (293)
416 PRK05690 molybdopterin biosynt 67.2 6 0.00013 30.9 2.9 37 21-57 30-68 (245)
417 TIGR00561 pntA NAD(P) transhyd 66.9 15 0.00033 32.0 5.6 42 21-63 162-205 (511)
418 PRK12826 3-ketoacyl-(acyl-carr 66.9 52 0.0011 24.8 8.2 79 22-116 5-94 (251)
419 TIGR02818 adh_III_F_hyde S-(hy 66.6 20 0.00044 29.4 6.2 44 19-62 182-227 (368)
420 PF03435 Saccharop_dh: Sacchar 66.4 14 0.0003 30.7 5.2 71 26-112 1-74 (386)
421 PRK08324 short chain dehydroge 66.3 85 0.0018 28.4 10.4 43 21-64 420-465 (681)
422 PRK06125 short chain dehydroge 66.2 56 0.0012 25.0 8.3 79 21-113 5-89 (259)
423 KOG2198 tRNA cytosine-5-methyl 66.2 40 0.00087 28.1 7.5 45 21-65 154-203 (375)
424 PRK06194 hypothetical protein; 65.9 48 0.001 25.8 8.0 80 21-115 4-93 (287)
425 PRK08277 D-mannonate oxidoredu 65.7 52 0.0011 25.5 8.1 45 21-66 8-55 (278)
426 PRK07814 short chain dehydroge 65.6 56 0.0012 25.2 8.2 77 21-112 8-94 (263)
427 COG1250 FadB 3-hydroxyacyl-CoA 65.4 29 0.00062 28.3 6.5 125 24-158 4-130 (307)
428 PRK03369 murD UDP-N-acetylmura 65.4 17 0.00036 31.5 5.5 37 21-58 10-48 (488)
429 PRK08213 gluconate 5-dehydroge 65.1 59 0.0013 24.9 8.3 77 21-113 10-97 (259)
430 TIGR01470 cysG_Nterm siroheme 65.0 34 0.00073 25.9 6.6 34 21-55 7-42 (205)
431 PLN02780 ketoreductase/ oxidor 64.8 51 0.0011 26.7 8.0 45 22-67 52-99 (320)
432 cd08233 butanediol_DH_like (2R 64.8 44 0.00095 27.0 7.8 44 19-62 169-214 (351)
433 KOG1099 SAM-dependent methyltr 64.7 3.1 6.7E-05 32.4 0.8 95 20-138 38-159 (294)
434 PRK14027 quinate/shikimate deh 64.1 41 0.00089 26.9 7.2 42 21-62 125-168 (283)
435 PF12242 Eno-Rase_NADH_b: NAD( 64.1 33 0.00072 21.8 5.2 43 11-53 27-72 (78)
436 PRK06949 short chain dehydroge 63.9 63 0.0014 24.6 8.2 79 21-114 7-95 (258)
437 PRK08293 3-hydroxybutyryl-CoA 63.8 24 0.00051 28.1 5.8 41 25-66 5-47 (287)
438 PRK08303 short chain dehydroge 63.7 54 0.0012 26.3 7.9 33 21-54 6-41 (305)
439 cd08281 liver_ADH_like1 Zinc-d 63.6 38 0.00082 27.8 7.2 44 19-62 188-233 (371)
440 TIGR03451 mycoS_dep_FDH mycoth 63.6 27 0.00058 28.5 6.3 44 19-62 173-218 (358)
441 cd05188 MDR Medium chain reduc 63.5 41 0.0009 25.5 7.1 41 21-62 133-175 (271)
442 PRK08589 short chain dehydroge 63.2 69 0.0015 24.9 8.4 77 21-113 4-90 (272)
443 PRK06935 2-deoxy-D-gluconate 3 63.0 66 0.0014 24.6 8.2 87 10-113 3-99 (258)
444 PRK08306 dipicolinate synthase 62.8 47 0.001 26.7 7.4 42 18-60 147-190 (296)
445 TIGR01202 bchC 2-desacetyl-2-h 62.5 19 0.0004 28.8 5.1 83 22-139 144-228 (308)
446 TIGR03206 benzo_BadH 2-hydroxy 62.3 66 0.0014 24.3 8.2 45 22-67 2-49 (250)
447 PRK07791 short chain dehydroge 62.1 61 0.0013 25.5 7.9 34 21-55 4-40 (286)
448 cd05213 NAD_bind_Glutamyl_tRNA 62.0 40 0.00087 27.2 6.9 38 21-58 176-215 (311)
449 PRK07411 hypothetical protein; 62.0 4.9 0.00011 33.7 1.6 41 21-61 36-78 (390)
450 PRK06113 7-alpha-hydroxysteroi 61.9 70 0.0015 24.4 8.1 44 21-65 9-55 (255)
451 PRK07576 short chain dehydroge 61.9 71 0.0015 24.7 8.2 44 21-65 7-53 (264)
452 PF04378 RsmJ: Ribosomal RNA s 61.5 15 0.00031 28.9 4.1 93 27-136 62-156 (245)
453 PRK07819 3-hydroxybutyryl-CoA 61.5 28 0.0006 27.8 5.8 42 25-67 7-50 (286)
454 KOG2304 3-hydroxyacyl-CoA dehy 61.4 32 0.00069 27.0 5.7 47 22-69 10-58 (298)
455 cd08238 sorbose_phosphate_red 61.4 24 0.00053 29.5 5.7 45 20-64 173-222 (410)
456 cd05191 NAD_bind_amino_acid_DH 61.2 39 0.00085 21.4 5.6 36 18-53 18-55 (86)
457 PRK06249 2-dehydropantoate 2-r 61.1 65 0.0014 25.9 8.0 94 23-136 5-100 (313)
458 PRK08643 acetoin reductase; Va 60.8 65 0.0014 24.6 7.7 76 23-113 2-87 (256)
459 TIGR02822 adh_fam_2 zinc-bindi 60.7 34 0.00074 27.6 6.4 88 19-139 162-251 (329)
460 COG0745 OmpR Response regulato 60.7 76 0.0016 24.5 8.1 67 47-131 2-68 (229)
461 KOG1098 Putative SAM-dependent 60.2 16 0.00035 32.6 4.4 50 6-55 28-79 (780)
462 TIGR00936 ahcY adenosylhomocys 60.1 40 0.00086 28.6 6.7 37 20-57 192-230 (406)
463 PRK07878 molybdopterin biosynt 60.0 6.3 0.00014 33.1 2.0 41 21-61 40-82 (392)
464 PRK11524 putative methyltransf 59.6 30 0.00065 27.5 5.7 40 101-140 23-78 (284)
465 PF01262 AlaDh_PNT_C: Alanine 58.6 24 0.00052 25.6 4.7 41 21-62 18-60 (168)
466 KOG2017 Molybdopterin synthase 58.6 13 0.00028 30.8 3.4 42 22-63 65-108 (427)
467 PLN03209 translocon at the inn 58.5 52 0.0011 29.3 7.3 86 20-112 77-166 (576)
468 COG4627 Uncharacterized protei 58.3 1.1 2.3E-05 32.7 -2.4 40 101-140 43-84 (185)
469 PF00670 AdoHcyase_NAD: S-aden 58.2 38 0.00082 24.8 5.5 46 10-56 9-57 (162)
470 PRK08217 fabG 3-ketoacyl-(acyl 58.1 78 0.0017 23.8 8.1 45 21-66 3-50 (253)
471 cd01486 Apg7 Apg7 is an E1-lik 57.9 15 0.00033 29.7 3.7 33 25-57 1-35 (307)
472 PRK00676 hemA glutamyl-tRNA re 57.8 52 0.0011 27.2 6.8 37 19-55 170-208 (338)
473 PRK06035 3-hydroxyacyl-CoA deh 57.7 34 0.00073 27.2 5.8 41 25-66 5-47 (291)
474 PRK06914 short chain dehydroge 57.3 89 0.0019 24.2 8.1 78 23-113 3-89 (280)
475 PRK06720 hypothetical protein; 57.1 73 0.0016 23.2 8.1 45 21-66 14-61 (169)
476 PF13450 NAD_binding_8: NAD(P) 57.1 14 0.0003 22.5 2.7 26 29-55 2-29 (68)
477 PRK07066 3-hydroxybutyryl-CoA 57.0 38 0.00081 27.7 5.9 120 24-156 8-129 (321)
478 PRK09072 short chain dehydroge 57.0 83 0.0018 24.1 7.8 76 22-113 4-88 (263)
479 COG5379 BtaA S-adenosylmethion 57.0 41 0.00088 27.4 5.8 45 22-67 63-107 (414)
480 TIGR03693 ocin_ThiF_like putat 56.3 1.1E+02 0.0025 27.4 9.0 35 21-55 127-163 (637)
481 cd01065 NAD_bind_Shikimate_DH 56.2 67 0.0014 22.4 7.8 45 20-64 16-62 (155)
482 PLN02827 Alcohol dehydrogenase 55.8 42 0.00091 27.7 6.2 44 19-62 190-235 (378)
483 COG4017 Uncharacterized protei 55.1 30 0.00066 26.3 4.6 43 20-64 42-86 (254)
484 PRK08340 glucose-1-dehydrogena 55.1 76 0.0017 24.3 7.3 41 25-66 2-45 (259)
485 PF03514 GRAS: GRAS domain fam 54.9 1.3E+02 0.0027 25.2 9.3 47 22-68 110-168 (374)
486 TIGR01035 hemA glutamyl-tRNA r 54.7 58 0.0013 27.6 6.9 39 20-58 177-217 (417)
487 COG0169 AroE Shikimate 5-dehyd 54.7 1.1E+02 0.0024 24.5 9.7 48 19-66 122-171 (283)
488 PRK06129 3-hydroxyacyl-CoA deh 54.6 38 0.00083 27.2 5.6 40 25-65 4-45 (308)
489 PRK09260 3-hydroxybutyryl-CoA 54.5 39 0.00084 26.8 5.6 40 25-65 3-44 (288)
490 PRK07231 fabG 3-ketoacyl-(acyl 54.3 92 0.002 23.5 7.9 78 21-114 3-90 (251)
491 cd08263 Zn_ADH10 Alcohol dehyd 54.3 61 0.0013 26.4 6.9 41 21-61 186-228 (367)
492 PRK07792 fabG 3-ketoacyl-(acyl 54.3 1.1E+02 0.0024 24.4 8.5 79 20-113 9-97 (306)
493 PRK00045 hemA glutamyl-tRNA re 54.3 63 0.0014 27.4 7.1 39 21-59 180-220 (423)
494 cd08301 alcohol_DH_plants Plan 54.0 46 0.00099 27.2 6.1 44 19-62 184-229 (369)
495 PRK06181 short chain dehydroge 54.0 97 0.0021 23.7 7.8 41 24-66 2-46 (263)
496 PRK07530 3-hydroxybutyryl-CoA 53.6 52 0.0011 26.1 6.2 42 24-66 5-48 (292)
497 cd08300 alcohol_DH_class_III c 53.2 48 0.001 27.1 6.1 43 20-62 184-228 (368)
498 COG0771 MurD UDP-N-acetylmuram 53.1 47 0.001 28.5 6.1 35 22-57 6-42 (448)
499 PF00107 ADH_zinc_N: Zinc-bind 53.0 21 0.00045 24.2 3.4 82 32-141 1-88 (130)
500 cd08254 hydroxyacyl_CoA_DH 6-h 53.0 49 0.0011 26.3 6.1 97 20-140 163-261 (338)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.96 E-value=3.8e-30 Score=190.75 Aligned_cols=125 Identities=38% Similarity=0.622 Sum_probs=89.6
Q ss_pred CcccccHHHHHHHHhhC------CCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCC
Q 038343 1 CSIWPSSLLLSEFILSF------PEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTD 73 (191)
Q Consensus 1 ~~~W~~a~~L~~~l~~~------~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~ 73 (191)
+.+||++.+|++|+.+. ...+++++|||||||+|++|+.++++ ++.+|++||+++ +++.++.|++.|+..
T Consensus 18 ~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~-- 94 (173)
T PF10294_consen 18 GKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSL-- 94 (173)
T ss_dssp -----HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----
T ss_pred EEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccc--
Confidence 36899999999999984 56778999999999999999999998 667999999987 999999999999732
Q ss_pred cccccccCCCCeeEEEeecCCCCCcC-CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 74 TSLLESYEDPNVVQCVHLPWESASES-GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 74 ~~~~~~~~~~~~i~~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
...++.+..++|++.... .....+||+|+++||+|+...+++|++++++++++++
T Consensus 95 --------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 95 --------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp -------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T
T ss_pred --------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC
Confidence 125789999999975422 2344689999999999999999999999999999995
No 2
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=1.1e-24 Score=154.85 Aligned_cols=144 Identities=26% Similarity=0.300 Sum_probs=118.7
Q ss_pred cccccHHHHHHHHhhCCCCCCCCcEEEeCCC-ccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccc
Q 038343 2 SIWPSSLLLSEFILSFPEIFSNKSCFEVGSG-VGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLES 79 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~~~~~~~~~VLElG~G-tG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~ 79 (191)
++||+...|+.++.+.+..+++++|||||.| +|+.|+++|.. ..+.|.+||.+++.++++++.+..|....-
T Consensus 9 ciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~------ 82 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL------ 82 (201)
T ss_pred EecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc------
Confidence 5899999999999999999999999999999 99999988765 346999999999999999998888854311
Q ss_pred cCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCC
Q 038343 80 YEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTN 158 (191)
Q Consensus 80 ~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (191)
..+.+....|.... ++.+...||+|+|+||++..+..++|+++|+.+|+|.|+ +++++|+|++||++|...-
T Consensus 83 ----tsc~vlrw~~~~aq-sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~--Al~fsPRRg~sL~kF~de~ 154 (201)
T KOG3201|consen 83 ----TSCCVLRWLIWGAQ-SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGR--ALLFSPRRGQSLQKFLDEV 154 (201)
T ss_pred ----ceehhhHHHHhhhH-HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccc--eeEecCcccchHHHHHHHH
Confidence 12333333333221 123345899999999999999999999999999999987 7889999999999997763
No 3
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.77 E-value=8.4e-19 Score=128.72 Aligned_cols=128 Identities=22% Similarity=0.337 Sum_probs=107.4
Q ss_pred CcccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 1 ~~~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
|..|-+++.|++|+..+++..++++|||+|+|+|+.++..++.|++.|+.+|+++.....++.|++.|+..
T Consensus 58 a~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--------- 128 (218)
T COG3897 58 AFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--------- 128 (218)
T ss_pred HHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce---------
Confidence 35799999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcc
Q 038343 81 EDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFT 150 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~ 150 (191)
+.+...|..- ++..||+|+++|++|+......++....++...| ...+++.|.|..-
T Consensus 129 -----i~~~~~d~~g------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g--~~vlvgdp~R~~l 185 (218)
T COG3897 129 -----ILFTHADLIG------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAG--AAVLVGDPGRAYL 185 (218)
T ss_pred -----eEEeeccccC------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCC--CEEEEeCCCCCCC
Confidence 4444444322 2357999999999999999999999666665555 4556777776544
No 4
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.77 E-value=4.8e-18 Score=130.82 Aligned_cols=144 Identities=25% Similarity=0.391 Sum_probs=114.9
Q ss_pred cccccHHHHHHHHhhCCC------CCC-----CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcC
Q 038343 2 SIWPSSLLLSEFILSFPE------IFS-----NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQL 70 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~~~------~~~-----~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~ 70 (191)
.+|+++..+++++..+.. ... ..+|||||+|||+.|+.++......|..+|. +..+..++.|...|+.
T Consensus 55 ~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~~~~~~ 133 (248)
T KOG2793|consen 55 YLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNRDKNNI 133 (248)
T ss_pred EEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhhhhhhh
Confidence 479999999998876543 222 3469999999999999888854459999999 7888888888777765
Q ss_pred CCCcccccccCCCCeeEEEeecCCCCCcCCCCCCC-CCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCc
Q 038343 71 STDTSLLESYEDPNVVQCVHLPWESASESGLSAFV-PEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGF 149 (191)
Q Consensus 71 ~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~-fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~ 149 (191)
.... ....+.+..++|+........... +|+|+++||+|++..++.++.+++.+|..++
T Consensus 134 ~l~~-------~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~------------- 193 (248)
T KOG2793|consen 134 ALNQ-------LGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDG------------- 193 (248)
T ss_pred hhhh-------cCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCC-------------
Confidence 4321 224789999999988765433334 9999999999999999999999999999994
Q ss_pred ccccccCCCCccccccccCCCCEEEEEecccCHHHHHHh
Q 038343 150 TLDTKCNTNDLNDLTAVTSKGPVAYIATVIRNIDTFNYF 188 (191)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~r~~~~~~~f 188 (191)
.+++++..|....++.+
T Consensus 194 ----------------------~i~l~~~lr~~~~~~~~ 210 (248)
T KOG2793|consen 194 ----------------------TIFLAYPLRRDAAWEIE 210 (248)
T ss_pred ----------------------eEEEEEecccchHHHHH
Confidence 38999999987666554
No 5
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=5.7e-18 Score=128.67 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=81.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+++++|||+|||.|.++..+|+.|+ +|+++|.++.+++.++.....++... .+.....++..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i--------------~y~~~~~edl~--- 119 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNI--------------DYRQATVEDLA--- 119 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccc--------------cchhhhHHHHH---
Confidence 5889999999999999999999997 99999999999999999988887542 22222222111
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
...++||+|+|.+|+.|.++.+.+++.+.+++||+|
T Consensus 120 ~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G 155 (243)
T COG2227 120 SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGG 155 (243)
T ss_pred hcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCc
Confidence 122689999999999999999999999999999996
No 6
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.68 E-value=1.2e-16 Score=122.52 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=78.5
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
|++|||+|||+|+++..+|++|+ .|+++|.++.+++.+++....+...... ..-++.+...+.+...
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~-------~~y~l~~~~~~~E~~~----- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGA-------IAYRLEYEDTDVEGLT----- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccc-------cceeeehhhcchhhcc-----
Confidence 57899999999999999999997 9999999999999999885444332110 0012333333333221
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+.||.|+|++++.|..++..+++.+.++|+|+|.
T Consensus 157 -~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 157 -GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGR 190 (282)
T ss_pred -cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCc
Confidence 4699999999999999999999999999999964
No 7
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.66 E-value=1.1e-15 Score=113.12 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=89.4
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
++..|.+++... ++.+|||+|||+|.+++.+++.+.. +|+++|+++.+++.+++|++.|+.. .
T Consensus 19 ~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~------------~ 82 (170)
T PF05175_consen 19 GTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE------------N 82 (170)
T ss_dssp HHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT------------T
T ss_pred HHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc------------c
Confidence 567788877665 5668999999999999999998765 7999999999999999999999865 3
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC-----hHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSC-----FPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~-----~~~ll~~l~~ll~~~g~ 137 (191)
+.+...|+.+.. ...+||+|+++..++.... ...+++...++|+|+|.
T Consensus 83 -v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~ 135 (170)
T PF05175_consen 83 -VEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGR 135 (170)
T ss_dssp -EEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred -cccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCE
Confidence 777777775543 3468999999988776553 68889999999999975
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=5.5e-15 Score=119.22 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=83.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|.++..+++.|. +|+++|.++++++.++++...+... .++.+...+.++..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~------------~~i~~~~~dae~l~--- 193 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVT------------STIEYLCTTAEKLA--- 193 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcc------------cceeEEecCHHHhh---
Confidence 4677999999999999999998876 8999999999999999876654422 24555555543321
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+++||+|++.+++++..+.+.+++.+.++|+|||...
T Consensus 194 ~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 194 DEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATV 232 (322)
T ss_pred hccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEE
Confidence 234689999999999999999999999999999998544
No 9
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.61 E-value=1.3e-14 Score=105.36 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=84.7
Q ss_pred CCCcEEEeCCCccHHHHHHH-hcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLA-HVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la-~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..+..++ ..+ ..+|+++|+++.+++.++++++.++.. ++.+...|+.+....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-------------ni~~~~~d~~~l~~~ 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-------------NIEFIQGDIEDLPQE 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-------------TEEEEESBTTCGCGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-------------ccceEEeehhccccc
Confidence 46799999999999999888 443 348999999999999999998888754 588899998874322
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
++ .+||+|++..++++..+...+++.+.++|+++|
T Consensus 70 -~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 70 -LE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGG 104 (152)
T ss_dssp -SS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEE
T ss_pred -cC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCc
Confidence 33 689999999999999999999999999999997
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=5.1e-15 Score=101.68 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=77.4
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
|+.+|||||||+|..++.+++ ....+|+++|+++.+++.+++++...... .++.+...|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~i~~~~~d~-~~~~-- 65 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS------------DRITFVQGDA-EFDP-- 65 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT------------TTEEEEESCC-HGGT--
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC------------CCeEEEECcc-ccCc--
Confidence 577999999999999999888 23348999999999999999999665543 5788888888 1111
Q ss_pred CCCCCCCEEEEcc-cccCC---CChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGAD-ILYDR---SCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d-~ly~~---~~~~~ll~~l~~ll~~~g 136 (191)
....+||+|++.. ++.+. +....+++.+.+.|+|+|
T Consensus 66 ~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 105 (112)
T PF12847_consen 66 DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGG 105 (112)
T ss_dssp TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCc
Confidence 1224699999988 33322 346788999999999996
No 11
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.58 E-value=3.2e-14 Score=109.72 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=94.1
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..|+.|+... ...+|||||||+|++++++++. ...+++++|+++.+.+.+++|++.|.+. .+
T Consensus 33 aiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~------------~r 96 (248)
T COG4123 33 AILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE------------ER 96 (248)
T ss_pred HHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch------------hc
Confidence 56677775322 3669999999999999999887 4359999999999999999999999876 68
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC------------------ChHHHHHHHHHHhccCCCCcc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRS------------------CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~------------------~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+++.+.|..+.... ....+||+|+|+..+|... +++.+++...++||++|..+.
T Consensus 97 i~v~~~Di~~~~~~-~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 97 IQVIEADIKEFLKA-LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred eeEehhhHHHhhhc-ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 89999887665432 2234799999999988543 378999999999999986443
No 12
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.58 E-value=9.8e-14 Score=103.38 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+++.. .++.+|||+|||+|..++.++..+. +|+++|+++.+++.+++|+..++. ++
T Consensus 8 ~~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--------------~~ 68 (179)
T TIGR00537 8 SLLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--------------GL 68 (179)
T ss_pred HHHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--------------ce
Confidence 3445555432 3456899999999999999998877 899999999999999999988763 35
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC---------------------hHHHHHHHHHHhccCCC
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSC---------------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~---------------------~~~ll~~l~~ll~~~g~ 137 (191)
.+...|+.+.. .++||+|+++.+++.... .+.+++.+.++|+|+|.
T Consensus 69 ~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 69 DVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred EEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 56666664432 247999999877654322 45679999999999974
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=3.3e-14 Score=107.57 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=81.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.|. +|+++|+++.+++.+++++..++.. ++.+...|+.+..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-------------~v~~~~~d~~~~~--- 91 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-------------NLHTAVVDLNNLT--- 91 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-------------cceEEecChhhCC---
Confidence 4567999999999999999999876 8999999999999999988876643 2555555654331
Q ss_pred CCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+ ..+||+|+++.++|+. .....+++.+.++|+|+|...
T Consensus 92 ~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 92 F-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred c-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 2 2479999999998754 367899999999999999743
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=2e-14 Score=112.89 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=86.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..+++.|. +|+++|+++++++.+++++...+.. .++.+...+..+... .
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~------------~~v~~~~~d~~~l~~--~ 108 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVS------------DNMQFIHCAAQDIAQ--H 108 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc------------cceEEEEcCHHHHhh--h
Confidence 456999999999999999999876 8999999999999999998877643 346666665543221 2
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
..++||+|++..++++..+...+++.+.++|+|||....++
T Consensus 109 ~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 109 LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 34689999999999999999999999999999999775543
No 15
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.1e-14 Score=113.55 Aligned_cols=110 Identities=23% Similarity=0.228 Sum_probs=79.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..-.+++.+... ++++|||+|||||++++.++++|+++|+++|++|.+++.+++|+..|+... .+
T Consensus 149 T~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~------------~~ 214 (300)
T COG2264 149 TSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL------------LV 214 (300)
T ss_pred HHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch------------hh
Confidence 3333445544332 788999999999999999999999999999999999999999999999751 11
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
......-. .....++||+|+|+= + ..-+..+...+..+++|+|.
T Consensus 215 ~~~~~~~~----~~~~~~~~DvIVANI-L--A~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 215 QAKGFLLL----EVPENGPFDVIVANI-L--AEVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred hcccccch----hhcccCcccEEEehh-h--HHHHHHHHHHHHHHcCCCce
Confidence 11111111 112335899999952 2 22356788899999999874
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=6.5e-14 Score=114.27 Aligned_cols=105 Identities=15% Similarity=0.014 Sum_probs=87.2
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++. ++ +|+++|+++.+++.++++++.++.. .++.+...|..+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~------------~~v~~~~~D~~~~--- 180 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLS------------DKVSFQVADALNQ--- 180 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEEcCcccC---
Confidence 46779999999999999988875 55 9999999999999999988877653 3577777776543
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.+.+++||+|++..++++..+...+++.+.++|+|||.....
T Consensus 181 ~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 181 PFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 245578999999999999999999999999999999875543
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=3.4e-14 Score=109.46 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=92.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+|.+|||+|||||-.++.+++. |..+|+++|+|+.||+.+++....-+.. .+++...|-++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-------------~i~fv~~dAe~LP--- 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-------------NVEFVVGDAENLP--- 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-------------ceEEEEechhhCC---
Confidence 7889999999999999977775 4459999999999999999887664432 2666777655443
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSK 147 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~ 147 (191)
+++++||+|.++-.+.+..+.+..|+.+.|+|||||...++-++.+.
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 67889999999999999999999999999999999987777666653
No 18
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=1.2e-14 Score=96.45 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=73.7
Q ss_pred EEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCC
Q 038343 27 FEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVP 106 (191)
Q Consensus 27 LElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~f 106 (191)
||+|||+|..+..+++.+..+|+++|.++++++.++++....+ +.+...+..+. .+++++|
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----------------~~~~~~d~~~l---~~~~~sf 61 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----------------VSFRQGDAEDL---PFPDNSF 61 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----------------EEEEESBTTSS---SS-TT-E
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----------------chheeehHHhC---ccccccc
Confidence 8999999999998888855599999999999999988664432 34566665544 3567899
Q ss_pred CEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 107 EIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 107 DvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
|+|++..++++.++...+++.+.++|||+|.
T Consensus 62 D~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 62 DVVFSNSVLHHLEDPEAALREIYRVLKPGGR 92 (95)
T ss_dssp EEEEEESHGGGSSHHHHHHHHHHHHEEEEEE
T ss_pred cccccccceeeccCHHHHHHHHHHHcCcCeE
Confidence 9999999999999999999999999999973
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.56 E-value=5.5e-14 Score=106.18 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=78.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.|. +|+++|+++.+++.+++++..+++. +.....+.....
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--------------v~~~~~d~~~~~--- 90 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--------------LRTDAYDINAAA--- 90 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--------------ceeEeccchhcc---
Confidence 3567999999999999999999876 8999999999999999888776643 333444433211
Q ss_pred CCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+ ..+||+|+++.++++. .+...+++.+.++|+|||...
T Consensus 91 ~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 91 L-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred c-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 1 2479999999988765 467889999999999998744
No 20
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.55 E-value=2.8e-14 Score=113.55 Aligned_cols=107 Identities=26% Similarity=0.374 Sum_probs=76.7
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
.+..-.++|.+. ..++++|||+|||||++++.++++|+++|+++|+++.+++.+++|++.|+.. .+
T Consensus 147 TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~------------~~ 212 (295)
T PF06325_consen 147 TTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE------------DR 212 (295)
T ss_dssp HHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T------------TC
T ss_pred HHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC------------ee
Confidence 344445555554 3467899999999999999999999999999999999999999999999976 33
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
+.+. . . ......+||+|+++ .+. ..+-.+...+.++|+|+|
T Consensus 213 ~~v~-~--~----~~~~~~~~dlvvAN-I~~--~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 213 IEVS-L--S----EDLVEGKFDLVVAN-ILA--DVLLELAPDIASLLKPGG 253 (295)
T ss_dssp EEES-C--T----SCTCCS-EEEEEEE-S-H--HHHHHHHHHCHHHEEEEE
T ss_pred EEEE-E--e----cccccccCCEEEEC-CCH--HHHHHHHHHHHHhhCCCC
Confidence 4332 1 1 11223689999985 211 124567777888899986
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.54 E-value=1.1e-13 Score=112.09 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=81.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++++|||+|||+|..+..++..|+..|+++|.++.++...+......+.. .++.+...+..+..
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~------------~~i~~~~~d~e~lp-- 185 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND------------QRAHLLPLGIEQLP-- 185 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC------------CCeEEEeCCHHHCC--
Confidence 3578899999999999999888888878999999988876544332221111 34677777765443
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. .++||+|++..++||..+...+++.+++.|+|||...
T Consensus 186 -~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 186 -A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred -C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEE
Confidence 1 4679999999999999999999999999999998654
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.54 E-value=1.4e-13 Score=110.63 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=80.2
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...++++|||+|||+|.....++..|+..|+++|.++.++..++......... .++.+..++.++...
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~------------~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND------------KRAILEPLGIEQLHE 185 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC------------CCeEEEECCHHHCCC
Confidence 44678899999999999988888888878999999999887654322211111 235556665544321
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+||+|++..++||..+...+++.+++.|+|||...
T Consensus 186 ----~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 186 ----LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred ----CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEE
Confidence 2479999999999999999999999999999998654
No 23
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.51 E-value=7.5e-14 Score=108.08 Aligned_cols=115 Identities=17% Similarity=0.038 Sum_probs=83.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||||..+..+++. +. .+|+++|+++.||+.+++++...+.. ++.+...|-++.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-------------~i~~v~~da~~lp- 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-------------NIEFVQGDAEDLP- 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---------------SEEEEE-BTTB---
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-------------CeeEEEcCHHHhc-
Confidence 36779999999999999987764 33 38999999999999999998876532 5777777765443
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCccc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTL 151 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~ 151 (191)
+++++||+|+++-.+.+.++.+..++.+.++|||||...++-++.++.+.+
T Consensus 112 --~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~ 162 (233)
T PF01209_consen 112 --FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLL 162 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHH
T ss_pred --CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchh
Confidence 466899999999999999999999999999999999888777766654433
No 24
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.50 E-value=6.1e-13 Score=104.83 Aligned_cols=111 Identities=15% Similarity=0.002 Sum_probs=84.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..+..+++. +. .+|+++|++++|++.++++....... ...++.+...|..+.+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~----------~~~~i~~~~~d~~~lp- 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS----------CYKNIEWIEGDATDLP- 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc----------cCCCeEEEEcccccCC-
Confidence 46779999999999988877764 43 48999999999999998765321100 0124666777655432
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccccc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKE 144 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~ 144 (191)
+++++||+|+++.++++..+...+++.+.++|||||....+...
T Consensus 141 --~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 141 --FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred --CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 45578999999999999999999999999999999976654433
No 25
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=4e-13 Score=107.26 Aligned_cols=99 Identities=20% Similarity=0.207 Sum_probs=80.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.+++.|. +|+++|.++.+++.+++++..+++. +.+...|..... +
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~--------------v~~~~~D~~~~~---~ 181 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLN--------------IRTGLYDINSAS---I 181 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCc--------------eEEEEechhccc---c
Confidence 456999999999999999999886 8999999999999999998877642 445555544321 1
Q ss_pred CCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+++||+|++..++++. +....+++.+.++|+|||...
T Consensus 182 -~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 182 -QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred -cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 4589999999988864 467889999999999998643
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.48 E-value=4.4e-13 Score=106.04 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=83.7
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
..+.+.......+|.+|||||||-|.+++.+++. |+ +|+++.+|++..+.+++.++..++. ..+.+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~------------~~v~v 116 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLE------------DRVEV 116 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS------------STEEE
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEE
Confidence 3445566667779999999999999999988887 77 8999999999999999999888765 46778
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCC
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~ 137 (191)
...||.+.. .+||-|++-+++.+. ...+.+++.+.++|+|||.
T Consensus 117 ~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 117 RLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp EES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred EEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 888876543 389999999999987 5789999999999999975
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.48 E-value=8.8e-13 Score=98.43 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=77.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..++.++..+. .+|+++|.++.+++.++++++.++.. ++.+...++.+..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-------------~i~~i~~d~~~~~-- 105 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-------------NVEIVNGRAEDFQ-- 105 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-------------CeEEEecchhhcc--
Confidence 3578999999999999998776543 48999999999999999999887643 4777887776531
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+|++.. ...++.+++.+.++|+|+|...
T Consensus 106 --~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 106 --HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred --ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEE
Confidence 235899998854 2457788999999999998644
No 28
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=7.1e-13 Score=104.08 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=94.0
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
+.+....+.-+|++|||||||-|.+++.+|+. |+ +|+++++|++..+.+++.+...++. .++++.-
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~------------~~v~v~l 128 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLE------------DNVEVRL 128 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCC------------cccEEEe
Confidence 34455566779999999999999999988886 55 9999999999999999999988876 5788999
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~ 139 (191)
.||.+.. ++||-|++.+++.+... .+.+++.+.++|+|+|...
T Consensus 129 ~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 129 QDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEE
Confidence 9998765 35999999999998765 9999999999999998644
No 29
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.48 E-value=4.8e-13 Score=105.54 Aligned_cols=109 Identities=16% Similarity=0.041 Sum_probs=82.1
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+.......++.+|||+|||+|..+..+++....+|+++|+++.+++.++++.... .++.+...|.
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~i~~~~~D~ 108 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---------------NKIEFEANDI 108 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---------------CceEEEECCc
Confidence 3333444577899999999999888776542238999999999999998765431 2466666665
Q ss_pred CCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 94 ESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
... .+++++||+|++.+++++.. +...+++.+.++|+|||....
T Consensus 109 ~~~---~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 109 LKK---DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred ccC---CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 432 23456899999999887754 788999999999999987553
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=2.7e-12 Score=99.19 Aligned_cols=103 Identities=17% Similarity=0.055 Sum_probs=82.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.+++++..++.. ++.+...|..+..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------------~v~~~~~d~~~~~- 109 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-------------NVELVHGNAMELP- 109 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-------------ceEEEEechhcCC-
Confidence 46789999999999998877764 32 48999999999999999998765532 4566666654322
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+++||+|+++.++.+.++...+++.+.++|+|||...
T Consensus 110 --~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 110 --FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred --CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEE
Confidence 344689999999999888899999999999999998543
No 31
>PRK14967 putative methyltransferase; Provisional
Probab=99.47 E-value=3.9e-12 Score=98.04 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=84.5
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|++++.... ..++.+|||+|||+|..++.+++.+..+|+++|+++.+++.+++|+..++. ++
T Consensus 22 s~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--------------~~ 86 (223)
T PRK14967 22 TQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--------------DV 86 (223)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--------------ee
Confidence 566777765432 345679999999999999988888766999999999999999999988763 25
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC---------------------hHHHHHHHHHHhccCCCCc
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSC---------------------FPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~---------------------~~~ll~~l~~ll~~~g~~~ 139 (191)
.+...|+.+. +...+||+|+++..++.... .+.+++.+.++|+++|...
T Consensus 87 ~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 87 DVRRGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred EEEECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 5666666442 23458999999754332211 4567788899999998643
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=8.4e-13 Score=112.31 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=82.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++....+|+++|+++.+++.+++|..... .++.+...|+....
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--------------~~v~~~~~d~~~~~--- 327 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--------------CSVEFEVADCTKKT--- 327 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--------------CceEEEEcCcccCC---
Confidence 4677999999999998887776423389999999999999988764222 34677777776532
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+++++||+|++.+++++..+.+.+++.+.++|+|||...
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEE
Confidence 344689999999999999999999999999999998644
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.47 E-value=7.3e-15 Score=98.95 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=58.4
Q ss_pred EEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCC
Q 038343 27 FEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFV 105 (191)
Q Consensus 27 LElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~ 105 (191)
||+|||+|.....+... ...+|+++|+|+.+++.+++.+........ ..+.+...+..+. ....+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~----------~~~~~~~~~~~~~----~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNF----------ERLRFDVLDLFDY----DPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---E----------EEEE--SSS---C----CC---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcce----------eEEEeecCChhhc----ccccc
Confidence 79999999888755544 334999999999999888777766553210 1122222222111 11258
Q ss_pred CCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 106 PEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 106 fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
||+|+++.++++.++...+++.+.++|+|||
T Consensus 67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-
T ss_pred cceehhhhhHhhhhhHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999997
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.47 E-value=1.3e-12 Score=97.94 Aligned_cols=99 Identities=26% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++. ...+|+++|.++.+++.++++++.++.. ++++...+..+...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-------------~i~~~~~d~~~~~~-- 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-------------NVTVVHGRAEEFGQ-- 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-------------CEEEEeccHhhCCC--
Confidence 3789999999999999987753 3359999999999999999999998754 36777777654321
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..+||+|++.. ...++.+++.+.++|+|+|....+
T Consensus 110 --~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 --EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred --CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEE
Confidence 45899999864 246789999999999999875544
No 35
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.46 E-value=2.2e-12 Score=103.04 Aligned_cols=111 Identities=24% Similarity=0.327 Sum_probs=80.0
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+.+....+++.... .++.+|||+|||+|.+++.+++.|+.+|+++|+++.+++.+++|+..|+.. .
T Consensus 144 ~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~------------~ 209 (288)
T TIGR00406 144 PTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS------------D 209 (288)
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC------------c
Confidence 33444444444332 367899999999999999999998889999999999999999999998764 2
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+.+...+.. ....++||+|+++-+ ......++..+.++|+|+|.
T Consensus 210 ~~~~~~~~~~-----~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 210 RLQVKLIYLE-----QPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred ceEEEecccc-----cccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcE
Confidence 2333332211 112358999998532 23456788999999999973
No 36
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.45 E-value=4.4e-13 Score=100.23 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=78.5
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..+..++||||||.|-.++++|+.|. .|+++|+++.+++.+++.++..++. ++....|..+..
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--------------i~~~~~Dl~~~~-- 90 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--------------IRTRVADLNDFD-- 90 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--------------EEEEE-BGCCBS--
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--------------eEEEEecchhcc--
Confidence 44677999999999999999999998 8999999999999998888777754 666777765442
Q ss_pred CCCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+ +..||+|++.-+++ ..+..+.+++.++..++|||....
T Consensus 91 -~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 91 -F-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp ---TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -c-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 2 25799999876665 456778899999999999986443
No 37
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=3.5e-12 Score=95.27 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=84.8
Q ss_pred cccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 4 W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
|+.+..|.+++.. .++++|||+|||+|..+..++..+. +|+++|.++.+++.+++|+..++...
T Consensus 9 ~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~----------- 72 (188)
T PRK14968 9 AEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRN----------- 72 (188)
T ss_pred chhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCC-----------
Confidence 4455666666543 3677999999999999998888864 99999999999999999998876531
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC---------------------ChHHHHHHHHHHhccCCCCc
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRS---------------------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~---------------------~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+.+...|+.+.. ...+||+|+++..++... ....+++.+.++|+|+|...
T Consensus 73 ~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 73 NGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred cceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 11556666654432 234799999876654311 14567899999999998544
No 38
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.45 E-value=1.1e-12 Score=107.84 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=78.4
Q ss_pred CCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.+|||||||+|.+++.+++.++ .+|+++|.++.+++.+++|++.|+.... .++.+...|.... .
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~----------~~v~~~~~D~l~~----~ 294 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEAL----------DRCEFMINNALSG----V 294 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccC----------ceEEEEEcccccc----C
Confidence 45899999999999998888653 4999999999999999999998874310 2355554443221 2
Q ss_pred CCCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDRS-----CFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
...+||+|+++.+++... ....+++...+.|+|+|....+
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 335799999987776432 3467788899999999976654
No 39
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.44 E-value=1.4e-12 Score=102.12 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..++..+. +|+++|+++.+++.++++... ..+...|+... .+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~------------------~~~~~~d~~~~---~~ 99 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA------------------DHYLAGDIESL---PL 99 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCC------------------CCEEEcCcccC---cC
Confidence 467899999999998888888775 899999999999988765321 12344444432 13
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
.+++||+|+++.++++..+...+++.+.++|+|+|......
T Consensus 100 ~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 45689999999999999999999999999999998765443
No 40
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.43 E-value=4e-12 Score=99.60 Aligned_cols=105 Identities=26% Similarity=0.324 Sum_probs=77.3
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
+.+..+.+++... ..++.+|||+|||+|.+++.+++.|+.+|+++|+++.+++.+++|+..|+.. .
T Consensus 104 ~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~------------~ 169 (250)
T PRK00517 104 PTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE------------L 169 (250)
T ss_pred HHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC------------c
Confidence 3444555555443 2367899999999999999989988878999999999999999999988753 1
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+.+... +.+||+|+++-. ......+++.+.++|+|+|.
T Consensus 170 ~~~~~~~-----------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 170 NVYLPQG-----------DLKADVIVANIL---ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred eEEEccC-----------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcE
Confidence 2222111 126999998522 23356788899999999974
No 41
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=3.1e-12 Score=100.50 Aligned_cols=98 Identities=21% Similarity=0.150 Sum_probs=76.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.. ++.+...|.....
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------------------~~~~~~~d~~~~~-- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------------------DCQFVEADIASWQ-- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------------------CCeEEECchhccC--
Confidence 46779999999999998877765 33589999999999999886531 2334444433221
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...+||+|+++.++++..+...+++.+.++|+|||....
T Consensus 90 --~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 90 --PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred --CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 234899999999999999999999999999999986543
No 42
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.3e-12 Score=100.05 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=79.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+.+|||+|||.|.+|+.+++..+ .+++++|.|..+++.+++|++.|+.+. ..+..-+..+.
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-------------~~v~~s~~~~~---- 220 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-------------TEVWASNLYEP---- 220 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-------------cEEEEeccccc----
Confidence 344999999999999999988753 599999999999999999999998762 12233332222
Q ss_pred CCCCCCCEEEEcccccCCCCh-----HHHHHHHHHHhccCCCCcccc
Q 038343 101 LSAFVPEIILGADILYDRSCF-----PDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~-----~~ll~~l~~ll~~~g~~~~~~ 142 (191)
.. ++||+||++..|+..... ..+++.-.+.|++||....+.
T Consensus 221 v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 221 VE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 22 389999999999965443 368899999999998766544
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.42 E-value=2e-12 Score=99.50 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=82.5
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
++|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...+.. .++.+...|..... .
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~------------~~i~~~~~d~~~~~---~- 64 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ------------GRIRIFYRDSAKDP---F- 64 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC------------cceEEEecccccCC---C-
Confidence 479999999999888777653 348999999999999999998877654 45677777764432 1
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.++||+|++..++++..+.+.+++.+.++|+|+|....
T Consensus 65 ~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 65 PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEE
Confidence 24799999999999999999999999999999987553
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.42 E-value=3e-12 Score=101.38 Aligned_cols=104 Identities=16% Similarity=0.106 Sum_probs=83.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-cCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-VKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.+++ .+. .+|+++|.++.+++.++++...++.. ++.+...++.+..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-------------~v~~~~~d~~~l~- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-------------NVEFRLGEIEALP- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-------------CEEEEEcchhhCC-
Confidence 4678999999999988876555 344 37999999999999999998776642 4566666655432
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|++..++++..+...+++.+.++|+|||....
T Consensus 142 --~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 --VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred --CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEE
Confidence 3446899999999999888999999999999999987554
No 45
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.41 E-value=6.8e-13 Score=105.89 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=96.5
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+.++.+.++++.|||+|||||.++++.|+.|+++|+++|.+ .+.+.+++.+..|++. +.+++.....
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~------------~ii~vi~gkv 118 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE------------DVITVIKGKV 118 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc------------ceEEEeecce
Confidence 44567789999999999999999999999999999999995 5669999999999977 4567776665
Q ss_pred CCCCcCCCCCCCCCEEEE---cccccCCCChHHHHHHHHHHhccCCCCc----cccccCCCCccc
Q 038343 94 ESASESGLSAFVPEIILG---ADILYDRSCFPDLVRILAILLNRRKSVS----SSRKESSKGFTL 151 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~---~d~ly~~~~~~~ll~~l~~ll~~~g~~~----~~~~~~~~~~~~ 151 (191)
++. .++..+.|+|++ ..++++..+++.++-.-.+.|+|+|-.. .++.++.+..+.
T Consensus 119 Edi---~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~ 180 (346)
T KOG1499|consen 119 EDI---ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSY 180 (346)
T ss_pred EEE---ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchh
Confidence 544 244568999997 4466678899999999999999997533 444455444443
No 46
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.41 E-value=3e-13 Score=98.37 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=70.8
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.|. +|+++|+++.+++. .+. .....+-.. .
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~~~-----------------~~~~~~~~~---~ 72 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------RNV-----------------VFDNFDAQD---P 72 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------TTS-----------------EEEEEECHT---H
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------hhh-----------------hhhhhhhhh---h
Confidence 45678999999999999998899988 99999999998877 110 111111000 0
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...+++||+|++++++++..+...+++.+.++|+|+|.
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEE
T ss_pred hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCE
Confidence 12346899999999999999999999999999999974
No 47
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=2.5e-12 Score=101.02 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=75.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.++++ + +.+...|..+..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~----------------~~~~~~d~~~~~-- 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G----------------VDARTGDVRDWK-- 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C----------------CcEEEcChhhCC--
Confidence 467799999999999998887762 23899999999999888642 1 234444443221
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..++||+|+++.++++..+...+++.+.++|+|||....
T Consensus 86 --~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 86 --PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred --CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence 235899999999999999999999999999999987554
No 48
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=3.8e-12 Score=98.52 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=87.4
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+|+....+..++.+|||+|||+|..+..+++.+. +|+++|.++.+++.+++++..++. .+.+..
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--------------~~~~~~ 101 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--------------KIDYRQ 101 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--------------ceEEEe
Confidence 34555555456788999999999999998888876 899999999999999988876553 244455
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.++.+... ...++||+|+++.++++..+...+++.+.++|+|+|...
T Consensus 102 ~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 102 TTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred cCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEE
Confidence 55543321 123589999999999999999999999999999998643
No 49
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.41 E-value=8.7e-12 Score=95.74 Aligned_cols=97 Identities=22% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+|||+|||+|..+..+++.+. +|+++|+++.++..+++++..+... .++.+...|+.+..
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~------------~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVA------------GNVEFEVNDLLSLC-- 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEECChhhCC--
Confidence 34678999999999999998888866 8999999999999999988766532 24666776665432
Q ss_pred CCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccC
Q 038343 100 GLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRR 135 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~ 135 (191)
.+||+|++.+++++.+ ....+++.+.++++++
T Consensus 118 ----~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 118 ----GEFDIVVCMDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred ----CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 5799999999987643 3566677777776644
No 50
>PRK08317 hypothetical protein; Provisional
Probab=99.40 E-value=6.8e-12 Score=96.85 Aligned_cols=119 Identities=14% Similarity=0.043 Sum_probs=88.2
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYED 82 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 82 (191)
|-...+-+.+.......++.+|||+|||+|..+..++... ..+|+++|.++.+++.++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~------------- 68 (241)
T PRK08317 2 PDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG------------- 68 (241)
T ss_pred chHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-------------
Confidence 3334444455555555678899999999999888776642 3489999999999999987732221
Q ss_pred CCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 83 PNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 83 ~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.++.+...|..... +..++||+|++..++.+..+...+++.+.++|+|+|....
T Consensus 69 -~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 69 -PNVEFVRGDADGLP---FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred -CceEEEecccccCC---CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 24566666654322 3446899999999999999999999999999999986543
No 51
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.39 E-value=6.4e-12 Score=99.08 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=82.2
Q ss_pred cccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 4 WPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 4 W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
|.+-..-.. +..+...+.|++|||+|||.|..+.-++..|++.|+++|.++..+-+.+..-..-+..
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~------------ 164 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD------------ 164 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC------------
Confidence 444443333 2233335789999999999999999999999999999998765543322211111111
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+....+..++... .+.||+|++..|+||..++-..|+.++..|++||...
T Consensus 165 ~~~~~lplgvE~Lp~----~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 165 PPVFELPLGVEDLPN----LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELV 216 (315)
T ss_pred ccEEEcCcchhhccc----cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEE
Confidence 123333344444322 3579999999999999999999999999999998533
No 52
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.39 E-value=1.8e-11 Score=94.63 Aligned_cols=102 Identities=20% Similarity=0.099 Sum_probs=82.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..+..++..+. .+|+++|+++.+++.+++++..++.. ..+.+...++.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~-- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS------------GNVEFVQGDAEALP-- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc------------cCeEEEecccccCC--
Confidence 567999999999999998877653 59999999999999999987664432 34666666665432
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
...+.||+|+++.++++..+...+++.+.++|+|+|..
T Consensus 117 -~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 117 -FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRL 154 (239)
T ss_pred -CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEE
Confidence 23468999999999999999999999999999999753
No 53
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.39 E-value=1e-12 Score=97.54 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=69.1
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
.++||+|||.|.++..++... .+++++|+++.+++.+++.+... .++.+...+..+. .+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---------------~~V~~~~~dvp~~----~P~ 104 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---------------PHVEWIQADVPEF----WPE 104 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----------------SSEEEEES-TTT-------S
T ss_pred ceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---------------CCeEEEECcCCCC----CCC
Confidence 479999999999999998884 59999999999999998766432 3578888876443 355
Q ss_pred CCCCEEEEcccccCCCCh---HHHHHHHHHHhccCC
Q 038343 104 FVPEIILGADILYDRSCF---PDLVRILAILLNRRK 136 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~---~~ll~~l~~ll~~~g 136 (191)
++||+|+.++++|+..+. ..++..+...|+|+|
T Consensus 105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG 140 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGG 140 (201)
T ss_dssp S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 789999999999998764 457788888999997
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.39 E-value=1.2e-11 Score=100.84 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|||+|||+|.+++.+++.++ .+|+++|+++.+++.+++|++.|++. ..+...|....
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--------------~~~~~~D~~~~----- 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--------------GEVFASNVFSD----- 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--------------CEEEEcccccc-----
Confidence 34799999999999998888754 48999999999999999999998754 22333332211
Q ss_pred CCCCCCEEEEcccccCC-----CChHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDR-----SCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~-----~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..++||+|+++.++++. ...+.+++...+.|+|||....+
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 13579999998887753 34578899999999999876544
No 55
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.39 E-value=4.6e-12 Score=95.20 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
..++.+||||+||+|.+|+.+++.|+++|+++|.++.+++.+++|++.++.. .++.+...|..+....
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~------------~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG------------EQAEVVRNSALRALKF 114 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc------------ccEEEEehhHHHHHHH
Confidence 3578899999999999999999999989999999999999999999999854 2456666554322111
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHH--HhccC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAI--LLNRR 135 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~--ll~~~ 135 (191)
.....+++.|+..|..|.....+.+++.+.. +++++
T Consensus 115 ~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~ 152 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDT 152 (189)
T ss_pred hhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCC
Confidence 1112234455556888887777777776654 45444
No 56
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.37 E-value=1.3e-11 Score=104.24 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=75.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+.+.......++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++|++.|+.. ++
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-------------~v 347 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-------------NV 347 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-------------ce
Confidence 34555555554444467799999999999999998886 49999999999999999999988753 47
Q ss_pred EEEeecCCCCCcC-CCCCCCCCEEEEcccccCCCChHHHHHHHHH
Q 038343 87 QCVHLPWESASES-GLSAFVPEIILGADILYDRSCFPDLVRILAI 130 (191)
Q Consensus 87 ~~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ 130 (191)
.+...|+.+.... .+.+.+||+|++ |.-|.. ....++.+.+
T Consensus 348 ~~~~~d~~~~l~~~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~ 389 (443)
T PRK13168 348 TFYHANLEEDFTDQPWALGGFDKVLL-DPPRAG--AAEVMQALAK 389 (443)
T ss_pred EEEEeChHHhhhhhhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh
Confidence 7888887543211 123357999987 444432 2344454444
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.37 E-value=2.9e-11 Score=84.10 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=76.0
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
+.......++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++++.++.. ++.+...+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------------~~~~~~~~ 77 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-------------NIVIVEGD 77 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-------------ceEEEecc
Confidence 333333345679999999999999987775 3358999999999999999998877643 34455444
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...... ....+||+|++... ......+++.+.++|+|+|.
T Consensus 78 ~~~~~~--~~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 78 APEALE--DSLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGR 117 (124)
T ss_pred ccccCh--hhcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCE
Confidence 332111 11247999998543 23457899999999999974
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.37 E-value=4.7e-11 Score=89.54 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=74.9
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..++.+|||+|||+|.+++.+++.+. .+|+++|.++.+++.+++|++.++.. ++.+...+....
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-------------~i~~~~~d~~~~-- 93 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-------------NIDIIPGEAPIE-- 93 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------CeEEEecCchhh--
Confidence 34677999999999999998877643 48999999999999999999887643 355555543211
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
+ ..+||+|++.... ..+..+++.+.++|+|+|..
T Consensus 94 --~-~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~l 127 (187)
T PRK08287 94 --L-PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRL 127 (187)
T ss_pred --c-CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEE
Confidence 1 2479999986543 34678999999999999753
No 59
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=8.5e-12 Score=91.79 Aligned_cols=80 Identities=21% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 17 FPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
......++.|+|||||||.+++.++.+|+++|+++|+++++++.+++|+.... ..+.+...|..+.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--------------g~v~f~~~dv~~~ 105 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--------------GDVEFVVADVSDF 105 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--------------CceEEEEcchhhc
Confidence 34456888999999999999999999999999999999999999999998844 3577777776554
Q ss_pred CcCCCCCCCCCEEEEccccc
Q 038343 97 SESGLSAFVPEIILGADILY 116 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly 116 (191)
. .++|.++.+..+=
T Consensus 106 ~------~~~dtvimNPPFG 119 (198)
T COG2263 106 R------GKFDTVIMNPPFG 119 (198)
T ss_pred C------CccceEEECCCCc
Confidence 3 5788888866654
No 60
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.36 E-value=7.4e-13 Score=91.58 Aligned_cols=101 Identities=21% Similarity=0.167 Sum_probs=78.7
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
|.+|||+|||+|.+.+.+++.+..+++++|+++.+++.++.|+..++.. .++++...|+.+.. ..+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~------------~~~~~~~~D~~~~~-~~~~ 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD------------DRVEVIVGDARDLP-EPLP 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT------------TTEEEEESHHHHHH-HTCT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC------------ceEEEEECchhhch-hhcc
Confidence 4589999999999999888887569999999999999999999988764 45778888775442 2245
Q ss_pred CCCCCEEEEcccccCCC--------ChHHHHHHHHHHhccCC
Q 038343 103 AFVPEIILGADILYDRS--------CFPDLVRILAILLNRRK 136 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~--------~~~~ll~~l~~ll~~~g 136 (191)
..+||+|+++..+.... ....+++.+.++|+|+|
T Consensus 68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG 109 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGG 109 (117)
T ss_dssp TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEE
T ss_pred CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCe
Confidence 57899999976665321 34678999999999996
No 61
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.5e-11 Score=95.59 Aligned_cols=89 Identities=25% Similarity=0.213 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..|.+.+......... +|||||||||.+++.+++.... +|+++|+|+.+++.+++|+..|++. +
T Consensus 96 Te~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~-------------~ 161 (280)
T COG2890 96 TELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV-------------R 161 (280)
T ss_pred hHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc-------------c
Confidence 45555554321111112 7999999999999988887653 9999999999999999999999863 2
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEccc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADI 114 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ 114 (191)
+.+...||.+... ++||+|+++..
T Consensus 162 ~~~~~~dlf~~~~-----~~fDlIVsNPP 185 (280)
T COG2890 162 VLVVQSDLFEPLR-----GKFDLIVSNPP 185 (280)
T ss_pred EEEEeeecccccC-----CceeEEEeCCC
Confidence 3344448876532 38999999654
No 62
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=1.3e-11 Score=93.23 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||||||+|.+++.++..++.+|+++|.++.+++.+++|++.++.. ++.+...|+.+....
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-------------~v~~~~~D~~~~l~~- 117 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-------------NARVVNTNALSFLAQ- 117 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------cEEEEEchHHHHHhh-
Confidence 356799999999999999655556679999999999999999999998753 366666665432211
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHH--hccC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAIL--LNRR 135 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l--l~~~ 135 (191)
...+||+|++ |.-|.....+.+++.+... ++++
T Consensus 118 -~~~~fDlV~~-DPPy~~g~~~~~l~~l~~~~~l~~~ 152 (199)
T PRK10909 118 -PGTPHNVVFV-DPPFRKGLLEETINLLEDNGWLADE 152 (199)
T ss_pred -cCCCceEEEE-CCCCCCChHHHHHHHHHHCCCcCCC
Confidence 1246999997 4447666666666666552 4554
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.35 E-value=1.5e-11 Score=94.46 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=81.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
..+.+|||+|||+|..+..+++.+. +|+++|.++.+++.+++++..++.. ++.+...+..+....
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-------------~~~~~~~d~~~~~~~- 108 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-------------KIEYRCTSVEDLAEK- 108 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-------------ceEEEeCCHHHhhcC-
Confidence 4577999999999999988888776 7999999999999999888776531 244455544332211
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
..++||+|+++.++++..+...+++.+.++|+++|..
T Consensus 109 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l 145 (224)
T TIGR01983 109 -GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL 145 (224)
T ss_pred -CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEE
Confidence 1358999999999999999999999999999999753
No 64
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.35 E-value=8.1e-13 Score=89.31 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=68.9
Q ss_pred EEEeCCCccHHHHHHHhc---CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 26 CFEVGSGVGLVGICLAHV---KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 26 VLElG~GtG~~~~~la~~---g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
|||+|||+|.....+.+. +. .+++++|+++++++.++++....+. ++++...|..+.. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--------------~~~~~~~D~~~l~---~ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--------------KVRFVQADARDLP---F 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--------------TSEEEESCTTCHH---H
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--------------ceEEEECCHhHCc---c
Confidence 799999999888877765 32 5999999999999999988876543 3566777775532 2
Q ss_pred CCCCCCEEEEccc-ccCC--CChHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADI-LYDR--SCFPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~-ly~~--~~~~~ll~~l~~ll~~~g 136 (191)
..++||+|+++.. +++. +....+++.+.++|+|+|
T Consensus 64 ~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3458999999544 5543 457889999999999985
No 65
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.35 E-value=8.5e-12 Score=97.58 Aligned_cols=101 Identities=10% Similarity=0.102 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV---KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~---g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++.+|||+|||+|..+..+++. ...+|+++|.++.|++.+++++..++.. .++.+...+..+..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~------------~~v~~~~~d~~~~~- 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP------------TPVDVIEGDIRDIA- 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC------------CCeEEEeCChhhCC-
Confidence 5679999999999988877652 2248999999999999999998876643 35677776655432
Q ss_pred CCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 99 SGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+|+|+++-++++.+ ....+++.+.+.|+|||...
T Consensus 123 ----~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 123 ----IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV 161 (247)
T ss_pred ----CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 23599999988887654 34689999999999998644
No 66
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=1.1e-11 Score=95.80 Aligned_cols=98 Identities=18% Similarity=0.120 Sum_probs=77.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+.+|||+|||+|..+..+++.+. .+|+++|.++.+++.++.+... ++.+...|..+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----------------~~~~~~~d~~~~~--- 93 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----------------NVQFICGDAEKLP--- 93 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----------------CCeEEecchhhCC---
Confidence 457899999999999888887654 3789999999999888765431 2445555554332
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+++||+|+++.++++..+...+++.+.++|+|+|...
T Consensus 94 ~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEE
Confidence 244689999999999999999999999999999998544
No 67
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=9.9e-12 Score=92.48 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=75.4
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE-EEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ-CVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~-~~~ldw~~~~~~~~~~ 103 (191)
.|||+|||||..--+.-.....+||++|.++.|-+.+.+.++.+... ++. +...+-++.. ++.+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-------------~~~~fvva~ge~l~--~l~d 143 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-------------QVERFVVADGENLP--QLAD 143 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-------------ceEEEEeechhcCc--cccc
Confidence 68999999995544333222349999999999999999988887543 233 3333333222 3567
Q ss_pred CCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 104 FVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
++||+|+++=++....+....|+.++++|+|+|.
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~ 177 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGR 177 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcE
Confidence 8999999999999999999999999999999974
No 68
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.34 E-value=1.6e-11 Score=99.71 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=78.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++. +..+|+++|.++.+++.++++...+ ++.+...|..+. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----------------~i~~i~gD~e~l---p 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----------------ECKIIEGDAEDL---P 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----------------CCeEEeccHHhC---C
Confidence 5679999999999988866653 4458999999999999998875422 244555555432 2
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++||+|+++.++++..+.+.+++.+.++|+|||....
T Consensus 174 ~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 3456899999999999988999999999999999987543
No 69
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.33 E-value=2.3e-11 Score=98.03 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..++.+++.|. +|+++|+++.|++.++++......... ....+.+...|+.+.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~--------~~~~~~f~~~Dl~~l---- 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALP--------PEVLPKFEANDLESL---- 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccc--------cccceEEEEcchhhc----
Confidence 3577999999999999999999876 899999999999999998765421100 002355666665432
Q ss_pred CCCCCCCEEEEcccccCCCC--hHHHHHHHHH
Q 038343 101 LSAFVPEIILGADILYDRSC--FPDLVRILAI 130 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ 130 (191)
+++||+|++.+++++.++ ...+++.+.+
T Consensus 210 --~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~ 239 (315)
T PLN02585 210 --SGKYDTVTCLDVLIHYPQDKADGMIAHLAS 239 (315)
T ss_pred --CCCcCEEEEcCEEEecCHHHHHHHHHHHHh
Confidence 357999999999876544 2334444444
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.33 E-value=4.2e-11 Score=95.49 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=75.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|..++.+++.. ..+|+++|+++.+++.+++|++.++.. .++.+...|+.+..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~------------~~i~~~~~D~~~~~--- 185 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE------------DRVTLIQSDLFAAL--- 185 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhhcc---
Confidence 34689999999999999888753 248999999999999999999988754 35777887764332
Q ss_pred CCCCCCCEEEEcccccCCC-------------------------ChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRS-------------------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~-------------------------~~~~ll~~l~~ll~~~g~ 137 (191)
+..+||+|+++....... ....+++.+.++|+|+|.
T Consensus 186 -~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 186 -PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred -CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 234799999864322111 135678888889999975
No 71
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.32 E-value=8e-11 Score=97.36 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=79.0
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..|.+.+..... ++.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.+++|++.++. +
T Consensus 238 TE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--------------r 301 (423)
T PRK14966 238 TEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--------------R 301 (423)
T ss_pred HHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------c
Confidence 4566666654322 4568999999999999987764 345899999999999999999987762 4
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC-------------------------ChHHHHHHHHHHhccCCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDRS-------------------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~-------------------------~~~~ll~~l~~ll~~~g~ 137 (191)
+.+...||.+... ....+||+|+++....... .+..+++.+.+.|+|+|.
T Consensus 302 V~fi~gDl~e~~l--~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 302 VEFAHGSWFDTDM--PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred EEEEEcchhcccc--ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 6778888754321 1124799999966432111 133566666778888874
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=4.8e-11 Score=90.82 Aligned_cols=107 Identities=17% Similarity=0.074 Sum_probs=76.7
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
.++.+.....++.+|||+|||+|..+..+++. + ..+|+++|.++++++.+++|+..++.. .++.+.
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~------------~~v~~~ 129 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW------------GVVEVY 129 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------CcEEEE
Confidence 33434333446779999999999998877764 2 248999999999999999999887753 346666
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..|..+... ...+||+|++...+.+ +.+.+.+.|+|||...
T Consensus 130 ~~d~~~~~~---~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 130 HGDGKRGLE---KHAPFDAIIVTAAAST------IPSALVRQLKDGGVLV 170 (205)
T ss_pred ECCcccCCc---cCCCccEEEEccCcch------hhHHHHHhcCcCcEEE
Confidence 666543221 2358999998766543 3357788999998643
No 73
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.32 E-value=2.7e-11 Score=94.28 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=77.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhc---CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV---KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~---g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
++.+|||+|||+|..+..+++. ...+|+++|+++.+++.+++++...+.. .++.+...|+.+..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~------------~~v~~~~~d~~~~~- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE------------IPVEILCNDIRHVE- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC------------CCeEEEECChhhCC-
Confidence 5679999999999988877763 2248999999999999999988765422 34677777775442
Q ss_pred CCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~ 137 (191)
...+|+|+++.++++.. +...+++.+.+.|+|||.
T Consensus 120 ----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 120 ----IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred ----CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeE
Confidence 13589999988888754 457899999999999974
No 74
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.32 E-value=7.6e-11 Score=92.39 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=76.9
Q ss_pred cHHHHHHHHhhCCC-CCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 6 SSLLLSEFILSFPE-IFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 6 ~a~~L~~~l~~~~~-~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
.+..|.+.+..... .....+|||+|||+|.+++.+++. +..+|+++|+++.+++.+++|++.|+.
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~------------- 135 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG------------- 135 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------
Confidence 35566666544321 113458999999999999987764 334899999999999999999988752
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--------------------------ChHHHHHHHHHHhccCCC
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRS--------------------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~ll~~~g~ 137 (191)
++...|+.+...... .++||+|+++....... ....+++...++|+|+|.
T Consensus 136 ---~~~~~D~~~~l~~~~-~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 136 ---TVHEGDLYDALPTAL-RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred ---EEEEeechhhcchhc-CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 345566544322111 24799999865432111 034677777889999974
No 75
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.31 E-value=8e-11 Score=93.93 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=74.5
Q ss_pred CcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+|||+|||+|.+++.++.... .+|+++|+++.+++.+++|+..++.. .++.+...||.+.. .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~------------~~v~~~~~d~~~~~----~ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE------------HRVEFIQSNLFEPL----A 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhccC----c
Confidence 6899999999999998887643 48999999999999999999988754 34778888876532 2
Q ss_pred CCCCCEEEEcccccC--------------CC-----------ChHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYD--------------RS-----------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~--------------~~-----------~~~~ll~~l~~ll~~~g~ 137 (191)
..+||+|+++..... +. ....+++...++|+|+|.
T Consensus 180 ~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 180 GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 237999998632211 10 245677888889999874
No 76
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=102.11 Aligned_cols=105 Identities=19% Similarity=0.058 Sum_probs=76.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++++|||+|||+|.+++.++..|+.+|+++|.++.+++.+++|++.|++.. .++.+...|..+.....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-----------~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-----------SKAEFVRDDVFKLLRTY 287 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-----------CcEEEEEccHHHHHHHH
Confidence 3678999999999999998777777799999999999999999999998641 24666666654322110
Q ss_pred -CCCCCCCEEEEcccccCCC----------ChHHHHHHHHHHhccCCC
Q 038343 101 -LSAFVPEIILGADILYDRS----------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 -~~~~~fDvIi~~d~ly~~~----------~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|++. .-|... .+..++....++|+|+|.
T Consensus 288 ~~~~~~fDlVilD-PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~ 334 (396)
T PRK15128 288 RDRGEKFDVIVMD-PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGI 334 (396)
T ss_pred HhcCCCCCEEEEC-CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 123579999974 444333 245556667889999973
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.29 E-value=1.4e-10 Score=90.49 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=80.9
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
+.+..+.+.+..... ..+.+|||+|||+|..++.+++.. ..+++++|+++.+++.+++|+..++..
T Consensus 71 ~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~------------ 137 (251)
T TIGR03534 71 PDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD------------ 137 (251)
T ss_pred CChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------
Confidence 344455555444322 234589999999999999888753 348999999999999999999887643
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC--------------------------hHHHHHHHHHHhccCCC
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRSC--------------------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~--------------------------~~~ll~~l~~ll~~~g~ 137 (191)
++.+...|+.+. +...+||+|+++.++..... ...+++.+.++|+|+|.
T Consensus 138 -~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 138 -NVTFLQSDWFEP----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred -eEEEEECchhcc----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 467777776543 23468999998655432111 23567888889999974
No 78
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=7e-11 Score=93.57 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=81.8
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
.+..|.+.+.......++.+|||+|||+|..++.++... ..+|+++|+++.+++.+++|+. +... .
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~------------~ 158 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG------------A 158 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC------------C
Confidence 345566666544344467799999999999999887764 3489999999999999999987 2221 3
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--------------------------ChHHHHHHHHHHhccCCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRS--------------------------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~ll~~~g~~ 138 (191)
++.+...|+.+.. ..++||+|+++....... .+..+++.+.++|+|+|..
T Consensus 159 ~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l 234 (275)
T PRK09328 159 RVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWL 234 (275)
T ss_pred cEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEE
Confidence 5777888775432 235899999864432111 1356777778999999753
No 79
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.29 E-value=2.8e-11 Score=100.15 Aligned_cols=102 Identities=9% Similarity=-0.002 Sum_probs=78.7
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
+.....++.+|||+|||+|..++.+++. |+ +|+++|+++++++.+++++. +. .+.+...|+.
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l--------------~v~~~~~D~~ 223 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL--------------PVEIRLQDYR 223 (383)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC--------------eEEEEECchh
Confidence 3334457889999999999999977764 55 89999999999999988763 21 2455555554
Q ss_pred CCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 95 SASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+. +++||.|++..++++.. ..+.+++.+.++|+|+|....
T Consensus 224 ~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 224 DL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred hc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 32 25799999999988763 467899999999999987654
No 80
>PRK05785 hypothetical protein; Provisional
Probab=99.29 E-value=2.5e-11 Score=93.77 Aligned_cols=90 Identities=12% Similarity=0.068 Sum_probs=70.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||||..+..+++....+|+++|.+++|++.++++. . ....+..+. .+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---~------------------~~~~d~~~l---p~ 106 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---D------------------KVVGSFEAL---PF 106 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---c------------------eEEechhhC---CC
Confidence 36699999999999988888763238999999999999886531 0 122333222 24
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
++++||+|+++.++++..+.+.+++.+.++|||.
T Consensus 107 ~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 107 RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 5678999999999999999999999999999983
No 81
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.29 E-value=4.2e-11 Score=91.06 Aligned_cols=93 Identities=11% Similarity=0.123 Sum_probs=66.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||+|||+|.....+++. +..+++++|+++.+++.++++.. .+.+...+..+ .
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------------------~~~~~~~d~~~----~ 100 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------------------NINIIQGSLFD----P 100 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------------------CCcEEEeeccC----C
Confidence 5668999999999988877765 34589999999999999987531 12334444433 2
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+.+++||+|++..++++.. .+.+.+.++++.+..++
T Consensus 101 ~~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~~ 136 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSNR 136 (204)
T ss_pred CCCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcCc
Confidence 3456899999999998764 45555666666665543
No 82
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.29 E-value=4.1e-11 Score=92.39 Aligned_cols=93 Identities=22% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+. +|+++|.++.+++.++++....+.. .++.+...|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~------------~~i~~~~~d~~~----- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLA------------GNITFEVGDLES----- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc------------cCcEEEEcCchh-----
Confidence 3567999999999999998888876 7999999999999999988766542 246666666432
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHh
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILL 132 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll 132 (191)
..++||+|++.+++++.+ ....+++.+.+++
T Consensus 124 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 124 -LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred -ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence 235799999999986633 3445555555544
No 83
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=4.4e-11 Score=90.83 Aligned_cols=103 Identities=12% Similarity=-0.007 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC-CCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW-ESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw-~~~~~~ 99 (191)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++..++.. ++.+...|+ ... ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-------------~v~~~~~d~~~~l-~~ 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-------------NLRLLCGDAVEVL-LD 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-------------CEEEEecCHHHHH-HH
Confidence 46689999999999988777653 348999999999999999999887642 467777776 322 11
Q ss_pred CCCCCCCCEEEEcccccCCC--------ChHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILYDRS--------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~--------~~~~ll~~l~~ll~~~g~~ 138 (191)
.+.+++||+|++.-+..+.. ..+.+++.+.++|+|+|..
T Consensus 106 ~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l 152 (202)
T PRK00121 106 MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEI 152 (202)
T ss_pred HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEE
Confidence 13456799999853322111 2578999999999999743
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.28 E-value=6.7e-11 Score=90.66 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=77.8
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
...+.+.....++.+|||+|||+|..+..+++... .+|+++|+++.+++.+++|++.++.. ++.+
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-------------~v~~ 132 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-------------NVIV 132 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-------------CeEE
Confidence 33444433445788999999999999998887643 26999999999999999999887753 4666
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...|..+... ...+||+|++.... ..+.+.+.+.|+|+|....
T Consensus 133 ~~~d~~~~~~---~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 133 IVGDGTQGWE---PLAPYDRIYVTAAG------PKIPEALIDQLKEGGILVM 175 (215)
T ss_pred EECCcccCCc---ccCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEE
Confidence 6666543321 22479999986443 3345678889999986554
No 85
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=9.6e-11 Score=94.33 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=75.7
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|++.++.. .++.+...|+.+.. +
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~------------~~i~~~~~D~~~~l----~ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE------------DRVTLIESDLFAAL----P 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------------CcEEEEECchhhhC----C
Confidence 589999999999999888763 348999999999999999999988754 35777887764432 2
Q ss_pred CCCCCEEEEccccc--------------CCC-----------ChHHHHHHHHHHhccCCCCc
Q 038343 103 AFVPEIILGADILY--------------DRS-----------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 103 ~~~fDvIi~~d~ly--------------~~~-----------~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+||+|+++.... .+. ....+++...++|+|||...
T Consensus 199 ~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 199 GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 34799999864321 111 13567888889999998544
No 86
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=1.1e-10 Score=89.21 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=78.0
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
.+..++.+.....++.+|||+|||+|..+..+++. +. .+|+++|+++++++.+++|++.++.. ++
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-------------~v 129 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-------------NV 129 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------Ce
Confidence 34444444444557889999999999999877765 32 48999999999999999999877643 46
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+...|-.... ....+||+|++...+ ..+.+.+.+.|+|||....
T Consensus 130 ~~~~gd~~~~~---~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 130 EVIVGDGTLGY---EENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred EEEECCcccCC---CcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEE
Confidence 66666643221 123579999986443 2334567788999987443
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.27 E-value=1.4e-10 Score=87.70 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
....++.+|||+|||+|.+++.+++. + ..+|+++|.++.+++.+++|++.+++. .++.+...|..+
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~------------~~v~~~~~d~~~ 103 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL------------NNIVLIKGEAPE 103 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC------------CCeEEEEechhh
Confidence 34457889999999999999987764 3 248999999999999999999988743 245566655543
Q ss_pred CCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 96 ASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.... ...+||.|++.- .......+++.+.++|+|+|...
T Consensus 104 ~l~~--~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 104 ILFT--INEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred hHhh--cCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEE
Confidence 2111 124799999842 33467889999999999998544
No 88
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.26 E-value=1.8e-10 Score=98.52 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=73.8
Q ss_pred CCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.+++|+..++.. .++.+...||.+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~------------~~v~~~~~D~~~~~---- 202 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT------------DRIQIIHSNWFENI---- 202 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc------------cceeeeecchhhhC----
Confidence 458999999999999977653 3458999999999999999999888754 35677777764322
Q ss_pred CCCCCCEEEEcccccCCC--------------------------ChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRS--------------------------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~--------------------------~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+||+|+++....... .+..+++.+.++|+|+|...
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~ 266 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKII 266 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEE
Confidence 235799999854322111 13446777888999998543
No 89
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.25 E-value=1.2e-10 Score=96.22 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=66.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||||||+|.+++.++..+ .+|+++|+++.+++.+++|++.|+.. ++.+...|..+....
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-------------~~~~~~~d~~~~~~~-- 296 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-------------NLSFAALDSAKFATA-- 296 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEECCHHHHHHh--
Confidence 56789999999999999988876 48999999999999999999998753 466677665432211
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHH
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAI 130 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ 130 (191)
...+||+|+. |.-|. .....+++.+.+
T Consensus 297 ~~~~~D~vi~-DPPr~-G~~~~~l~~l~~ 323 (374)
T TIGR02085 297 QMSAPELVLV-NPPRR-GIGKELCDYLSQ 323 (374)
T ss_pred cCCCCCEEEE-CCCCC-CCcHHHHHHHHh
Confidence 1135999887 44453 344555555543
No 90
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.25 E-value=1.7e-10 Score=88.33 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=80.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..+..+++.+. .+++++|+++.+++.++++.. . . .++.+...+..+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~--~------------~~i~~~~~d~~~~~-- 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L--P------------LNIEFIQADAEALP-- 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c--C------------CCceEEecchhcCC--
Confidence 678999999999998887777655 389999999999999988765 1 1 23555666654432
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...++||+|+++..+++..+...+++.+.++|+|+|....
T Consensus 102 -~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 102 -FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred -CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 2345799999999999999999999999999999986553
No 91
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=8.1e-11 Score=98.42 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=92.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+++.......++.++||+.||.|.+++.+|+.. .+|+++|+++++++.+++|++.|++. ++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~-------------N~ 343 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGID-------------NV 343 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCC-------------cE
Confidence 45566666665555567799999999999999999774 49999999999999999999999976 37
Q ss_pred EEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCCCccccccc
Q 038343 87 QCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLNDLTAV 166 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (191)
.+...+-++..........+|+|+. +++....--..++.+.+-+
T Consensus 344 ~f~~~~ae~~~~~~~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~~------------------------------- 387 (432)
T COG2265 344 EFIAGDAEEFTPAWWEGYKPDVVVV-----DPPRAGADREVLKQLAKLK------------------------------- 387 (432)
T ss_pred EEEeCCHHHHhhhccccCCCCEEEE-----CCCCCCCCHHHHHHHHhcC-------------------------------
Confidence 7777776555433323347899887 4443222223444444444
Q ss_pred cCCCCEEEEEecccCHHHHHHhhc
Q 038343 167 TSKGPVAYIATVIRNIDTFNYFLS 190 (191)
Q Consensus 167 ~~~~~~~~va~~~r~~~~~~~f~~ 190 (191)
+..++||+| ||.|+...+.
T Consensus 388 --p~~IvYVSC---NP~TlaRDl~ 406 (432)
T COG2265 388 --PKRIVYVSC---NPATLARDLA 406 (432)
T ss_pred --CCcEEEEeC---CHHHHHHHHH
Confidence 234699999 9999887653
No 92
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.24 E-value=9.2e-11 Score=94.88 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..++.+++.+. +|+++|.++.+++.+++|++.|++. ++++...|..+....
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~-------------~v~~~~~D~~~~~~~-- 236 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLT-------------NVQFQALDSTQFATA-- 236 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-------------ceEEEEcCHHHHHHh--
Confidence 567999999999999999999874 9999999999999999999998853 466777665433211
Q ss_pred CCCCCCEEEEc
Q 038343 102 SAFVPEIILGA 112 (191)
Q Consensus 102 ~~~~fDvIi~~ 112 (191)
...+||+|+..
T Consensus 237 ~~~~~D~Vv~d 247 (315)
T PRK03522 237 QGEVPDLVLVN 247 (315)
T ss_pred cCCCCeEEEEC
Confidence 12469999985
No 93
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.24 E-value=6e-11 Score=94.30 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=86.5
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
.+...+.++.|||+|||+|+++.++++.|+++|++++.+ +|-+.+++-++.|.+. .+|.++....++
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~------------~rItVI~GKiEd 237 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA------------DRITVIPGKIED 237 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc------------ceEEEccCcccc
Confidence 456678999999999999999999999999999999985 7889999999988765 678888887766
Q ss_pred CCcCCCCCCCCCEEEEc---ccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 96 ASESGLSAFVPEIILGA---DILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~---d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.. + +.+.|+||+- -++++..+++.-+..- ++|+|+|+.-
T Consensus 238 ie---L-PEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 238 IE---L-PEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred cc---C-chhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCccc
Confidence 54 2 2579999973 4566777777777655 8999998754
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.23 E-value=2.6e-10 Score=87.16 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=78.3
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.+..++.......++.+|||+|||+|..+..+++.+. +|+++|.++.+++.++++++.++.. ++.+
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~-------------~v~~ 130 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLH-------------NVSV 130 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCC-------------ceEE
Confidence 3344444444445778999999999998888888754 8999999999999999999887643 3566
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...|..+.. ...++||+|++...+ ..+.+.+.+.|+|+|....
T Consensus 131 ~~~d~~~~~---~~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 131 RHGDGWKGW---PAYAPFDRILVTAAA------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred EECCcccCC---CcCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEE
Confidence 666643321 123579999986543 3345678899999986544
No 95
>PRK06202 hypothetical protein; Provisional
Probab=99.22 E-value=2.5e-10 Score=88.38 Aligned_cols=93 Identities=19% Similarity=0.097 Sum_probs=66.2
Q ss_pred CCCcEEEeCCCccHHHHHHHh----cCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH----VKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~----~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
++.+|||+|||+|..+..+++ .|. .+|+++|+++.+++.++++...++ +.+...+-+..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----------------~~~~~~~~~~l 123 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----------------VTFRQAVSDEL 123 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----------------CeEEEEecccc
Confidence 556999999999988877664 232 389999999999999987654333 22222222211
Q ss_pred CcCCCCCCCCCEEEEcccccCCCCh--HHHHHHHHHHhc
Q 038343 97 SESGLSAFVPEIILGADILYDRSCF--PDLVRILAILLN 133 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~--~~ll~~l~~ll~ 133 (191)
. ..+++||+|+++.++++..+. ..+++.+.++++
T Consensus 124 ~---~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 124 V---AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred c---ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 1 134689999999999988763 467888888876
No 96
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.21 E-value=2.6e-10 Score=91.88 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=83.0
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
+.+.....++.+|||+|||+|..++.+++..+ .+++++|. +.+++.+++|+...+.. .++++...|
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~------------~rv~~~~~d 207 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA------------DRMRGIAVD 207 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc------------ceEEEEecC
Confidence 33333334567999999999999998777643 38999998 78999999999887754 467888887
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcc
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+.. + ..+|+|+.+.++|+... ...+++.+.+.|+|||+..+
T Consensus 208 ~~~~~---~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 208 IYKES---Y--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred ccCCC---C--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 65321 2 24799999999986543 45799999999999987654
No 97
>PRK04266 fibrillarin; Provisional
Probab=99.20 E-value=3.5e-10 Score=87.22 Aligned_cols=104 Identities=7% Similarity=-0.006 Sum_probs=69.9
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++.+|||+|||+|..++.+++. +..+|+++|.++.|++.+.++++.. .++.+...|.....
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---------------~nv~~i~~D~~~~~ 133 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---------------KNIIPILADARKPE 133 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---------------CCcEEEECCCCCcc
Confidence 3457889999999999999988875 3348999999999999887776532 12444444443221
Q ss_pred c-CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 98 E-SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 98 ~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. ..+. .+||+|+.. + .++.....+++.+.++|||||...+
T Consensus 134 ~~~~l~-~~~D~i~~d-~-~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 134 RYAHVV-EKVDVIYQD-V-AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred hhhhcc-ccCCEEEEC-C-CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 0 1112 359999852 1 1222234568999999999987655
No 98
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=9.6e-11 Score=103.89 Aligned_cols=104 Identities=15% Similarity=0.059 Sum_probs=78.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++++|||||||||.+++.+++.|+++|+++|+++.+++.+++|++.|++.. .++++...|..+.... .
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~-----------~~v~~i~~D~~~~l~~-~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSG-----------RQHRLIQADCLAWLKE-A 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-----------cceEEEEccHHHHHHH-c
Confidence 578999999999999999999888789999999999999999999998641 2466666664332111 1
Q ss_pred CCCCCCEEEEcccccCC-----------CChHHHHHHHHHHhccCCCC
Q 038343 102 SAFVPEIILGADILYDR-----------SCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~-----------~~~~~ll~~l~~ll~~~g~~ 138 (191)
..+||+|++...-+.. .++..++..+.++|+|+|..
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l 652 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTL 652 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEE
Confidence 3579999984333211 23567888889999999743
No 99
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.19 E-value=2.1e-11 Score=91.07 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=72.6
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.++|||.||||.+|+.+.+.|+++|+++|.++.++..+++|++.-+.. .++.+...|........
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~------------~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE------------DKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G------------GGEEEEESSHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC------------cceeeeccCHHHHHHhh
Confidence 688999999999999999999999999999999999999999999887755 23555555432211110
Q ss_pred -CCCCCCCEEEEcccccCCCCh-HHHHHHHH--HHhccCC
Q 038343 101 -LSAFVPEIILGADILYDRSCF-PDLVRILA--ILLNRRK 136 (191)
Q Consensus 101 -~~~~~fDvIi~~d~ly~~~~~-~~ll~~l~--~ll~~~g 136 (191)
....+||+|++ |.-|..... ..+++.+. .+|+++|
T Consensus 109 ~~~~~~fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~~ 147 (183)
T PF03602_consen 109 AKKGEKFDIIFL-DPPYAKGLYYEELLELLAENNLLNEDG 147 (183)
T ss_dssp HHCTS-EEEEEE---STTSCHHHHHHHHHHHHTTSEEEEE
T ss_pred cccCCCceEEEE-CCCcccchHHHHHHHHHHHCCCCCCCE
Confidence 13468999987 888888874 88888887 5777664
No 100
>PRK06922 hypothetical protein; Provisional
Probab=99.19 E-value=1.2e-10 Score=100.55 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=76.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..+..+++. ...+|+++|+++.|++.++++...++. ++.+...|..+. ..
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--------------~ie~I~gDa~dL-p~ 481 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--------------SWNVIKGDAINL-SS 481 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------------CeEEEEcchHhC-cc
Confidence 46789999999999888766653 334999999999999999987655432 344455554332 11
Q ss_pred CCCCCCCCEEEEcccccCC-------------CChHHHHHHHHHHhccCCCCcc
Q 038343 100 GLSAFVPEIILGADILYDR-------------SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~-------------~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+++++||+|+++.++++. .....+++.+.++|||||....
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2345689999998777632 3567889999999999987654
No 101
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=1.6e-10 Score=98.33 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++.+|||+|||+|..+..+++.+. +|+++|+++.+++.++. .++.. .++.+...|..... ..
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~---~~~~~------------~~i~~~~~d~~~~~-~~ 98 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNES---INGHY------------KNVKFMCADVTSPD-LN 98 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHH---HhccC------------CceEEEEecccccc-cC
Confidence 3567999999999999998888754 89999999999976543 22211 24666777664321 12
Q ss_pred CCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~ 138 (191)
+++++||+|++..++++..+ ...+++.+.++|+|+|..
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l 138 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYI 138 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 34568999999999998765 678999999999999864
No 102
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.18 E-value=3e-10 Score=95.61 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=75.2
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~ 87 (191)
..|.+.+.......++.+|||+|||+|..++.+++.+ .+|+++|+++.+++.+++|++.|++. ++.
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~-------------nv~ 343 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIA-------------NVE 343 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCC-------------ceE
Confidence 3444444443333456799999999999999998875 48999999999999999999998853 467
Q ss_pred EEeecCCCCCcC-CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 88 CVHLPWESASES-GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 88 ~~~ldw~~~~~~-~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
+...|+.+.... ...+.+||+|+. |.-+. .....+++.+.+ ++|+
T Consensus 344 ~~~~d~~~~l~~~~~~~~~~D~vi~-dPPr~-G~~~~~l~~l~~-l~~~ 389 (431)
T TIGR00479 344 FLAGTLETVLPKQPWAGQIPDVLLL-DPPRK-GCAAEVLRTIIE-LKPE 389 (431)
T ss_pred EEeCCHHHHHHHHHhcCCCCCEEEE-CcCCC-CCCHHHHHHHHh-cCCC
Confidence 777776442111 122346999987 33232 234566666554 4443
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.18 E-value=2.7e-10 Score=75.61 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=74.9
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
+|+|+|||+|..+..+++....+++++|.++..++.++++...+.. ..+.+...++.+... ....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~ 65 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-------------DNVEVLKGDAEELPP--EADE 65 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-------------cceEEEEcChhhhcc--ccCC
Confidence 5899999999988877774456999999999999888764333221 246666666655432 1335
Q ss_pred CCCEEEEcccccC-CCChHHHHHHHHHHhccCC
Q 038343 105 VPEIILGADILYD-RSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 105 ~fDvIi~~d~ly~-~~~~~~ll~~l~~ll~~~g 136 (191)
+||+|++..++++ ......+++.+.++++++|
T Consensus 66 ~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 66 SFDVIISDPPLHHLVEDLARFLEEARRLLKPGG 98 (107)
T ss_pred ceEEEEEccceeehhhHHHHHHHHHHHHcCCCC
Confidence 7999999999988 8899999999999999986
No 104
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.18 E-value=2.5e-10 Score=86.20 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=75.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
...+|||||||+|..+..+++.. ..+|+++|+++.+++.+++++..+++. ++.+...|..+.....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-------------ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-------------NLHVLCGDANELLDKF 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-------------CEEEEccCHHHHHHhh
Confidence 34589999999999998777753 348999999999999999998877643 4677777764332222
Q ss_pred CCCCCCCEEEEcc--cccCCC------ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGAD--ILYDRS------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d--~ly~~~------~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.++.+|.|+..- ..+... ..+.+++.+.++|+|||...
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~ 129 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIH 129 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEE
Confidence 3345799998752 222111 12679999999999998543
No 105
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.17 E-value=4.2e-11 Score=91.11 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=69.6
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC--
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS-- 102 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~-- 102 (191)
.++|+|||+|..++.++.. .++|++||.++.||+.+++.-...-.. ....+.+.+...+.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~-----------------t~~~ms~~~~v~L~g~ 97 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCH-----------------TPSTMSSDEMVDLLGG 97 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccccc-----------------CCccccccccccccCC
Confidence 7999999999888888877 569999999999999776532211111 11111111111122
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+++.|+|+++.++|+.+ .+.+.+.+.++||+.|+..
T Consensus 98 e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 98 EESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred CcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEE
Confidence 46899999999999884 8899999999999998644
No 106
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.16 E-value=4e-10 Score=86.52 Aligned_cols=128 Identities=17% Similarity=0.079 Sum_probs=95.8
Q ss_pred CCCCcEEEeCCCccHHHHHH-HhcCC------CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 21 FSNKSCFEVGSGVGLVGICL-AHVKA------SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~l-a~~g~------~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
..+.++||++||||-++.-+ -..+. ++|+..|+||+||...++..+..++... ..+.+...|-
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~----------~~~~w~~~dA 168 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS----------SRVEWVEGDA 168 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC----------CceEEEeCCc
Confidence 36789999999999777743 33333 6999999999999999888766544311 2355555554
Q ss_pred CCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCCCcc
Q 038343 94 ESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTNDLN 161 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (191)
++. .+++.+||....+--|-+..+++..++...++|||||...++-++-.....+..|.....++
T Consensus 169 E~L---pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 169 EDL---PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred ccC---CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 433 26778999999988899999999999999999999998887777666555666666555433
No 107
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.16 E-value=7.6e-10 Score=90.09 Aligned_cols=113 Identities=19% Similarity=0.110 Sum_probs=82.4
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.|+..+.......++.+|||.|||+|.+.+.++..+. +++++|+++.++..++.|++.++.. .+.+
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~-------------~i~~ 234 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIE-------------DFFV 234 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCC-------------CCeE
Confidence 3455554444445678999999999999888888876 8999999999999999999887754 2455
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCC----------CChHHHHHHHHHHhccCCCCc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDR----------SCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~----------~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...|..+.. ..+++||+|++.. -|.. .....+++.+.+.|+|+|...
T Consensus 235 ~~~D~~~l~---~~~~~~D~Iv~dP-Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 235 KRGDATKLP---LSSESVDAIATDP-PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred EecchhcCC---cccCCCCEEEECC-CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 555554332 2346899999853 3421 125788999999999998544
No 108
>PLN03075 nicotianamine synthase; Provisional
Probab=99.16 E-value=9.7e-10 Score=87.34 Aligned_cols=103 Identities=17% Similarity=0.029 Sum_probs=77.7
Q ss_pred CCCcEEEeCCCcc-HHHHHHHh-c-CCCeEEEEcCChHHHHHHHHHHHH-hcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVG-LVGICLAH-V-KASKVTLTDGDHLTLANMRSNLEL-NQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG-~~~~~la~-~-g~~~v~~tD~~~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++|+|+|||.| +.++.+++ . ...+++++|+++++++.+++++.. .++. .++.+...|..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~------------~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS------------KRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc------------CCcEEEECchhhcc
Confidence 6779999999955 66775553 3 334899999999999999999864 4433 46888888765432
Q ss_pred cCCCCCCCCCEEEEcccccC-CCChHHHHHHHHHHhccCCCCc
Q 038343 98 ESGLSAFVPEIILGADILYD-RSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~-~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. ...+||+|++.-++|. ......+++.+.+.|+|||...
T Consensus 191 ~---~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 191 E---SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred c---ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEE
Confidence 1 1357999999844443 4799999999999999997543
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.14 E-value=7e-10 Score=81.18 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=81.9
Q ss_pred HHHHHHHHhhCCC---CCCCC-cEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 7 SLLLSEFILSFPE---IFSNK-SCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 7 a~~L~~~l~~~~~---~~~~~-~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
-..+.+|+..+.. .-+.. +|||||||.|.+-.-+++-|.. ..+++|+++.+++.++..++.++..
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~---------- 117 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS---------- 117 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC----------
Confidence 4456667665433 11233 8999999999888888887654 5999999999999998777777765
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEc---cccc-CC----CChHHHHHHHHHHhccCCC
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGA---DILY-DR----SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~---d~ly-~~----~~~~~ll~~l~~ll~~~g~ 137 (191)
+.|++.++|..++ .+..++||+|+-- |.+- ++ ..+..-+..+.++|+|+|.
T Consensus 118 --n~I~f~q~DI~~~---~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gi 176 (227)
T KOG1271|consen 118 --NEIRFQQLDITDP---DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGI 176 (227)
T ss_pred --cceeEEEeeccCC---cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcE
Confidence 5689999998765 2344678888742 2221 11 1124457889999999873
No 110
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=2.6e-09 Score=90.26 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.++.. +..+|+++|.++.+++.+++|++.++.. ++.+...|.....
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-------------~v~~~~~Da~~~~- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-------------IIETIEGDARSFS- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-------------eEEEEeCcccccc-
Confidence 36789999999999888876653 2248999999999999999999887753 3666666654432
Q ss_pred CCCCCCCCCEEEEccccc-------CCC----------------ChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILY-------DRS----------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly-------~~~----------------~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+|++ |+.+ ..+ ....++....++|+|||.
T Consensus 315 ---~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 315 ---PEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred ---cCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 2357999985 2221 111 123589999999999974
No 111
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.13 E-value=4.6e-10 Score=88.64 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=74.5
Q ss_pred CCCcEEEeCCCccH----HHHHHHhcC------CCeEEEEcCChHHHHHHHHHHH----HhcCCCC----ccccc-----
Q 038343 22 SNKSCFEVGSGVGL----VGICLAHVK------ASKVTLTDGDHLTLANMRSNLE----LNQLSTD----TSLLE----- 78 (191)
Q Consensus 22 ~~~~VLElG~GtG~----~~~~la~~g------~~~v~~tD~~~~~l~~~~~n~~----~n~~~~~----~~~~~----- 78 (191)
++.+|+|+|||||- +++.++..+ ..+|+++|+|+.+|+.+++.+- ..+.... .....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 455555432 1389999999999999987541 1111000 00000
Q ss_pred -ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 79 -SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 79 -~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
...-...+.+...|..+.. .+.++||+|+|..++++.+ ....+++.+.+.|+|||...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~---~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~ 239 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES---PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLF 239 (264)
T ss_pred EChHHhCcCEEeeccCCCCC---CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 0001135667777665432 2346899999999887764 45679999999999998533
No 112
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.12 E-value=2.4e-09 Score=90.10 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=75.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
+..++.++. ..++.+|||+|||+|..++.++.. +..+|+++|.++.+++.+++|++.++.. ..
T Consensus 227 s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~------------~~ 290 (426)
T TIGR00563 227 AQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT------------IK 290 (426)
T ss_pred HHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC------------eE
Confidence 444444442 235779999999999988877764 4358999999999999999999988754 12
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEE------cccccCCCC----------------hHHHHHHHHHHhccCCC
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILG------ADILYDRSC----------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~------~d~ly~~~~----------------~~~ll~~l~~ll~~~g~ 137 (191)
+.....|...... .....+||.|++ +.++...++ ...+++...++|+|||.
T Consensus 291 v~~~~~d~~~~~~-~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 291 AETKDGDGRGPSQ-WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred EEEeccccccccc-cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 2223333322110 012357999985 223433222 35788899999999973
No 113
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.12 E-value=2e-09 Score=81.34 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++.+|||+|||+|..++.+++.. ..+|+++|.++.+++.+++|++.++.. ++++...|..+..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-------------~v~~~~~d~~~~~ 103 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-------------NVEVIEGSAPECL 103 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------CeEEEECchHHHH
Confidence 33467799999999999999877643 358999999999999999999887643 3555555543211
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
. .. ...+|.|+.. .....+.+++.+.++|+|+|...
T Consensus 104 ~-~~-~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG~li 139 (196)
T PRK07402 104 A-QL-APAPDRVCIE----GGRPIKEILQAVWQYLKPGGRLV 139 (196)
T ss_pred h-hC-CCCCCEEEEE----CCcCHHHHHHHHHHhcCCCeEEE
Confidence 1 11 1235665442 23456899999999999998644
No 114
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.12 E-value=2.4e-09 Score=90.23 Aligned_cols=104 Identities=14% Similarity=0.051 Sum_probs=74.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.++.. + ..+|+++|.++.+++.+++|++.++.. ++.+...|......
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-------------~v~~~~~D~~~~~~ 317 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-------------SIKILAADSRNLLE 317 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------------eEEEEeCChhhccc
Confidence 36779999999999988877764 2 248999999999999999999988754 35666666443321
Q ss_pred CC-CCCCCCCEEEEc------ccccCCCC----------------hHHHHHHHHHHhccCCC
Q 038343 99 SG-LSAFVPEIILGA------DILYDRSC----------------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~-~~~~~fDvIi~~------d~ly~~~~----------------~~~ll~~l~~ll~~~g~ 137 (191)
.. ...++||.|++- .++...++ ...++....++|+|||.
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~ 379 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGT 379 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 10 123579999961 23332222 35778899999999973
No 115
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.12 E-value=2.6e-09 Score=78.87 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=78.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..++.+++|+|||||.+++.++..+. .+|+++|.++++++.+++|.+..+.+ ++.+...+--+...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-------------n~~vv~g~Ap~~L~ 98 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-------------NLEVVEGDAPEALP 98 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-------------cEEEEeccchHhhc
Confidence 44788999999999999998886654 39999999999999999999998843 57777766433321
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...+||.|+...- ...+.+++++...|+|+|+
T Consensus 99 ---~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggr 130 (187)
T COG2242 99 ---DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGR 130 (187)
T ss_pred ---CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCe
Confidence 1126999987543 6799999999999999973
No 116
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.11 E-value=6.1e-10 Score=83.97 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++.+|||+|||+|..+..++......++++|+++++++.++. ++ +.+...+..+... .+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~~----------------~~~~~~d~~~~l~-~~ 71 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----RG----------------VNVIQGDLDEGLE-AF 71 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----cC----------------CeEEEEEhhhccc-cc
Confidence 466999999999988887765443478999999998877653 12 2334444433111 13
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhcc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNR 134 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~ 134 (191)
.+++||+|+++.++++..+...+++.+.+.+++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 446899999999999998888888877766553
No 117
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=6.3e-10 Score=82.44 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=74.2
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.+.|.++|||.+|+|.+|+.+.+.|+.+++++|.+..++..+++|++.-+.. .+..+...|-......
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~------------~~~~~~~~da~~~L~~ 108 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE------------GEARVLRNDALRALKQ 108 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc------------cceEEEeecHHHHHHh
Confidence 3689999999999999999999999999999999999999999999887744 2334444332211111
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHH----HHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILA----ILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~----~ll~~~g 136 (191)
.-...+||+|+. |.-|.....+..+..+. .+|+|++
T Consensus 109 ~~~~~~FDlVfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 109 LGTREPFDLVFL-DPPYAKGLLDKELALLLLEENGWLKPGA 148 (187)
T ss_pred cCCCCcccEEEe-CCCCccchhhHHHHHHHHHhcCCcCCCc
Confidence 111125999997 88888666644444443 4677774
No 118
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=3.1e-09 Score=89.86 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=73.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.+++. +..+|+++|+++.+++.+++|++.++.. ++.+...|..+...
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-------------~v~~~~~D~~~~~~- 315 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-------------NIETKALDARKVHE- 315 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCCcccccc-
Confidence 5679999999999999877764 2358999999999999999999988754 36777777654321
Q ss_pred CCCCCCCCEEEEcccccC--------CC--------C-------hHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYD--------RS--------C-------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~--------~~--------~-------~~~ll~~l~~ll~~~g~ 137 (191)
.+. ++||+|++. .-+. ++ + ...+++...++|+|||.
T Consensus 316 ~~~-~~fD~Vl~D-~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 374 (444)
T PRK14902 316 KFA-EKFDKILVD-APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGI 374 (444)
T ss_pred hhc-ccCCEEEEc-CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 122 579999973 2211 10 1 13578888999999975
No 119
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.10 E-value=3.2e-10 Score=88.00 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=76.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.+.++|||+|||+|..++.++.. +..+|+++|.++++++.+++|++.+++. .++++...+..+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~------------~~i~~~~gda~~~L~ 134 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD------------HKINFIQSDALSALD 134 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEccHHHHHH
Confidence 36779999999999888866553 3459999999999999999999999875 467777777654321
Q ss_pred C---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 S---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
. ....++||+|+. |. ....+..++..+.++|+|||.
T Consensus 135 ~l~~~~~~~~fD~Vfi-Da--~k~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 135 QLLNNDPKPEFDFAFV-DA--DKPNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred HHHhCCCCCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCCeE
Confidence 1 011357999987 32 234566788999999999973
No 120
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.10 E-value=1e-11 Score=93.74 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
-+++||||||||+.|..+-.+ +.+.+++|+|..|++.+.++=-...+- ......+... ..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~L~---------------~Aea~~Fl~~----~~ 185 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDTLY---------------VAEAVLFLED----LT 185 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHHHH---------------HHHHHHHhhh----cc
Confidence 468999999999999988887 458999999999998886532111100 0001111111 23
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+||+|.++||+-+...++.++-....+|+|+|-..+
T Consensus 186 ~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 186 QERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred CCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEE
Confidence 35899999999999999999999999999999986554
No 121
>PRK04457 spermidine synthase; Provisional
Probab=99.10 E-value=1e-09 Score=86.49 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=73.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++|||||||+|.++..+++. +..+++++|+++++++.+++++..+... .++++...|..+....
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~------------~rv~v~~~Da~~~l~~- 132 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG------------ERFEVIEADGAEYIAV- 132 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC------------CceEEEECCHHHHHHh-
Confidence 4568999999999999877654 3358999999999999999887544321 3566666664322111
Q ss_pred CCCCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRS-----CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...+||+|+. |.+.... ....+++.+++.|+|+|....
T Consensus 133 -~~~~yD~I~~-D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 133 -HRHSTDVILV-DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred -CCCCCCEEEE-eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 1247999997 4332221 237899999999999986543
No 122
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.08 E-value=1.5e-09 Score=83.08 Aligned_cols=129 Identities=11% Similarity=-0.030 Sum_probs=84.0
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccc--cccCCCC
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLL--ESYEDPN 84 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~--~~~~~~~ 84 (191)
...|.+++..... .++.+||++|||.|.-++++|..|. +|+++|+++.+++.+.. .++........ .......
T Consensus 20 ~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 20 NPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecC
Confidence 4566677655321 2566999999999999999999998 89999999999997532 22221100000 0000123
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcccc
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
++++...|..+.... ..+.||.|+-.-++.+. +..+..++.+.++|+|||....+.
T Consensus 95 ~v~~~~~D~~~~~~~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 95 NIEIFCGDFFALTAA--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred ceEEEEccCCCCCcc--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 566677776544321 12469999987666543 345678999999999998644443
No 123
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.08 E-value=1.1e-09 Score=90.08 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=70.7
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|.+++...... .+.+||||+||+|.+++.+++. +++|+++|.++.+++.+++|+..|++. ++
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-------------~v 256 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-------------NV 256 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-------------cE
Confidence 44555555443221 2347999999999999988876 459999999999999999999999864 45
Q ss_pred EEEeecCCCCCcCCC-------------CCCCCCEEEEcccccCCCChHHHHHHHHH
Q 038343 87 QCVHLPWESASESGL-------------SAFVPEIILGADILYDRSCFPDLVRILAI 130 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~-------------~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ 130 (191)
.+...|..+...... ...+||+|+. |.-+ ....+.+++.|.+
T Consensus 257 ~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l~~ 311 (362)
T PRK05031 257 QIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLVQA 311 (362)
T ss_pred EEEECCHHHHHHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHHHc
Confidence 666666543211000 0225899888 5555 3344555555543
No 124
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.08 E-value=1.9e-09 Score=82.34 Aligned_cols=96 Identities=7% Similarity=-0.029 Sum_probs=66.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC-C-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK-A-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g-~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||||||+|..+..+++.. . .+|+++|+++ + +.. ..+.+...|+.+...
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-------------~~v~~i~~D~~~~~~ 105 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-------------VGVDFLQGDFRDELV 105 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-------------CCcEEEecCCCChHH
Confidence 467799999999999998777653 2 4899999986 1 111 236677778765420
Q ss_pred -----CCCCCCCCCEEEEcccccCCCC-----------hHHHHHHHHHHhccCCCCcc
Q 038343 99 -----SGLSAFVPEIILGADILYDRSC-----------FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 -----~~~~~~~fDvIi~~d~ly~~~~-----------~~~ll~~l~~ll~~~g~~~~ 140 (191)
..+...+||+|++.-..+.... .+.+++.+.++|+|||....
T Consensus 106 ~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 106 LKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 1134468999998654543322 25689999999999986544
No 125
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.08 E-value=1.4e-09 Score=89.26 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=48.2
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
..|.+++...... .+.+|||||||+|.+++.+++.. .+|+++|.++.+++.+++|++.|++.
T Consensus 184 ~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 184 IKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3444444443321 23479999999999999888774 59999999999999999999999864
No 126
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.07 E-value=4.3e-09 Score=83.13 Aligned_cols=100 Identities=8% Similarity=0.015 Sum_probs=69.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|||+|||+|..++.++.. + ...|+++|.++.+++.+++|++.++.. ++.+...|......
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-------------~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-------------NVAVTNFDGRVFGA- 136 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-------------cEEEecCCHHHhhh-
Confidence 6779999999999988877664 2 248999999999999999999998753 35555555432211
Q ss_pred CCCCCCCCEEEEcc------cccCCC----------------ChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGAD------ILYDRS----------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d------~ly~~~----------------~~~~ll~~l~~ll~~~g~ 137 (191)
...+||.|+.-- ++...+ ....+++...++|+|||.
T Consensus 137 --~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 194 (264)
T TIGR00446 137 --AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGV 194 (264)
T ss_pred --hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 124699998621 111111 124588888889999973
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=6.8e-09 Score=87.33 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=72.3
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++.+|||+|||+|..++.++..+. .+|+++|.++.+++.+++|++.++.. +.+...|..+...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--------------~~~~~~D~~~~~~- 307 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--------------ATVIVGDARDPAQ- 307 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--------------eEEEEcCcccchh-
Confidence 3678999999999999988777643 48999999999999999999888743 3455555443211
Q ss_pred CCCCCCCCEEEEccccc------CCC------C----------hHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILY------DRS------C----------FPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly------~~~------~----------~~~ll~~l~~ll~~~g~~ 138 (191)
.....+||.|++.-... ..+ . ...+++...++|+|||..
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~l 368 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTL 368 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 12235799999522111 000 1 236888999999999853
No 128
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.5e-09 Score=79.75 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=80.2
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.+...+.+.....++.+|||+|||+|..+..++++.. +|+.+|..++..+.+++|++..+.. ++.+
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-------------nV~v 124 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-------------NVTV 124 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-------------ceEE
Confidence 3333444444555788999999999999999999965 9999999999999999999988864 3677
Q ss_pred EeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcccc
Q 038343 89 VHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 89 ~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
...|=..-. .+..+||.|+..-.. +.+-+.+.+-|++||+...-.
T Consensus 125 ~~gDG~~G~---~~~aPyD~I~Vtaaa------~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 125 RHGDGSKGW---PEEAPYDRIIVTAAA------PEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred EECCcccCC---CCCCCcCEEEEeecc------CCCCHHHHHhcccCCEEEEEE
Confidence 776633221 123689999875432 223356677788998766433
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=5.6e-09 Score=87.86 Aligned_cols=101 Identities=14% Similarity=0.033 Sum_probs=72.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|++..+.. ++.+...|......
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-------------~v~~~~~Da~~l~~ 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-------------SIEIKIADAERLTE 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------eEEEEECchhhhhh
Confidence 36779999999999888877664 2348999999999999999999887753 35666666543321
Q ss_pred CCCCCCCCCEEEEcccccC-------CC----------------ChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYD-------RS----------------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~-------~~----------------~~~~ll~~l~~ll~~~g~ 137 (191)
...++||.|++ |+.+. .+ ....++....++|+|||.
T Consensus 303 --~~~~~fD~Vl~-DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~ 361 (431)
T PRK14903 303 --YVQDTFDRILV-DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI 361 (431)
T ss_pred --hhhccCCEEEE-CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 12357999997 22221 11 125568888899999974
No 130
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.06 E-value=1.2e-09 Score=84.10 Aligned_cols=110 Identities=19% Similarity=0.125 Sum_probs=75.3
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHH-HHHHHHHhcCCCCcccccccC
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLAN-MRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~-~~~n~~~n~~~~~~~~~~~~~ 81 (191)
++.++..|...+......+++++|||+|||||.++..+++.|+++|+++|.++.++.. ++.+.+....
T Consensus 56 vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~----------- 124 (228)
T TIGR00478 56 VSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL----------- 124 (228)
T ss_pred hhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe-----------
Confidence 4567888888888776667899999999999999999999998899999999977754 3322110000
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
....+..++|++... .-..+|+++++- ..++..+..+|++ |.
T Consensus 125 --~~~ni~~~~~~~~~~---d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~ 166 (228)
T TIGR00478 125 --ERTNIRYVTPADIFP---DFATFDVSFISL--------ISILPELDLLLNP-ND 166 (228)
T ss_pred --ecCCcccCCHhHcCC---CceeeeEEEeeh--------HhHHHHHHHHhCc-Ce
Confidence 011223455655431 113678877753 3358889999998 44
No 131
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=6.5e-11 Score=92.32 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=87.4
Q ss_pred cccccHHHHHHHHhhC---CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHH-HHHHHhcCCCCcccc
Q 038343 2 SIWPSSLLLSEFILSF---PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMR-SNLELNQLSTDTSLL 77 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~---~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~-~n~~~n~~~~~~~~~ 77 (191)
.+|+++..|..++... .-.+.+++|||||||+|+.++.+...|...+.+.|++.+.++... .|+..|-....
T Consensus 93 k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~---- 168 (282)
T KOG2920|consen 93 KLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV---- 168 (282)
T ss_pred EEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh----
Confidence 5899999999999854 335689999999999999999999988779999999988884322 22222211100
Q ss_pred cccCCCCeeEEEee---cCCCCCcCCCCCCCCCEEEEcccccCCCChHHH-HHHHHHHhccCCCCc
Q 038343 78 ESYEDPNVVQCVHL---PWESASESGLSAFVPEIILGADILYDRSCFPDL-VRILAILLNRRKSVS 139 (191)
Q Consensus 78 ~~~~~~~~i~~~~l---dw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~l-l~~l~~ll~~~g~~~ 139 (191)
+..+......+..- ||...... ...||+|+++.++|.+.....+ ......+++++|...
T Consensus 169 ~~~e~~~~~~i~~s~l~dg~~~~t~---~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~ 231 (282)
T KOG2920|consen 169 EEKENHKVDEILNSLLSDGVFNHTE---RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFY 231 (282)
T ss_pred hhhhcccceeccccccccchhhhcc---ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhh
Confidence 00000011111111 55222111 1279999999999999998888 667777777776433
No 132
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.06 E-value=4.5e-10 Score=83.36 Aligned_cols=88 Identities=9% Similarity=0.048 Sum_probs=68.0
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++.+|||||||.|.+-..+.. .+. +.+++|++++.+..+. .++ +.+.+.|.++.. ..
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v~~cv----~rG----------------v~Viq~Dld~gL-~~ 70 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNVAACV----ARG----------------VSVIQGDLDEGL-AD 70 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHHHHHH----HcC----------------CCEEECCHHHhH-hh
Confidence 677999999999966665555 444 8999999987665443 233 567888887653 34
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHH
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAIL 131 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l 131 (191)
+++++||+||.++++.....++.+|+.+.++
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRPDEVLEEMLRV 101 (193)
T ss_pred CCCCCccEEehHhHHHhHhHHHHHHHHHHHh
Confidence 7788999999999999998888887777555
No 133
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.3e-09 Score=81.08 Aligned_cols=111 Identities=17% Similarity=0.082 Sum_probs=84.5
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
||.......+|.+|||.|.|+|.++.+++. .|. .+|+..|+.++.++.+++|++..++. +.+....
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~------------d~v~~~~ 152 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG------------DRVTLKL 152 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc------------cceEEEe
Confidence 344445567899999999999999998886 444 59999999999999999999988655 3355555
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCC
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
.|..+... ...||.|+. +.+++...++.+..+|+|||.. ++.+|+
T Consensus 153 ~Dv~~~~~----~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~--~~y~P~ 197 (256)
T COG2519 153 GDVREGID----EEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVV--VVYSPT 197 (256)
T ss_pred cccccccc----ccccCEEEE-----cCCChHHHHHHHHHHhCCCcEE--EEEcCC
Confidence 55543322 237999876 7788999999999999999643 334444
No 134
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=4.6e-09 Score=84.96 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=73.2
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
++.+.....++.+|||+|||+|..+..+++... .+|+++|.++++++.++++++.++.. ++.+..
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-------------nV~~i~ 137 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-------------NVIFVC 137 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEe
Confidence 333333444678999999999999998887532 36999999999999999999887753 355555
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.|..+... ...+||+|+++.. .+.+...+.+.|+|+|...
T Consensus 138 gD~~~~~~---~~~~fD~Ii~~~g------~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 138 GDGYYGVP---EFAPYDVIFVTVG------VDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred CChhhccc---ccCCccEEEECCc------hHHhHHHHHHhcCCCCEEE
Confidence 55432211 1246999998532 2234456778899998644
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=2.5e-09 Score=82.95 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCCCCCcEEEeCCCccHHHHHH-HhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICL-AHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~l-a~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..+++..+||+|||+|.+++.+ ..++...|+++|.++.++..+.+|++.+++. +.+.++..+.+...
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~------------g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 145 EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS------------GRIEVIHNIMESDA 212 (328)
T ss_pred hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc------------CceEEEeccccccc
Confidence 3345668999999999999955 4466669999999999999999999999887 56777755443322
Q ss_pred cC--CCCCCCCCEEEEccccc
Q 038343 98 ES--GLSAFVPEIILGADILY 116 (191)
Q Consensus 98 ~~--~~~~~~fDvIi~~d~ly 116 (191)
.. ....+++|+++++...-
T Consensus 213 ~~~~~l~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 213 SDEHPLLEGKIDLLVSNPPYI 233 (328)
T ss_pred ccccccccCceeEEecCCCcc
Confidence 11 13457899999876543
No 136
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.03 E-value=1.2e-09 Score=82.05 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+-.+|.|||||+|.....+++ .....++++|.|++|++.++... .+.++...|...-.
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------------p~~~f~~aDl~~w~--- 88 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------------PDATFEEADLRTWK--- 88 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------------------CCCceecccHhhcC---
Confidence 456899999999977765555 55569999999999998885432 22344444432221
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+..+.|+|+++-++++.+++..++..+-..|.|||-
T Consensus 89 -p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 89 -PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGV 124 (257)
T ss_pred -CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCce
Confidence 235799999999999999999999999999999973
No 137
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=90.29 Aligned_cols=106 Identities=20% Similarity=0.068 Sum_probs=79.4
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES- 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~- 99 (191)
..|++||++.|-||..|+.++..|+++||.+|.|..+|+.+++|++.|++.. .++.+...|.-+....
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~-----------~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG-----------DRHRFIVGDVFKWLRKA 284 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc-----------cceeeehhhHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999763 2344444442221111
Q ss_pred CCCCCCCCEEEEcccccC---------CCChHHHHHHHHHHhccCCC
Q 038343 100 GLSAFVPEIILGADILYD---------RSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~---------~~~~~~ll~~l~~ll~~~g~ 137 (191)
.-...+||+||.=.+=|. ..++..++....++|+|+|.
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~ 331 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGT 331 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCE
Confidence 112348999998333331 13577888899999999973
No 138
>PHA03411 putative methyltransferase; Provisional
Probab=99.02 E-value=3.5e-09 Score=83.13 Aligned_cols=98 Identities=8% Similarity=0.055 Sum_probs=68.1
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|||+|||+|.+++.+++.. ..+|+++|+++.+++.+++|.. ++.+...|..+..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------------------~v~~v~~D~~e~~---- 122 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------------------EAEWITSDVFEFE---- 122 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------------------CCEEEECchhhhc----
Confidence 4589999999999988776642 3589999999999999887631 1334444433221
Q ss_pred CCCCCCEEEEcccccCCCC--------------------hHHHHHHHHHHhccCCCCcccc
Q 038343 102 SAFVPEIILGADILYDRSC--------------------FPDLVRILAILLNRRKSVSSSR 142 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~--------------------~~~ll~~l~~ll~~~g~~~~~~ 142 (191)
...+||+|+++..+++... +..+++....+|+|+|....++
T Consensus 123 ~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 123 SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 2357999999888875321 3566677777888887555443
No 139
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.02 E-value=3.8e-09 Score=86.95 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=78.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+..+||||||+|...+.+|+... ..++++|+++.++..+.+++..+++. ++.+...|..... ..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-------------NV~~i~~DA~~ll-~~ 187 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-------------NLLIINYDARLLL-EL 187 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-------------cEEEEECCHHHhh-hh
Confidence 356899999999999998887643 48999999999999999999887754 4777777754332 22
Q ss_pred CCCCCCCEEEEcccccCCCC------hHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSC------FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~------~~~ll~~l~~ll~~~g~~~~ 140 (191)
++++++|.|+..-...++.. .+.+++.+.++|+|||....
T Consensus 188 ~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 188 LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 45678999987532222211 26899999999999986553
No 140
>PTZ00146 fibrillarin; Provisional
Probab=99.01 E-value=5.9e-09 Score=82.66 Aligned_cols=110 Identities=8% Similarity=0.000 Sum_probs=72.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+|||||||+|..+..++.. + ...|+++|+++.+++.+...++.. .++.....|.....
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---------------~NI~~I~~Da~~p~ 194 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---------------PNIVPIIEDARYPQ 194 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---------------CCCEEEECCccChh
Confidence 457889999999999999988876 3 248999999988775555433221 12444444443221
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCC
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
.-......+|+|++. + ..+.....++..++++|||+|...+...+.+
T Consensus 195 ~y~~~~~~vDvV~~D-v-a~pdq~~il~~na~r~LKpGG~~vI~ika~~ 241 (293)
T PTZ00146 195 KYRMLVPMVDVIFAD-V-AQPDQARIVALNAQYFLKNGGHFIISIKANC 241 (293)
T ss_pred hhhcccCCCCEEEEe-C-CCcchHHHHHHHHHHhccCCCEEEEEEeccc
Confidence 111122469999874 4 3455566777889999999998776444443
No 141
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.00 E-value=2.9e-09 Score=81.20 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=79.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe-ecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH-LPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~-ldw~~~~~ 98 (191)
..++|||+|.+.|..++.++.. . ..+++.+|.+++..+.+++|++..+.. .++.... +|+-+...
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~------------~~i~~~~~gdal~~l~ 126 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD------------DRIELLLGGDALDVLS 126 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc------------ceEEEEecCcHHHHHH
Confidence 6779999999999999977763 3 348999999999999999999999876 4466555 46654433
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
. ...++||+|+. | .+....+..++.+.++|+|||-
T Consensus 127 ~-~~~~~fDliFI-D--adK~~yp~~le~~~~lLr~GGl 161 (219)
T COG4122 127 R-LLDGSFDLVFI-D--ADKADYPEYLERALPLLRPGGL 161 (219)
T ss_pred h-ccCCCccEEEE-e--CChhhCHHHHHHHHHHhCCCcE
Confidence 2 33578999986 2 2567788999999999999973
No 142
>PLN02672 methionine S-methyltransferase
Probab=98.99 E-value=4.3e-09 Score=96.06 Aligned_cols=107 Identities=23% Similarity=0.172 Sum_probs=71.9
Q ss_pred cHHHHHHHHhhCCC-CCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCccc--ccc-c
Q 038343 6 SSLLLSEFILSFPE-IFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSL--LES-Y 80 (191)
Q Consensus 6 ~a~~L~~~l~~~~~-~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~--~~~-~ 80 (191)
-+..|.+.+...+. .+++.+|||||||+|.+++.+++.. ..+|+++|+++.+++.+++|++.|++...... ... .
T Consensus 101 eTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~ 180 (1082)
T PLN02672 101 WSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGK 180 (1082)
T ss_pred hHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccc
Confidence 35666776544432 2456799999999999999888754 35999999999999999999999865310000 000 0
Q ss_pred CCCCeeEEEeecCCCCCcCCCCCCCCCEEEEccc
Q 038343 81 EDPNVVQCVHLPWESASESGLSAFVPEIILGADI 114 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ 114 (191)
....++.+...||.+.... ...+||+||++..
T Consensus 181 ~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSNPP 212 (1082)
T PLN02672 181 TLLDRVEFYESDLLGYCRD--NNIELDRIVGCIP 212 (1082)
T ss_pred cccccEEEEECchhhhccc--cCCceEEEEECCC
Confidence 0113588888888654311 1136999998654
No 143
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.99 E-value=3e-09 Score=85.78 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=58.9
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEee-cCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHL-PWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~l-dw~~~~~ 98 (191)
++.+|||||||+|.+...++. ....+++++|+++.+++.+++|++.| ++. .++.+... +-.....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~------------~~I~~~~~~~~~~i~~ 181 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN------------GAIRLRLQKDSKAIFK 181 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc------------CcEEEEEccchhhhhh
Confidence 356899999999966665544 33348999999999999999999999 655 34544321 1111111
Q ss_pred CC-CCCCCCCEEEEcccccCCC
Q 038343 99 SG-LSAFVPEIILGADILYDRS 119 (191)
Q Consensus 99 ~~-~~~~~fDvIi~~d~ly~~~ 119 (191)
.. ....+||+|+|+..+|...
T Consensus 182 ~i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 182 GIIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred cccccCCceEEEEeCCCCcCcc
Confidence 00 1245899999998887554
No 144
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=4.7e-09 Score=80.60 Aligned_cols=126 Identities=13% Similarity=0.021 Sum_probs=81.3
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccc--cccCCCCe
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLL--ESYEDPNV 85 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~--~~~~~~~~ 85 (191)
..|.+++.+.. ..++.+||++|||.|.-++++|..|. +|+++|+++.+++.+.. .+++....... .......+
T Consensus 24 ~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 24 PLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred HHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCc
Confidence 34556654321 12467999999999999999999998 89999999999987632 33322110000 00001235
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+...|..+.... ....||.|+-.-++.+. +.....++.+.++|+|||....
T Consensus 99 v~~~~~D~~~l~~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 99 ITIYCGDFFALTAA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eEEEECcccCCCcc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 66666665543221 12479999977666543 4567889999999999986443
No 145
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.98 E-value=3.2e-09 Score=87.08 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=48.8
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
....|.+++.......++ +||||.||+|.+|+.+|.... +|+++|.++.+++.+++|++.|++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~ 244 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGID 244 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 345566666554443344 799999999999999999854 9999999999999999999999975
No 146
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.96 E-value=4.5e-09 Score=88.54 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=76.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-----CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-----ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-----~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+++.||++|||+|.++..+++.+ +.+|++++.++.+...+++.++.|+.. ++|++...|..+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~------------~~V~vi~~d~r~v 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG------------DKVTVIHGDMREV 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT------------TTEEEEES-TTTS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC------------CeEEEEeCcccCC
Confidence 57899999999999988776664 569999999999998888877888764 5789999988766
Q ss_pred CcCCCCCCCCCEEEE--cccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 97 SESGLSAFVPEIILG--ADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~--~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
... .+.|+||+ .+.+-+.+.....+...+++|+|+|...
T Consensus 254 ~lp----ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 254 ELP----EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp CHS----S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCC----CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 38999997 2233344567778899999999996443
No 147
>PRK04148 hypothetical protein; Provisional
Probab=98.96 E-value=4.9e-09 Score=73.86 Aligned_cols=99 Identities=17% Similarity=0.080 Sum_probs=68.6
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccH-HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGL-VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQ 87 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~-~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~ 87 (191)
.+++|+.++....++++|||+|||+|. ++..+++.|. .|+++|+++.+++.++++ . +.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~----------------~~ 61 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----G----------------LN 61 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----C----------------Ce
Confidence 467787776554567899999999995 8989999987 999999999988777654 2 34
Q ss_pred EEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 88 CVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 88 ~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
+...|+.++..+.. ..+|+|. ...-...+...+.++-+.-+
T Consensus 62 ~v~dDlf~p~~~~y--~~a~liy------sirpp~el~~~~~~la~~~~ 102 (134)
T PRK04148 62 AFVDDLFNPNLEIY--KNAKLIY------SIRPPRDLQPFILELAKKIN 102 (134)
T ss_pred EEECcCCCCCHHHH--hcCCEEE------EeCCCHHHHHHHHHHHHHcC
Confidence 56677665532211 2355554 44456666666666666554
No 148
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.95 E-value=8.9e-09 Score=82.82 Aligned_cols=107 Identities=12% Similarity=0.002 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE- 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~- 98 (191)
++.+|||||||+|..+..+++.. ..+|+++|+|++||+.+++++...... .++.....|..+...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~------------~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ------------LEVHGICADFTQPLAL 130 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC------------ceEEEEEEcccchhhh
Confidence 45789999999998888666553 248999999999999999887654311 235555666654211
Q ss_pred -CCCCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCcc
Q 038343 99 -SGLSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 -~~~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.........+++....+++.. ....+++.+.+.|+|||....
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111111233444445666543 466789999999999986543
No 149
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.94 E-value=7.1e-09 Score=76.48 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=59.6
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
....++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++... .++++...|..+..
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~---------------~~v~ii~~D~~~~~ 72 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA---------------DNLTVIHGDALKFD 72 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC---------------CCEEEEECchhcCC
Confidence 334466799999999999999888885 48999999999999999887431 24666676665442
Q ss_pred cCCCCCCCCCEEEEcccccCC
Q 038343 98 ESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~ 118 (191)
..+.+||.|+++ ..|+.
T Consensus 73 ---~~~~~~d~vi~n-~Py~~ 89 (169)
T smart00650 73 ---LPKLQPYKVVGN-LPYNI 89 (169)
T ss_pred ---ccccCCCEEEEC-CCccc
Confidence 223368999874 55654
No 150
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.94 E-value=1.2e-09 Score=86.64 Aligned_cols=105 Identities=16% Similarity=0.062 Sum_probs=74.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++++||++.|-||..++.++.-|+.+|+.+|.|..+++.+++|+..|++.. .++.+...|.-+.....-
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~-----------~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDL-----------DRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CC-----------TCEEEEES-HHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-----------cceEEEecCHHHHHHHHh
Confidence 688999999999999999999999899999999999999999999999753 346666655432211101
Q ss_pred CCCCCCEEEEcccccCC------CChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDR------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~------~~~~~ll~~l~~ll~~~g~ 137 (191)
..++||+||+-..-|.. .++..++..+.++|+|+|.
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEE
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 23589999984333322 2466788888899999873
No 151
>PRK00811 spermidine synthase; Provisional
Probab=98.93 E-value=7.1e-09 Score=82.68 Aligned_cols=107 Identities=15% Similarity=0.014 Sum_probs=72.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||+||||+|.++..+.+. +..+|+++|+++.+++.+++++........ ...++++...|.......
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~--------~d~rv~v~~~Da~~~l~~- 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAY--------DDPRVELVIGDGIKFVAE- 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccc--------cCCceEEEECchHHHHhh-
Confidence 4569999999999998877665 566999999999999999988754321100 013566666654322111
Q ss_pred CCCCCCCEEEEcccc--cCCC---ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADIL--YDRS---CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~l--y~~~---~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+|++ |.. +.+. ....+++.+++.|+|+|...
T Consensus 147 -~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 147 -TENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred -CCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 2358999997 321 1111 13677899999999998644
No 152
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.92 E-value=1.1e-08 Score=81.06 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=63.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC----CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA----SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~----~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+..+|||+|||+|..+..+++... ..++++|+++.+++.++++. .++.+...|..+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------------------~~~~~~~~d~~~l- 145 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------------------PQVTFCVASSHRL- 145 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------------------CCCeEEEeecccC-
Confidence 346899999999988887665421 27999999999999886542 1234444444332
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
.+.+++||+|++.. .+ ..++.+.++|+|+|....+
T Consensus 146 --p~~~~sfD~I~~~~---~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 146 --PFADQSLDAIIRIY---AP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred --CCcCCceeEEEEec---CC----CCHHHHHhhccCCCEEEEE
Confidence 23456899999743 22 2467889999999876554
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=98.92 E-value=7.6e-09 Score=79.56 Aligned_cols=93 Identities=6% Similarity=0.075 Sum_probs=65.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc----CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV----KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~----g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+.+|||+|||+|.+++.+++. ...+|+++|+++.+++.+++|+.. +.+...|.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~------------------~~~~~~D~~~~~ 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE------------------ATWINADALTTE 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC------------------CEEEEcchhccc
Confidence 3669999999999999977763 234899999999999999977521 233444433221
Q ss_pred cCCCCCCCCCEEEEcccccCCC------------ChHHHHHHHHHHhccCC
Q 038343 98 ESGLSAFVPEIILGADILYDRS------------CFPDLVRILAILLNRRK 136 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~------------~~~~ll~~l~~ll~~~g 136 (191)
.+.+||+||++..++... ....++....+++++|+
T Consensus 111 ----~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 111 ----FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred ----ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 135899999988877321 14457777777776664
No 154
>PLN02476 O-methyltransferase
Probab=98.90 E-value=7.5e-09 Score=81.80 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=77.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.+.++|||+|+|+|..++.++.. + ..+|+.+|.+++..+.+++|++..+.. .++++...+..+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~------------~~I~li~GdA~e~L~ 184 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS------------HKVNVKHGLAAESLK 184 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHH
Confidence 35679999999999999988763 2 237999999999999999999999875 467777766543221
Q ss_pred CC---CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SG---LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~---~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.. ...++||+|+. |. +.......++.+.++|++||-
T Consensus 185 ~l~~~~~~~~FD~VFI-Da--~K~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 185 SMIQNGEGSSYDFAFV-DA--DKRMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred HHHhcccCCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCCcE
Confidence 10 11357999987 32 345678889999999999974
No 155
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=5.7e-09 Score=73.73 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=65.9
Q ss_pred HhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 14 ILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
+......++|+.++|||||+|.+++..+..++..|.++|+++++|+...+|++...++ +.+.+.+.
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--------------idlLqcdi 105 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--------------IDLLQCDI 105 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--------------hheeeeec
Confidence 3344456799999999999999998888888889999999999999999998877654 34444444
Q ss_pred CCCCcCCCCCCCCCEEEEccccc
Q 038343 94 ESASESGLSAFVPEIILGADILY 116 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly 116 (191)
.+.. +..+.||..+.+..+-
T Consensus 106 ldle---~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 106 LDLE---LKGGIFDTAVINPPFG 125 (185)
T ss_pred cchh---ccCCeEeeEEecCCCC
Confidence 4332 2336799988866654
No 156
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.88 E-value=6.2e-08 Score=72.66 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=69.2
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
.+.+.........++.+|||+|||+|..+..+++.. ..+|+++|+++.+ .. ..+
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-------------~~i 74 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-------------ENV 74 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-------------CCc
Confidence 444444445555678899999999998888766642 3479999998743 11 124
Q ss_pred EEEeecCCCCCc-----CCCCCCCCCEEEEccccc-----CCC------ChHHHHHHHHHHhccCCCCcc
Q 038343 87 QCVHLPWESASE-----SGLSAFVPEIILGADILY-----DRS------CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 87 ~~~~ldw~~~~~-----~~~~~~~fDvIi~~d~ly-----~~~------~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.+...|+.+... .....++||+|++.-..+ ... ..+.+++.+.++|+|+|....
T Consensus 75 ~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 75 DFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred eEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 555556544210 012345799999843221 111 136789999999999986554
No 157
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.87 E-value=2.3e-08 Score=82.73 Aligned_cols=94 Identities=20% Similarity=0.156 Sum_probs=69.2
Q ss_pred CCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.+|||++||+|..++.+++ .++.+|+++|+++.+++.+++|++.|++. .+.+...|.......
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-------------~~~v~~~Da~~~l~~-- 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-------------NEKVFNKDANALLHE-- 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------ceEEEhhhHHHHHhh--
Confidence 45899999999999997765 45568999999999999999999999864 234555554322111
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
..+||+|+. |.+ ....+++...-+.++++|
T Consensus 123 -~~~fD~V~l-DP~---Gs~~~~l~~al~~~~~~g 152 (382)
T PRK04338 123 -ERKFDVVDI-DPF---GSPAPFLDSAIRSVKRGG 152 (382)
T ss_pred -cCCCCEEEE-CCC---CCcHHHHHHHHHHhcCCC
Confidence 246999998 653 445677777555677775
No 158
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.87 E-value=1e-08 Score=78.12 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=71.2
Q ss_pred HHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 13 FILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 13 ~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+.+.....++.+|||+|||+|..+..++.+ |. .+|+.+|.++...+.+++|+...+.. ++.+..
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-------------nv~~~~ 129 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-------------NVEVVV 129 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-------------SEEEEE
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-------------ceeEEE
Confidence 3334444668899999999999888888876 33 26999999999999999999988754 466666
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 91 LPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.|-.... ....+||.|+..-.... +-..+.+.|++||....
T Consensus 130 gdg~~g~---~~~apfD~I~v~~a~~~------ip~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 130 GDGSEGW---PEEAPFDRIIVTAAVPE------IPEALLEQLKPGGRLVA 170 (209)
T ss_dssp S-GGGTT---GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEE
T ss_pred cchhhcc---ccCCCcCEEEEeeccch------HHHHHHHhcCCCcEEEE
Confidence 6632221 12357999998655432 22456677899986553
No 159
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.86 E-value=5.9e-08 Score=73.28 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=68.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
...-|||+|||+|+.+..+...|. .++++|+|+.||+.+.+. +..+ .+.-.|.+... .+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~-e~eg-----------------dlil~DMG~Gl--pf 108 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVER-ELEG-----------------DLILCDMGEGL--PF 108 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHh-hhhc-----------------CeeeeecCCCC--CC
Confidence 345799999999999999999985 899999999999998751 2212 23456666443 35
Q ss_pred CCCCCCEEEEcccccCC---------C--ChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDR---------S--CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~---------~--~~~~ll~~l~~ll~~~g~ 137 (191)
..+.||-+|+-..+.+. + .+-.++.+|..+|+++++
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~r 155 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGAR 155 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCce
Confidence 67899998874444322 1 134457788888888864
No 160
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.85 E-value=4.1e-08 Score=80.98 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=72.3
Q ss_pred CCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.+|||+.||+|..|+.+++. |+++|++.|+++.+++.+++|++.|+.. ++.+...|.......
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-------------~~~v~~~Da~~~l~~- 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-------------NIEVPNEDAANVLRY- 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------cEEEEchhHHHHHHH-
Confidence 358999999999999987775 6789999999999999999999999753 345555554332211
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
...+||+|.. |. |. ...+++....+.++++|-
T Consensus 111 -~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~gl 142 (374)
T TIGR00308 111 -RNRKFHVIDI-DP-FG--TPAPFVDSAIQASAERGL 142 (374)
T ss_pred -hCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccCCE
Confidence 1246999987 77 42 345788888888887753
No 161
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.84 E-value=2.7e-09 Score=81.05 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.+.++|||+|+++|..++.++.. + ..+|+.+|.+++..+.++++++..+.. .++++...+..+...
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~------------~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD------------DRIEVIEGDALEVLP 111 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG------------GGEEEEES-HHHHHH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC------------CcEEEEEeccHhhHH
Confidence 35669999999999999988863 2 249999999999999999999998865 467777776543211
Q ss_pred C---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 99 S---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
. ....++||+|+. |. ........++.+.++|++||
T Consensus 112 ~l~~~~~~~~fD~VFi-Da--~K~~y~~y~~~~~~ll~~gg 149 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFI-DA--DKRNYLEYFEKALPLLRPGG 149 (205)
T ss_dssp HHHHTTTTTSEEEEEE-ES--TGGGHHHHHHHHHHHEEEEE
T ss_pred HHHhccCCCceeEEEE-cc--cccchhhHHHHHhhhccCCe
Confidence 1 111357999987 32 45667788888999999996
No 162
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.82 E-value=4.2e-08 Score=77.77 Aligned_cols=108 Identities=18% Similarity=0.028 Sum_probs=69.9
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
.++||+||||+|.++..+.+.. ..+|+++|+++.+++.+++++........ ..++++...|...... .
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~---------~~~v~i~~~D~~~~l~--~ 141 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD---------DPRVDLQIDDGFKFLA--D 141 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc---------CCceEEEECchHHHHH--h
Confidence 4599999999998887666654 56899999999999999988754321110 1234444433211100 0
Q ss_pred CCCCCCEEEEccc--ccCCCC--hHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADI--LYDRSC--FPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~--ly~~~~--~~~ll~~l~~ll~~~g~~~~~ 141 (191)
..++||+|++.-. ...... ...+++.++++|+|+|.....
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 1358999997322 111111 467789999999999875544
No 163
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.81 E-value=8.2e-08 Score=74.79 Aligned_cols=112 Identities=14% Similarity=0.019 Sum_probs=78.2
Q ss_pred hCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecC
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPW 93 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw 93 (191)
...+..+|.+|||-|.|+|.++..+++. +. .+|+..|..++..+.+++|++.+++. .++.+..-|.
T Consensus 34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~------------~~v~~~~~Dv 101 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD------------DNVTVHHRDV 101 (247)
T ss_dssp HHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC------------TTEEEEES-G
T ss_pred HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC------------CCceeEecce
Confidence 3445668999999999999999988863 32 49999999999999999999999875 4677888777
Q ss_pred CCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHh-ccCCCCccccccCC
Q 038343 94 ESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILL-NRRKSVSSSRKESS 146 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll-~~~g~~~~~~~~~~ 146 (191)
.+.......+..+|.|+. +.+.+...+..+.+.| ++||..+ .++|+
T Consensus 102 ~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~--~fsP~ 148 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRIC--CFSPC 148 (247)
T ss_dssp GCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEE--EEESS
T ss_pred ecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEE--EECCC
Confidence 432111111357898776 6677888899999999 7776433 33454
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.80 E-value=4.5e-08 Score=77.09 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+.+.+.+.....++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... .++.+.
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~---------------~~v~ii 80 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAA---------------GNVEII 80 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccC---------------CCEEEE
Confidence 334444444455778999999999999999888854 8999999999999998876431 246777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEccccc
Q 038343 90 HLPWESASESGLSAFVPEIILGADILY 116 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly 116 (191)
..|..+.. + ..||.|+++-..+
T Consensus 81 ~~D~~~~~---~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 81 EGDALKVD---L--PEFNKVVSNLPYQ 102 (258)
T ss_pred EeccccCC---c--hhceEEEEcCCcc
Confidence 77765432 1 2479999876544
No 165
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.2e-07 Score=69.56 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=55.1
Q ss_pred CCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+-+||||||+|+++.++++. + ...+.+||+||.+++..++.++.|+.. +.+..-|..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--------------~~~V~tdl~~~---- 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--------------IDVVRTDLLSG---- 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--------------cceeehhHHhh----
Confidence 457999999999998877764 2 348999999999999999999998843 44455554332
Q ss_pred CCCCCCCEEEEccc
Q 038343 101 LSAFVPEIILGADI 114 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ 114 (191)
+..++.|+++.+..
T Consensus 106 l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 106 LRNESVDVLVFNPP 119 (209)
T ss_pred hccCCccEEEECCC
Confidence 23367888887543
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.79 E-value=5.2e-08 Score=77.99 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=65.2
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+.......++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++..++.. .++++...
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~------------~~v~ii~~ 92 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLA------------SKLEVIEG 92 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCC------------CcEEEEEC
Confidence 3444444455778999999999999998888754 8999999999999999998765532 35777777
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCCC
Q 038343 92 PWESASESGLSAFVPEIILGADILYDRS 119 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~~ 119 (191)
|+.+.. + ..||+|+++ .-|+..
T Consensus 93 Dal~~~---~--~~~d~VvaN-lPY~Is 114 (294)
T PTZ00338 93 DALKTE---F--PYFDVCVAN-VPYQIS 114 (294)
T ss_pred CHhhhc---c--cccCEEEec-CCcccC
Confidence 765432 1 358988874 555543
No 167
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.78 E-value=1.8e-08 Score=76.19 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=69.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.++..|+|+.||.|..++.+++. .++.|++.|.+|.+++.+++|++.|+.. ..+.+...|..+...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~------------~~i~~~~~D~~~~~~- 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE------------NRIEVINGDAREFLP- 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T------------TTEEEEES-GGG----
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC------------CeEEEEcCCHHHhcC-
Confidence 46789999999999999988873 3458999999999999999999999876 467778888655432
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
...||-|++.. +.....++.....+++++|
T Consensus 167 ---~~~~drvim~l----p~~~~~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 167 ---EGKFDRVIMNL----PESSLEFLDAALSLLKEGG 196 (200)
T ss_dssp ---TT-EEEEEE------TSSGGGGHHHHHHHEEEEE
T ss_pred ---ccccCEEEECC----hHHHHHHHHHHHHHhcCCc
Confidence 46799999853 4445567888888888774
No 168
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.78 E-value=6.8e-08 Score=74.87 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
...++||||+|.|-++..++..- ++|++|+.|+.|...+++ .+.. .+...+|.+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg~~---------------vl~~~~w~~~----- 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KGFT---------------VLDIDDWQQT----- 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CCCe---------------EEehhhhhcc-----
Confidence 45689999999999998888874 489999999988655542 3321 2234556543
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.+||+|.|-.++-.-..+..+|+.+++.|+|+|...
T Consensus 149 -~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~li 185 (265)
T PF05219_consen 149 -DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLI 185 (265)
T ss_pred -CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEE
Confidence 2479999999999999999999999999999976544
No 169
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.77 E-value=4.9e-08 Score=77.45 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=61.8
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+.+.+.+.....++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++.. .++.+.
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----------------~~v~~i 92 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----------------DNLTII 92 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----------------CceEEE
Confidence 334444444445677999999999999998888876 899999999999999876532 246777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCC
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~ 118 (191)
..|+.+.... +..+|.|+++-. |+.
T Consensus 93 ~~D~~~~~~~---~~~~~~vv~NlP-Y~i 117 (272)
T PRK00274 93 EGDALKVDLS---ELQPLKVVANLP-YNI 117 (272)
T ss_pred EChhhcCCHH---HcCcceEEEeCC-ccc
Confidence 7777654321 111578887644 544
No 170
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.74 E-value=1.3e-07 Score=71.16 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=73.6
Q ss_pred cEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
+|||||||||.-+.++++. ..-...-+|.++..+..++..+...+..... ....+.+..-.|..........
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-------~P~~lDv~~~~w~~~~~~~~~~ 100 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-------PPLALDVSAPPWPWELPAPLSP 100 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-------CCeEeecCCCCCccccccccCC
Confidence 6999999999888866664 3347888999988888888877776654211 1112223333232221111234
Q ss_pred CCCCEEEEcccccCC--CChHHHHHHHHHHhccCCCC
Q 038343 104 FVPEIILGADILYDR--SCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~~ 138 (191)
.+||.|++..++|-. ...+.+++...++|+++|..
T Consensus 101 ~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L 137 (204)
T PF06080_consen 101 ESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLL 137 (204)
T ss_pred CCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEE
Confidence 689999999999944 56889999999999999753
No 171
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=2.4e-08 Score=76.27 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=72.3
Q ss_pred cEEEeCCCccHHHHHHHhcCC---CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC-cCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKA---SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS-ESG 100 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~---~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~-~~~ 100 (191)
+|||+|||.|.+...+.+-.. -+|++.|.++.+++..+++...+.. ++.....|...+. ...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~--------------~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES--------------RVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh--------------hhcccceeccchhccCC
Confidence 799999999977775544322 2899999999999999988765542 2333333333322 233
Q ss_pred CCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+++|+|++-=++- +++.....++.+.++|||||...
T Consensus 140 ~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~ll 180 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLL 180 (264)
T ss_pred CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEE
Confidence 4567899999866665 56778999999999999997533
No 172
>PLN02366 spermidine synthase
Probab=98.70 E-value=4.1e-07 Score=73.25 Aligned_cols=106 Identities=14% Similarity=0.010 Sum_probs=70.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||++|||.|.+...+++.. ..+|+.+|+++.+++.+++.+....... ...++++...|-..... .
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~---------~dpRv~vi~~Da~~~l~-~ 160 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGF---------DDPRVNLHIGDGVEFLK-N 160 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcccc---------CCCceEEEEChHHHHHh-h
Confidence 45799999999998888777763 4589999999999999998875422111 11456666665321111 1
Q ss_pred CCCCCCCEEEEcccccC--CC---ChHHHHHHHHHHhccCCCC
Q 038343 101 LSAFVPEIILGADILYD--RS---CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~--~~---~~~~ll~~l~~ll~~~g~~ 138 (191)
...++||+|++ |..-. +. ....+++.+++.|+|+|..
T Consensus 161 ~~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvl 202 (308)
T PLN02366 161 APEGTYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPGGVV 202 (308)
T ss_pred ccCCCCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCcEE
Confidence 12357999997 43211 11 1346789999999999853
No 173
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=1.1e-07 Score=74.23 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=75.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+.++|||||+++|..++.++.. + ..+++.+|.+++..+.++++++..+.. .+|.+...+..+....
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~------------~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA------------HKIDFREGPALPVLDQ 146 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------------CceEEEeccHHHHHHH
Confidence 4569999999999999987763 2 238999999999999999999988865 5677777765443221
Q ss_pred CC----CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 100 GL----SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 100 ~~----~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.. ..++||+|+. |. +.......++.+.++|++||-
T Consensus 147 l~~~~~~~~~fD~iFi-Da--dK~~Y~~y~~~~l~ll~~GGv 185 (247)
T PLN02589 147 MIEDGKYHGTFDFIFV-DA--DKDNYINYHKRLIDLVKVGGV 185 (247)
T ss_pred HHhccccCCcccEEEe-cC--CHHHhHHHHHHHHHhcCCCeE
Confidence 11 1258999987 32 355677778888899999973
No 174
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=1.8e-07 Score=75.73 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=76.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|.+|||+.||.|-+++.+|+.|..+|+++|+||.+++.+++|+++|+.. ..+.....|-......
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~------------~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE------------GRVEPILGDAREVAPE-- 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc------------ceeeEEeccHHHhhhc--
Confidence 58899999999999999999998867999999999999999999999976 4566777775544321
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+.+|-|++.- +.....++....++++++|.
T Consensus 254 -~~~aDrIim~~----p~~a~~fl~~A~~~~k~~g~ 284 (341)
T COG2520 254 -LGVADRIIMGL----PKSAHEFLPLALELLKDGGI 284 (341)
T ss_pred -cccCCEEEeCC----CCcchhhHHHHHHHhhcCcE
Confidence 15799999863 33455667777777777653
No 175
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.60 E-value=5.3e-07 Score=69.38 Aligned_cols=131 Identities=7% Similarity=-0.034 Sum_probs=86.2
Q ss_pred HHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccc--ccccCCCCe
Q 038343 8 LLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSL--LESYEDPNV 85 (191)
Q Consensus 8 ~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~--~~~~~~~~~ 85 (191)
..|.+++..... .++.+||..|||.|.-..+++..|. +|+++|+++.+++.+.+ .|++...... .........
T Consensus 30 p~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 30 EFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred HHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH---HcCCCcceecccccceeccCc
Confidence 345555544322 2567999999999999999999998 79999999999988754 2222110000 000011245
Q ss_pred eEEEeecCCCCCcCCCCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCCCccccc
Q 038343 86 VQCVHLPWESASESGLSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKSVSSSRK 143 (191)
Q Consensus 86 i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~~~~~~~ 143 (191)
+.+...|+-+........++||+|+-.-++. .++......+.+.++|+|+|....++.
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 7777777665432111225799987544444 566788889999999999987776654
No 176
>PRK01581 speE spermidine synthase; Validated
Probab=98.60 E-value=4.9e-07 Score=73.82 Aligned_cols=103 Identities=21% Similarity=0.163 Sum_probs=66.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHH---HhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLE---LNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~---~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++||++|||+|.....+.+.. ..+|+++|+++++++.++.... .++... ...++++...|-.+..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~---------~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF---------FDNRVNVHVCDAKEFL 220 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC---------CCCceEEEECcHHHHH
Confidence 34699999999998777666653 4699999999999999985211 111110 0135666555433221
Q ss_pred cCCCCCCCCCEEEEcccccCCC-------ChHHHHHHHHHHhccCCC
Q 038343 98 ESGLSAFVPEIILGADILYDRS-------CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~-------~~~~ll~~l~~ll~~~g~ 137 (191)
.. ..++||+|++ |+ .++. .-..+++.+++.|+|+|-
T Consensus 221 ~~--~~~~YDVIIv-Dl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV 263 (374)
T PRK01581 221 SS--PSSLYDVIII-DF-PDPATELLSTLYTSELFARIATFLTEDGA 263 (374)
T ss_pred Hh--cCCCccEEEE-cC-CCccccchhhhhHHHHHHHHHHhcCCCcE
Confidence 11 2357999997 43 2221 125688999999999984
No 177
>PRK03612 spermidine synthase; Provisional
Probab=98.60 E-value=1.9e-07 Score=80.39 Aligned_cols=108 Identities=20% Similarity=0.118 Sum_probs=70.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||++|||+|.....+.+.+. .+|+++|+|+++++.+++|...+...... -...++++...|-.+....
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~------~~dprv~vi~~Da~~~l~~- 369 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGA------LDDPRVTVVNDDAFNWLRK- 369 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccc------cCCCceEEEEChHHHHHHh-
Confidence 456999999999998887777654 69999999999999999853222111000 0013566665553321111
Q ss_pred CCCCCCCEEEEcccccCCC-------ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRS-------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~-------~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+|++. .. ++. ..+.+++.+++.|+|+|...
T Consensus 370 -~~~~fDvIi~D-~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 370 -LAEKFDVIIVD-LP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred -CCCCCCEEEEe-CC-CCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence 23589999984 32 221 12458899999999998644
No 178
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.5e-07 Score=76.09 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=58.5
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
++.+|-.++..+...-.++.++|+.||||.+|+.+++. +++|+++++++.+++-|+.|++.|++.
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis 431 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS 431 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc
Confidence 46788888888877778899999999999999998877 569999999999999999999999987
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.57 E-value=3e-07 Score=71.56 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=67.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+..+|||||+|+|..+..+++..+ -+++..|. |++++.+++ . .++.+...|+.+.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~------------~rv~~~~gd~f~~---- 155 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------A------------DRVEFVPGDFFDP---- 155 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------T------------TTEEEEES-TTTC----
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------c------------cccccccccHHhh----
Confidence 456899999999999886666533 38999999 889888876 1 4688999998733
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccC
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILLNRR 135 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~ 135 (191)
++ . +|+|+...++|+.. ....+|+.++..|+|+
T Consensus 156 ~P-~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 156 LP-V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp CS-S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred hc-c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 22 2 99999999998654 4667899999999998
No 180
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.56 E-value=2.4e-07 Score=75.25 Aligned_cols=128 Identities=11% Similarity=0.046 Sum_probs=70.8
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCe
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNV 85 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 85 (191)
-+..+..|+.......++.+|||||||-|.--.-....+...|+++|++...++.+++..+.......... ....-.
T Consensus 46 Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~---~~~~f~ 122 (331)
T PF03291_consen 46 KSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQ---YRFDFI 122 (331)
T ss_dssp HHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HT---SEECCE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccc---ccccch
Confidence 34455555543333337789999999977544433445677999999999999999887733221100000 000011
Q ss_pred eEEEeecCCCCC-cCCCCC--CCCCEEEEcccccC----CCChHHHHHHHHHHhccCC
Q 038343 86 VQCVHLPWESAS-ESGLSA--FVPEIILGADILYD----RSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 86 i~~~~ldw~~~~-~~~~~~--~~fDvIi~~d~ly~----~~~~~~ll~~l~~ll~~~g 136 (191)
..+...|-.... ...+.. .+||+|=+--.+|+ ......+++.+...|+|||
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 222333322111 111232 48999998666664 3457778999999999997
No 181
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.56 E-value=7.6e-07 Score=71.87 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=86.1
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.||..+.+..+..+|..|||=-||||.+-+.+..+|+ +++++|++..|+.-++.|++..+++ ...+
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~-------------~~~~ 249 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE-------------DYPV 249 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcC-------------ceeE
Confidence 5677777767777899999999999999999999998 9999999999999999999988754 1222
Q ss_pred Ee-ecCCCCCcCCCCCCCCCEEEEcccccCCCC----------hHHHHHHHHHHhccCCC
Q 038343 89 VH-LPWESASESGLSAFVPEIILGADILYDRSC----------FPDLVRILAILLNRRKS 137 (191)
Q Consensus 89 ~~-ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~----------~~~ll~~l~~ll~~~g~ 137 (191)
.. +|....+ +.+.++|-|++ |.-|-... ...+++++.++|+++|.
T Consensus 250 ~~~~Da~~lp---l~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~ 305 (347)
T COG1041 250 LKVLDATNLP---LRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGR 305 (347)
T ss_pred EEecccccCC---CCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcE
Confidence 22 2443332 44457999876 88884432 77889999999999763
No 182
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.52 E-value=1.8e-07 Score=68.31 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=54.9
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
.|+|+.||.|..++.+|+... +|+++|+++.-++.++.|++..+.. .++.+...||.+.........
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~------------~~I~~i~gD~~~~~~~~~~~~ 68 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVA------------DNIDFICGDFFELLKRLKSNK 68 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-G------------GGEEEEES-HHHHGGGB----
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEeCCHHHHHhhccccc
Confidence 699999999999999999865 8999999999999999999999865 578999999876533211111
Q ss_pred CCCEEEEcc
Q 038343 105 VPEIILGAD 113 (191)
Q Consensus 105 ~fDvIi~~d 113 (191)
.+|+|+++.
T Consensus 69 ~~D~vFlSP 77 (163)
T PF09445_consen 69 IFDVVFLSP 77 (163)
T ss_dssp --SEEEE--
T ss_pred cccEEEECC
Confidence 289999754
No 183
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.49 E-value=1.4e-06 Score=63.21 Aligned_cols=124 Identities=13% Similarity=0.050 Sum_probs=84.9
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
+-|++-.|++-+...-....++.|||+|.|||++.-.+.+.|. ..+++++++++....+.+....
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------------- 95 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------------- 95 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-------------
Confidence 4467777888777655555788999999999999987777664 4899999999998877654322
Q ss_pred CCCCeeEEEeecCCCCC--cCCCCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcccccc
Q 038343 81 EDPNVVQCVHLPWESAS--ESGLSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSSSRKE 144 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~--~~~~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~~~~~ 144 (191)
..+.+.|-.+.. ..+..+..||.|+++=.+-..+. --.+++.+...|..||....+.-.
T Consensus 96 -----~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 96 -----VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred -----ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 122333322221 12234567999999877766554 445688888888888766554433
No 184
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.49 E-value=1.1e-06 Score=69.10 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=58.8
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
.+.+.+.....++.+|||+|||+|.++..+++.+. .|+++|.++.+++.++.+.... .++.+..
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~---------------~~v~v~~ 81 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY---------------ERLEVIE 81 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC---------------CcEEEEE
Confidence 33444444445678999999999999999998875 7999999999999998776321 2466666
Q ss_pred ecCCCCCcCCCCCCCCC---EEEEcccccC
Q 038343 91 LPWESASESGLSAFVPE---IILGADILYD 117 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fD---vIi~~d~ly~ 117 (191)
.|..+... ..|| +|+++ .-|+
T Consensus 82 ~D~~~~~~-----~~~d~~~~vvsN-lPy~ 105 (253)
T TIGR00755 82 GDALKVDL-----PDFPKQLKVVSN-LPYN 105 (253)
T ss_pred CchhcCCh-----hHcCCcceEEEc-CChh
Confidence 66654332 1355 66664 4454
No 185
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.48 E-value=1.4e-06 Score=69.49 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCcEEEeCCCcc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCCCeeEEEeecCCCCCcC-
Q 038343 23 NKSCFEVGSGVG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDPNVVQCVHLPWESASES- 99 (191)
Q Consensus 23 ~~~VLElG~GtG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~- 99 (191)
..++||+|+|.. +..+..++...-++++||+++..++.+++|++.| .+. .+|.+....=......
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~------------~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE------------SRIELRKQKNPDNIFDG 170 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T------------TTEEEEE--ST-SSTTT
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc------------cceEEEEcCCccccchh
Confidence 458999999955 6666655543339999999999999999999999 665 4566654432111111
Q ss_pred -CCCCCCCCEEEEcccccCCCC
Q 038343 100 -GLSAFVPEIILGADILYDRSC 120 (191)
Q Consensus 100 -~~~~~~fDvIi~~d~ly~~~~ 120 (191)
......||+.+|+..+|....
T Consensus 171 i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 171 IIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp STT--S-EEEEEE-----SS--
T ss_pred hhcccceeeEEecCCccccChh
Confidence 112347999999999997653
No 186
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=1.7e-06 Score=66.33 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccc---------------cc---
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLL---------------ES--- 79 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~---------------~~--- 79 (191)
..+.++.+||+||-+|.+++.+++ .|+..+.++|+++..++.|+++++.-.-.. ..+. +.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~-~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHE-TEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccccccc-ccccCCCccccccccccccccccc
Confidence 346778999999999999997666 678899999999999999998875432110 0000 00
Q ss_pred -----cCCCCeeEEEe----ecCCCCCcCCCCCCCCCEEEEccccc------CCCChHHHHHHHHHHhccCCC
Q 038343 80 -----YEDPNVVQCVH----LPWESASESGLSAFVPEIILGADILY------DRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 80 -----~~~~~~i~~~~----ldw~~~~~~~~~~~~fDvIi~~d~ly------~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+...++.+.. ++-.+.. +.....||+|+|-.+-- +.+-+..+++.+.++|.|||.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred cccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE
Confidence 00011111110 0000000 12345899999854432 344578889999999999974
No 187
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.42 E-value=4.4e-07 Score=69.64 Aligned_cols=124 Identities=15% Similarity=0.027 Sum_probs=83.0
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCC--cccccccCCCC
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTD--TSLLESYEDPN 84 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~--~~~~~~~~~~~ 84 (191)
...|.+|+.. ....++.+||..|||.|.-...++..|. +|+++|+++.+++.+.+ .++.... ...........
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFE---ENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHH---HCTTEEECTTCTTEEEETTS
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHH---HhccCCCcccccceeeecCC
Confidence 4567777766 2233566999999999999999999997 99999999999988742 2221100 00000001234
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEccccc--CCCChHHHHHHHHHHhccCCC
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILY--DRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly--~~~~~~~ll~~l~~ll~~~g~ 137 (191)
+|.+...|.-...... .++||+|+=.-++. .++..+.-.+.+.++|+|+|.
T Consensus 98 ~i~~~~gDfF~l~~~~--~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 98 RITIYCGDFFELPPED--VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp SEEEEES-TTTGGGSC--HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred ceEEEEcccccCChhh--cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 6777888876543221 24799999655444 567889999999999999987
No 188
>PLN02823 spermine synthase
Probab=98.38 E-value=5.5e-06 Score=67.53 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
..++||.||+|.|.....+.+. +..+|+++|+++.+++.+++.+..+..... ..++++...|--....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~---------dprv~v~~~Da~~~L~-- 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFC---------DKRLELIINDARAELE-- 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccccc---------CCceEEEEChhHHHHh--
Confidence 3468999999999888866654 456899999999999999988765431110 1355655544322211
Q ss_pred CCCCCCCEEEEcccccCCC--------ChHHHHH-HHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYDRS--------CFPDLVR-ILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--------~~~~ll~-~l~~ll~~~g~ 137 (191)
...++||+|+. |+. ++. ....+++ .+++.|+|+|-
T Consensus 172 ~~~~~yDvIi~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gv 215 (336)
T PLN02823 172 KRDEKFDVIIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGI 215 (336)
T ss_pred hCCCCccEEEe-cCC-CccccCcchhhccHHHHHHHHHHhcCCCcE
Confidence 12357999996 432 221 1345677 89999999973
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.36 E-value=4.4e-06 Score=62.44 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=68.7
Q ss_pred cEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
+++|+|+|.|.+|+.++-..+ .+++++|....=+..++.-+..-++. ++.+.....++ ....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-------------nv~v~~~R~E~----~~~~ 113 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-------------NVEVINGRAEE----PEYR 113 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-------------SEEEEES-HHH----TTTT
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-------------CEEEEEeeecc----cccC
Confidence 799999999999998877644 48999999888777777777666654 46777776655 1234
Q ss_pred CCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 104 FVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+||+|++= -...+..+++....+++++|.
T Consensus 114 ~~fd~v~aR----Av~~l~~l~~~~~~~l~~~G~ 143 (184)
T PF02527_consen 114 ESFDVVTAR----AVAPLDKLLELARPLLKPGGR 143 (184)
T ss_dssp T-EEEEEEE----SSSSHHHHHHHHGGGEEEEEE
T ss_pred CCccEEEee----hhcCHHHHHHHHHHhcCCCCE
Confidence 689999983 234688999999999999973
No 190
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=64.63 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=73.7
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
..+-|||+|+|.+++.+++. +.+|++++.+|.....+++|+..++.. ++++...|-.+.. +
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-------------n~evv~gDA~~y~---f-- 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-------------NWEVVVGDARDYD---F-- 94 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-------------ceEEEeccccccc---c--
Confidence 47999999999999999988 779999999999999999998777653 5677776644332 1
Q ss_pred CCCCEEEE--cccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 104 FVPEIILG--ADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 104 ~~fDvIi~--~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
...|+|+| -|+..-.+..-++++.+-++||..+...
T Consensus 95 e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 35788887 3444444556677788888999886543
No 191
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=6.8e-07 Score=70.00 Aligned_cols=128 Identities=21% Similarity=0.229 Sum_probs=78.5
Q ss_pred CcccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 1 CSIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 1 ~~~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
+.+|+++..|..++.+++...+++++.++|||.+...+..++.+. .|...+-...+.-....+...+. ....
T Consensus 69 ~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~-~v~~~~~~~~~~~~l~~~~~~~~-~~~~------ 140 (262)
T KOG2497|consen 69 LSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPD-CVVTLDSLRCAGLLLEEIILLSR-DLSL------ 140 (262)
T ss_pred cccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhccc-ceecCCccCcHHHHHHHHHhccc-cccc------
Confidence 468999999999999999888899999999999998877777643 34333332233323333322222 1100
Q ss_pred CCCCeeEEEeecCCCCCcCC-CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 81 EDPNVVQCVHLPWESASESG-LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~-~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..+-+...+.|......+ .....+|+|+++|++|. ....++++.+..+|..+.+..
T Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~~~~~ 197 (262)
T KOG2497|consen 141 --EVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRWRGTG 197 (262)
T ss_pred --cccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhccccc
Confidence 001111122221111000 11124999999999999 888888888888776664443
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.28 E-value=2.8e-05 Score=66.15 Aligned_cols=101 Identities=10% Similarity=0.041 Sum_probs=67.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-cC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-VK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.++.+|||++||.|.=+..++. ++ ...+++.|+++.-++.+++|++..++. ++.+...|-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-------------nv~v~~~D~~~~~- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-------------NVALTHFDGRVFG- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCchhhhh-
Confidence 3778999999999976665554 32 248999999999999999999998764 3444444422111
Q ss_pred CCCCCCCCCEEEE----c--ccccCCCC----------------hHHHHHHHHHHhccCC
Q 038343 99 SGLSAFVPEIILG----A--DILYDRSC----------------FPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~~~~~~~fDvIi~----~--d~ly~~~~----------------~~~ll~~l~~ll~~~g 136 (191)
......||.|+. | .++...++ -..+|....++|+|||
T Consensus 178 -~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG 236 (470)
T PRK11933 178 -AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGG 236 (470)
T ss_pred -hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 112246999994 2 12221111 2567778888999997
No 193
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.27 E-value=8.3e-06 Score=60.78 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=61.2
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC-e---------EEEEcCChHHHHHHHHHHHHhcCCCCccccc
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS-K---------VTLTDGDHLTLANMRSNLELNQLSTDTSLLE 78 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~-~---------v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~ 78 (191)
.||..+.......++..|||--||+|.+-+.++..+.. . +++.|+++.+++.+++|++..+..
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~------- 87 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE------- 87 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-------
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-------
Confidence 45555555444556779999999999888876665432 2 789999999999999999987764
Q ss_pred ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccC
Q 038343 79 SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYD 117 (191)
Q Consensus 79 ~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~ 117 (191)
..+.+...|..+.. +..+.+|+|++. .-|.
T Consensus 88 -----~~i~~~~~D~~~l~---~~~~~~d~Ivtn-PPyG 117 (179)
T PF01170_consen 88 -----DYIDFIQWDARELP---LPDGSVDAIVTN-PPYG 117 (179)
T ss_dssp -----GGEEEEE--GGGGG---GTTSBSCEEEEE---ST
T ss_pred -----CceEEEecchhhcc---cccCCCCEEEEC-cchh
Confidence 35666766655443 334689999984 5554
No 194
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.26 E-value=9.1e-06 Score=61.38 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=68.7
Q ss_pred cEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
.+||||||.|-..+.+|...+ ..++++|+....+..+...+...++. ++.+...|........+.+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-------------Nv~~~~~da~~~l~~~~~~ 86 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-------------NVRFLRGDARELLRRLFPP 86 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-------------SEEEEES-CTTHHHHHSTT
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-------------ceEEEEccHHHHHhhcccC
Confidence 799999999988776666533 48999999999999888888877654 5777777755433223445
Q ss_pred CCCCEEEE--cccccCC------CChHHHHHHHHHHhccCCC
Q 038343 104 FVPEIILG--ADILYDR------SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 104 ~~fDvIi~--~d~ly~~------~~~~~ll~~l~~ll~~~g~ 137 (191)
+++|-|.. .|..... -..+.+++.+.++|+|||.
T Consensus 87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~ 128 (195)
T PF02390_consen 87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGE 128 (195)
T ss_dssp TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEE
T ss_pred CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCE
Confidence 67887764 3332211 1467899999999999974
No 195
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.25 E-value=4e-06 Score=61.29 Aligned_cols=83 Identities=11% Similarity=-0.097 Sum_probs=61.9
Q ss_pred EEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHH
Q 038343 49 TLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRIL 128 (191)
Q Consensus 49 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l 128 (191)
+++|.+++||+.++++.+...... ..++.+...|..+.+ +.+++||+|+++.++++..+...+++.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~----------~~~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC----------YKCIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC----------CCceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHH
Confidence 478999999999987654322110 124677777765432 4556899999999999999999999999
Q ss_pred HHHhccCCCCcccccc
Q 038343 129 AILLNRRKSVSSSRKE 144 (191)
Q Consensus 129 ~~ll~~~g~~~~~~~~ 144 (191)
.++|||||...++...
T Consensus 68 ~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 68 YRVLKPGSRVSILDFN 83 (160)
T ss_pred HHHcCcCeEEEEEECC
Confidence 9999999876654433
No 196
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.24 E-value=1.5e-06 Score=66.29 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=75.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
...++|||||.|.+...+...+..+++.+|.+-.|++.++.. +.+. +....+--. .+.-.+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~----------------i~~~~~v~D-EE~Ldf~ 134 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPS----------------IETSYFVGD-EEFLDFK 134 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCc----------------eEEEEEecc-hhccccc
Confidence 347999999999999988888888999999999998877642 1122 222222211 1112256
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
++++|+||.+--+++..+++.-...++..|||+|...
T Consensus 135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccch
Confidence 6899999999999999999999999999999997544
No 197
>PHA01634 hypothetical protein
Probab=98.20 E-value=1.3e-05 Score=55.58 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=48.1
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
.+++++|+|+|++.|-.+++++..||++|++.+.++...+..++|++.|.+-
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~ 77 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC 77 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee
Confidence 3578999999999999999999999999999999999999999999998754
No 198
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=1.5e-05 Score=60.85 Aligned_cols=95 Identities=24% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+++++|+|+|.|.+|+.+|-..+ .+|+.+|....=+..++.-...-++. ++++.....++....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-------------nv~i~~~RaE~~~~~-- 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-------------NVEIVHGRAEEFGQE-- 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-------------CeEEehhhHhhcccc--
Confidence 57999999999999998874433 37999998777666666655555543 466666665544321
Q ss_pred CCCC-CCEEEEcccccCCCChHHHHHHHHHHhccCCCC
Q 038343 102 SAFV-PEIILGADILYDRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 102 ~~~~-fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
.. ||+|.+- -......+++....+++++|+.
T Consensus 133 --~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~ 164 (215)
T COG0357 133 --KKQYDVVTSR----AVASLNVLLELCLPLLKVGGGF 164 (215)
T ss_pred --cccCcEEEee----hccchHHHHHHHHHhcccCCcc
Confidence 23 9999873 3456888999999999998864
No 199
>PRK00536 speE spermidine synthase; Provisional
Probab=98.17 E-value=3.5e-05 Score=60.64 Aligned_cols=97 Identities=12% Similarity=-0.050 Sum_probs=67.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.++||=+|.|-|.+...+.+... +|+.+|+++++++.+++-+.......+ ..++.+.. |-.. .
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~---------DpRv~l~~--~~~~----~ 135 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKN---------NKNFTHAK--QLLD----L 135 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhc---------CCCEEEee--hhhh----c
Confidence 356999999999999998888754 999999999999999985443221111 13444443 2111 1
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..++||+||. |..+. +.+.+.+++.|+|+|-..
T Consensus 136 ~~~~fDVIIv-Ds~~~----~~fy~~~~~~L~~~Gi~v 168 (262)
T PRK00536 136 DIKKYDLIIC-LQEPD----IHKIDGLKRMLKEDGVFI 168 (262)
T ss_pred cCCcCCEEEE-cCCCC----hHHHHHHHHhcCCCcEEE
Confidence 2257999996 65544 567789999999997433
No 200
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.6e-05 Score=60.92 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=76.3
Q ss_pred ccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCC
Q 038343 5 PSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPN 84 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 84 (191)
.++..|...+....-..+++.+||+|+.||-++..+.+.|+++|+++|..-.-+ .-.++.+. .
T Consensus 62 RG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql---~~kLR~d~--------------r 124 (245)
T COG1189 62 RGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL---HWKLRNDP--------------R 124 (245)
T ss_pred cHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc---CHhHhcCC--------------c
Confidence 457888888887777789999999999999999999999999999999853222 11111111 1
Q ss_pred eeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 85 VVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 85 ~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
-+..+..+........+.. ..|+|++ |+= .-....++..+..++++++...
T Consensus 125 V~~~E~tN~r~l~~~~~~~-~~d~~v~-DvS--FISL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 125 VIVLERTNVRYLTPEDFTE-KPDLIVI-DVS--FISLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred EEEEecCChhhCCHHHccc-CCCeEEE-Eee--hhhHHHHHHHHHHhcCCCceEE
Confidence 2223333333332222322 6788887 432 2347788899999999886544
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.13 E-value=2.5e-05 Score=60.99 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...+...|||+|.|||.++..+...|+ +|+++++++.++..+++..+--... .++++...|.-+.+
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~------------~kLqV~~gD~lK~d- 120 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKS------------GKLQVLHGDFLKTD- 120 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCcc------------ceeeEEecccccCC-
Confidence 344667899999999999999998876 9999999999999998765433222 56778888765442
Q ss_pred CCCCCCCCCEEEEc
Q 038343 99 SGLSAFVPEIILGA 112 (191)
Q Consensus 99 ~~~~~~~fDvIi~~ 112 (191)
...||++|++
T Consensus 121 ----~P~fd~cVsN 130 (315)
T KOG0820|consen 121 ----LPRFDGCVSN 130 (315)
T ss_pred ----Ccccceeecc
Confidence 1358888873
No 202
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.8e-05 Score=60.86 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=60.7
Q ss_pred HHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEee
Q 038343 12 EFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHL 91 (191)
Q Consensus 12 ~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~l 91 (191)
+.+....+..++.+|||+|+|.|.++..+++.+. +|+++++|+.+++.+++..... .++.+...
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---------------~n~~vi~~ 83 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY---------------DNLTVING 83 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc---------------cceEEEeC
Confidence 3444444455678999999999999999999976 8999999999999988765411 35666666
Q ss_pred cCCCCCcCCCCCCCCCEEEEcccccCC
Q 038343 92 PWESASESGLSAFVPEIILGADILYDR 118 (191)
Q Consensus 92 dw~~~~~~~~~~~~fDvIi~~d~ly~~ 118 (191)
|.-+.....+. .++.|+++ .-|+.
T Consensus 84 DaLk~d~~~l~--~~~~vVaN-lPY~I 107 (259)
T COG0030 84 DALKFDFPSLA--QPYKVVAN-LPYNI 107 (259)
T ss_pred chhcCcchhhc--CCCEEEEc-CCCcc
Confidence 65433211111 56777774 55554
No 203
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.08 E-value=2.1e-05 Score=56.03 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=41.9
Q ss_pred cEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
.++|+|||.|..++.+++.+.. +|+++|.++.+.+.+++|++.|+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence 4899999999999988887764 8999999999999999999998753
No 204
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.05 E-value=0.00026 Score=54.63 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=70.3
Q ss_pred ccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 3 IWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 3 ~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
+++.+..=+.|+.+... ..|++||=+|=. =++|+.++.. .+++|+.+|+++..++.+++.++..++.
T Consensus 26 T~eT~~~Ra~~~~~~gd-L~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---------- 93 (243)
T PF01861_consen 26 TPETTLRRAALMAERGD-LEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---------- 93 (243)
T ss_dssp -HHHHHHHHHHHHHTT--STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------------
T ss_pred cHHHHHHHHHHHHhcCc-ccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc----------
Confidence 45556666667766543 578999999733 2666655543 2459999999999999999999988854
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
+++...|..+..+..+. ++||+++. |..|..+-+.-++..--..|+..
T Consensus 94 ----i~~~~~DlR~~LP~~~~-~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~ 141 (243)
T PF01861_consen 94 ----IEAVHYDLRDPLPEELR-GKFDVFFT-DPPYTPEGLKLFLSRGIEALKGE 141 (243)
T ss_dssp ----EEEE---TTS---TTTS-S-BSEEEE----SSHHHHHHHHHHHHHTB-ST
T ss_pred ----eEEEEecccccCCHHHh-cCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCC
Confidence 77788888777655443 58999887 88888877777777777777754
No 205
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.05 E-value=2.2e-05 Score=62.66 Aligned_cols=108 Identities=8% Similarity=-0.071 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC--
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES-- 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~-- 99 (191)
++..+++||||-|---+-.-+.|.+.++++|+.+..++.+++..+...-... +..-...+...|-......
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~-------~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK-------KFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh-------cccceeEEEEeccchhHHHHh
Confidence 5668999999998766666677778999999999999999876543321100 0001233344443221111
Q ss_pred -CCCCCCCCEEEEcccccC----CCChHHHHHHHHHHhccCC
Q 038343 100 -GLSAFVPEIILGADILYD----RSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 -~~~~~~fDvIi~~d~ly~----~~~~~~ll~~l~~ll~~~g 136 (191)
+..+.+||+|=+-=++|+ ....+-+++.+.+.|+|||
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG 231 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc
Confidence 123445999987656653 3557778999999999997
No 206
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.01 E-value=0.00023 Score=57.82 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=66.3
Q ss_pred cHHHHHHHHhhCC-------CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccc
Q 038343 6 SSLLLSEFILSFP-------EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLE 78 (191)
Q Consensus 6 ~a~~L~~~l~~~~-------~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~ 78 (191)
++..|.+.+.... ...+|+++|||||++|..+..+.+.|+ +|+++|..+ + ...+..+
T Consensus 188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l----~~~L~~~---------- 251 (357)
T PRK11760 188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-M----AQSLMDT---------- 251 (357)
T ss_pred HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-c----CHhhhCC----------
Confidence 4566766655432 235789999999999999999999998 999999643 2 2222222
Q ss_pred ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 79 SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 79 ~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
.++.....+-..... ....+|+|++ |+...+ ..+.+.+.+++..+
T Consensus 252 -----~~V~h~~~d~fr~~p---~~~~vDwvVc-Dmve~P---~rva~lm~~Wl~~g 296 (357)
T PRK11760 252 -----GQVEHLRADGFKFRP---PRKNVDWLVC-DMVEKP---ARVAELMAQWLVNG 296 (357)
T ss_pred -----CCEEEEeccCcccCC---CCCCCCEEEE-ecccCH---HHHHHHHHHHHhcC
Confidence 234444333211111 1357999987 776544 46778888888777
No 207
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.00 E-value=1.4e-05 Score=60.42 Aligned_cols=113 Identities=13% Similarity=0.043 Sum_probs=63.4
Q ss_pred CCCcEEEeCCCcc--HHHH--HHHhc---CC---CeEEEEcCChHHHHHHHHHH-HHhcCCCCc-------cccc-----
Q 038343 22 SNKSCFEVGSGVG--LVGI--CLAHV---KA---SKVTLTDGDHLTLANMRSNL-ELNQLSTDT-------SLLE----- 78 (191)
Q Consensus 22 ~~~~VLElG~GtG--~~~~--~la~~---g~---~~v~~tD~~~~~l~~~~~n~-~~n~~~~~~-------~~~~----- 78 (191)
+..+|+-.||+|| ..++ .+... .. -++++||+|+.+|+.+++-+ ..+.+.... ....
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4469999999999 3444 44441 11 28999999999999987521 011110000 0000
Q ss_pred --ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccC--CCChHHHHHHHHHHhccCCC
Q 038343 79 --SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYD--RSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 79 --~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~--~~~~~~ll~~l~~ll~~~g~ 137 (191)
...-...+.+...+.-+. ....+.||+|+|-+|+-+ .+....+++.+.+.|+|||.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~---~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP---DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEE
T ss_pred eEChHHcCceEEEecccCCC---CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCE
Confidence 011125678888877661 123468999999887753 45678899999999999973
No 208
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.99 E-value=4.7e-05 Score=58.73 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=71.8
Q ss_pred CcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
..+||||||.|-.-+.+|+..+ ..++++|+....+..+.+.+...++. ++.+...|-......-.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-------------Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-------------NLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-------------cEEEEcCCHHHHHHhcCC
Confidence 4799999999988777777654 48999999888888888888777752 466666654433322234
Q ss_pred CCCCCEEEE--cccccCCC------ChHHHHHHHHHHhccCCCC
Q 038343 103 AFVPEIILG--ADILYDRS------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 103 ~~~fDvIi~--~d~ly~~~------~~~~ll~~l~~ll~~~g~~ 138 (191)
+++.|-|.. .|...-.. ..+.+++.+.+.|++||..
T Consensus 117 ~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l 160 (227)
T COG0220 117 DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVL 160 (227)
T ss_pred CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEE
Confidence 447777764 34433221 3678999999999999753
No 209
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.97 E-value=0.00014 Score=65.12 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=74.0
Q ss_pred HHHHHHhhCCCC-CCCCcEEEeCCCccHHHHHHHhcC-------------------------------------------
Q 038343 9 LLSEFILSFPEI-FSNKSCFEVGSGVGLVGICLAHVK------------------------------------------- 44 (191)
Q Consensus 9 ~L~~~l~~~~~~-~~~~~VLElG~GtG~~~~~la~~g------------------------------------------- 44 (191)
.||.-+...... .++..++|-+||+|.+.+.++...
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 444444443333 356799999999998888665421
Q ss_pred CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC----CC
Q 038343 45 ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR----SC 120 (191)
Q Consensus 45 ~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~----~~ 120 (191)
..+++++|+++.+++.++.|+..+++. ..+.+...|+.+.... ...++||+|+++..+-.. ..
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~------------~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~ 322 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVA------------ELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPA 322 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCC------------cceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHH
Confidence 116999999999999999999999875 4577777777654321 122469999987554321 22
Q ss_pred hHHHHHHHHHHhc
Q 038343 121 FPDLVRILAILLN 133 (191)
Q Consensus 121 ~~~ll~~l~~ll~ 133 (191)
...+-+.+-..++
T Consensus 323 l~~lY~~lg~~lk 335 (702)
T PRK11783 323 LIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555555
No 210
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=6.5e-05 Score=56.60 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=69.3
Q ss_pred CCCCCcEEEeCCCccHHHHHHHh-cCCC--eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAH-VKAS--KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~-~g~~--~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
..+|.+.||+|+|||.++..++. .|+. .++++|.-++.++..++|+...-..-+.. . .-....+.+...|-...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~-~--~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESS-S--KLKRGELSIVVGDGRKG 156 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhh-h--hhccCceEEEeCCcccc
Confidence 56899999999999987776664 3432 34899999999999999987653210000 0 00012344444443222
Q ss_pred CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 97 SESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
. .+..+||-|.+. .....+.+.+-..|+++|+...
T Consensus 157 ~---~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 157 Y---AEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred C---CccCCcceEEEc------cCccccHHHHHHhhccCCeEEE
Confidence 1 234589998764 3455666777788888886553
No 211
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.92 E-value=7.9e-06 Score=62.48 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=77.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+|.+|||-..|-|.+++.+.+.|+.+|+-++.++.+|+.++.|-=..++. ...+++...|-.+.. ..+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~-----------~~~i~iilGD~~e~V-~~~ 201 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF-----------EIAIKIILGDAYEVV-KDF 201 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc-----------ccccEEecccHHHHH-hcC
Confidence 68899999999999999999999999999999999998886542111111 123455555433221 235
Q ss_pred CCCCCCEEEEcccccCC---CChHHHHHHHHHHhccCCCCccccccCC
Q 038343 102 SAFVPEIILGADILYDR---SCFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
.+.+||+||--..-+.. -..+.+-+.+.++|+|||+.-.....|.
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 67789998742221111 1256788999999999997655554443
No 212
>PRK10742 putative methyltransferase; Provisional
Probab=97.92 E-value=7.8e-05 Score=57.94 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=59.6
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC-CCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE-DPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~-~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
+|||+-+|+|..++.++..|+ +|+++|.++.+...++++++.-....+. .. -..++++...|-.+.... ..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~-----~~~~~~ri~l~~~da~~~L~~-~~- 162 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEI-----GGWLQERLQLIHASSLTALTD-IT- 162 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhcccc-----chhhhceEEEEeCcHHHHHhh-CC-
Confidence 899999999999999999999 5999999999999999998873211000 00 002355544443222111 12
Q ss_pred CCCCEEEEcccccCCCChH
Q 038343 104 FVPEIILGADILYDRSCFP 122 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~ 122 (191)
.+||+|+. |..|-...-.
T Consensus 163 ~~fDVVYl-DPMfp~~~ks 180 (250)
T PRK10742 163 PRPQVVYL-DPMFPHKQKS 180 (250)
T ss_pred CCCcEEEE-CCCCCCCccc
Confidence 36999996 8888554433
No 213
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.92 E-value=0.00017 Score=57.47 Aligned_cols=102 Identities=13% Similarity=-0.005 Sum_probs=67.2
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
++||-||.|.|.+...+.+.. ..+++.+|+++.+++.+++-+........ ..++.+...|-.+.... .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~---------dpRv~i~i~Dg~~~v~~--~ 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD---------DPRVEIIIDDGVEFLRD--C 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC---------CCceEEEeccHHHHHHh--C
Confidence 599999999998888777664 56999999999999999876543321100 13444444432211111 1
Q ss_pred CCCCCEEEEcccccCCC-----ChHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYDRS-----CFPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~-----~~~~ll~~l~~ll~~~g~ 137 (191)
..+||+||. |+--... .-..+.+.+++.|+++|-
T Consensus 147 ~~~fDvIi~-D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi 185 (282)
T COG0421 147 EEKFDVIIV-DSTDPVGPAEALFTEEFYEGCRRALKEDGI 185 (282)
T ss_pred CCcCCEEEE-cCCCCCCcccccCCHHHHHHHHHhcCCCcE
Confidence 137999997 3321111 147899999999999984
No 214
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.91 E-value=5.1e-05 Score=60.56 Aligned_cols=113 Identities=19% Similarity=0.126 Sum_probs=70.9
Q ss_pred CCcEEEeCCCcc--HHHH--HHHhcC-----CCeEEEEcCChHHHHHHHHHHH----HhcCCCCc----cccc-------
Q 038343 23 NKSCFEVGSGVG--LVGI--CLAHVK-----ASKVTLTDGDHLTLANMRSNLE----LNQLSTDT----SLLE------- 78 (191)
Q Consensus 23 ~~~VLElG~GtG--~~~~--~la~~g-----~~~v~~tD~~~~~l~~~~~n~~----~n~~~~~~----~~~~------- 78 (191)
..+|+-.||+|| ..++ .+.... .-+|++||+|+.+|+.+++-+- ..++.... ....
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 3444 443321 1279999999999999986420 01110000 0000
Q ss_pred ---ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCCC
Q 038343 79 ---SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 79 ---~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g~ 137 (191)
...-...+.+...+..+... ...+.||+|+|-+++.+. +....+++.+.+.|+|||.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~--~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~ 257 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQW--AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGL 257 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCC--ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 01112456666666654211 123689999998877544 5688999999999999984
No 215
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.89 E-value=0.0002 Score=56.56 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCcc--H--HHHHHHhcC------CCeEEEEcCChHHHHHHHHHHHH-----hcCCCCc----ccc--c--
Q 038343 22 SNKSCFEVGSGVG--L--VGICLAHVK------ASKVTLTDGDHLTLANMRSNLEL-----NQLSTDT----SLL--E-- 78 (191)
Q Consensus 22 ~~~~VLElG~GtG--~--~~~~la~~g------~~~v~~tD~~~~~l~~~~~n~~~-----n~~~~~~----~~~--~-- 78 (191)
...+|+-.||+|| - +++.+...+ .-+|++||+|..+|+.|+.-+=. .++.... ... +
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3569999999999 3 444444433 13899999999999988753211 1111000 000 0
Q ss_pred ---ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccc-c-CCCChHHHHHHHHHHhccCC
Q 038343 79 ---SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADIL-Y-DRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 79 ---~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~l-y-~~~~~~~ll~~l~~ll~~~g 136 (191)
++.-...|.+...+...... ..+.||+|+|=+|+ | +.+.-..+++.+...|+|||
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 01123456666666544331 33579999997765 4 55678899999999999997
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.87 E-value=4.3e-05 Score=60.36 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=66.3
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
+++.+.+..+..++..|||+|+|+|.++..+.+.+ ++|+++|.++...+.+++....+ .++++.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~---------------~~~~vi 81 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN---------------PNVEVI 81 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC---------------SSEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc---------------ccceee
Confidence 44444444444478899999999999999998887 59999999999998888765421 357777
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHH
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAIL 131 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l 131 (191)
..|.-+.............|+++ .-| ....+++..+-.+
T Consensus 82 ~~D~l~~~~~~~~~~~~~~vv~N-lPy--~is~~il~~ll~~ 120 (262)
T PF00398_consen 82 NGDFLKWDLYDLLKNQPLLVVGN-LPY--NISSPILRKLLEL 120 (262)
T ss_dssp ES-TTTSCGGGHCSSSEEEEEEE-ETG--TGHHHHHHHHHHH
T ss_pred ecchhccccHHhhcCCceEEEEE-ecc--cchHHHHHHHhhc
Confidence 77765543221112234566664 555 2334555555443
No 217
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.87 E-value=4.9e-05 Score=57.50 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=79.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+|.+||++|=|-|++...+.......-+.++.+|++++.++.+.-... .++.+....|++... .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--------------~nViil~g~WeDvl~-~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--------------ENVIILEGRWEDVLN-T 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--------------cceEEEecchHhhhc-c
Confidence 3688999999999999888887777778889999999988876543322 568888999998754 3
Q ss_pred CCCCCCCEEEEcccc-cCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADIL-YDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~l-y~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
+.++.||-|+- |.+ .+-++...+-+.+-+||||+|...
T Consensus 165 L~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 165 LPDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred ccccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 56677998874 444 334567777888899999997543
No 218
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.0003 Score=57.80 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=70.4
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC----------------------------------------eE
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS----------------------------------------KV 48 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~----------------------------------------~v 48 (191)
-||.-+.......++..++|-=||+|.+.+.+|.++.. .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 35555555555566778999999999999988877531 37
Q ss_pred EEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEccccc
Q 038343 49 TLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILY 116 (191)
Q Consensus 49 ~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly 116 (191)
++.|+++.+++.++.|+...+.. ..|.+.+.|....... + ..+|+||++. -|
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~------------d~I~f~~~d~~~l~~~-~--~~~gvvI~NP-PY 309 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVG------------DLIEFKQADATDLKEP-L--EEYGVVISNP-PY 309 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCC------------ceEEEEEcchhhCCCC-C--CcCCEEEeCC-Cc
Confidence 79999999999999999999876 5788888887655321 1 5799999864 45
No 219
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.84 E-value=3.3e-05 Score=60.45 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=67.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||-||.|.|.....+.+.. ..+++++|+++.+++.+++-+........ ..++++...|-......
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~---------d~r~~i~~~Dg~~~l~~- 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLD---------DPRVRIIIGDGRKFLKE- 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGG---------STTEEEEESTHHHHHHT-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccC---------CCceEEEEhhhHHHHHh-
Confidence 46799999999998888777764 46999999999999999887655432110 13555555442111111
Q ss_pred CCCCCCCEEEEcccccC---C--CChHHHHHHHHHHhccCCC
Q 038343 101 LSAFVPEIILGADILYD---R--SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~---~--~~~~~ll~~l~~ll~~~g~ 137 (191)
....+||+|+. |..-. . -....+++.+++.|+|+|-
T Consensus 146 ~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv 186 (246)
T PF01564_consen 146 TQEEKYDVIIV-DLTDPDGPAPNLFTREFYQLCKRRLKPDGV 186 (246)
T ss_dssp SSST-EEEEEE-ESSSTTSCGGGGSSHHHHHHHHHHEEEEEE
T ss_pred ccCCcccEEEE-eCCCCCCCcccccCHHHHHHHHhhcCCCcE
Confidence 11127999997 33221 1 1246889999999999974
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.82 E-value=5.8e-05 Score=57.39 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=54.5
Q ss_pred CCCCCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
...++...+|||||.|-+-+ ++...++++.+++++.+...+.++...+....... ........+.+...|+-+..
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~----~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMK----HYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHH----HCTB---EEEEECS-TTTHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHH----HhhcccccceeeccCccccH
Confidence 34467799999999996655 44456777899999998877766654433221000 00001245666666654321
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
.....-...|+|+++...|+++....+.+ +..-|++|
T Consensus 115 ~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~-~~~~lk~G 151 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTCFDPDLNLALAE-LLLELKPG 151 (205)
T ss_dssp HHHHHGHC-SEEEE--TTT-HHHHHHHHH-HHTTS-TT
T ss_pred hHhhhhcCCCEEEEeccccCHHHHHHHHH-HHhcCCCC
Confidence 10000024799999998887665554433 33344555
No 221
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.0015 Score=53.92 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=65.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC---CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK---ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g---~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+|.+|||+.++.|.=+..++.+. ...|++.|.++.=++.+++|++..+.. ++.+...|-....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-------------nv~~~~~d~~~~~ 221 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-------------NVIVVNKDARRLA 221 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------------ceEEEeccccccc
Confidence 367899999999885444444332 125799999999999999999998865 2344444422221
Q ss_pred cCCCCCCCCCEEEE------cccccCCC----------------ChHHHHHHHHHHhccCC
Q 038343 98 ESGLSAFVPEIILG------ADILYDRS----------------CFPDLVRILAILLNRRK 136 (191)
Q Consensus 98 ~~~~~~~~fDvIi~------~d~ly~~~----------------~~~~ll~~l~~ll~~~g 136 (191)
.......+||.|+. ..++...+ ....+|....++|||||
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG 282 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGG 282 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11112235999995 33332111 14566777888888886
No 222
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.79 E-value=0.0007 Score=53.67 Aligned_cols=104 Identities=11% Similarity=0.040 Sum_probs=74.6
Q ss_pred CCCcEEEeCCCccHHHH-HHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGLVGI-CLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~-~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...+|||+.||.|--=+ .+.... ..++.+.|+++..++..++-++.+++. ..+++...|-.+...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~------------~i~~f~~~dAfd~~~ 202 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE------------DIARFEQGDAFDRDS 202 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc------------cceEEEecCCCCHhH
Confidence 45599999999994433 444443 359999999999999999999999876 344777777544322
Q ss_pred CCCCCCCCCEEEEcccccCCCC---hHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSC---FPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~---~~~ll~~l~~ll~~~g~ 137 (191)
-.-....++++|.+.++...++ +...++-+..++.|+|.
T Consensus 203 l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~ 244 (311)
T PF12147_consen 203 LAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGY 244 (311)
T ss_pred hhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcE
Confidence 1112346899999988776665 44556777788888863
No 223
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.77 E-value=5.6e-05 Score=57.45 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
...+.||.|||.|-++- .|... ..+|.++|..+..++.+++.+..... ....+......+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~-------------~v~~~~~~gLQ~f~--- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNP-------------RVGEFYCVGLQDFT--- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGC-------------CEEEEEES-GGG-----
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCC-------------CcceEEecCHhhcc---
Confidence 45589999999998886 44555 67999999999999999876544221 11222332222221
Q ss_pred CCCCCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCccccccCC
Q 038343 101 LSAFVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
....+||+|.+-.|+-|.. ++-.+|+.++..|+|+| .++.+...
T Consensus 118 P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G--~IvvKEN~ 163 (218)
T PF05891_consen 118 PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNG--VIVVKENV 163 (218)
T ss_dssp --TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEE--EEEEEEEE
T ss_pred CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCc--EEEEEecC
Confidence 1235899999999988764 46678999999999985 34444443
No 224
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00057 Score=53.58 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=77.3
Q ss_pred hhCCCCCCCCcEEEeCCCccHHHHHHHhcC-C-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec
Q 038343 15 LSFPEIFSNKSCFEVGSGVGLVGICLAHVK-A-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP 92 (191)
Q Consensus 15 ~~~~~~~~~~~VLElG~GtG~~~~~la~~g-~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld 92 (191)
.+..+..+|.+|||-|.|+|.++.++++.- + .+++-.|+++.-.+.+.+..+..++. .++.+..-|
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~------------~~vt~~hrD 165 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG------------DNVTVTHRD 165 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC------------cceEEEEee
Confidence 334455689999999999999999888752 2 48999999887777777777777754 456666666
Q ss_pred CCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCC
Q 038343 93 WESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKG 148 (191)
Q Consensus 93 w~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~ 148 (191)
....- ....+..+|.|+. +.+.+...+-.+.++|+.+|. ....++||-+
T Consensus 166 Vc~~G-F~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~-r~csFSPCIE 214 (314)
T KOG2915|consen 166 VCGSG-FLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGG-RLCSFSPCIE 214 (314)
T ss_pred cccCC-ccccccccceEEE-----cCCChhhhhhhhHHHhhhcCc-eEEeccHHHH
Confidence 54321 1122456777654 455555566666667777764 4445677643
No 225
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.76 E-value=7.5e-05 Score=59.82 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=39.1
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
.++..+||.+||.|.-+..+++.. ..+|++.|.++.+++.+++.+..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 367799999999999888777663 24899999999999999887643
No 226
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.76 E-value=8.1e-05 Score=61.80 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=68.8
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
.|||+|.|||++++++++.|+.+|++.+.=..|.+.+++....|+.. .+|.++.-.-.+... ....
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S------------dkI~vInkrStev~v--g~~~ 134 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS------------DKINVINKRSTEVKV--GGSS 134 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc------------cceeeeccccceeee--cCcc
Confidence 68999999999999999999999999998788999999999988865 445554432211110 0112
Q ss_pred CCCEEEEccccc---CCCChHHHHHHHHHHhccCCCC
Q 038343 105 VPEIILGADILY---DRSCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 105 ~fDvIi~~d~ly---~~~~~~~ll~~l~~ll~~~g~~ 138 (191)
+.|+++..+..- -...++.+-.....|++++.+.
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~ 171 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKT 171 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCee
Confidence 356666543322 1234666667777788888543
No 227
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.71 E-value=0.00045 Score=54.94 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=56.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+...+|||+|||+|.....+... ...+++++|.++.+++..+.-++... .. ....|....
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-~~----------------~~~~~~~~~ 93 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-NN----------------RNAEWRRVL 93 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-cc----------------ccchhhhhh
Confidence 456779999999999655443332 23589999999999998877554322 10 000111110
Q ss_pred c-CCCCCCCCCEEEEcccccCCCChHHHHHHHHHH
Q 038343 98 E-SGLSAFVPEIILGADILYDRSCFPDLVRILAIL 131 (191)
Q Consensus 98 ~-~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l 131 (191)
. ...+-...|+|+++.++-.... +...+.++.+
T Consensus 94 ~~~~~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~L 127 (274)
T PF09243_consen 94 YRDFLPFPPDDLVIASYVLNELPS-AARAELVRSL 127 (274)
T ss_pred hcccccCCCCcEEEEehhhhcCCc-hHHHHHHHHH
Confidence 0 0011123599999999987766 5445555554
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.66 E-value=0.00019 Score=51.29 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-----cCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-----VKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-----~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
.+...|+|+|||.|.++..++. ....+|+++|.++..++.+.+..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4667999999999999998888 333499999999999888887766655
No 229
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.64 E-value=1.1e-05 Score=60.73 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
...++||||+|.|-++..++..- .+|++|+.|..|...+++. .-| ....++|.+..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk-~yn------------------Vl~~~ew~~t~---- 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK-NYN------------------VLTEIEWLQTD---- 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc-CCc------------------eeeehhhhhcC----
Confidence 34689999999999988877763 4899999999888777642 111 12356675432
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
-+||+|.|-.++-.-.+.-.+++.|+.+|+|..+..++
T Consensus 168 --~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 168 --VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred --ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 47999999999888888999999999999996444433
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.63 E-value=3.3e-05 Score=58.55 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=74.1
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-C
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG-L 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~-~ 101 (191)
-..|+|..||.|-..+..+..++ .|+++|++|.-+..+++|++..++. .+|.+++.||-+..... +
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~------------~rItFI~GD~ld~~~~lq~ 161 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVP------------DRITFICGDFLDLASKLKA 161 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCC------------ceeEEEechHHHHHHHHhh
Confidence 34799999999988887777777 8999999999999999999999987 58999999997654321 2
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
....+|+|..+...-.+.....-+-.|...+.|.
T Consensus 162 ~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 162 DKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred hhheeeeeecCCCCCCcchhhhhhhhhhhhcchh
Confidence 2335778887666555554444444555555554
No 231
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.00041 Score=53.03 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=73.4
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+..+++||||.=||..++..|.. ...+|++.|+++...+...+-++..+.. .+|.++...-.+..
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~------------~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD------------HKITFIEGPALESL 138 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc------------ceeeeeecchhhhH
Confidence 346779999999999777755543 1238999999999999998887777755 56666665543322
Q ss_pred cC---CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 98 ES---GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 98 ~~---~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.+ ..+.+.||+++. | .+..+.......+-+|+|+||-
T Consensus 139 d~l~~~~~~~tfDfaFv-D--adK~nY~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFV-D--ADKDNYSNYYERLLRLLRVGGV 178 (237)
T ss_pred HHHHhcCCCCceeEEEE-c--cchHHHHHHHHHHHhhcccccE
Confidence 11 124568999986 2 2445566788888999999973
No 232
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.54 E-value=0.0015 Score=51.57 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=72.3
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCC------ccccc-----------c-----
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTD------TSLLE-----------S----- 79 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~------~~~~~-----------~----- 79 (191)
.+.+||==|||.|-++.-+|++|. .+.+.|.|-.|+-.. +.-.|..... +.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 456899999999999999999998 899999987776443 3333431110 00000 0
Q ss_pred -------cCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 80 -------YEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 80 -------~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.....++.....|+.+........++||.|+.+--|--..++-..+++|.++|||||...
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 011234555555554333222224689999986222234456777999999999998554
No 233
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.53 E-value=0.00038 Score=52.97 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=50.7
Q ss_pred EEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 26 CFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 26 VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
|.|+||--|.+++.+.+.|.. +++++|+++..++.+++|++.+++. .++.+...|=-.. ++.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~------------~~i~~rlgdGL~~----l~~~ 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE------------DRIEVRLGDGLEV----LKPG 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T------------TTEEEEE-SGGGG------GG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc------------ccEEEEECCcccc----cCCC
Confidence 689999999999999988754 8999999999999999999998865 4566666552111 2222
Q ss_pred -CCCEEEEccc
Q 038343 105 -VPEIILGADI 114 (191)
Q Consensus 105 -~fDvIi~~d~ 114 (191)
..|.|+.+.+
T Consensus 65 e~~d~ivIAGM 75 (205)
T PF04816_consen 65 EDVDTIVIAGM 75 (205)
T ss_dssp G---EEEEEEE
T ss_pred CCCCEEEEecC
Confidence 2677776543
No 234
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.51 E-value=0.00034 Score=56.46 Aligned_cols=120 Identities=11% Similarity=0.087 Sum_probs=68.8
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh--------cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccC
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH--------VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYE 81 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~--------~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 81 (191)
+++++.......++.+|+|-.||+|.+-+.+.+ ....++++.|+++.++..++.|+..++....
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~-------- 105 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS-------- 105 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB--------
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc--------
Confidence 444444433334566899999999977665444 1334899999999999999999877764421
Q ss_pred CCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--C-------------------ChHHHHHHHHHHhccCCCCcc
Q 038343 82 DPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR--S-------------------CFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 82 ~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~--~-------------------~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...+...|.-.... .....+||+|+++.++-.. . ..-.++....+.|+++|+...
T Consensus 106 ---~~~i~~~d~l~~~~-~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 106 ---NINIIQGDSLENDK-FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp ---GCEEEES-TTTSHS-CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ---cccccccccccccc-cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 12334444321111 1123579999986554322 0 011467777888899886554
Q ss_pred c
Q 038343 141 S 141 (191)
Q Consensus 141 ~ 141 (191)
+
T Consensus 182 I 182 (311)
T PF02384_consen 182 I 182 (311)
T ss_dssp E
T ss_pred E
Confidence 3
No 235
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.50 E-value=0.00054 Score=59.35 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=37.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhcC---------CCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVK---------ASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g---------~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
...+|||.+||+|.+.+.++... ...+++.|+++.++..++.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 34589999999997777554321 1378999999999999999887654
No 236
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.46 E-value=0.00089 Score=57.75 Aligned_cols=104 Identities=14% Similarity=0.027 Sum_probs=70.7
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.+..+||||||.|-..+.+|...+ ..++++|+....+..+.+.+...++. ++.+...++... ...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-------------N~~~~~~~~~~~-~~~ 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-------------NFLLFPNNLDLI-LND 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-------------eEEEEcCCHHHH-HHh
Confidence 355899999999987777776644 48999999888887777666665543 455555443211 122
Q ss_pred CCCCCCCEEEE--cccccCCC------ChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILG--ADILYDRS------CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~--~d~ly~~~------~~~~ll~~l~~ll~~~g~~~ 139 (191)
++++++|-|.. .|...... ..+.+++.+.++|+|||...
T Consensus 413 ~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 413 LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 45567888765 44443221 36789999999999997544
No 237
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.37 E-value=0.001 Score=50.64 Aligned_cols=103 Identities=14% Similarity=-0.053 Sum_probs=66.7
Q ss_pred ccHHHHHHHHhhCCCCC----CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCccccccc
Q 038343 5 PSSLLLSEFILSFPEIF----SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESY 80 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~----~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 80 (191)
+++.+|.+|+....... ...++||+||=+.-... +..+.-.|+.+|+++.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~------------------------ 83 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ------------------------ 83 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcc--cccCceeeEEeecCCC------------------------
Confidence 47889999987643222 23699999987543222 2233336999998641
Q ss_pred CCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCC---hHHHHHHHHHHhccCCC
Q 038343 81 EDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSC---FPDLVRILAILLNRRKS 137 (191)
Q Consensus 81 ~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~---~~~ll~~l~~ll~~~g~ 137 (191)
.-.+.+.|+-+.+....+.++||+|.+|=|+-+.++ ....++...++|+++|.
T Consensus 84 ----~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 84 ----HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred ----CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 112345555443222224568999999999987665 45678888889999987
No 238
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.33 E-value=0.0058 Score=42.51 Aligned_cols=99 Identities=17% Similarity=0.088 Sum_probs=60.4
Q ss_pred EEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 26 CFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 26 VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
++|+|||+|... .+..... ..++++|.++.++...+..... ... ..+.+...++... ...+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~-~~~~~~ 116 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL------------GLVDFVVADALGG-VLPFED 116 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC------------CceEEEEeccccC-CCCCCC
Confidence 999999999765 3344322 2788899999888874433322 111 0134444444331 011222
Q ss_pred -CCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 104 -FVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 104 -~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
..||++......+... ...++..+.+.++++|....
T Consensus 117 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 117 SASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred CCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEE
Confidence 3799994443433344 88999999999999765443
No 239
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.13 E-value=0.00025 Score=55.66 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=68.4
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcC-CCCccc------c-ccc-------CCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQL-STDTSL------L-ESY-------EDP 83 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~-~~~~~~------~-~~~-------~~~ 83 (191)
...+|.++||+|||+-+..+..+.....+++++|+.+..++.+++-++..+. +-.... . ... ...
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3456789999999987665544444466999999999999888876543211 000000 0 000 001
Q ss_pred CeeE-EEeecCCCCCcCCC---CCCCCCEEEEccccc----CCCChHHHHHHHHHHhccCCCCc
Q 038343 84 NVVQ-CVHLPWESASESGL---SAFVPEIILGADILY----DRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i~-~~~ldw~~~~~~~~---~~~~fDvIi~~d~ly----~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
..|+ +...|..+..+-.. ...+||+|+++-|+. +.+.+...++.+.++|||||...
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1222 44455544332211 123599999987776 34557778888999999998544
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.05 E-value=0.0096 Score=45.60 Aligned_cols=114 Identities=9% Similarity=-0.005 Sum_probs=65.3
Q ss_pred HHHHHHhhC---CCCCCCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 9 LLSEFILSF---PEIFSNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 9 ~L~~~l~~~---~~~~~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
.|+..+... ....+|.+||=||+.+|.+--.++.. | ...|++++.++...+.+-.-++..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------------- 121 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------------- 121 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---------------
Confidence 344444432 33457889999999999665555543 4 248999999998876665333322
Q ss_pred CeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 84 NVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
.++--.--|-..+..=...-+..|+|++ |+- .+...+-+....+.+||++|...
T Consensus 122 ~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 122 PNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp TTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEE
T ss_pred CceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEE
Confidence 1233233332222110111236788776 553 45667888899999999997543
No 241
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.004 Score=47.13 Aligned_cols=108 Identities=13% Similarity=0.045 Sum_probs=67.8
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCC--eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCC
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKAS--KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDP 83 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~--~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 83 (191)
++..|.+...++.-..++.+|+||||-.|..+.++++.... .|+++|+.|-- . .
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~-------------~ 84 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P-------------I 84 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c-------------C
Confidence 46667666666633446789999999999999988875332 49999996521 1 1
Q ss_pred CeeEEEeecCCCCCcC-----CCCCCCCCEEEEcccccCC------------CChHHHHHHHHHHhccCCCC
Q 038343 84 NVVQCVHLPWESASES-----GLSAFVPEIILGADILYDR------------SCFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 84 ~~i~~~~ldw~~~~~~-----~~~~~~fDvIi~~d~ly~~------------~~~~~ll~~l~~ll~~~g~~ 138 (191)
..+.+.+.|....... .+...++|+|++ |.--.. ......+.....+|+++|..
T Consensus 85 ~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~f 155 (205)
T COG0293 85 PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSF 155 (205)
T ss_pred CCceEEeeeccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeE
Confidence 2366777777655321 133445799885 332211 12344566666788888753
No 242
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.02 E-value=0.0049 Score=46.77 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=50.2
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEE
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCV 89 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~ 89 (191)
..+||...+ +...|-|+|||.+.++..+. .+. +|...|.-. .|. .+.
T Consensus 63 iI~~l~~~~---~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva-----------~n~-----------------~Vt 109 (219)
T PF05148_consen 63 IIEWLKKRP---KSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA-----------PNP-----------------RVT 109 (219)
T ss_dssp HHHHHCTS----TTS-EEEES-TT-HHHHH---S----EEEEESS------------SST-----------------TEE
T ss_pred HHHHHHhcC---CCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC-----------CCC-----------------CEE
Confidence 445554333 45689999999998875433 222 688888732 121 234
Q ss_pred eecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 90 HLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 90 ~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
..|..+.+ +++++.|++|.+=.+.. .++...++...++||++|.
T Consensus 110 acdia~vP---L~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~ 153 (219)
T PF05148_consen 110 ACDIANVP---LEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGI 153 (219)
T ss_dssp ES-TTS-S-----TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEE
T ss_pred EecCccCc---CCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcE
Confidence 45554332 45678999998554444 4689999999999999973
No 243
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.00 E-value=0.0023 Score=52.75 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++..++++|||.|-+..+.+..+...+++.|.++.-+...........+.. +..+..-+..+. .
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~------------k~~~~~~~~~~~---~ 173 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDN------------KCNFVVADFGKM---P 173 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhh------------hcceehhhhhcC---C
Confidence 4566899999999999988888776689999998766654443332222221 111212222221 2
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
++++.||.+-+.|+..+.+....+++.+.+.++|||..+
T Consensus 174 fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 174 FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEE
Confidence 456789999999999999999999999999999998766
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.98 E-value=0.023 Score=43.37 Aligned_cols=76 Identities=17% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
+.++.|+||--|.+..++.+.+ ++.+++.|.++..++.+.+|++.+++. .++++..+|--... -
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~------------~~i~vr~~dgl~~l---~ 81 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS------------ERIDVRLGDGLAVL---E 81 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc------------ceEEEeccCCcccc---C
Confidence 4469999999999999887765 458999999999999999999999876 56777777643221 1
Q ss_pred CCCCCCEEEEcc
Q 038343 102 SAFVPEIILGAD 113 (191)
Q Consensus 102 ~~~~fDvIi~~d 113 (191)
.+..+|+|+.+.
T Consensus 82 ~~d~~d~ivIAG 93 (226)
T COG2384 82 LEDEIDVIVIAG 93 (226)
T ss_pred ccCCcCEEEEeC
Confidence 223688887654
No 245
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.87 E-value=0.012 Score=47.74 Aligned_cols=106 Identities=19% Similarity=0.118 Sum_probs=63.0
Q ss_pred CCCcEEEeCCCccH-HHHHHHhc---C-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGL-VGICLAHV---K-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~-~~~~la~~---g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
++..++|||||.|. +.+.+..+ + ...|+.+|+|.++|+.+..++....... -.+.-...|+.+.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~-----------l~v~~l~gdy~~~ 144 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSH-----------VRCAGLLGTYDDG 144 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCC-----------eEEEEEEecHHHH
Confidence 45589999999994 44444333 1 2379999999999999988887222210 1233234444332
Q ss_pred Cc---CCCCCCCCCEEEE-cccccCC--CChHHHHHHHHH-HhccCCCC
Q 038343 97 SE---SGLSAFVPEIILG-ADILYDR--SCFPDLVRILAI-LLNRRKSV 138 (191)
Q Consensus 97 ~~---~~~~~~~fDvIi~-~d~ly~~--~~~~~ll~~l~~-ll~~~g~~ 138 (191)
.. .........+|+. ...|-+. .....+|+.+++ .|+|++..
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~l 193 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSF 193 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 11 0001123566654 3366544 445577888988 89998653
No 246
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.83 E-value=0.00048 Score=58.27 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=55.1
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEE--cCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLT--DGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~t--D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
.+||+|||+|.+|..+...+.-.+... |..+..++.+. ..++.. .+.+ .+. ..-.++
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal----eRGvpa------------~~~~----~~s-~rLPfp 178 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL----ERGVPA------------MIGV----LGS-QRLPFP 178 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh----hcCcch------------hhhh----hcc-ccccCC
Confidence 689999999999998888865222211 33222222221 122210 0100 000 011256
Q ss_pred CCCCCEEEEcccccC-CCChHHHHHHHHHHhccCCC
Q 038343 103 AFVPEIILGADILYD-RSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~-~~~~~~ll~~l~~ll~~~g~ 137 (191)
++.||+|-|+.|+-. ...-.-++-.+.++|+|||.
T Consensus 179 ~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy 214 (506)
T PF03141_consen 179 SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY 214 (506)
T ss_pred ccchhhhhcccccccchhcccceeehhhhhhccCce
Confidence 788999999998863 33345688999999999985
No 247
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.80 E-value=0.0077 Score=48.13 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=40.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhc-C-CCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV-K-ASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~-g-~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
++.+|||+.++.|.=+..++.+ + ...+++.|+++.-+..++.|++..+..
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 136 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF 136 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 6778999999999665554443 3 359999999999999999999988754
No 248
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.80 E-value=0.0028 Score=46.97 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=40.3
Q ss_pred ccHHHHHHHHhhCCCCC--CCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChH
Q 038343 5 PSSLLLSEFILSFPEIF--SNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHL 56 (191)
Q Consensus 5 ~~a~~L~~~l~~~~~~~--~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~ 56 (191)
.++..|.+......-.. ++.+||||||++|..+.++.+.+ ..+|+++|..+.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 46788888887766222 34799999999999999988887 459999999754
No 249
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.016 Score=49.05 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=74.0
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
.++|.+|||.--+...+-+-|...++.+|+|+.++..+... |... ...+.+...|... ..+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~---~~~~-----------~~~~~~~~~d~~~---l~fed 112 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVR---NAKE-----------RPEMQMVEMDMDQ---LVFED 112 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhc---cccC-----------CcceEEEEecchh---ccCCC
Confidence 38999999999888888888888999999999888766532 2111 0234445554432 23566
Q ss_pred CCCCEEEEc---cc-------ccCCCChHHHHHHHHHHhccCCCCccccc---cCCCCcc
Q 038343 104 FVPEIILGA---DI-------LYDRSCFPDLVRILAILLNRRKSVSSSRK---ESSKGFT 150 (191)
Q Consensus 104 ~~fDvIi~~---d~-------ly~~~~~~~ll~~l~~ll~~~g~~~~~~~---~~~~~~~ 150 (191)
.+||+||.= |. +++......-+..+.++++++|+-..+.. .|.....
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~~ 172 (482)
T KOG2352|consen 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRKP 172 (482)
T ss_pred cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCCe
Confidence 789999862 22 22233455667889999999998776665 5553333
No 250
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.71 E-value=0.0055 Score=48.77 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=37.1
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+|+||.||.|..+.-+.+.|...+.++|+++.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 699999999999888888888789999999999988887753
No 251
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.70 E-value=0.025 Score=44.96 Aligned_cols=98 Identities=17% Similarity=0.068 Sum_probs=59.6
Q ss_pred CcEEEeCCCcc-HHHHHHHhc-CC-CeEEEEcCChHHHHHHHHHHH-HhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 24 KSCFEVGSGVG-LVGICLAHV-KA-SKVTLTDGDHLTLANMRSNLE-LNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 24 ~~VLElG~GtG-~~~~~la~~-g~-~~v~~tD~~~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
.+|+=||||.= +.++.+++. +. ..|+..|+++.+.+.+++-+. ..++. .++.+...|-.+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~------------~~m~f~~~d~~~~~~- 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS------------KRMSFITADVLDVTY- 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-------------SSEEEEES-GGGG-G-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc------------CCeEEEecchhcccc-
Confidence 59999999954 888888764 22 379999999999999988776 33433 457777766543321
Q ss_pred CCCCCCCCEEEEccccc-CCCChHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILGADILY-DRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly-~~~~~~~ll~~l~~ll~~~g 136 (191)
.-..||+|+.+-.+. ....-..++..+.+.++||.
T Consensus 189 --dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga 224 (276)
T PF03059_consen 189 --DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGA 224 (276)
T ss_dssp --G----SEEEE-TT-S----SHHHHHHHHHHHS-TTS
T ss_pred --ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCc
Confidence 124799998777665 66788999999999999985
No 252
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.074 Score=40.25 Aligned_cols=101 Identities=9% Similarity=0.020 Sum_probs=60.6
Q ss_pred CCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
..+|.+||=||+.+|.+--..+. .|...+++++.++.+...+-.-++... ++--.-.|-..+..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---------------Ni~PIL~DA~~P~~ 138 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---------------NIIPILEDARKPEK 138 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---------------CceeeecccCCcHH
Confidence 45788999999999966555554 344579999999988876655443321 22222223222210
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
=..--...|+|+. |+ -.+...+-+....+.+|+++|.
T Consensus 139 Y~~~Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FLk~~G~ 175 (231)
T COG1889 139 YRHLVEKVDVIYQ-DV-AQPNQAEILADNAEFFLKKGGY 175 (231)
T ss_pred hhhhcccccEEEE-ec-CCchHHHHHHHHHHHhcccCCe
Confidence 0001123566554 32 2345577778888999999975
No 253
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.55 E-value=0.0023 Score=50.91 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
.+..|+||.+|.|.+.+ ++.+.|++.|++.|.+|.+++.+++|++.|+..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence 45689999999999998 889999999999999999999999999999743
No 254
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.54 E-value=0.0025 Score=52.90 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=62.3
Q ss_pred CCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.+|||.=+|||+=|+-.++- +..+|++-|+|+.+++.+++|++.|++.. ..+.+...|-.....
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-----------~~~~v~~~DAn~ll~-- 116 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-----------ERIEVSNMDANVLLY-- 116 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-----------CCEEEEES-HHHHHC--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-----------ceEEEehhhHHHHhh--
Confidence 458999999999999954443 55699999999999999999999999773 134554444221110
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.....||+|=. |.+ ....+++...-+.++.+|
T Consensus 117 ~~~~~fD~IDl-DPf---GSp~pfldsA~~~v~~gG 148 (377)
T PF02005_consen 117 SRQERFDVIDL-DPF---GSPAPFLDSALQAVKDGG 148 (377)
T ss_dssp HSTT-EEEEEE---S---S--HHHHHHHHHHEEEEE
T ss_pred hccccCCEEEe-CCC---CCccHhHHHHHHHhhcCC
Confidence 13457888743 332 245678888888888775
No 255
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.41 E-value=0.028 Score=44.12 Aligned_cols=80 Identities=14% Similarity=0.087 Sum_probs=53.8
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
....|-|+|||-+-++. .. ...|+..|+-+ .| -++...|+.+.+ +
T Consensus 180 ~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-----------~~-----------------~~V~~cDm~~vP---l 224 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA-----------VN-----------------ERVIACDMRNVP---L 224 (325)
T ss_pred CceEEEecccchhhhhh---cc-ccceeeeeeec-----------CC-----------------CceeeccccCCc---C
Confidence 45589999999985543 22 23788888731 12 123445554432 4
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
++.+.|+++.+-.+. -.++..+++...++|++||.
T Consensus 225 ~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~ 259 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLM-GTNLADFIKEANRILKPGGL 259 (325)
T ss_pred ccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCce
Confidence 667899998754433 35688999999999999974
No 256
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.26 E-value=0.0036 Score=52.06 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLST 72 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~ 72 (191)
+|..|.|+.||.|-.++.+++.++ .|++-|.++++++.++.|+..|.+..
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~ 298 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDP 298 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccch
Confidence 677899999999999999999886 99999999999999999999998763
No 257
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.22 E-value=0.024 Score=43.71 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=54.8
Q ss_pred HHHHHHhhCCCCC--CCCcEEEeCCCcc-HHHHH-HHhcCCCeEEEEcCChHHHHHHHHHHHHh-cCCCCcccccccCCC
Q 038343 9 LLSEFILSFPEIF--SNKSCFEVGSGVG-LVGIC-LAHVKASKVTLTDGDHLTLANMRSNLELN-QLSTDTSLLESYEDP 83 (191)
Q Consensus 9 ~L~~~l~~~~~~~--~~~~VLElG~GtG-~~~~~-la~~g~~~v~~tD~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~ 83 (191)
.|++.|....... ++.++||+|.|.- +.-+. .-..|- +.+++|+++..+..++.++..| ++.
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~------------ 129 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLE------------ 129 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchh------------
Confidence 4555554433222 3457888866633 11111 122344 8999999999999999999999 433
Q ss_pred CeeEEEeecC-CCCCcCC-CCCCCCCEEEEcccccCC
Q 038343 84 NVVQCVHLPW-ESASESG-LSAFVPEIILGADILYDR 118 (191)
Q Consensus 84 ~~i~~~~ldw-~~~~~~~-~~~~~fDvIi~~d~ly~~ 118 (191)
..|+...-.- ....... -..+.||+++|+..+|..
T Consensus 130 ~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 130 RAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred hheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 1222221110 0000000 123579999999888854
No 258
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.12 E-value=0.18 Score=42.28 Aligned_cols=101 Identities=10% Similarity=0.085 Sum_probs=65.4
Q ss_pred CCCcEEEeCCCccHHHHHHHh--cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH--VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~--~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
+|.+|||+.|-.|-=+.++|. .+...|++.|.+..-+..++.|+...+.. +..+...|-.+....
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-------------ntiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-------------NTIVSNYDGREFPEK 307 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-------------ceEEEccCccccccc
Confidence 788999999998833332222 23347999999999999999999988854 344555554433333
Q ss_pred CCCCCCCCEEEE----cc--cccCCCC----------------hHHHHHHHHHHhccCC
Q 038343 100 GLSAFVPEIILG----AD--ILYDRSC----------------FPDLVRILAILLNRRK 136 (191)
Q Consensus 100 ~~~~~~fDvIi~----~d--~ly~~~~----------------~~~ll~~l~~ll~~~g 136 (191)
.+.. +||-|+. +. +++.+.. ...|+...-+++++||
T Consensus 308 ~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GG 365 (460)
T KOG1122|consen 308 EFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGG 365 (460)
T ss_pred ccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCc
Confidence 3443 8999983 44 6664432 3344555556677764
No 259
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.10 E-value=0.0071 Score=49.09 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=58.2
Q ss_pred CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHH-------HHHHHHHHhcCCCCcccccccCCCCeeEEEe
Q 038343 18 PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLA-------NMRSNLELNQLSTDTSLLESYEDPNVVQCVH 90 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ 90 (191)
....+|+-|.|=-.|||.+-+.+|..|+ .|+++|++-.++. .++.|.++.+..- .-+.+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~-----------~fldvl~ 271 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS-----------QFLDVLT 271 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcc-----------hhhheee
Confidence 3345788999999999988888999998 9999999877775 4556666665331 2244555
Q ss_pred ecCCCCCcCCCCCCCCCEEEEcccccC
Q 038343 91 LPWESASESGLSAFVPEIILGADILYD 117 (191)
Q Consensus 91 ldw~~~~~~~~~~~~fDvIi~~d~ly~ 117 (191)
.|.....- .....||.||| |.-|.
T Consensus 272 ~D~sn~~~--rsn~~fDaIvc-DPPYG 295 (421)
T KOG2671|consen 272 ADFSNPPL--RSNLKFDAIVC-DPPYG 295 (421)
T ss_pred ecccCcch--hhcceeeEEEe-CCCcc
Confidence 55544321 12347899887 66563
No 260
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.99 E-value=0.06 Score=42.66 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
...|+.|+=+| ---++|+.++..| +++|..+|+++..++...+.++..+.. ++.+...|..++.+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-------------~ie~~~~Dlr~plp 215 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-------------NIEAFVFDLRNPLP 215 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-------------chhheeehhcccCh
Confidence 35788899998 5557777666544 569999999999999999888877753 46777888777655
Q ss_pred CCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 99 SGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
..+. ++||+++. +++..+..++.++..|
T Consensus 216 e~~~-~kFDvfiT--------DPpeTi~alk~FlgRG 243 (354)
T COG1568 216 EDLK-RKFDVFIT--------DPPETIKALKLFLGRG 243 (354)
T ss_pred HHHH-hhCCeeec--------CchhhHHHHHHHHhcc
Confidence 4433 58999875 4455666777777666
No 261
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.91 E-value=0.022 Score=43.29 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.|.+.+.+.. ..+|..|||--||+|.+++++.++|- +++++|++++..+.+++
T Consensus 179 ~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 3444444322 23677999999999999999999976 89999999998888763
No 262
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.78 E-value=0.031 Score=43.30 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=51.6
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
+|||.-+|-|.=++.++..|+ +|++.+.+|-+-..++.-++......... ..-..++++...|-.+... .++.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~----~~~~~ri~l~~~d~~~~L~--~~~~ 150 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELL----AEAMRRIQLIHGDALEYLR--QPDN 150 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTH----HHHHHHEEEEES-CCCHCC--CHSS
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhH----HHHHhCCEEEcCCHHHHHh--hcCC
Confidence 899999999999999998987 89999999877666665443322110000 0001356666666544332 2346
Q ss_pred CCCEEEEcccccCCCChHH----HHHHHHHHhc
Q 038343 105 VPEIILGADILYDRSCFPD----LVRILAILLN 133 (191)
Q Consensus 105 ~fDvIi~~d~ly~~~~~~~----ll~~l~~ll~ 133 (191)
+||+|.. |.+|....-.+ =++.++.++.
T Consensus 151 s~DVVY~-DPMFp~~~ksa~vkk~m~~lr~L~~ 182 (234)
T PF04445_consen 151 SFDVVYF-DPMFPERKKSALVKKEMRVLRDLAG 182 (234)
T ss_dssp --SEEEE---S-----TTTT-SHHHHHHHHHHS
T ss_pred CCCEEEE-CCCCCCcccccccccchHHHHHhhc
Confidence 8999998 77775433222 3455555554
No 263
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.75 E-value=0.051 Score=44.25 Aligned_cols=92 Identities=16% Similarity=0.031 Sum_probs=63.0
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
...+|+|+|.|.+.-.+....+ ++-+++.+...+..++.++. .+ +.....|.-+..
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~g----------------V~~v~gdmfq~~------ 234 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-PG----------------VEHVAGDMFQDT------ 234 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-CC----------------cceecccccccC------
Confidence 5789999999955544333434 78899888777666655543 22 222333332221
Q ss_pred CCCCEEEEcccccCCC--ChHHHHHHHHHHhccCCCCc
Q 038343 104 FVPEIILGADILYDRS--CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~--~~~~ll~~l~~ll~~~g~~~ 139 (191)
.+-|+|+.-.|+++.. +...+|+.+++-|+|+|+..
T Consensus 235 P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 235 PKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred CCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEE
Confidence 2467999999999765 57788999999999988655
No 264
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.065 Score=44.03 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=62.9
Q ss_pred CCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|+|--+|||+=|+-.+. .+..+|++-|++|.+++.+++|++.|... ...+..-|-+.....
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-------------~~~v~n~DAN~lm~~-- 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-------------DAEVINKDANALLHE-- 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-------------cceeecchHHHHHHh--
Confidence 66899999999999995554 55558999999999999999999999422 122222221111110
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
....||+|=. |.+= .+.+++....+.++.+|-
T Consensus 118 ~~~~fd~IDi-DPFG---SPaPFlDaA~~s~~~~G~ 149 (380)
T COG1867 118 LHRAFDVIDI-DPFG---SPAPFLDAALRSVRRGGL 149 (380)
T ss_pred cCCCccEEec-CCCC---CCchHHHHHHHHhhcCCE
Confidence 1256888732 4332 345667777777776653
No 265
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.61 E-value=0.0005 Score=46.38 Aligned_cols=95 Identities=15% Similarity=-0.011 Sum_probs=30.3
Q ss_pred EEeCCCccHHHHHHHhc----CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 27 FEVGSGVGLVGICLAHV----KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 27 LElG~GtG~~~~~la~~----g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
||+|+..|..++.+++. +..+++++|..+. .+..+++++..+.. .++++...+..+... .+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~------------~~~~~~~g~s~~~l~-~~~ 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS------------DRVEFIQGDSPDFLP-SLP 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG-------------BTEEEEES-THHHHH-HHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC------------CeEEEEEcCcHHHHH-HcC
Confidence 79999999877765542 2137999999875 33344444433322 245666555322211 122
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
..+||+|+. |.-+..+....-++.+...|+|+|
T Consensus 67 ~~~~dli~i-Dg~H~~~~~~~dl~~~~~~l~~gg 99 (106)
T PF13578_consen 67 DGPIDLIFI-DGDHSYEAVLRDLENALPRLAPGG 99 (106)
T ss_dssp H--EEEEEE-ES---HHHHHHHHHHHGGGEEEEE
T ss_pred CCCEEEEEE-CCCCCHHHHHHHHHHHHHHcCCCe
Confidence 357999886 443333344455566666677764
No 266
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.53 E-value=0.083 Score=42.64 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=38.7
Q ss_pred CCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 21 FSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
.++..++|.-+|.|--+..+++ .+..+|++.|.++.++..+++.++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~ 67 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF 67 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence 4677999999999977775554 33358999999999999998877643
No 267
>PRK11524 putative methyltransferase; Provisional
Probab=95.46 E-value=0.069 Score=42.66 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=41.0
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
.+|..|||-.+|+|.+++++.++|- ++++.|++++-.+.+++.+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 4788999999999999999999976 899999999999998887654
No 268
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.42 E-value=0.059 Score=44.39 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=63.8
Q ss_pred CcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeec---CCCCCcC
Q 038343 24 KSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLP---WESASES 99 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ld---w~~~~~~ 99 (191)
.+||=||.|-|+....+.+.. ..+++.+|.+|.|++.+++|.....+..... ...++++..-| |-..
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf------~dpRv~Vv~dDAf~wlr~--- 361 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSF------SDPRVTVVNDDAFQWLRT--- 361 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCc------cCCeeEEEeccHHHHHHh---
Confidence 489999999999999888875 5699999999999999987654433221100 11344444333 3222
Q ss_pred CCCCCCCCEEEEcccccCCC-------ChHHHHHHHHHHhccCCCC
Q 038343 100 GLSAFVPEIILGADILYDRS-------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~-------~~~~ll~~l~~ll~~~g~~ 138 (191)
....||+||. |.. ++. .-.++-..+++.|+++|..
T Consensus 362 --a~~~fD~vIV-Dl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~ 403 (508)
T COG4262 362 --AADMFDVVIV-DLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLM 403 (508)
T ss_pred --hcccccEEEE-eCC-CCCCcchhhhhhHHHHHHHHHhcCcCceE
Confidence 1237888886 221 111 1234556677777777643
No 269
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.067 Score=43.81 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=57.6
Q ss_pred CCCCCCcEEEeCCCccHHHHHHHhcC--CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSGVGLVGICLAHVK--ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~~la~~g--~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
..+..++|||+|.|.|....++-..- .++++.++.++ .+..+-..+..|-.. ...+|...
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t-----------------~~td~r~s 171 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVST-----------------EKTDWRAS 171 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhccc-----------------ccCCCCCC
Confidence 34677789999999885444333322 24677777765 445554455554322 22444322
Q ss_pred Cc-----CCCCCCCCCEEEEcccccCCCChH---HHHHHHHHHhccCC
Q 038343 97 SE-----SGLSAFVPEIILGADILYDRSCFP---DLVRILAILLNRRK 136 (191)
Q Consensus 97 ~~-----~~~~~~~fDvIi~~d~ly~~~~~~---~ll~~l~~ll~~~g 136 (191)
.- .......|++|++.|=+-...... ..++.+-.++.|||
T Consensus 172 ~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg 219 (484)
T COG5459 172 DVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGG 219 (484)
T ss_pred ccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCC
Confidence 10 111234689999888776554433 45666777788865
No 270
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.15 E-value=0.059 Score=43.60 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=37.0
Q ss_pred CCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
...|.+||=+|+| .|+..+..| .+|+++|+++|.++.-|+.+++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3467899999999 887777544 5799999999999999999886
No 271
>PRK13699 putative methylase; Provisional
Probab=94.95 E-value=0.14 Score=39.52 Aligned_cols=46 Identities=9% Similarity=-0.054 Sum_probs=40.1
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
+|..|||--||+|.+++++.++|- +++++|++++-.+.+.+.++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 677999999999999999999876 8999999999988887776543
No 272
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.84 E-value=0.18 Score=40.64 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=71.9
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCc------cccc------------------
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDT------SLLE------------------ 78 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~------~~~~------------------ 78 (191)
..+||==|||.|-++.-++..|. .+-+-+.+--|+- ..+.-+|...... ...+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli--~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLI--CSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHH--HHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 44788899999999999999987 5666677655543 2333333211110 0000
Q ss_pred -----ccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCccccc
Q 038343 79 -----SYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDT 153 (191)
Q Consensus 79 -----~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~ 153 (191)
.+.....+....+|+-+.-......+.||+|+.+--|-...++-..+++|.++|+|||.+.- -++.+..
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN------lGPLlYH 301 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN------LGPLLYH 301 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe------ccceeee
Confidence 01111222223333322222212235799999874443456677789999999999987662 2445566
Q ss_pred ccCC
Q 038343 154 KCNT 157 (191)
Q Consensus 154 ~~~~ 157 (191)
|...
T Consensus 302 F~d~ 305 (369)
T KOG2798|consen 302 FEDT 305 (369)
T ss_pred ccCC
Confidence 6553
No 273
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.83 E-value=0.19 Score=39.26 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=47.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcC-CCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK-ASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g-~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
..+|+|||||.==+++...... ...|++.|++..+++.+..-+..-+.. ..+...|.-.. .
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--------------~~~~v~Dl~~~----~ 167 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--------------HDARVRDLLSD----P 167 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--------------EEEEEE-TTTS----H
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--------------cceeEeeeecc----C
Confidence 5589999999887777444442 239999999999999998877766643 33344443322 2
Q ss_pred CCCCCCEEEEcc
Q 038343 102 SAFVPEIILGAD 113 (191)
Q Consensus 102 ~~~~fDvIi~~d 113 (191)
.....|+.+.--
T Consensus 168 ~~~~~DlaLllK 179 (251)
T PF07091_consen 168 PKEPADLALLLK 179 (251)
T ss_dssp TTSEESEEEEET
T ss_pred CCCCcchhhHHH
Confidence 334689888643
No 274
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.51 E-value=0.088 Score=35.68 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcC
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDG 53 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~ 53 (191)
....+|||||.|++--.+.+-|. .-.++|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 44799999999999988888887 5677775
No 275
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.76 E-value=0.24 Score=40.41 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
..+++||.||.|.+++-+...|..-+.+.|+++.+++.-+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 34899999999999998888888789999999999888877754
No 276
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.72 E-value=0.22 Score=41.23 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.|++.+.+......-..|+|+|+|.|.++.+++- .|. +|.++|.+....+.++
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHH
Confidence 3445554443333445899999999999987765 444 8999999866554443
No 277
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.69 E-value=0.15 Score=41.06 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=37.2
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+++||.||.|.+++-+.+.|...+.++|+++.+.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 699999999999998889888789999999999988888875
No 278
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.56 E-value=0.17 Score=39.63 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCcEEEeCCCccHHHH-HHHhcC--------CCeEEEEcCChHHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGLVGI-CLAHVK--------ASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~-~la~~g--------~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
..+|+|+|+|+|.++. .+..+. .-+|+.+|.++.+.+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3599999999997666 333221 1389999999887666655543
No 279
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.53 E-value=0.3 Score=37.38 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=32.8
Q ss_pred CCcEEEeCCCccHHHHHHHhcC---CCeEEEEcCChHHHHHHHHHHHHh
Q 038343 23 NKSCFEVGSGVGLVGICLAHVK---ASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g---~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
.-++-|=.||+|.+-..+..+. -..|++.|+++++|+.+++|+..-
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 3489999999995544444332 248999999999999999997653
No 280
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=0.36 Score=39.77 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHHHhhCCC---CCCCCcEEEeCCCccHHHH-HHHhc--------CCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 8 LLLSEFILSFPE---IFSNKSCFEVGSGVGLVGI-CLAHV--------KASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 8 ~~L~~~l~~~~~---~~~~~~VLElG~GtG~~~~-~la~~--------g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
..++.|+.+.-. ......++|+|+|+|.+.. ++... .+.+|..++.|++....-+.+++..
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 455666555321 1234479999999997665 44332 2459999999987766555555443
No 281
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.41 E-value=0.88 Score=39.50 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCCCcEEEeCCC-ccHHHHHH-HhcCCCeEEEEcCChHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGICL-AHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~~l-a~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
..++.+|+=+|+| .|+.++.. ..+|+ .|+++|.+++.++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 3468899999999 78888744 45688 89999999988877764
No 282
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=92.88 E-value=1.8 Score=33.88 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=75.3
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
...|..|+....+..++.. |..-+|+=.++..+.+-. .++.+++..|+-...++.|+... .++
T Consensus 74 pa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~d---------------~~v 136 (279)
T COG2961 74 PAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAGD---------------RRV 136 (279)
T ss_pred hHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCCC---------------cce
Confidence 4456667665444445544 888899887777666664 48999999999888888877622 356
Q ss_pred EEEeecCCCCCcCCCC-CCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 87 QCVHLPWESASESGLS-AFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 87 ~~~~ldw~~~~~~~~~-~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.+...|=-......++ ..+--+|+.-..+....+++.+++++++.++.-.
T Consensus 137 rv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~ 187 (279)
T COG2961 137 RVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFA 187 (279)
T ss_pred EEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhc
Confidence 6777662211122222 2345666664444567789999999999998774
No 283
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.79 E-value=2.3 Score=31.15 Aligned_cols=104 Identities=11% Similarity=0.047 Sum_probs=64.9
Q ss_pred HHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 7 SLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 7 a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
+..|++.+.+... .+.+|+=|||=+-...+.-......++++.|++..- ...+ ..
T Consensus 12 ~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~--------------~~- 66 (162)
T PF10237_consen 12 AEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFG--------------GD- 66 (162)
T ss_pred HHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcC--------------Cc-
Confidence 5566666665432 456899998887666654422223489999998532 2211 12
Q ss_pred EEEeecCCCCCcC--CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 87 QCVHLPWESASES--GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 87 ~~~~ldw~~~~~~--~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
.+...|...+... .+ .++||+||+=..+...+.......+++.++++++
T Consensus 67 ~F~fyD~~~p~~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~ 117 (162)
T PF10237_consen 67 EFVFYDYNEPEELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGG 117 (162)
T ss_pred ceEECCCCChhhhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccc
Confidence 3445666554321 23 4689999985555556666777899999999964
No 284
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=92.76 E-value=0.36 Score=37.63 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=35.1
Q ss_pred CCCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.++..+|+=+|+| .|.... +|++.|..+++++|.+.-.+.++.+.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi 74 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQI 74 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhh
Confidence 3466789999988 776555 889999999999999876666554443
No 285
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.66 E-value=0.37 Score=38.15 Aligned_cols=100 Identities=22% Similarity=0.165 Sum_probs=55.4
Q ss_pred cEEEeCCC---ccHHHHHHHhc-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc--
Q 038343 25 SCFEVGSG---VGLVGICLAHV-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE-- 98 (191)
Q Consensus 25 ~VLElG~G---tG~~~~~la~~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~-- 98 (191)
..|||||| .|.+-..+... ...+|+.+|.+|-++...+.-+..+.- ....+...|..++..
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-------------g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-------------GRTAYVQADLRDPEAIL 137 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-------------SEEEEEE--TT-HHHHH
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-------------ccEEEEeCCCCCHHHHh
Confidence 79999999 44444443332 234999999999999888876655431 235666766654421
Q ss_pred ------CCCCCCCCCEEEEcccccCC---CChHHHHHHHHHHhccCCC
Q 038343 99 ------SGLSAFVPEIILGADILYDR---SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 99 ------~~~~~~~fDvIi~~d~ly~~---~~~~~ll~~l~~ll~~~g~ 137 (191)
..+.-.+.=-|+...++++. ++...++..+...|.||+.
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~ 185 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSY 185 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-E
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCce
Confidence 00111223345566677754 4688888999999988854
No 286
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.69 Score=33.40 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=39.9
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
+..+.+|||+|-|-+-+.+++.|...-++++.++=.+...+-..-..+..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA 121 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc
Confidence 44579999999998888889988778899999998887777665555543
No 287
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.40 E-value=0.65 Score=36.03 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=30.6
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANM 61 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~ 61 (191)
+.+.+|+=+||| .| .+...+++.|..+++++|.+.-...++
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl 51 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL 51 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh
Confidence 356689999998 66 455588899999999999865433333
No 288
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.91 E-value=1.8 Score=34.71 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCCCCcEEEeCCCccH-HHH--HHHhcCCCeEEEEcCCh
Q 038343 20 IFSNKSCFEVGSGVGL-VGI--CLAHVKASKVTLTDGDH 55 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~-~~~--~la~~g~~~v~~tD~~~ 55 (191)
..+++++|=+|+| |. -++ .++..|+++|+.++.++
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3567889999998 52 222 45677887799999875
No 289
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.73 E-value=0.45 Score=33.23 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHHhhCCCCCCCCcEEEeCCCcc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 9 LLSEFILSFPEIFSNKSCFEVGSGVG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 9 ~L~~~l~~~~~~~~~~~VLElG~GtG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
.+++|+.++. +..+|+|+|-|-= -.+..+...|. .|++||+++.
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc
Confidence 4678887543 2339999999955 67778888886 9999999875
No 290
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.61 E-value=0.82 Score=31.41 Aligned_cols=80 Identities=23% Similarity=0.150 Sum_probs=54.0
Q ss_pred cEEEeCCCcc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCC
Q 038343 25 SCFEVGSGVG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSA 103 (191)
Q Consensus 25 ~VLElG~GtG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~ 103 (191)
+|+|+|.|-= -.+-.+++.|. .|++||+++. +.. ..+.+..-|..++.
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~-----------------~g~~~v~DDitnP~------ 64 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP-----------------EGLRFVVDDITNPN------ 64 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc-----------------ccceEEEccCCCcc------
Confidence 8999988854 46667888887 8999999764 111 12444555544432
Q ss_pred CCCCEEEEcccccCCCChHHHHHHHHHHhccCCC
Q 038343 104 FVPEIILGADILYDRSCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 104 ~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~ 137 (191)
.-+--.++.+|.....+.+.+.+-++.+.=|-
T Consensus 65 --~~iY~~A~lIYSiRpppEl~~~ildva~aVga 96 (129)
T COG1255 65 --ISIYEGADLIYSIRPPPELQSAILDVAKAVGA 96 (129)
T ss_pred --HHHhhCccceeecCCCHHHHHHHHHHHHhhCC
Confidence 22333567778877788888888888776654
No 291
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.54 E-value=0.72 Score=34.91 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=28.7
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
.+.+.+||=+||| .| .+...+++.|..+++.+|.+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 3467799999999 55 456678888988999999863
No 292
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.47 E-value=0.062 Score=45.72 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=42.6
Q ss_pred CCCcEEEeCCCccHHHHHHHhc--CCCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHV--KASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~--g~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
++.+|||-=|+||+-++-.++. |..+|++-|.++.+++..++|++.|+.+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~ 160 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE 160 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch
Confidence 4568999999999999955553 4568999999999999999999999654
No 293
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.45 E-value=0.97 Score=37.10 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
...++.+|+=.|+| .|..++-+++ +|+ +|++.|.+++-++.+++- +.+ ...++.+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~l----GAd-----------------~~i~~~~~ 220 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKL----GAD-----------------HVINSSDS 220 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHh----CCc-----------------EEEEcCCc
Confidence 34578899988888 5567776666 785 999999998877777642 211 12222211
Q ss_pred C-cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 97 S-ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 97 ~-~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
. ..... ..||+||-. .. ...+...-++|+++|....+
T Consensus 221 ~~~~~~~-~~~d~ii~t------v~-~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 221 DALEAVK-EIADAIIDT------VG-PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred hhhHHhH-hhCcEEEEC------CC-hhhHHHHHHHHhcCCEEEEE
Confidence 1 11111 138888753 22 55677777888899865543
No 294
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.00 E-value=1.1 Score=33.92 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=28.7
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCC
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGD 54 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~ 54 (191)
.++..+|+=+||| .| .++..+++.|..++++.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3467799999999 55 56668888998899999987
No 295
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.60 E-value=0.54 Score=38.18 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=35.3
Q ss_pred EEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 26 CFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 26 VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
|+||.||.|.+++-+.+.|..-+.+.|+++.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 68999999999998888888677889999999888887753
No 296
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=1.3 Score=35.88 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=33.0
Q ss_pred CCCCcEEEeCCC-ccH-HHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGL-VGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~-~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
..+.-|+=+||| .|. ..-++.+.|+.++-.+|.++-.|..+.+
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNr 116 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNR 116 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhh
Confidence 456679999998 674 4447888999999999998777766543
No 297
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.29 E-value=2.1 Score=31.60 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.7
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+|+=+||| .| .+...+++.|..+++..|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47889998 56 456678888988999999875
No 298
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=90.09 E-value=0.48 Score=36.92 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
|+.+|.+.....+..+++|.-||+|.+++.+... ...|+.-|+++......+
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHH
Confidence 4455554322115779999999999999876654 348999999987765554
No 299
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.64 E-value=2.5 Score=36.56 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=38.3
Q ss_pred CCCcEEEeCCCccHHHHHHHh-cC----CCeEEEEcCChHHHHHHHHHHHHhcCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH-VK----ASKVTLTDGDHLTLANMRSNLELNQLS 71 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~-~g----~~~v~~tD~~~~~l~~~~~n~~~n~~~ 71 (191)
+..+|.|--||+|.+-+.+.+ .+ ...+++.|.++.....++.|+-.+++.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 445899999999955443332 21 136999999999999999999998876
No 300
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=89.45 E-value=0.51 Score=35.42 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=27.0
Q ss_pred CCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcC
Q 038343 20 IFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDG 53 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~ 53 (191)
..++.+|||+||..|..+..+.+. ++ ..|.++|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 447889999999999999877664 22 37899997
No 301
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.44 E-value=2.6 Score=33.53 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=30.1
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLT 57 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~ 57 (191)
.+.+.+|+=+||| .| .+...+++.|..+++.+|.+.-.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 3567799999999 66 55568889998899999987443
No 302
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=89.14 E-value=1.3 Score=34.72 Aligned_cols=112 Identities=11% Similarity=0.017 Sum_probs=59.5
Q ss_pred CCCCCCCCcEEEeCCCccHHHHHHHh-cCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC
Q 038343 17 FPEIFSNKSCFEVGSGVGLVGICLAH-VKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE 94 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG~~~~~la~-~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~ 94 (191)
+.+..++.+||=||+++|..--..+. .|.. -|++++.++-.=..+. |+..... +|.-+.-|-.
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkkRt--------------NiiPIiEDAr 215 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKKRT--------------NIIPIIEDAR 215 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhccC--------------CceeeeccCC
Confidence 45566899999999999943333333 3332 6999998764433222 2211110 1111111111
Q ss_pred CCCcCCCCCCCCCEEE-EcccccC----CCChHHHHHHHHHHhccCCCCccccccCCCCcc
Q 038343 95 SASESGLSAFVPEIIL-GADILYD----RSCFPDLVRILAILLNRRKSVSSSRKESSKGFT 150 (191)
Q Consensus 95 ~~~~~~~~~~~fDvIi-~~d~ly~----~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~ 150 (191)
...+|-+.+ +-|+||. ++...-+.-..+.+|+++|..-+...++|..-+
T Consensus 216 -------hP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikancidst 269 (317)
T KOG1596|consen 216 -------HPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKANCIDST 269 (317)
T ss_pred -------CchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEeccccccc
Confidence 112343322 2344442 233444455667799999998888888885443
No 303
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.01 E-value=7.6 Score=29.83 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=48.2
Q ss_pred CCCCcEEEeCCCccHHH---HHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGLVG---ICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~---~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++++++|=.|++.|+-. ..+++.|+ +|++++.+++.++.+...++..+ .++.+...|..+..
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~ 73 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--------------GAAEALAFDIADEE 73 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEccCCCHH
Confidence 56888998887655322 23455677 89999998877766655554433 23566677766543
Q ss_pred cCC-------CCCCCCCEEEEccc
Q 038343 98 ESG-------LSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ 114 (191)
.-. ..-++.|.|+.+--
T Consensus 74 ~~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 74 AVAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 110 01246788886543
No 304
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.94 E-value=1.9 Score=35.45 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=29.0
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
.+.+.+||=+||| .| .++..+++.|..+++.+|.+.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3467799999999 55 455588889988999999874
No 305
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=88.46 E-value=0.5 Score=40.51 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=58.6
Q ss_pred CcEEEeCCCccHHHHHHHhcCC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 24 KSCFEVGSGVGLVGICLAHVKA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
.+|+|+.+|.|.++..|..... -.|+-++. +..|..+ -..++ --...||.+....
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~-~ntL~vI----ydRGL----------------IG~yhDWCE~fsT-- 423 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSG-PNTLPVI----YDRGL----------------IGVYHDWCEAFST-- 423 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCC-CCcchhh----hhccc----------------chhccchhhccCC--
Confidence 4899999999988877766532 13333321 2222221 12221 1245678765432
Q ss_pred CCCCCCEEEEcccccC---CCChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYD---RSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~---~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
-+..||+|-+..++-. .-.++.++-.+.++|+|+|...
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~i 464 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVI 464 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEE
Confidence 2358999999877653 3458899999999999998544
No 306
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.34 E-value=1.4 Score=33.88 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=28.4
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
..+.+|+=+||| .| .+...+++.|..+++.+|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 456799999999 56 556688889999999998764
No 307
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.29 E-value=2 Score=35.36 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-
Q 038343 22 SNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE- 98 (191)
Q Consensus 22 ~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~- 98 (191)
++.+|+=+||| .|++++.+++ .|++.|+++|.+++-++.+++-....... ..... +...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~-----------------~~~~~-~~~~~ 229 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV-----------------NPSED-DAGAE 229 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee-----------------cCccc-cHHHH
Confidence 44489999999 8988775555 68889999999999888887522111000 00000 0000
Q ss_pred -CCCC-CCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 99 -SGLS-AFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 99 -~~~~-~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.... ...+|+++=+- -....+....++++++|....
T Consensus 230 ~~~~t~g~g~D~vie~~------G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 230 ILELTGGRGADVVIEAV------GSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred HHHHhCCCCCCEEEECC------CCHHHHHHHHHHhcCCCEEEE
Confidence 0011 12588887422 155678888889999986553
No 308
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.20 E-value=3.9 Score=31.19 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCC
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGD 54 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~ 54 (191)
.++..+|+=+||| .| .+...+++.|..+++..|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3467799999999 56 56668888898899999987
No 309
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=87.82 E-value=0.68 Score=37.61 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=46.7
Q ss_pred EEeCCCccHHHHHH---HhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC-cC---
Q 038343 27 FEVGSGVGLVGICL---AHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS-ES--- 99 (191)
Q Consensus 27 LElG~GtG~~~~~l---a~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~-~~--- 99 (191)
+|+|.| ...++. +....-...+||++...++.++.|+..|++. ..+.+....-.+.. .+
T Consensus 107 iDIgtg--asci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls------------s~ikvV~~~~~ktll~d~~~ 172 (419)
T KOG2912|consen 107 IDIGTG--ASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS------------SLIKVVKVEPQKTLLMDALK 172 (419)
T ss_pred eeccCc--hhhhHHhhhchhccceeeeeeccccccchhhccccccccc------------cceeeEEecchhhcchhhhc
Confidence 577555 444432 2222237899999999999999999999876 23333332111110 00
Q ss_pred CCCCCCCCEEEEcccccCC
Q 038343 100 GLSAFVPEIILGADILYDR 118 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~ 118 (191)
..++..||..+|+..+|..
T Consensus 173 ~~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 173 EESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred cCccceeeEEecCCchhhc
Confidence 1123459999998888755
No 310
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.55 E-value=2.3 Score=34.97 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+...+||=+||| .| .+...++..|..+++.+|.+.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 466799999999 56 455688888988999999864
No 311
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.43 E-value=5.4 Score=32.17 Aligned_cols=94 Identities=22% Similarity=0.078 Sum_probs=52.2
Q ss_pred CcEEEeCCC--ccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 24 KSCFEVGSG--VGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 24 ~~VLElG~G--tG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++|+=+|+| -|.++..+++.|. .|++++.+.+-++.+++ .+++.... ......+ ....... .
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~-------~g~~~~~-~~~~~~~--~-- 66 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVE-------QGQASLY-AIPAETA--D-- 66 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEee-------CCcceee-ccCCCCc--c--
Confidence 468889999 4478888888886 89999987655555543 12221100 0000111 1111111 1
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
....||+|+.+-=- .+.+..++.++.++.++.
T Consensus 67 ~~~~~D~viv~vK~---~~~~~al~~l~~~l~~~t 98 (305)
T PRK05708 67 AAEPIHRLLLACKA---YDAEPAVASLAHRLAPGA 98 (305)
T ss_pred cccccCEEEEECCH---HhHHHHHHHHHhhCCCCC
Confidence 12479999864222 235667777877787763
No 312
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.39 E-value=2.7 Score=35.11 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=39.7
Q ss_pred cccccHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 2 SIWPSSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 2 ~~W~~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
.+|+...+.-+.|.-. ++.+||=|.+| |-..+.+...++++|+++|.||.-+..++-++.
T Consensus 19 ~~WEDp~vD~~aL~i~----~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 19 QCWEDPRVDMEALNIG----PDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred cccCCcHHHHHHhCCC----CCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 4688877776665433 56689999544 333333344556799999999987766654443
No 313
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.35 E-value=3.9 Score=28.81 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=23.7
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+|+=+||| .| .+...+++.|..+++.+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 47778988 55 455578888888999999763
No 314
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=87.27 E-value=1.1 Score=32.01 Aligned_cols=77 Identities=17% Similarity=0.034 Sum_probs=41.6
Q ss_pred eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCC--------
Q 038343 47 KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDR-------- 118 (191)
Q Consensus 47 ~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~-------- 118 (191)
+|++.|+.+++++..++.++.++.. .++.+..-.-+... ...+.+++|.++.+ .=|-|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~------------~~v~li~~sHe~l~-~~i~~~~v~~~iFN-LGYLPggDk~i~T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE------------DRVTLILDSHENLD-EYIPEGPVDAAIFN-LGYLPGGDKSITT 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G------------SGEEEEES-GGGGG-GT--S--EEEEEEE-ESB-CTS-TTSB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC------------CcEEEEECCHHHHH-hhCccCCcCEEEEE-CCcCCCCCCCCCc
Confidence 5899999999999999999988754 23444333222111 11222367777653 11211
Q ss_pred --CChHHHHHHHHHHhccCCC
Q 038343 119 --SCFPDLVRILAILLNRRKS 137 (191)
Q Consensus 119 --~~~~~ll~~l~~ll~~~g~ 137 (191)
+..-..++....+|+++|.
T Consensus 67 ~~~TTl~Al~~al~lL~~gG~ 87 (140)
T PF06962_consen 67 KPETTLKALEAALELLKPGGI 87 (140)
T ss_dssp -HHHHHHHHHHHHHHEEEEEE
T ss_pred CcHHHHHHHHHHHHhhccCCE
Confidence 2233445555667788864
No 315
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=87.22 E-value=2.4 Score=32.31 Aligned_cols=100 Identities=16% Similarity=0.024 Sum_probs=48.1
Q ss_pred CCCcEEEeCCCccHHHHHHHh----c-CCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAH----V-KASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~----~-g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+...|+|+|.-.|-..++.|. + +..+|+++|++....... .++.... ..+|++.+.+..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~------------~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM------------SPRITFIQGDSIDP 97 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----------------TTEEEEES-SSST
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc------------cCceEEEECCCCCH
Confidence 445899999988866665543 3 335999999964322111 1111111 14688888876554
Q ss_pred CcC----CC-CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 97 SES----GL-SAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 97 ~~~----~~-~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
... .. ......+ +.-|.=|.....-..++....++++|+
T Consensus 98 ~~~~~v~~~~~~~~~vl-VilDs~H~~~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 98 EIVDQVRELASPPHPVL-VILDSSHTHEHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp HHHHTSGSS----SSEE-EEESS----SSHHHHHHHHHHT--TT-
T ss_pred HHHHHHHHhhccCCceE-EEECCCccHHHHHHHHHHhCccCCCCC
Confidence 311 11 1122334 444776777788888888999999985
No 316
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.19 E-value=1.6 Score=37.57 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
..+++||.||.|.+++-+-..|...|.+.|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4589999999999888888888777899999998888777764
No 317
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=87.00 E-value=3.6 Score=34.48 Aligned_cols=26 Identities=19% Similarity=0.000 Sum_probs=19.9
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHH
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPD 123 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ 123 (191)
...++.++.+++.++-.+++....+.
T Consensus 155 ~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 155 RRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred ccccCCCceEEEEeeccceecccCch
Confidence 33467789999999999998775554
No 318
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=86.47 E-value=11 Score=30.27 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.3
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+...+||=+||| .| -++..++..|.++++..|.+.-
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~v 54 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPC 54 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Confidence 356689999998 55 3444778889899999997643
No 319
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=86.37 E-value=15 Score=29.17 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=70.3
Q ss_pred CCCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 19 EIFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
..+.++.+|-=|++.| .++..+++.|+ +|+.++.+++.++.....+...+.. ..++.....|..+
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dv~~ 71 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYT-----------GGKVLAIVCDVSK 71 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCC-----------CCeeEEEECcCCC
Confidence 3467889999998887 45567888998 8999999998888777665554422 1345555556543
Q ss_pred CCcCC-------CC-CCCCCEEEEcccccCCC---------------------ChHHHHHHHHHHhccCCCCccccccCC
Q 038343 96 ASESG-------LS-AFVPEIILGADILYDRS---------------------CFPDLVRILAILLNRRKSVSSSRKESS 146 (191)
Q Consensus 96 ~~~~~-------~~-~~~fDvIi~~d~ly~~~---------------------~~~~ll~~l~~ll~~~g~~~~~~~~~~ 146 (191)
..... .. .++.|+++.+.-.-... ..-.+...+..+++.+++...++.++.
T Consensus 72 ~~~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~ 151 (270)
T KOG0725|consen 72 EVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSV 151 (270)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 32110 11 35788888644333221 123344455567777655555555544
No 320
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.35 E-value=1.8 Score=36.23 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=45.0
Q ss_pred CcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC-C
Q 038343 24 KSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES-G 100 (191)
Q Consensus 24 ~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~-~ 100 (191)
++||=|||| .| .....+++.+..+|+..|.+.+....+..+.. .++++..+|..+...- .
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----------------~~v~~~~vD~~d~~al~~ 64 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----------------GKVEALQVDAADVDALVA 64 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----------------ccceeEEecccChHHHHH
Confidence 479999997 55 33335677775699999998776655543321 2466777776655321 1
Q ss_pred CCCCCCCEEEEcc
Q 038343 101 LSAFVPEIILGAD 113 (191)
Q Consensus 101 ~~~~~fDvIi~~d 113 (191)
+- ..+|+||.+-
T Consensus 65 li-~~~d~VIn~~ 76 (389)
T COG1748 65 LI-KDFDLVINAA 76 (389)
T ss_pred HH-hcCCEEEEeC
Confidence 11 2468888643
No 321
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=86.33 E-value=1.7 Score=34.65 Aligned_cols=93 Identities=11% Similarity=-0.044 Sum_probs=57.4
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
.+..++|.|||.|-.... .....+++.|.+...+.-+++ .+. . .+..-|.-. ...
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~---~~~--------------~--~~~~ad~l~---~p~ 99 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKR---SGG--------------D--NVCRADALK---LPF 99 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhcccccc---CCC--------------c--eeehhhhhc---CCC
Confidence 366899999999832211 111268888887666554432 111 0 111112111 123
Q ss_pred CCCCCCEEEEcccccCCC---ChHHHHHHHHHHhccCCCCc
Q 038343 102 SAFVPEIILGADILYDRS---CFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~---~~~~ll~~l~~ll~~~g~~~ 139 (191)
...+||..+..-++++.. .-..+++.+.+.++|+|...
T Consensus 100 ~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 100 REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 446899999999999765 45677888888999999844
No 322
>PRK07904 short chain dehydrogenase; Provisional
Probab=86.07 E-value=13 Score=28.70 Aligned_cols=78 Identities=6% Similarity=0.010 Sum_probs=44.6
Q ss_pred CCCcEEEeCCCccHHHH---HHHhcCCCeEEEEcCChHH-HHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGI---CLAHVKASKVTLTDGDHLT-LANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~---~la~~g~~~v~~tD~~~~~-l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+++||=.|++.|+-.. .+++.|..+|++++.+++- ++.+.+.++..+. .++.+..+|..+..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-------------~~v~~~~~D~~~~~ 73 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-------------SSVEVIDFDALDTD 73 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-------------CceEEEEecCCChH
Confidence 45678888887663222 3344543489999987664 6555554544321 24666777775543
Q ss_pred cC-----C-CCCCCCCEEEEc
Q 038343 98 ES-----G-LSAFVPEIILGA 112 (191)
Q Consensus 98 ~~-----~-~~~~~fDvIi~~ 112 (191)
.- . ...+..|+++.+
T Consensus 74 ~~~~~~~~~~~~g~id~li~~ 94 (253)
T PRK07904 74 SHPKVIDAAFAGGDVDVAIVA 94 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEe
Confidence 20 0 112478987753
No 323
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.04 E-value=2.7 Score=31.19 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=56.6
Q ss_pred EEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCC----CCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 26 CFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLS----TDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 26 VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~----~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
|-=+|+| -| .++..++..|. +|++.|.+++.++.+++.+..+-.. .............++. +.....
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-----~~~dl~- 74 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-----FTTDLE- 74 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-----EESSGG-
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-----cccCHH-
Confidence 4557887 33 44445666776 9999999999998887766542110 0000000000001122 111111
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTN 158 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (191)
.. ...|+|+=+ +..+.+.-..+++.+.+++.|+ +++.+...+.+....++.-
T Consensus 75 ~~--~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~----~ilasnTSsl~i~~la~~~ 126 (180)
T PF02737_consen 75 EA--VDADLVIEA-IPEDLELKQELFAELDEICPPD----TILASNTSSLSISELAAAL 126 (180)
T ss_dssp GG--CTESEEEE--S-SSHHHHHHHHHHHHCCS-TT----SEEEE--SSS-HHHHHTTS
T ss_pred HH--hhhheehhh-ccccHHHHHHHHHHHHHHhCCC----ceEEecCCCCCHHHHHhcc
Confidence 11 157888753 2223334456666666666666 4555666666665555553
No 324
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.01 E-value=1.9 Score=34.04 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.9
Q ss_pred CCCCcEEEeCCCccHHHHHHHhcC------CCeEEEEcCC
Q 038343 21 FSNKSCFEVGSGVGLVGICLAHVK------ASKVTLTDGD 54 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~la~~g------~~~v~~tD~~ 54 (191)
.++..++|+|||.|.++.+++..- ...++++|..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 456689999999999998777642 3489999974
No 325
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.01 E-value=14 Score=28.75 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=47.8
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++.+|=.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+..... .++.+...|..+..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESN-------------VDVSYIVADLTKRE 71 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcC-------------CceEEEEecCCCHH
Confidence 467788888887663 3445666787 899999988777666655433210 23555666665542
Q ss_pred cCC------CCCCCCCEEEEcc
Q 038343 98 ESG------LSAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~------~~~~~fDvIi~~d 113 (191)
... ..-+..|+++.+-
T Consensus 72 ~i~~~~~~~~~~g~iD~lv~na 93 (263)
T PRK08339 72 DLERTVKELKNIGEPDIFFFST 93 (263)
T ss_pred HHHHHHHHHHhhCCCcEEEECC
Confidence 110 0124688887643
No 326
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.92 E-value=1.6 Score=37.23 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=53.5
Q ss_pred CCCCCcEEEeCCCccHHHHHH---HhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGICL---AHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~l---a~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.+....++++|+|.|.-.-++ ...-...|+.+|.+..|+.....+... +... ..+.+..+.+-..
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~-----------g~~~v~~~~~~r~ 265 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHI-----------GEPIVRKLVFHRQ 265 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhc-----------Cchhccccchhcc
Confidence 445557888988866322222 222234899999999998888776643 1110 1111222111111
Q ss_pred CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHH
Q 038343 97 SESGLSAFVPEIILGADILYDRSCFPDLVRILAIL 131 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~l 131 (191)
.-.......||+||++..++....-..=+.....+
T Consensus 266 ~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~ 300 (491)
T KOG2539|consen 266 RLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESL 300 (491)
T ss_pred cCCCCcccceeeEEeeeeeeccCCchhhhhhhHHH
Confidence 00111234699999999998765444333333333
No 327
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.75 E-value=2.7 Score=34.97 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=27.9
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCC
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGD 54 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~ 54 (191)
+.+.+|+=+||| .| .+...+++.|..+++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467799999998 55 45568888999999999987
No 328
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.65 E-value=14 Score=30.04 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=48.2
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.++++||=.|++.|+ +...+++.|+ +|++++.++..++.+.+.+...+ .++.+...|..+..
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g--------------~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG--------------GEALAVVADVADAE 70 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--------------CcEEEEEecCCCHH
Confidence 456788888876553 2334566777 89999998877776666555433 23555666765543
Q ss_pred cCC-------CCCCCCCEEEEccc
Q 038343 98 ESG-------LSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ 114 (191)
.-. ..-++.|++|.+--
T Consensus 71 ~v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 71 AVQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCC
Confidence 210 01246899886543
No 329
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=85.59 E-value=10 Score=30.42 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=27.4
Q ss_pred CCCCCcEEEeCCCccHHHH--HHHhcCCCeEEEEcCChH
Q 038343 20 IFSNKSCFEVGSGVGLVGI--CLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~--~la~~g~~~v~~tD~~~~ 56 (191)
..+++++|=||||--.-++ .++..|.++++.++.+++
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 3567899999999544443 456678889999998754
No 330
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=84.98 E-value=6.5 Score=31.81 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=40.2
Q ss_pred hCCCCCCCCcEEEeCCCccHHHH-HHHhcCC-CeEEEEcCChHHHHHHHHHHHHhc
Q 038343 16 SFPEIFSNKSCFEVGSGVGLVGI-CLAHVKA-SKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 16 ~~~~~~~~~~VLElG~GtG~~~~-~la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
......++...+|.-=|.|.-+. .+.+++. .++++.|.++.+++.+++....+.
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 33334466799999888876666 5555542 379999999999999998776654
No 331
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=84.43 E-value=5.7 Score=31.48 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=45.9
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
|.+.+... ...++..|||--+|+|.+++++.+.|- .+++.|++++-++.+.+.+....
T Consensus 211 l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 211 LIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred HHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhhc
Confidence 33333333 456788999999999999999998875 89999999999988887776544
No 332
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.43 E-value=3.6 Score=34.05 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=28.4
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+.+.+||=+||| .| .+...++..|.++++.+|.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467799999999 56 455588889999999999864
No 333
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=84.08 E-value=1.8 Score=33.02 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=35.5
Q ss_pred CcEEEeCCCccHHHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhc
Q 038343 24 KSCFEVGSGVGLVGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
-.+.|||||-|-+-+.++-..+. .+.+.++-..+-+.+++.|.+-.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 36899999999777777766443 78888887788888888776544
No 334
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.67 E-value=4.9 Score=33.35 Aligned_cols=44 Identities=25% Similarity=0.215 Sum_probs=32.6
Q ss_pred CCCCCcEEEeCCCc-cHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 20 IFSNKSCFEVGSGV-GLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 20 ~~~~~~VLElG~Gt-G~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
..++.+||.+|+|+ |...+.+++ .|..+++++|.+++.++.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 44678999999885 766665544 565569999999888777765
No 335
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.65 E-value=18 Score=27.76 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCCcEEEeCCCccHHHH----HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGI----CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~----~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
+.+++||=.|+..| +|. .+++.|. +|++++.++..++.+...++..+ .++.+...|..+.
T Consensus 8 ~~~k~vlItGa~g~-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--------------~~~~~~~~D~~~~ 71 (255)
T PRK07523 8 LTGRRALVTGSSQG-IGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG--------------LSAHALAFDVTDH 71 (255)
T ss_pred CCCCEEEEECCcch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--------------ceEEEEEccCCCH
Confidence 46788998886443 333 3445676 89999998876666555554322 2355566666543
Q ss_pred CcCC-------CCCCCCCEEEEcccc
Q 038343 97 SESG-------LSAFVPEIILGADIL 115 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d~l 115 (191)
.... ..-++.|+|+.+--.
T Consensus 72 ~~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 72 DAVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 2110 012458888865433
No 336
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=83.63 E-value=18 Score=27.74 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=47.2
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.++..++.+...+...+ ..+.....|+.+..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~ 71 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEG--------------IKAHAAPFNVTHKQ 71 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEecCCCCHH
Confidence 357788888877653 3334556676 89999998776665554443322 23455666765543
Q ss_pred cCC-------CCCCCCCEEEEccc
Q 038343 98 ESG-------LSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ 114 (191)
... -..+++|+|+.+--
T Consensus 72 ~~~~~~~~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 72 EVEAAIEHIEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 110 01246899887544
No 337
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.56 E-value=4 Score=32.83 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=39.6
Q ss_pred CCCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 20 IFSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 20 ~~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
...|+.||==|+|.| .+++.+|++|+ ++...|++.+..+...+.++.++
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC
Confidence 457888999999988 56667888988 89999999988887777776654
No 338
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=83.28 E-value=2.5 Score=31.55 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=23.6
Q ss_pred cEEEeCCC-ccH-HHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 25 SCFEVGSG-VGL-VGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 25 ~VLElG~G-tG~-~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
+|-=+|.| .|+ ++..+|..|. +|+++|.+++.++.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHh
Confidence 45556777 664 4447777886 9999999998776654
No 339
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=83.15 E-value=6.2 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.1
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+||=+||| .| -+...++..|.++++.+|.+.-
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 47888998 56 3444778889889999997643
No 340
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=82.80 E-value=22 Score=28.20 Aligned_cols=102 Identities=17% Similarity=0.050 Sum_probs=56.7
Q ss_pred CCCcEEEeCCCccHHH-HH---HHhcCC-CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 22 SNKSCFEVGSGVGLVG-IC---LAHVKA-SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~-~~---la~~g~-~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.....+|||+|+..=. +. ++..|. .+++.+|++...|....+.+...-.. -.+.....|++..
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~------------l~v~~l~~~~~~~ 145 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG------------LEVNALCGDYELA 145 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC------------CeEeehhhhHHHH
Confidence 4678999999977433 33 233332 48999999998887655544433221 1233333443322
Q ss_pred CcCCCCCCCCCEE-EEcccc--cCCCChHHHHHHHHHHhccCC
Q 038343 97 SESGLSAFVPEII-LGADIL--YDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 97 ~~~~~~~~~fDvI-i~~d~l--y~~~~~~~ll~~l~~ll~~~g 136 (191)
.. .++..+--++ +....+ +.+..-..++..++..++||-
T Consensus 146 La-~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 146 LA-ELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred Hh-cccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 21 1122222222 222233 245567778999999999983
No 341
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=82.38 E-value=3.3 Score=32.86 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=35.3
Q ss_pred HHHHHHHhhC-----CCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcC
Q 038343 8 LLLSEFILSF-----PEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDG 53 (191)
Q Consensus 8 ~~L~~~l~~~-----~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~ 53 (191)
..|-.|+... .+..+++.+.||-+|||++|..+-+.|. .|++-|+
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDl 57 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDL 57 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcc-hhhhchH
Confidence 4555666542 3455788999999999999999998876 7988887
No 342
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.36 E-value=0.91 Score=37.83 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=55.8
Q ss_pred CCCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 21 FSNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
-++....|||+|.|-+-. .++..+++.=++.++....-+.+..|.+.+........ .....+.....++-+....
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG----k~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG----KKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC----CCcCceeecccccCCHHHH
Confidence 356689999999995555 44444554555555433333333333322211100000 0113444455554433211
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccC
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRR 135 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~ 135 (191)
..-....++|+.+.+.++++..-.+- .+..=+++|
T Consensus 267 ~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~g 301 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDG 301 (419)
T ss_pred HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCc
Confidence 11223689999999998877554444 444444555
No 343
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.31 E-value=5.4 Score=33.22 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+.+.+||=+||| .| .+...++..|..+++.+|.+.-
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 467799999999 56 4555788889889999998743
No 344
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.31 E-value=13 Score=31.77 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=31.2
Q ss_pred CCCCCcEEEeCCC-ccHH-HHHHHhcCCCeEEEEcCChH-HHHHHHHHHHHhc
Q 038343 20 IFSNKSCFEVGSG-VGLV-GICLAHVKASKVTLTDGDHL-TLANMRSNLELNQ 69 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~-~~~la~~g~~~v~~tD~~~~-~l~~~~~n~~~n~ 69 (191)
.+.+++|+=+|+| +|.. +..+++.|. +|+++|..+. ......+.++..+
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~g 64 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALG 64 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcC
Confidence 4567799999998 6643 336667777 8999996543 3333334444444
No 345
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.16 E-value=5 Score=28.46 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=27.7
Q ss_pred EeCCCcc--HHHHHHH--hcC-CCeEEEEcCChHHHHHHHHH--HHHhcC
Q 038343 28 EVGSGVG--LVGICLA--HVK-ASKVTLTDGDHLTLANMRSN--LELNQL 70 (191)
Q Consensus 28 ElG~GtG--~~~~~la--~~g-~~~v~~tD~~~~~l~~~~~n--~~~n~~ 70 (191)
|+|+..| .....+. ..+ ..+|+++|.+|..++.+++| +..|..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 7999999 4444332 333 34899999999999999999 777743
No 346
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=82.14 E-value=5.4 Score=27.95 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=33.8
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.+++++||=+|+| .| .....+...|+++++.+..+.+-.+.+.+.+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 4678999999998 44 4444677789988999999876555554443
No 347
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=82.10 E-value=11 Score=29.98 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
...+++||=+|+| .| .....++..|..+|+.++.+.+-.+.+.+.+
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~ 167 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLF 167 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 3567899999997 33 2233456678669999999877665555443
No 348
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=81.78 E-value=3.1 Score=34.15 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=13.8
Q ss_pred CCCcEEEeCCCccHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLA 41 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la 41 (191)
...+|+|+||.+|-.++.+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~ 35 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAV 35 (334)
T ss_dssp TEEEEEEES--SSHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHH
Confidence 34489999999998887544
No 349
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=81.50 E-value=8.7 Score=30.32 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=56.2
Q ss_pred CcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCC----CCCc-
Q 038343 24 KSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWE----SASE- 98 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~----~~~~- 98 (191)
..|+.||||-=.-..-+.......++=+|. |++++.=++.+...+.. ...+......|.. +...
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~----------~~~~~~~v~~Dl~~~w~~~L~~ 151 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAE----------PPAHRRAVPVDLRQDWPAALAA 151 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCC----------CCCceEEeccCchhhHHHHHHh
Confidence 369999999654443332221125666666 66766656666554322 1133444555543 2111
Q ss_pred CCCCCCCCCEEEEcccccCC--CChHHHHHHHHHHhccCC
Q 038343 99 SGLSAFVPEIILGADILYDR--SCFPDLVRILAILLNRRK 136 (191)
Q Consensus 99 ~~~~~~~fDvIi~~d~ly~~--~~~~~ll~~l~~ll~~~g 136 (191)
..+.....-++++-.++++. +....+++.+..+..|++
T Consensus 152 ~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs 191 (260)
T TIGR00027 152 AGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGS 191 (260)
T ss_pred CCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCc
Confidence 11223345677877777654 456778888887776664
No 350
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=81.32 E-value=2.6 Score=31.73 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=26.9
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
..+.+||=+||| .| .+...++..|.++++.+|.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 456789999998 44 444577888999999999763
No 351
>PRK08267 short chain dehydrogenase; Provisional
Probab=81.16 E-value=17 Score=27.97 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=42.6
Q ss_pred CcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 24 KSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 24 ~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+++|=.|++.|+ +...+++.|+ +|++++.++..++.+...+. + .++.+...|..+.....
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~--------------~~~~~~~~D~~~~~~v~ 64 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--A--------------GNAWTGALDVTDRAAWD 64 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--C--------------CceEEEEecCCCHHHHH
Confidence 357777766542 2334555676 89999988876666544332 1 23566677765543110
Q ss_pred -----C-C--CCCCCEEEEcc
Q 038343 101 -----L-S--AFVPEIILGAD 113 (191)
Q Consensus 101 -----~-~--~~~fDvIi~~d 113 (191)
. . .+++|+|+.+-
T Consensus 65 ~~~~~~~~~~~~~id~vi~~a 85 (260)
T PRK08267 65 AALADFAAATGGRLDVLFNNA 85 (260)
T ss_pred HHHHHHHHHcCCCCCEEEECC
Confidence 0 0 35689888643
No 352
>PRK06153 hypothetical protein; Provisional
Probab=81.09 E-value=2.2 Score=35.68 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=29.8
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+++.+|+=+||| +| .+...+++.|..+++++|.+.-
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 466799999999 77 5666899999999999998743
No 353
>PRK05650 short chain dehydrogenase; Provisional
Probab=80.84 E-value=24 Score=27.35 Aligned_cols=75 Identities=12% Similarity=-0.028 Sum_probs=42.2
Q ss_pred cEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC-
Q 038343 25 SCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG- 100 (191)
Q Consensus 25 ~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~- 100 (191)
+||=.|+..|+ +...+++.|. +|++++.+..-++.+...+...+ .++.+...|+.+.....
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~~~~~ 66 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAG--------------GDGFYQRCDVRDYSQLTA 66 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEccCCCHHHHHH
Confidence 56766765443 2334455676 89999988766665554444332 23556667765432110
Q ss_pred -C-----CCCCCCEEEEccc
Q 038343 101 -L-----SAFVPEIILGADI 114 (191)
Q Consensus 101 -~-----~~~~fDvIi~~d~ 114 (191)
. ..+++|++|.+--
T Consensus 67 ~~~~i~~~~~~id~lI~~ag 86 (270)
T PRK05650 67 LAQACEEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 0 1146898887543
No 354
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.49 E-value=5.6 Score=28.24 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=48.2
Q ss_pred cEEEeCCCccH---HHHHHHhcCCCeEEEEcCC--hHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 25 SCFEVGSGVGL---VGICLAHVKASKVTLTDGD--HLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 25 ~VLElG~GtG~---~~~~la~~g~~~v~~tD~~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++|=.|+++|+ ++..+++.|...|+++..+ ....+.+...++..+ .++.+...|..+...-
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--------------~~~~~~~~D~~~~~~~ 67 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--------------AKITFIECDLSDPESI 67 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--------------SEEEEEESETTSHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--------------cccccccccccccccc
Confidence 56667777662 3445555677789999987 555555555555433 3577777776544211
Q ss_pred C-------CCCCCCCEEEEcccccCC
Q 038343 100 G-------LSAFVPEIILGADILYDR 118 (191)
Q Consensus 100 ~-------~~~~~fDvIi~~d~ly~~ 118 (191)
. ...++.|++|.+--+...
T Consensus 68 ~~~~~~~~~~~~~ld~li~~ag~~~~ 93 (167)
T PF00106_consen 68 RALIEEVIKRFGPLDILINNAGIFSD 93 (167)
T ss_dssp HHHHHHHHHHHSSESEEEEECSCTTS
T ss_pred cccccccccccccccccccccccccc
Confidence 0 123579999976555543
No 355
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.40 E-value=3.3 Score=34.69 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=28.3
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
+|--+|+| .| ..+..++..|. .|+++|+++.=++.++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GH-eVv~vDid~~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGH-EVVCVDIDESKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHh
Confidence 46667777 67 45667888886 9999999988776664
No 356
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=80.37 E-value=2.3 Score=32.10 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=26.9
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
..+.+|+=+||| .| .+...++..|.++++.+|.+.
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 356689999999 45 444477888998999999763
No 357
>PRK05867 short chain dehydrogenase; Provisional
Probab=80.31 E-value=15 Score=28.23 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=48.3
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.+++.++.+...+...+ .++.....|..+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~ 71 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--------------GKVVPVCCDVSQHQ 71 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEEccCCCHH
Confidence 467889999987663 3335566777 89999998877766655554332 23455666665432
Q ss_pred cCC-----C--CCCCCCEEEEcccc
Q 038343 98 ESG-----L--SAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~-----~--~~~~fDvIi~~d~l 115 (191)
... . .-++.|+++.+--+
T Consensus 72 ~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 72 QVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 110 0 11468888865433
No 358
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=80.00 E-value=1.5 Score=35.51 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=31.9
Q ss_pred CCCCcEEEeCCCccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
.++..++|.--|.|--+. .+.+.+..++++.|.++.+++.+++++.
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 356789999999886666 4555555699999999999988876654
No 359
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.76 E-value=9.5 Score=30.96 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=30.6
Q ss_pred CCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.++.+||=.|+| .|...+.+++ .|+++|+++|.+++-++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 367889888876 5555554444 577679999998877766653
No 360
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=79.59 E-value=5 Score=31.10 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=37.4
Q ss_pred CCCCCCCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 17 FPEIFSNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 17 ~~~~~~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+.....+.-|.|+|.|.|.+...+...|+++...++.+...+.-++.-.+
T Consensus 45 ~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~E 94 (326)
T KOG0821|consen 45 KAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSE 94 (326)
T ss_pred hccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhh
Confidence 34445666899999999988887777777788888888877666654433
No 361
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=79.55 E-value=13 Score=27.53 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=29.6
Q ss_pred CCCCCcEEEeCC-C-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 20 IFSNKSCFEVGS-G-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 20 ~~~~~~VLElG~-G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.+++++++=+|+ | .| .....+++.|. +|++++.+++-++.+.+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSL 72 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHH
Confidence 457889999986 4 45 33345566665 8999988766555544433
No 362
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=78.16 E-value=14 Score=29.51 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=29.4
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANM 61 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~ 61 (191)
.++++||=||+| +| .+...++..|+++++.++.+++-.+.+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L 165 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL 165 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 467899999999 44 333356678888999999876544433
No 363
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=77.86 E-value=8.1 Score=31.85 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=34.3
Q ss_pred CCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~ 63 (191)
..++.+|.=+||| .|+..+.-++ .|+.+++++|+++.-++.+++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 3467788888888 7888875444 578899999999988777753
No 364
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.45 E-value=5.6 Score=32.38 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=29.7
Q ss_pred CCCCcEEEeCCC-ccHHHHHHHh--cCCCeEEEEcCChHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGICLAH--VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~~la~--~g~~~v~~tD~~~~~l~~~~ 62 (191)
.++.+||=+||| .|+..+.+++ .|+.+|+++|.+++-++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 467899999987 6666554443 45568999999877666654
No 365
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.34 E-value=19 Score=27.25 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=29.7
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+++++||=.|++.|+ +...+++.|. +|++++.++..++.+...+.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHH
Confidence 456789999875542 2224455676 89999998876665554443
No 366
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=77.23 E-value=14 Score=29.10 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=28.6
Q ss_pred CCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.++.+||=.|+| .|...+.+++ .|+..|+++|.++.-++.++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~ 162 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL 162 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 478889988876 5555554443 57756999998876665554
No 367
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=77.14 E-value=17 Score=28.96 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=31.7
Q ss_pred CCCCcEEEeCCC-ccH-HHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGL-VGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~-~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
....+||=+||| .|. +...++..|.++++..|.+.-....+..|+
T Consensus 24 L~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQf 70 (287)
T PTZ00245 24 LMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNY 70 (287)
T ss_pred HhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccc
Confidence 456689999997 553 444777788889999998765554444443
No 368
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=77.12 E-value=12 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=24.2
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLT 57 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~ 57 (191)
+||=+||| .| -+...++..|.++++.+|.+.--
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 47888988 55 34446777888999999976433
No 369
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.90 E-value=29 Score=26.13 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=44.0
Q ss_pred CCCCcEEEeCCCccHHHH----HHHhcCCCeEEEE-cCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 21 FSNKSCFEVGSGVGLVGI----CLAHVKASKVTLT-DGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~----~la~~g~~~v~~t-D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
+.++++|=.|+. |.+|. .+++.|+ +++.+ +.++..++.+...+...+ .++.+...|..+
T Consensus 3 ~~~~~ilI~Gas-g~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~ 66 (247)
T PRK05565 3 LMGKVAIVTGAS-GGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEG--------------GDAIAVKADVSS 66 (247)
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--------------CeEEEEECCCCC
Confidence 345678877753 44444 3445576 78888 887766655554443322 246667777765
Q ss_pred CCcCC--C-----CCCCCCEEEEccc
Q 038343 96 ASESG--L-----SAFVPEIILGADI 114 (191)
Q Consensus 96 ~~~~~--~-----~~~~fDvIi~~d~ 114 (191)
...-. . .-+++|+|+.+--
T Consensus 67 ~~~~~~~~~~~~~~~~~id~vi~~ag 92 (247)
T PRK05565 67 EEDVENLVEQIVEKFGKIDILVNNAG 92 (247)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 43210 0 1136899886543
No 370
>PRK08328 hypothetical protein; Provisional
Probab=76.86 E-value=2.8 Score=32.42 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=28.7
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
..+.+|+=+||| .| .+...+++.|..+++.+|.+.-
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 466799999999 56 4555888899999999997643
No 371
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.71 E-value=21 Score=28.00 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=45.9
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|+++|+ +...+++.|+ +|+++|.++..++.+.+.+...+ .++.+...|..+..
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--------------~~~~~~~~Dv~d~~ 68 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--------------FDVHGVMCDVRHRE 68 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEeCCCCCHH
Confidence 467788888877663 3334556677 79999998776665544443322 23555666665432
Q ss_pred cCC-------CCCCCCCEEEEcc
Q 038343 98 ESG-------LSAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d 113 (191)
.-. ..-++.|++|.+-
T Consensus 69 ~v~~~~~~~~~~~g~id~li~nA 91 (275)
T PRK05876 69 EVTHLADEAFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 110 0113578887643
No 372
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=76.66 E-value=11 Score=31.96 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
..+|++|+=+|+| .|.... .+...|+ +|+++|.++.-+..++
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHH
Confidence 4689999999999 675444 4455787 8999999876655543
No 373
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=76.47 E-value=3.3 Score=28.89 Aligned_cols=33 Identities=42% Similarity=0.568 Sum_probs=26.0
Q ss_pred CCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 23 NKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 23 ~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
+.+|+=+||| .| .+...+++.|..+++.+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999998 66 566688888999999999753
No 374
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.32 E-value=16 Score=30.99 Aligned_cols=34 Identities=38% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCCCcEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSGV-G-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~ 55 (191)
..+++|+=+|+|. | ..+..+++.|+ .|+++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 3577899999884 3 23335666787 899999864
No 375
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=76.14 E-value=17 Score=31.86 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=68.2
Q ss_pred CcEEEeCCCccHHHH---HHHhc--CCCeEEEEcCChHHHHHHHH-HHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 24 KSCFEVGSGVGLVGI---CLAHV--KASKVTLTDGDHLTLANMRS-NLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 24 ~~VLElG~GtG~~~~---~la~~--g~~~v~~tD~~~~~l~~~~~-n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..|+=+|+|-|=+.- -++.. ..-++++++.+|.++-.++. |.+-. ..++.+...|+....
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W--------------~~~Vtii~~DMR~w~ 434 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW--------------DNRVTIISSDMRKWN 434 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh--------------cCeeEEEeccccccC
Confidence 367888999993332 22222 11289999999998876643 22222 256777777765443
Q ss_pred cCCCCCCCCCEEEEcccc---cCCCChHHHHHHHHHHhccCCCCc----cccccCCCCccc
Q 038343 98 ESGLSAFVPEIILGADIL---YDRSCFPDLVRILAILLNRRKSVS----SSRKESSKGFTL 151 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~l---y~~~~~~~ll~~l~~ll~~~g~~~----~~~~~~~~~~~~ 151 (191)
. +..+.|++++ +.+ =+.+.-+..|.-+.++|||.|-.. ..+.+|-.+.-+
T Consensus 435 a---p~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l 491 (649)
T KOG0822|consen 435 A---PREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL 491 (649)
T ss_pred C---chhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHH
Confidence 1 1246888775 333 355667788999999999996543 344445433333
No 376
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=75.86 E-value=27 Score=33.24 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=66.7
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCC-ccc----ccccCCCCeeEEEeecC
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTD-TSL----LESYEDPNVVQCVHLPW 93 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~-~~~----~~~~~~~~~i~~~~ldw 93 (191)
+...+||=+||| .| -++..++..|.++++..|.+.-....+.+++-....... ... .....-...+.+...+-
T Consensus 22 L~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 101 (1008)
T TIGR01408 22 MAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSV 101 (1008)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecc
Confidence 356689999997 44 344466778888999999764332222211100000000 000 00000001233333221
Q ss_pred CCCCcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCCC
Q 038343 94 ESASESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTND 159 (191)
Q Consensus 94 ~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (191)
......+ ..||+|+.++. .. .....+..+.+..+....+..+..++....-|+.-|+
T Consensus 102 -~l~~e~l--~~fdvVV~t~~-----~~-~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~ 158 (1008)
T TIGR01408 102 -PFNEEFL--DKFQCVVLTEM-----SL-PLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGD 158 (1008)
T ss_pred -cCCHHHH--cCCCEEEECCC-----CH-HHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCC
Confidence 1111112 36999998743 22 3344677787777655556667777777777776665
No 377
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.06 E-value=26 Score=26.75 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=47.4
Q ss_pred CCCCcEEEeCCCccHH---HHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGLV---GICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~---~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+- ...+++.|+ +|++++.++.-++.+.+.+...+ .++.+...|..+..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~ 69 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--------------GEALFVACDVTRDA 69 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEcCCCCHH
Confidence 4577899998765532 224555676 89999998877666555554332 24566667765432
Q ss_pred cCC--C-----CCCCCCEEEEccc
Q 038343 98 ESG--L-----SAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d~ 114 (191)
.-. + .-++.|+|+.+--
T Consensus 70 ~i~~~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 70 EVKALVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 100 0 1146798886543
No 378
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=74.92 E-value=21 Score=26.84 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCCCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 18 PEIFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
....++++|+=+|.| .| .++..+.+.|+ +|+++|.++..++.++.
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 455688999999988 33 33345566787 89999999876665544
No 379
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.53 E-value=50 Score=27.68 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=54.2
Q ss_pred cEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC
Q 038343 25 SCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF 104 (191)
Q Consensus 25 ~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~ 104 (191)
+||=++=.-|.++..++..++ ...+|. --.-..+++|++.|++..+ .+. .++-... ++ .
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~--~~~~ds-~~~~~~~~~n~~~n~~~~~-----------~~~--~~~~~~~----~~-~ 105 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP--YSIGDS-YISELATRENLRLNGIDES-----------SVK--FLDSTAD----YP-Q 105 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC--CeeehH-HHHHHHHHHHHHHcCCCcc-----------cce--eeccccc----cc-C
Confidence 799999999999998886554 234664 3344567889999986521 122 2221111 22 3
Q ss_pred CCCEEEEcccccCCCC---hHHHHHHHHHHhccCC
Q 038343 105 VPEIILGADILYDRSC---FPDLVRILAILLNRRK 136 (191)
Q Consensus 105 ~fDvIi~~d~ly~~~~---~~~ll~~l~~ll~~~g 136 (191)
.+|+|+. |.+.. .+..+..+...+.+++
T Consensus 106 ~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~~~ 136 (378)
T PRK15001 106 QPGVVLI----KVPKTLALLEQQLRALRKVVTSDT 136 (378)
T ss_pred CCCEEEE----EeCCCHHHHHHHHHHHHhhCCCCC
Confidence 5899874 55554 4455666667777774
No 380
>PTZ00357 methyltransferase; Provisional
Probab=74.48 E-value=38 Score=31.02 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=57.9
Q ss_pred cEEEeCCCcc-HHHHHHH---hcCCC-eEEEEcCChHHHHHHHHHH---HHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 25 SCFEVGSGVG-LVGICLA---HVKAS-KVTLTDGDHLTLANMRSNL---ELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 25 ~VLElG~GtG-~~~~~la---~~g~~-~v~~tD~~~~~l~~~~~n~---~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.|+=+|+|-| ++...+. ..|.+ ++++++.|+.+.-.++.+. ..+.-.. ....+.++++.-|....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~-------~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLA-------YTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccccccccc-------ccCCCeEEEEeCccccc
Confidence 5899999999 5544332 23433 8999999966443333322 2221000 00124577777765443
Q ss_pred CcCC----C----CCCCCCEEEE--cccccCCCChHHHHHHHHHHhcc
Q 038343 97 SESG----L----SAFVPEIILG--ADILYDRSCFPDLVRILAILLNR 134 (191)
Q Consensus 97 ~~~~----~----~~~~fDvIi~--~d~ly~~~~~~~ll~~l~~ll~~ 134 (191)
.... . .-+++|+||+ -.-|=+.+.-+..|.-+.++||+
T Consensus 776 ~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 776 ATAAENGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred ccccccccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 2110 0 1137999986 22333556667778888888876
No 381
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=74.22 E-value=40 Score=29.63 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=24.9
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
+|+=+|+| .| .++..+.+.|. .|+.+|.|++.++.++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~ 457 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELR 457 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHH
Confidence 56666666 34 33334555565 8999999998776665
No 382
>PRK07063 short chain dehydrogenase; Provisional
Probab=74.05 E-value=32 Score=26.38 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=48.0
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.++..++.+.+.+...... .++.+...|..+..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~------------~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAG------------ARVLAVPADVTDAA 71 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCC------------ceEEEEEccCCCHH
Confidence 467789988887653 3334566777 8999999887776666555431111 24566677765542
Q ss_pred cCC--C-----CCCCCCEEEEcc
Q 038343 98 ESG--L-----SAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d 113 (191)
... + .-+..|+++.+-
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~a 94 (260)
T PRK07063 72 SVAAAVAAAEEAFGPLDVLVNNA 94 (260)
T ss_pred HHHHHHHHHHHHhCCCcEEEECC
Confidence 110 0 114688888644
No 383
>PRK06139 short chain dehydrogenase; Provisional
Probab=73.46 E-value=26 Score=28.54 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=48.7
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..+++||=.|++.|+ +...+++.|+ +|++++.+++.++.+.+.++..+ .++.+...|..+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g--------------~~~~~~~~Dv~d~~ 69 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALG--------------AEVLVVPTDVTDAD 69 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCCHH
Confidence 456788888876553 3334566777 89999999888877766665443 23555666765432
Q ss_pred cCC-------CCCCCCCEEEEcc
Q 038343 98 ESG-------LSAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d 113 (191)
.-. -..+++|++|.+-
T Consensus 70 ~v~~~~~~~~~~~g~iD~lVnnA 92 (330)
T PRK06139 70 QVKALATQAASFGGRIDVWVNNV 92 (330)
T ss_pred HHHHHHHHHHHhcCCCCEEEECC
Confidence 110 0124688888643
No 384
>PRK08862 short chain dehydrogenase; Provisional
Probab=73.45 E-value=28 Score=26.52 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=34.3
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHh
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELN 68 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n 68 (191)
++++++|=.|++.|+ ++..+++.|+ +|++++.+++.++.+.+.+...
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~ 52 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSAL 52 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhc
Confidence 357789999988874 4445667787 8999999888777666555443
No 385
>PRK09242 tropinone reductase; Provisional
Probab=72.92 E-value=37 Score=26.01 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=48.2
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
.+.++++|=.|++.|+ +...+++.|+ +|++++.+++.++.+..++...... .++.+...|..+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~------------~~~~~~~~Dl~~~ 72 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPE------------REVHGLAADVSDD 72 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCC------------CeEEEEECCCCCH
Confidence 3467889999886653 3334555677 8999999887777666655443111 2455566666543
Q ss_pred CcC-----C--CCCCCCCEEEEcc
Q 038343 97 SES-----G--LSAFVPEIILGAD 113 (191)
Q Consensus 97 ~~~-----~--~~~~~fDvIi~~d 113 (191)
... . -.-+++|+|+.+-
T Consensus 73 ~~~~~~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 73 EDRRAILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 210 0 0124688887644
No 386
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=72.89 E-value=22 Score=28.37 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
.++++|+=|||| .| .....++..|.++++.+|.+.+-.+.+.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l 171 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADEL 171 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 467899999999 44 3333566788889999999876555554443
No 387
>PRK07035 short chain dehydrogenase; Provisional
Probab=72.74 E-value=33 Score=26.17 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=31.3
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+.+++||=.|++.|+ +...+++.|+ +|++++.++..++.+.+.+.
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIV 53 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 456788888888663 3334566677 89999998776666555543
No 388
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=72.62 E-value=7.8 Score=31.32 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=63.9
Q ss_pred CCCcEEEeCCCcc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 22 SNKSCFEVGSGVG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 22 ~~~~VLElG~GtG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
+.++||=+|.|-| +.-....+.-...+...|++..+++..++-...-.... ...++...-.|=.... ..
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy---------~~~~v~l~iGDG~~fl-~~ 190 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY---------EGKKVKLLIGDGFLFL-ED 190 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc---------CCCceEEEeccHHHHH-HH
Confidence 4568999999966 55544444334589999999888887776544322111 1134444444311111 11
Q ss_pred CCCCCCCEEEE--cccccCC--CChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILG--ADILYDR--SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~--~d~ly~~--~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
...++||+||. +|.+-.. --.++....+.+.||++|..+.
T Consensus 191 ~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 191 LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 33568999986 4443311 1256677888889999876553
No 389
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=72.45 E-value=42 Score=25.83 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=28.5
Q ss_pred CCCcEEEeCCCcc----HHHHHHHh-c-CCCeEEEEcCChHHHHHHHHHHHHhcC
Q 038343 22 SNKSCFEVGSGVG----LVGICLAH-V-KASKVTLTDGDHLTLANMRSNLELNQL 70 (191)
Q Consensus 22 ~~~~VLElG~GtG----~~~~~la~-~-g~~~v~~tD~~~~~l~~~~~n~~~n~~ 70 (191)
+-+.++|..|+.| .+++..|. . |. +++++-.++..+...++.+...+.
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccc
Confidence 4457999976643 23333222 2 43 677777777777666666655443
No 390
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.84 E-value=37 Score=25.92 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
.+++||=.|++.|+ ++..++..|. +|++++.++.-++.+...+...+ .++.....|..+...
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~ 68 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--------------RRALAVPTDITDEDQ 68 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--------------CceEEEecCCCCHHH
Confidence 56788888876653 3334566777 89999998876665554443322 235556666654321
Q ss_pred CC--C-----CCCCCCEEEEcccc
Q 038343 99 SG--L-----SAFVPEIILGADIL 115 (191)
Q Consensus 99 ~~--~-----~~~~fDvIi~~d~l 115 (191)
.. + .-++.|+|+.+-..
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 10 0 11467888875433
No 391
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=71.84 E-value=5.5 Score=29.15 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=22.0
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEe-CCC-ccHHHHHHH----hcCCCeEEE
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEV-GSG-VGLVGICLA----HVKASKVTL 50 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLEl-G~G-tG~~~~~la----~~g~~~v~~ 50 (191)
++..+++++.+.....+..+|+=| |.| .|.-|+.++ ..|. .|++
T Consensus 8 Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~-~V~v 57 (169)
T PF03853_consen 8 AGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGY-NVTV 57 (169)
T ss_dssp HHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTC-EEEE
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCC-eEEE
Confidence 566777777665422344455544 444 334444444 4566 4544
No 392
>PRK09291 short chain dehydrogenase; Provisional
Probab=71.64 E-value=25 Score=26.84 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=42.3
Q ss_pred CcEEEeCCCccHHH---HHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 24 KSCFEVGSGVGLVG---ICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 24 ~~VLElG~GtG~~~---~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
++||=.|++.|+-. ..+++.|+ +|++++.++...+.++......+ ..+.+...|+.+...-.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~~~ 67 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG--------------LALRVEKLDLTDAIDRA 67 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CcceEEEeeCCCHHHHH
Confidence 46777777554322 23445676 89999887765555444333322 23566777776543211
Q ss_pred -CCCCCCCEEEEcc
Q 038343 101 -LSAFVPEIILGAD 113 (191)
Q Consensus 101 -~~~~~fDvIi~~d 113 (191)
......|+|+.+-
T Consensus 68 ~~~~~~id~vi~~a 81 (257)
T PRK09291 68 QAAEWDVDVLLNNA 81 (257)
T ss_pred HHhcCCCCEEEECC
Confidence 1123689888753
No 393
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.12 E-value=42 Score=25.24 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=28.1
Q ss_pred CCCcEEEeCCCccHH---HHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLV---GICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 22 ~~~~VLElG~GtG~~---~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
++++||=.|++.|+- ...+++.|. +|++++.+++.++.+.+.+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 49 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTL 49 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 567899998865432 223445676 8999999877665554333
No 394
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=70.98 E-value=48 Score=29.58 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=25.8
Q ss_pred CcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHH
Q 038343 24 KSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 24 ~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
.+|+=+|+| .| .++..+.+.|. .|+++|.|++.++.++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~ 440 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMR 440 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHH
Confidence 356667666 44 33344555565 8999999998887765
No 395
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=70.93 E-value=37 Score=27.51 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=54.7
Q ss_pred cEEEeCCC--ccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 25 SCFEVGSG--VGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 25 ~VLElG~G--tG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
+|+=+|+| .++.+..+++.| ..|++.-.++. ++.++++ ++.... ...+.......-. ....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~i~~-------~~~~~~~~~~~~~----~~~~ 64 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLRIED-------EGGNFTTPVVAAT----DAEA 64 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeEEec-------CCCcccccccccc----Chhh
Confidence 67889999 448888899998 58888888655 5555543 433211 0000000000000 0112
Q ss_pred CCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 103 AFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 103 ~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
...+|+||.+ -.....+..++.+..++++..
T Consensus 65 ~~~~Dlviv~---vKa~q~~~al~~l~~~~~~~t 95 (307)
T COG1893 65 LGPADLVIVT---VKAYQLEEALPSLAPLLGPNT 95 (307)
T ss_pred cCCCCEEEEE---eccccHHHHHHHhhhcCCCCc
Confidence 2479999864 244568889999999998883
No 396
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=70.79 E-value=16 Score=29.96 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=59.1
Q ss_pred CCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
..+|.=||.| .|.-+. ++..+|+ .|+..|.|..-|.++..-. + .++....-......
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f---~--------------~rv~~~~st~~~ie--- 226 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF---G--------------GRVHTLYSTPSNIE--- 226 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh---C--------------ceeEEEEcCHHHHH---
Confidence 4467888888 554444 4455676 8999999977666655322 1 12322222111110
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
..-.+.|+||.+=.+--...+.-+.+.+.+-++||+
T Consensus 227 e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGs 262 (371)
T COG0686 227 EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGS 262 (371)
T ss_pred HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCc
Confidence 011469999998777777777778888889999985
No 397
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=70.39 E-value=42 Score=25.91 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=49.0
Q ss_pred CCCCcEEEeCCCccHH---HHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGLV---GICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~---~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++++++|=.|++.|+- ...++..|+ +|+.++.++..++.+...+...+ .++.+...|..+..
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~ 72 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--------------IEAHGYVCDVTDED 72 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEcCCCCHH
Confidence 4677899999886643 334566777 79999988777766655554332 23556667765443
Q ss_pred cCC-------CCCCCCCEEEEcccc
Q 038343 98 ESG-------LSAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~l 115 (191)
... ..-++.|+++.+--+
T Consensus 73 ~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 73 GVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCC
Confidence 210 011468988865544
No 398
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=70.11 E-value=6 Score=35.40 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=30.1
Q ss_pred CCCCCcEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChH
Q 038343 20 IFSNKSCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 20 ~~~~~~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
.+++.+||=+|||+ | .++..++..|..+++++|.+.-
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~V 373 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKV 373 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEE
Confidence 34677999999994 7 5677999999999999997543
No 399
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=69.93 E-value=27 Score=25.66 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=30.6
Q ss_pred HhhCCCCCCCCcEEEeCCC--ccH-HHHHHHhcCCCeEEEEcCCh
Q 038343 14 ILSFPEIFSNKSCFEVGSG--VGL-VGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 14 l~~~~~~~~~~~VLElG~G--tG~-~~~~la~~g~~~v~~tD~~~ 55 (191)
+.+....+.+++||=+|+| .|. +...+...|+ +|+.++...
T Consensus 35 ~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~ 78 (168)
T cd01080 35 LKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT 78 (168)
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence 3334456789999999999 376 5557777887 799998764
No 400
>PRK07062 short chain dehydrogenase; Provisional
Probab=69.63 E-value=46 Score=25.60 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=47.6
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+|=.|++.|+ ++..+++.|+ +|++++.+++-++.+.+.+...... .++.+...|..+..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~------------~~~~~~~~D~~~~~ 72 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPG------------ARLLAARCDVLDEA 72 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCC------------ceEEEEEecCCCHH
Confidence 467889999987663 3334556677 8999999887766655544332110 24555666765542
Q ss_pred cCC-----C--CCCCCCEEEEcc
Q 038343 98 ESG-----L--SAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~-----~--~~~~fDvIi~~d 113 (191)
... . .-+..|+++.+-
T Consensus 73 ~v~~~~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 73 DVAAFAAAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHHHHHHHhcCCCCEEEECC
Confidence 110 0 124688887644
No 401
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=69.49 E-value=2.9 Score=30.67 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCcEEEeCCCccHHHHHHHhcCCCeEEEEcCCh
Q 038343 23 NKSCFEVGSGVGLVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 23 ~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~ 55 (191)
+++++=+|+..=.+-..+.+.|++++.-+++++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~ 34 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNK 34 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecc
Confidence 568888888876667777778888999999864
No 402
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.39 E-value=12 Score=30.73 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.+|.+|.=+|.| .|+.-+.-+ ..|+++++++|++++=.+.+++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 356667777666 454444333 3588899999999887766653
No 403
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=69.31 E-value=7.5 Score=30.29 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=29.5
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTL 58 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l 58 (191)
.++.+|+=+||| .| .+...+++.|..+++.+|.+.--.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 356789999998 66 455588889999999999865433
No 404
>PRK07478 short chain dehydrogenase; Provisional
Probab=69.29 E-value=42 Score=25.62 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=46.1
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.++..++.+...+...+ .++.+...|..+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~ 68 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--------------GEAVALAGDVRDEA 68 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCHH
Confidence 356788888876653 3335566777 89999998877776655554332 23455566665432
Q ss_pred cCC--C-----CCCCCCEEEEcc
Q 038343 98 ESG--L-----SAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d 113 (191)
... + .-++.|+++.+-
T Consensus 69 ~~~~~~~~~~~~~~~id~li~~a 91 (254)
T PRK07478 69 YAKALVALAVERFGGLDIAFNNA 91 (254)
T ss_pred HHHHHHHHHHHhcCCCCEEEECC
Confidence 110 0 113688887644
No 405
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=68.96 E-value=26 Score=28.14 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=28.6
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=+|+| .|...+.++ ..|+++|++++.+++-++.++
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 34468888888875 444444333 357755999998877665553
No 406
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=68.85 E-value=29 Score=26.36 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=42.2
Q ss_pred CcEEEeCCCccHHHHH----HHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 24 KSCFEVGSGVGLVGIC----LAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 24 ~~VLElG~GtG~~~~~----la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++||=.|++ |.+|.. +++.|. +|++++.++...+.+...+...+ .++.+...|+.+....
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~~ 65 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAG--------------GSVIYLVADVTKEDEI 65 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEECCCCCHHHH
Confidence 356666644 444443 344576 89999998766655554443322 2466677777654310
Q ss_pred -----C--CCCCCCCEEEEccc
Q 038343 100 -----G--LSAFVPEIILGADI 114 (191)
Q Consensus 100 -----~--~~~~~fDvIi~~d~ 114 (191)
. ....+.|+|+.+-.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 66 ADMIAAAAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 0 01235788886543
No 407
>PLN02740 Alcohol dehydrogenase-like
Probab=68.73 E-value=17 Score=30.12 Aligned_cols=44 Identities=25% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=.|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~ 240 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH
Confidence 34568899999876 5555554444 56657999999887766664
No 408
>PRK08265 short chain dehydrogenase; Provisional
Probab=68.63 E-value=44 Score=25.75 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCCcc---HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVG---LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG---~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.| .+...+++.|+ +|+++|.++.-++.+.+.+ + .++.+...|+.+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~Dl~~~~ 65 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G--------------ERARFIATDITDDA 65 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C--------------CeeEEEEecCCCHH
Confidence 35678888887655 23334566787 8999999876544433221 1 23556677776543
Q ss_pred cCC--C-----CCCCCCEEEEccc
Q 038343 98 ESG--L-----SAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d~ 114 (191)
... + .-+..|+++.+--
T Consensus 66 ~~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 66 AIERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 110 0 1146888886543
No 409
>PRK08223 hypothetical protein; Validated
Probab=68.38 E-value=4.5 Score=32.50 Aligned_cols=43 Identities=30% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
++..+||=+||| .| .+...++..|..+++.+|.+.--+.++.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnR 69 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNR 69 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcccc
Confidence 467799999999 56 45668999999999999987544444433
No 410
>PRK05854 short chain dehydrogenase; Provisional
Probab=68.06 E-value=49 Score=26.51 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=47.6
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++++|=.|++.|+ ++..+++.|+ +|++++.+++-.+.+.+.+...... ..+.+..+|..+..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~------------~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPD------------AKLSLRALDLSSLA 78 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCC------------CceEEEEecCCCHH
Confidence 467788888877663 3334566776 8999998877666555554332111 24666777776543
Q ss_pred cCC-------CCCCCCCEEEEcc
Q 038343 98 ESG-------LSAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d 113 (191)
... ...++.|++|.+-
T Consensus 79 sv~~~~~~~~~~~~~iD~li~nA 101 (313)
T PRK05854 79 SVAALGEQLRAEGRPIHLLINNA 101 (313)
T ss_pred HHHHHHHHHHHhCCCccEEEECC
Confidence 210 0124688888643
No 411
>PRK07677 short chain dehydrogenase; Provisional
Probab=67.96 E-value=45 Score=25.45 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 23 NKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 23 ~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
++++|=.|++.|+ +...+++.|. +|++++.++..++.+...+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~ 46 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIE 46 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 3577877876663 2334556677 89999988776665554443
No 412
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.82 E-value=26 Score=28.46 Aligned_cols=43 Identities=26% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=.|+| .|...+.+++ .|+ +|+++|.+++-++.++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHH
Confidence 34468899999986 4555554444 566 7999999887776664
No 413
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=67.44 E-value=60 Score=29.10 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=28.8
Q ss_pred CcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 24 KSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 24 ~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.+|+=+|+| .| .++..+.+.|. .|+++|.|++.++.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK 441 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh
Confidence 478888888 55 44555666665 79999999988877753
No 414
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=67.40 E-value=9.7 Score=31.76 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=31.1
Q ss_pred CcEEEeCCC---ccHHHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 24 KSCFEVGSG---VGLVGICLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 24 ~~VLElG~G---tG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
++|+-+|+| .|.++-.+.+.|. .|+++|.++..++.++++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~-~V~~vd~~~~~v~aL~~q 43 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGF-EVTFVDVNQELIDALNKR 43 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCC-eEEEEECCHHHHHHHhcC
Confidence 368999998 3467878888875 899999988877776543
No 415
>PRK05866 short chain dehydrogenase; Provisional
Probab=67.29 E-value=46 Score=26.38 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=45.6
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.+++||=.|++.|+ +...+++.|. +|++++.+++.++.+.+.+...+ ..+.+...|..+..
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--------------~~~~~~~~Dl~d~~ 102 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--------------GDAMAVPCDLSDLD 102 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHH
Confidence 356788888876653 2224455676 89999998877766655543322 23455666665432
Q ss_pred cCC--C-----CCCCCCEEEEcc
Q 038343 98 ESG--L-----SAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d 113 (191)
.-. . .-+..|+|+.+-
T Consensus 103 ~v~~~~~~~~~~~g~id~li~~A 125 (293)
T PRK05866 103 AVDALVADVEKRIGGVDILINNA 125 (293)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 100 0 123688888654
No 416
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=67.16 E-value=6 Score=30.91 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=28.7
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLT 57 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~ 57 (191)
++..+|+=+||| .| .+...++..|..+++.+|.+.--
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve 68 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVS 68 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEC
Confidence 467799999998 56 45557888898899999976433
No 417
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=66.94 E-value=15 Score=32.01 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=31.9
Q ss_pred CCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
.++.+|+=+|+| .|+..+ .+..+|+ .|++.|.++..++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 466799999999 777766 4445687 79999999887666553
No 418
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=66.91 E-value=52 Score=24.81 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCCcEEEeCCCccHHHH----HHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 22 SNKSCFEVGSGVGLVGI----CLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~----~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+++||=.|++ |.+|. .+++.|. +|++++.++..+......+...+ .++.+...|+.+..
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~ 68 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG--------------GKARARQVDVRDRA 68 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECCCCCHH
Confidence 56788877765 44444 3445576 89999988766655554443332 23666777776542
Q ss_pred cCC--C-----CCCCCCEEEEccccc
Q 038343 98 ESG--L-----SAFVPEIILGADILY 116 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d~ly 116 (191)
.-. + .-+++|+|+.+-..+
T Consensus 69 ~~~~~~~~~~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 69 ALKAAVAAGVEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 100 0 113688888755443
No 419
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=66.62 E-value=20 Score=29.41 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=.|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~ 227 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK 227 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34467889888876 4555554444 56657999999887766664
No 420
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=66.45 E-value=14 Score=30.66 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=37.3
Q ss_pred EEEeCCC-ccH-HHHHHHhcCCC-eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCC
Q 038343 26 CFEVGSG-VGL-VGICLAHVKAS-KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLS 102 (191)
Q Consensus 26 VLElG~G-tG~-~~~~la~~g~~-~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~ 102 (191)
|+=||+| +|. +...+++.+.. +|++.|.+.+-++.+.+.+ .. .++....+|..+...-.-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~--------------~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LG--------------DRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TT--------------TTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cc--------------cceeEEEEecCCHHHHHHH
Confidence 5668885 442 22244555433 8999999987766554433 22 3577888887655321100
Q ss_pred CCCCCEEEEc
Q 038343 103 AFVPEIILGA 112 (191)
Q Consensus 103 ~~~fDvIi~~ 112 (191)
-...|+||.+
T Consensus 65 ~~~~dvVin~ 74 (386)
T PF03435_consen 65 LRGCDVVINC 74 (386)
T ss_dssp HTTSSEEEE-
T ss_pred HhcCCEEEEC
Confidence 1256999964
No 421
>PRK08324 short chain dehydrogenase; Validated
Probab=66.28 E-value=85 Score=28.41 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=28.7
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
+.+++||=.|++.|+ +...+++.|+ +|+++|.++..++.+...
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~ 465 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAE 465 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHH
Confidence 467889988865442 2334555677 899999988766555443
No 422
>PRK06125 short chain dehydrogenase; Provisional
Probab=66.23 E-value=56 Score=25.03 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+.++++|=.|++.|+ +...+++.|+ +|++++.+++.++.+...+..... .++.+...|+.+..
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-------------~~~~~~~~D~~~~~ 70 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHG-------------VDVAVHALDLSSPE 70 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcC-------------CceEEEEecCCCHH
Confidence 357788888976653 2234566777 899999988776665555443211 23455666665432
Q ss_pred cCC--C-CCCCCCEEEEcc
Q 038343 98 ESG--L-SAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~--~-~~~~fDvIi~~d 113 (191)
... . .-++.|+++.+-
T Consensus 71 ~~~~~~~~~g~id~lv~~a 89 (259)
T PRK06125 71 AREQLAAEAGDIDILVNNA 89 (259)
T ss_pred HHHHHHHHhCCCCEEEECC
Confidence 110 0 114678887654
No 423
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=66.17 E-value=40 Score=28.12 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=31.9
Q ss_pred CCCCcEEEeCCCccHHHH-HHHhcC--CC--eEEEEcCChHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGI-CLAHVK--AS--KVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~-~la~~g--~~--~v~~tD~~~~~l~~~~~n~ 65 (191)
.++.+|||+.+-.|.=++ .+.... .. .|++-|.++.=+..+.+.+
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~ 203 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL 203 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH
Confidence 478899999999985443 222222 22 7999999988777777655
No 424
>PRK06194 hypothetical protein; Provisional
Probab=65.89 E-value=48 Score=25.84 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=44.0
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+++++||=.|++.|+ +...+++.|+ +|+++|.++..++.....+...+ .++.+...|..+..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~d~~ 68 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--------------AEVLGVRTDVSDAA 68 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--------------CeEEEEECCCCCHH
Confidence 356788877765442 2223455676 89999988766655544433222 23555666665432
Q ss_pred cCC--C-----CCCCCCEEEEcccc
Q 038343 98 ESG--L-----SAFVPEIILGADIL 115 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~d~l 115 (191)
.-. . ..++.|+|+.+--+
T Consensus 69 ~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 69 QVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 100 0 11357888864433
No 425
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=65.72 E-value=52 Score=25.55 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
.+++++|=.|++.|+ +...+++.|+ +|++++.+++.++.+.+.+.
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIK 55 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 467788888876653 3334556677 89999998776665555443
No 426
>PRK07814 short chain dehydrogenase; Provisional
Probab=65.61 E-value=56 Score=25.17 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=44.8
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
.+++++|=.|++.|+ +...+++.|. +|++++.+++.++.+.+.+...+ .++.+...|..+..
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~ 72 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG--------------RRAHVVAADLAHPE 72 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHH
Confidence 467788888865542 2223455677 89999998776665555443222 23555666665442
Q ss_pred cCC--C-----CCCCCCEEEEc
Q 038343 98 ESG--L-----SAFVPEIILGA 112 (191)
Q Consensus 98 ~~~--~-----~~~~fDvIi~~ 112 (191)
.-. + .-+++|+|+-+
T Consensus 73 ~~~~~~~~~~~~~~~id~vi~~ 94 (263)
T PRK07814 73 ATAGLAGQAVEAFGRLDIVVNN 94 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEEC
Confidence 110 0 11368888864
No 427
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=65.43 E-value=29 Score=28.25 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=68.0
Q ss_pred CcEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 24 KSCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 24 ~~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++|-=+|+|+ | -++..++..|. .|+..|.++++++.++..+..+-............. .-..+..-.......
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~----~~~~l~~i~~~~~~~ 78 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEE----ADAALARITPTTDLA 78 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhh----HHHHHhhccccCchh
Confidence 3677788883 2 33334455445 899999999999888776655411100000000000 000000000000000
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccCCC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCNTN 158 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (191)
.-...|+|+=+ ++.+.+.-..+++.+..+++|+ +++.+..++.+....++.-
T Consensus 79 ~l~~~DlVIEA-v~E~levK~~vf~~l~~~~~~~----aIlASNTSsl~it~ia~~~ 130 (307)
T COG1250 79 ALKDADLVIEA-VVEDLELKKQVFAELEALAKPD----AILASNTSSLSITELAEAL 130 (307)
T ss_pred HhccCCEEEEe-ccccHHHHHHHHHHHHhhcCCC----cEEeeccCCCCHHHHHHHh
Confidence 11357888864 5566777788899999999988 4556666666665555554
No 428
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.39 E-value=17 Score=31.48 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=27.7
Q ss_pred CCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTL 58 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l 58 (191)
.++++|+=+|.| +|.... ++...|+ +|+++|..+..+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~ 48 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDAL 48 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHH
Confidence 467899999999 776555 5666776 899999765543
No 429
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=65.15 E-value=59 Score=24.87 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=45.5
Q ss_pred CCCCcEEEeCCCccHHHHH----HHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 21 FSNKSCFEVGSGVGLVGIC----LAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~~----la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
++++++|=.|+.. .+|.. +++.|+ +|+.++.++.-++.+...+...+ .++.+...|..+.
T Consensus 10 ~~~k~ilItGa~g-~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--------------~~~~~~~~Dl~d~ 73 (259)
T PRK08213 10 LSGKTALVTGGSR-GLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG--------------IDALWIAADVADE 73 (259)
T ss_pred cCCCEEEEECCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEEccCCCH
Confidence 4677899888544 34443 444576 89999988776665555444332 2355667776654
Q ss_pred CcCC-------CCCCCCCEEEEcc
Q 038343 97 SESG-------LSAFVPEIILGAD 113 (191)
Q Consensus 97 ~~~~-------~~~~~fDvIi~~d 113 (191)
..-. ...++.|.|+.+-
T Consensus 74 ~~i~~~~~~~~~~~~~id~vi~~a 97 (259)
T PRK08213 74 ADIERLAEETLERFGHVDILVNNA 97 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 2110 0114688888654
No 430
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=65.04 E-value=34 Score=25.93 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~ 55 (191)
+.+++||=+|.| .|.--+ .+...|+ +|+.++.+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence 467899999999 443323 5666777 888887643
No 431
>PLN02780 ketoreductase/ oxidoreductase
Probab=64.81 E-value=51 Score=26.65 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=33.3
Q ss_pred CCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 22 ~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
.|+.+|=.|++.|+ ++..+++.|+ +|++++.+++-++.+.+.++.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHH
Confidence 46788888887663 4445666787 899999999888777666654
No 432
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=64.80 E-value=44 Score=27.01 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHH-hcCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLA-HVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la-~~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=.|+| .|...+.++ ..|+.+|++++.+++-.+.++
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~ 214 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE 214 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 34467788888765 344444333 356657999998877666553
No 433
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=64.74 E-value=3.1 Score=32.40 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCCC-CcEEEeCCCccHHHHHHHhc--------CC--CeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEE
Q 038343 20 IFSN-KSCFEVGSGVGLVGICLAHV--------KA--SKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQC 88 (191)
Q Consensus 20 ~~~~-~~VLElG~GtG~~~~~la~~--------g~--~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~ 88 (191)
.++| ++++||.+..|..+.++++. +. +.++++|+.+-+ .+ ..+..
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI-------------~GV~q 93 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI-------------EGVIQ 93 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc-------------CceEE
Confidence 3444 48999999999999988763 11 149999984311 11 12344
Q ss_pred EeecCCCCCc-----CCCCCCCCCEEEEc---cc--ccCCC------ChHHHHHHHHHHhccCCCC
Q 038343 89 VHLPWESASE-----SGLSAFVPEIILGA---DI--LYDRS------CFPDLVRILAILLNRRKSV 138 (191)
Q Consensus 89 ~~ldw~~~~~-----~~~~~~~fDvIi~~---d~--ly~~~------~~~~ll~~l~~ll~~~g~~ 138 (191)
.+.|..+... .++...+.|+|++- |+ +|+.+ .+-..+.....+|++||..
T Consensus 94 lq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~F 159 (294)
T KOG1099|consen 94 LQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSF 159 (294)
T ss_pred eecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCee
Confidence 4555544321 12344578999972 22 22221 2334455566788999743
No 434
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=64.14 E-value=41 Score=26.90 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCCCcEEEeCCCccHHHH--HHHhcCCCeEEEEcCChHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVGI--CLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~--~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
.++++||=||+|-..-++ .++..|+++++..+.+.+-.+.+.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 467899999999543333 456788889999998765444443
No 435
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=64.05 E-value=33 Score=21.79 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=22.0
Q ss_pred HHHHhhCCCCCCCCcEEEeCCCcc--HHHHHHHhcCCC-eEEEEcC
Q 038343 11 SEFILSFPEIFSNKSCFEVGSGVG--LVGICLAHVKAS-KVTLTDG 53 (191)
Q Consensus 11 ~~~l~~~~~~~~~~~VLElG~GtG--~~~~~la~~g~~-~v~~tD~ 53 (191)
.+|+.........++||=+||.+| +.+...+..|+. ..+++-+
T Consensus 27 I~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 27 IEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp HHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred HHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 345555444433479999999988 454444443331 6666655
No 436
>PRK06949 short chain dehydrogenase; Provisional
Probab=63.90 E-value=63 Score=24.59 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=45.2
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..+++||=.|++.|+ +...+++.|+ +|++++.+++.++.+...+.... .++.+...|..+..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~ 71 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEG--------------GAAHVVSLDVTDYQ 71 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEecCCCHH
Confidence 456788888855442 2223455676 89999998877766655443222 23555666665432
Q ss_pred cCC-------CCCCCCCEEEEccc
Q 038343 98 ESG-------LSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ 114 (191)
... ...++.|+|+.+--
T Consensus 72 ~~~~~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 72 SIKAAVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 100 01136788887543
No 437
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.82 E-value=24 Score=28.08 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=29.5
Q ss_pred cEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 25 SCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 25 ~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+|.=+|+|+ | .++..++..|. +|++.|.+++.++.++..++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 577778883 2 34445566666 89999999998888876653
No 438
>PRK08303 short chain dehydrogenase; Provisional
Probab=63.72 E-value=54 Score=26.27 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGD 54 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~ 54 (191)
+.++.+|=.|++.|+ ++..+++.|+ +|++++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 567899999987763 3335566777 89998876
No 439
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=63.61 E-value=38 Score=27.80 Aligned_cols=44 Identities=34% Similarity=0.292 Sum_probs=30.0
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=.|+| .|...+.+++ .|+++|+++|.+++-++.++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 34467788888876 4555554444 57657999999887766664
No 440
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=63.60 E-value=27 Score=28.52 Aligned_cols=44 Identities=32% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=.|+| .|...+.+++ .|+.+|+++|.++.-++.++
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~ 218 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR 218 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34467889988875 4555554444 56656999999877666664
No 441
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=63.51 E-value=41 Score=25.50 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=28.4
Q ss_pred CCCCcEEEeCCCc-cHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 21 FSNKSCFEVGSGV-GLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 21 ~~~~~VLElG~Gt-G~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
.++.+||-.|+|+ |...+.+++ .| .+|++++.++...+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHH
Confidence 4678999999985 544443333 56 48999999876665553
No 442
>PRK08589 short chain dehydrogenase; Validated
Probab=63.16 E-value=69 Score=24.86 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=44.6
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
++++++|=.|++.|+ +...+++.|+ +|++++.+ ..++.+.+.+...+ .++.+...|..+..
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~ 67 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNG--------------GKAKAYHVDISDEQ 67 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcC--------------CeEEEEEeecCCHH
Confidence 457788888887663 3334566677 89999987 44444444443322 23555666765442
Q ss_pred cCC-----C--CCCCCCEEEEcc
Q 038343 98 ESG-----L--SAFVPEIILGAD 113 (191)
Q Consensus 98 ~~~-----~--~~~~fDvIi~~d 113 (191)
... . .-+..|++|.+-
T Consensus 68 ~~~~~~~~~~~~~g~id~li~~A 90 (272)
T PRK08589 68 QVKDFASEIKEQFGRVDVLFNNA 90 (272)
T ss_pred HHHHHHHHHHHHcCCcCEEEECC
Confidence 110 0 124678888654
No 443
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.01 E-value=66 Score=24.61 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=47.1
Q ss_pred HHHHHhhCCCCCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCee
Q 038343 10 LSEFILSFPEIFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVV 86 (191)
Q Consensus 10 L~~~l~~~~~~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i 86 (191)
|.+|+.... .+.+++||=.|++.|+ +...+++.|+ +|++++.+ ..++.+.+.+...+ .++
T Consensus 3 ~~~~~~~~~-~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~--------------~~~ 65 (258)
T PRK06935 3 LDKFSMDFF-SLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEG--------------RKV 65 (258)
T ss_pred hhhhccccc-cCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcC--------------Cce
Confidence 345543322 2467889999987763 2334566777 78888876 33344433333222 235
Q ss_pred EEEeecCCCCCcCC--C-----CCCCCCEEEEcc
Q 038343 87 QCVHLPWESASESG--L-----SAFVPEIILGAD 113 (191)
Q Consensus 87 ~~~~ldw~~~~~~~--~-----~~~~fDvIi~~d 113 (191)
.+...|..+..... + .-+..|+++.+-
T Consensus 66 ~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~a 99 (258)
T PRK06935 66 TFVQVDLTKPESAEKVVKEALEEFGKIDILVNNA 99 (258)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 55666665432110 0 113578888643
No 444
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.77 E-value=47 Score=26.72 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=29.4
Q ss_pred CCCCCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHH
Q 038343 18 PEIFSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLAN 60 (191)
Q Consensus 18 ~~~~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~ 60 (191)
.....+++|+=+|.| .|.... .+..+|+ +|++.|.++.....
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~ 190 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLAR 190 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 334578899999998 553333 4556787 99999998665433
No 445
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=62.48 E-value=19 Score=28.84 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=48.6
Q ss_pred CCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 22 SNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 22 ~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+||=+|+| .|+..+.+++ .|+..|+++|.++.-++.++.. .. + +-.+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~---------------i-----~~~~~--- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV---------------L-----DPEKD--- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc---------------c-----Chhhc---
Confidence 56688888877 6666664444 5776688888877655444321 10 0 00000
Q ss_pred CCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 100 GLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 100 ~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
....+|+|+-+ .-....+....++++++|...
T Consensus 197 --~~~g~Dvvid~------~G~~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 197 --PRRDYRAIYDA------SGDPSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred --cCCCCCEEEEC------CCCHHHHHHHHHhhhcCcEEE
Confidence 11357877732 223456677778899998655
No 446
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.28 E-value=66 Score=24.29 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=28.5
Q ss_pred CCCcEEEeCCCccHH---HHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLV---GICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 22 ~~~~VLElG~GtG~~---~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
+++++|=.|++.|+- ...+++.|. +|++++.++...+.+...+..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~ 49 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRA 49 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHh
Confidence 466788888654422 223445566 899999887766665554443
No 447
>PRK07791 short chain dehydrogenase; Provisional
Probab=62.05 E-value=61 Score=25.52 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCccHH---HHHHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSGVGLV---GICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~---~~~la~~g~~~v~~tD~~~ 55 (191)
++++++|=.|++.|+- ...+++.|+ +|+++|.+.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~ 40 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV 40 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 4678899999887743 334566777 788888754
No 448
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=62.03 E-value=40 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=26.8
Q ss_pred CCCCcEEEeCCC-ccHHH-HHHHhcCCCeEEEEcCChHHH
Q 038343 21 FSNKSCFEVGSG-VGLVG-ICLAHVKASKVTLTDGDHLTL 58 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~-~~la~~g~~~v~~tD~~~~~l 58 (191)
.++++|+=+|+| .|... ..+...|+..|+++|.+++-.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 578899999997 55333 344445667899999987544
No 449
>PRK07411 hypothetical protein; Validated
Probab=61.99 E-value=4.9 Score=33.73 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=31.3
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANM 61 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~ 61 (191)
+...+||=+||| .| .++..++..|..+++.+|.+.--+.++
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL 78 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNL 78 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEeccccc
Confidence 456799999999 66 556688999999999999865444333
No 450
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=61.88 E-value=70 Score=24.44 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=29.8
Q ss_pred CCCCcEEEeCCCccHHH---HHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLVG---ICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~---~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
..+++||=.|+++|+-. ..++..|+ ++++++.+...++.+...+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l 55 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEI 55 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHH
Confidence 46789999997766332 24555676 7888988777666554444
No 451
>PRK07576 short chain dehydrogenase; Provisional
Probab=61.87 E-value=71 Score=24.69 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=28.3
Q ss_pred CCCCcEEEeCCCccHH---HHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGLV---GICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~---~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
++++++|=.|++.|+- ...++..|+ +|++++.+++.++.....+
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 53 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQL 53 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 4677888888754432 224455676 7999998877665544433
No 452
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=61.51 E-value=15 Score=28.90 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=46.9
Q ss_pred EEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCC-C
Q 038343 27 FEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAF-V 105 (191)
Q Consensus 27 LElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~-~ 105 (191)
|..-.|+=.++..+.+-. .+.++.|..+...+.++.|+... .++.+...|=-+.....++.. +
T Consensus 62 l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~---------------~~v~v~~~DG~~~l~allPP~~r 125 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQ-DRLVLFELHPQDFEALKKNFRRD---------------RRVRVHHRDGYEGLKALLPPPER 125 (245)
T ss_dssp --EEE-HHHHHHHHS-TT-SEEEEE--SHHHHHHHTTS--TT---------------S-EEEE-S-HHHHHHHH-S-TTS
T ss_pred cCcCCCCHHHHHHhCCcc-ceEEEEecCchHHHHHHHHhccC---------------CccEEEeCchhhhhhhhCCCCCC
Confidence 455555555554444443 49999999999999888776543 246666554111100112222 2
Q ss_pred CCEEEEccccc-CCCChHHHHHHHHHHhccCC
Q 038343 106 PEIILGADILY-DRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 106 fDvIi~~d~ly-~~~~~~~ll~~l~~ll~~~g 136 (191)
--+|+. |.-| ...+++.+++++.+.+++-.
T Consensus 126 RglVLI-DPpYE~~~dy~~v~~~l~~a~kR~~ 156 (245)
T PF04378_consen 126 RGLVLI-DPPYEQKDDYQRVVDALAKALKRWP 156 (245)
T ss_dssp -EEEEE------STTHHHHHHHHHHHHHHH-T
T ss_pred CeEEEE-CCCCCCchHHHHHHHHHHHHHHhcC
Confidence 344554 7655 56789999999999999874
No 453
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.48 E-value=28 Score=27.80 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=30.7
Q ss_pred cEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 25 SCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 25 ~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
+|-=||+|+ | -++..++..|. .|++.|.+++.++.++..+..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHH
Confidence 677788882 2 44445666776 899999999999887666543
No 454
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=61.44 E-value=32 Score=26.96 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhc
Q 038343 22 SNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQ 69 (191)
Q Consensus 22 ~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~ 69 (191)
+-++|-=+|+| -| -++...+..|. .|++.|.++..|..+++-++.+-
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~~~I~~sl 58 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRATKAISSSL 58 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCC-ceEEecCCHHHHHHHHHHHHHHH
Confidence 33467778888 22 34445666776 89999999999998888776553
No 455
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=61.36 E-value=24 Score=29.50 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=31.7
Q ss_pred CCCCCcEEEeC-CC-ccHHHHHHHhc---CCCeEEEEcCChHHHHHHHHH
Q 038343 20 IFSNKSCFEVG-SG-VGLVGICLAHV---KASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 20 ~~~~~~VLElG-~G-tG~~~~~la~~---g~~~v~~tD~~~~~l~~~~~n 64 (191)
..++.+||=+| +| .|...+.+++. |+.+|+++|.+++-++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 34667888886 34 67777655654 445899999998887777653
No 456
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=61.21 E-value=39 Score=21.37 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=23.1
Q ss_pred CCCCCCCcEEEeCCCccH--HHHHHHhcCCCeEEEEcC
Q 038343 18 PEIFSNKSCFEVGSGVGL--VGICLAHVKASKVTLTDG 53 (191)
Q Consensus 18 ~~~~~~~~VLElG~GtG~--~~~~la~~g~~~v~~tD~ 53 (191)
...+++++++-+|+|.-. ....+...+..+++..|.
T Consensus 18 ~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 18 NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 344678899999997332 222444454557888876
No 457
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=61.09 E-value=65 Score=25.92 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=49.5
Q ss_pred CCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCC
Q 038343 23 NKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESG 100 (191)
Q Consensus 23 ~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~ 100 (191)
.++|+=+|+| .| .++..+++.|. .|++...++ .+. +..+++.... ......+.........+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~--~~~----~~~~g~~~~~-------~~~~~~~~~~~~~~~~~-- 68 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD--YEA----VRENGLQVDS-------VHGDFHLPPVQAYRSAE-- 68 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC--HHH----HHhCCeEEEe-------CCCCeeecCceEEcchh--
Confidence 3578889888 34 67777777776 888888764 222 2333322100 00001111111111100
Q ss_pred CCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCC
Q 038343 101 LSAFVPEIILGADILYDRSCFPDLVRILAILLNRRK 136 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g 136 (191)
....+|+|+.+=--| ....+++.+..++++++
T Consensus 69 -~~~~~D~vilavK~~---~~~~~~~~l~~~~~~~~ 100 (313)
T PRK06249 69 -DMPPCDWVLVGLKTT---ANALLAPLIPQVAAPDA 100 (313)
T ss_pred -hcCCCCEEEEEecCC---ChHhHHHHHhhhcCCCC
Confidence 124699998753333 24567778888887764
No 458
>PRK08643 acetoin reductase; Validated
Probab=60.84 E-value=65 Score=24.56 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 23 NKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 23 ~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|=.|+..|+ +...+++.|+ +|++++.++..++.+...+...+ .++.+...|..+...-
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDG--------------GKAIAVKADVSDRDQV 66 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECCCCCHHHH
Confidence 3567767766552 2224555676 89999998777666655554322 2355566666554310
Q ss_pred C-----C--CCCCCCEEEEcc
Q 038343 100 G-----L--SAFVPEIILGAD 113 (191)
Q Consensus 100 ~-----~--~~~~fDvIi~~d 113 (191)
. . ..++.|+++.+-
T Consensus 67 ~~~~~~~~~~~~~id~vi~~a 87 (256)
T PRK08643 67 FAAVRQVVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 0 0 114678887644
No 459
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=60.74 E-value=34 Score=27.63 Aligned_cols=88 Identities=10% Similarity=-0.122 Sum_probs=50.5
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCC
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESA 96 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~ 96 (191)
...++.+||=.|+| .|...+.+++ .|+ +|++++.+++-++.+++ .+.. . + ++-.+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~-------------~--v--i~~~~~ 219 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAA-------------S--A--GGAYDT 219 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCc-------------e--e--cccccc
Confidence 34468899989875 4444443444 566 79999988776655543 2321 0 0 010000
Q ss_pred CcCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCc
Q 038343 97 SESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVS 139 (191)
Q Consensus 97 ~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~ 139 (191)
....+|+++-.+.. ...+....++++++|...
T Consensus 220 -----~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v 251 (329)
T TIGR02822 220 -----PPEPLDAAILFAPA------GGLVPPALEALDRGGVLA 251 (329)
T ss_pred -----CcccceEEEECCCc------HHHHHHHHHhhCCCcEEE
Confidence 11257877654432 345677778899987654
No 460
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=60.73 E-value=76 Score=24.48 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=40.3
Q ss_pred eEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCCCCCCCCEEEEcccccCCCChHHHHH
Q 038343 47 KVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGLSAFVPEIILGADILYDRSCFPDLVR 126 (191)
Q Consensus 47 ~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~~~~~fDvIi~~d~ly~~~~~~~ll~ 126 (191)
++..+|-++...+.++..+...+.. +....=+.......... ||+|+. |+..-.-+--.+++
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~----------------v~~~~~~~~a~~~~~~~-~dlviL-D~~lP~~dG~~~~~ 63 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYE----------------VDVAADGEEALEAAREQ-PDLVLL-DLMLPDLDGLELCR 63 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE----------------EEEECCHHHHHHHHhcC-CCEEEE-ECCCCCCCHHHHHH
Confidence 5788888898989999888887743 12211111111113335 999997 55444444556677
Q ss_pred HHHHH
Q 038343 127 ILAIL 131 (191)
Q Consensus 127 ~l~~l 131 (191)
.+++.
T Consensus 64 ~iR~~ 68 (229)
T COG0745 64 RLRAK 68 (229)
T ss_pred HHHhh
Confidence 77755
No 461
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=60.21 E-value=16 Score=32.64 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=33.2
Q ss_pred cHHHHHHHHhhCCCCCCCCcEEEeCCCccHHHHHHHhc-CC-CeEEEEcCCh
Q 038343 6 SSLLLSEFILSFPEIFSNKSCFEVGSGVGLVGICLAHV-KA-SKVTLTDGDH 55 (191)
Q Consensus 6 ~a~~L~~~l~~~~~~~~~~~VLElG~GtG~~~~~la~~-g~-~~v~~tD~~~ 55 (191)
+|..|.+.=.++..+-++..||||||..|....++++. +. +-|+++|+-|
T Consensus 28 saFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 28 SAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 34555544333444446778999999999877776663 32 3789999743
No 462
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=60.10 E-value=40 Score=28.59 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.5
Q ss_pred CCCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLT 57 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~ 57 (191)
...+++|+=+|+| .|.... .+..+|+ +|+++|.++.-
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r 230 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIR 230 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhh
Confidence 4689999999999 664333 4555677 89999988753
No 463
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=60.04 E-value=6.3 Score=33.08 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=30.7
Q ss_pred CCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHH
Q 038343 21 FSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANM 61 (191)
Q Consensus 21 ~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~ 61 (191)
+.+.+||=+||| .| .+...++..|..+++++|.+.--..++
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL 82 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL 82 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc
Confidence 356799999999 55 455588889999999999765433333
No 464
>PRK11524 putative methyltransferase; Provisional
Probab=59.57 E-value=30 Score=27.54 Aligned_cols=40 Identities=5% Similarity=0.042 Sum_probs=26.6
Q ss_pred CCCCCCCEEEEcccccCC----------------CChHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDR----------------SCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~----------------~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
+++++||+|++...++.. .-+..++..+.++|+++|....
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 345689999985443211 0125688999999999986553
No 465
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=58.61 E-value=24 Score=25.60 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=27.9
Q ss_pred CCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~ 62 (191)
.+..+|+=+|.| .|.-+. .+..+|+ +|+..|..+..++..+
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~ 60 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLE 60 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhh
Confidence 456789999999 565555 5556787 8999999877665544
No 466
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=58.57 E-value=13 Score=30.78 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=30.8
Q ss_pred CCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHHHHHH
Q 038343 22 SNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLANMRS 63 (191)
Q Consensus 22 ~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~~~~~ 63 (191)
++..||=+||| -|.+++ +++..|..++=.+|++.--+.++.+
T Consensus 65 k~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhR 108 (427)
T KOG2017|consen 65 KNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHR 108 (427)
T ss_pred CCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHH
Confidence 45689999998 787666 8888888788888876544444433
No 467
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=58.53 E-value=52 Score=29.26 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=45.0
Q ss_pred CCCCCcEEEeCCCccHHHHH----HHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 20 IFSNKSCFEVGSGVGLVGIC----LAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~~~~~----la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
...+++||=.|+. |.+|.. +++.|. +|++++.+..-++.+...+....+.... .....++.+..+|..+
T Consensus 77 ~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~G-----a~~~~~v~iV~gDLtD 149 (576)
T PLN03209 77 TKDEDLAFVAGAT-GKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEG-----TQPVEKLEIVECDLEK 149 (576)
T ss_pred cCCCCEEEEECCC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhcccccc-----ccccCceEEEEecCCC
Confidence 3467778877764 434443 444566 8999998877665554444332211000 0001246667777765
Q ss_pred CCcCCCCCCCCCEEEEc
Q 038343 96 ASESGLSAFVPEIILGA 112 (191)
Q Consensus 96 ~~~~~~~~~~fDvIi~~ 112 (191)
.....-.-+..|+||.+
T Consensus 150 ~esI~~aLggiDiVVn~ 166 (576)
T PLN03209 150 PDQIGPALGNASVVICC 166 (576)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 32211011358988864
No 468
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.26 E-value=1.1 Score=32.68 Aligned_cols=40 Identities=8% Similarity=0.010 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEcccccCCCC--hHHHHHHHHHHhccCCCCcc
Q 038343 101 LSAFVPEIILGADILYDRSC--FPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 101 ~~~~~fDvIi~~d~ly~~~~--~~~ll~~l~~ll~~~g~~~~ 140 (191)
+.+++.|+|++..++.|... -...++...++|||+|+..+
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEE
Confidence 45678999999998876543 44568899999999997664
No 469
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=58.25 E-value=38 Score=24.82 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=27.1
Q ss_pred HHHHHhhC-CCCCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChH
Q 038343 10 LSEFILSF-PEIFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHL 56 (191)
Q Consensus 10 L~~~l~~~-~~~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~ 56 (191)
+.+-+.+. ...+.+++++=+|-| .| -++..+..+|+ +|+.+|.+|-
T Consensus 9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi 57 (162)
T PF00670_consen 9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence 33444332 335688999999877 55 45556677887 9999999883
No 470
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.14 E-value=78 Score=23.84 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=28.9
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
++++++|=.|++.|+ +...+++.|. +|+.+|.++.-++.+.+.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECG 50 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 356789988875443 2223455676 79999998766655554443
No 471
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=57.90 E-value=15 Score=29.74 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=25.6
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLT 57 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~ 57 (191)
+||=+||| .| .++..++..|..+++++|.+.-.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve 35 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVS 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 47889999 45 56668888999999999976433
No 472
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=57.76 E-value=52 Score=27.15 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=28.6
Q ss_pred CCCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCCh
Q 038343 19 EIFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~ 55 (191)
....+++||=+|+| .| +..-.+...|.++++.+..+.
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 44678899999998 55 555577788877899988764
No 473
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=57.71 E-value=34 Score=27.20 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=30.1
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+|.=+|+| -| .++..+++.|. +|++.|.+++.++.+++.+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 57778888 33 45556667776 89999999999887665443
No 474
>PRK06914 short chain dehydrogenase; Provisional
Probab=57.29 E-value=89 Score=24.20 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=43.2
Q ss_pred CCcEEEeCCCccHHH---HHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcC
Q 038343 23 NKSCFEVGSGVGLVG---ICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASES 99 (191)
Q Consensus 23 ~~~VLElG~GtG~~~---~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~ 99 (191)
++.+|=.|++.|+-. ..++..|+ +|++++.++..++.+...+...+.. .++.+...|..+....
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~------------~~~~~~~~D~~d~~~~ 69 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQ------------QNIKVQQLDVTDQNSI 69 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCC------------CceeEEecCCCCHHHH
Confidence 456788886555322 23455676 8999998877666555443332211 2456666776654321
Q ss_pred C-C-----CCCCCCEEEEcc
Q 038343 100 G-L-----SAFVPEIILGAD 113 (191)
Q Consensus 100 ~-~-----~~~~fDvIi~~d 113 (191)
. + .-++.|+|+.+-
T Consensus 70 ~~~~~~~~~~~~id~vv~~a 89 (280)
T PRK06914 70 HNFQLVLKEIGRIDLLVNNA 89 (280)
T ss_pred HHHHHHHHhcCCeeEEEECC
Confidence 0 0 113578877643
No 475
>PRK06720 hypothetical protein; Provisional
Probab=57.11 E-value=73 Score=23.17 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=30.0
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
++++.+|=.|++.|+ +...+++.|+ +|+.+|.++..++.+.+.+.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~ 61 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEIT 61 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHH
Confidence 467788888887663 3334556676 89999988776655544443
No 476
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=57.05 E-value=14 Score=22.50 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=16.7
Q ss_pred eCCC-ccHH-HHHHHhcCCCeEEEEcCCh
Q 038343 29 VGSG-VGLV-GICLAHVKASKVTLTDGDH 55 (191)
Q Consensus 29 lG~G-tG~~-~~~la~~g~~~v~~tD~~~ 55 (191)
+|+| +|+. +..+++.|. +|+..|.++
T Consensus 2 iGaG~sGl~aA~~L~~~g~-~v~v~E~~~ 29 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGY-RVTVFEKND 29 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred EeeCHHHHHHHHHHHHCCC-cEEEEecCc
Confidence 5777 5543 335666766 899999754
No 477
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.00 E-value=38 Score=27.71 Aligned_cols=120 Identities=16% Similarity=0.045 Sum_probs=61.9
Q ss_pred CcEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCcCCC
Q 038343 24 KSCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASESGL 101 (191)
Q Consensus 24 ~~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~~~~ 101 (191)
++|-=+|+|+ | -.+..++..|. .|++.|.+++.++.++..+...................++.+.. +. ..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l----~~-- 79 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TI----EA-- 79 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CH----HH--
Confidence 4677788882 2 34445566776 89999999988877665443221000000000000001111110 00 00
Q ss_pred CCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCccccccCCCCcccccccC
Q 038343 102 SAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSSSRKESSKGFTLDTKCN 156 (191)
Q Consensus 102 ~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~~~~~~~~~~~~~~~~ 156 (191)
.-...|+|+-+ +....+.-..+++.+.+.++|+. +..++..+.+...+.+
T Consensus 80 av~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a----IlaSnTS~l~~s~la~ 129 (321)
T PRK07066 80 CVADADFIQES-APEREALKLELHERISRAAKPDA----IIASSTSGLLPTDFYA 129 (321)
T ss_pred HhcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe----EEEECCCccCHHHHHH
Confidence 01357888874 44555556677888888888773 4444444444444443
No 478
>PRK09072 short chain dehydrogenase; Provisional
Probab=56.96 E-value=83 Score=24.14 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc
Q 038343 22 SNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE 98 (191)
Q Consensus 22 ~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~ 98 (191)
+++++|=.|++.|+ +...+++.|+ +|++++.+++.++.+...+. .+ .++.+...|..+...
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~--------------~~~~~~~~D~~d~~~ 67 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YP--------------GRHRWVVADLTSEAG 67 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cC--------------CceEEEEccCCCHHH
Confidence 46678888877653 3334556677 89999998777665544331 11 245566666654421
Q ss_pred CC------CCCCCCCEEEEcc
Q 038343 99 SG------LSAFVPEIILGAD 113 (191)
Q Consensus 99 ~~------~~~~~fDvIi~~d 113 (191)
-. ...+..|+|+.+-
T Consensus 68 ~~~~~~~~~~~~~id~lv~~a 88 (263)
T PRK09072 68 REAVLARAREMGGINVLINNA 88 (263)
T ss_pred HHHHHHHHHhcCCCCEEEECC
Confidence 00 0124578888653
No 479
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=56.95 E-value=41 Score=27.42 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=32.0
Q ss_pred CCCcEEEeCCCccHHHHHHHhcCCCeEEEEcCChHHHHHHHHHHHH
Q 038343 22 SNKSCFEVGSGVGLVGICLAHVKASKVTLTDGDHLTLANMRSNLEL 67 (191)
Q Consensus 22 ~~~~VLElG~GtG~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~ 67 (191)
.+.+|+-+|+|.-.+--++++..+ +|.++|+++.-+..-+-.+..
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHHH
Confidence 456899998886544446666655 999999999877665554443
No 480
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=56.31 E-value=1.1e+02 Score=27.45 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=25.7
Q ss_pred CCCCcEEEeCCCccHHHH--HHHhcCCCeEEEEcCCh
Q 038343 21 FSNKSCFEVGSGVGLVGI--CLAHVKASKVTLTDGDH 55 (191)
Q Consensus 21 ~~~~~VLElG~GtG~~~~--~la~~g~~~v~~tD~~~ 55 (191)
.+..+|+=||.|.....+ .++..|..++.++|.+.
T Consensus 127 qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~ 163 (637)
T TIGR03693 127 SRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDA 163 (637)
T ss_pred hhcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccc
Confidence 366799999999765444 56677888888886654
No 481
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=56.21 E-value=67 Score=22.44 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=28.9
Q ss_pred CCCCCcEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
..++++|+=+|+| .| .....+.+.|...|++.|.+++..+.+.+.
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 3567899999987 22 233344445545899999987766554443
No 482
>PLN02827 Alcohol dehydrogenase-like
Probab=55.83 E-value=42 Score=27.75 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=.|+| .|...+.+++ .|+..|+++|.+++-++.++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 34568899988875 4444443443 57657999998776655553
No 483
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.08 E-value=30 Score=26.29 Aligned_cols=43 Identities=23% Similarity=0.131 Sum_probs=29.6
Q ss_pred CCCCCcEEEeCCC-ccH-HHHHHHhcCCCeEEEEcCChHHHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGL-VGICLAHVKASKVTLTDGDHLTLANMRSN 64 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~-~~~~la~~g~~~v~~tD~~~~~l~~~~~n 64 (191)
...+++||=+|+- +|. .+.++++ +.+|+.+|++|.+-..+.-|
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp~~ 86 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLPNN 86 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCCCC
Confidence 4567899999887 774 3445544 34899999998765444433
No 484
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=55.05 E-value=76 Score=24.31 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=27.6
Q ss_pred cEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 25 SCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 25 ~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
+||=.|++.|+ +...+++.|+ +|++++.++..++.+.+.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELK 45 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHH
Confidence 56777777653 3334566777 89999998877766655543
No 485
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=54.86 E-value=1.3e+02 Score=25.20 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=30.9
Q ss_pred CCCcEEEeCCCccH--HHH--HHHhc--CCC--eEEEEcC----ChHHHHHHHHHHHHh
Q 038343 22 SNKSCFEVGSGVGL--VGI--CLAHV--KAS--KVTLTDG----DHLTLANMRSNLELN 68 (191)
Q Consensus 22 ~~~~VLElG~GtG~--~~~--~la~~--g~~--~v~~tD~----~~~~l~~~~~n~~~n 68 (191)
+..+|+|+|.|.|. +++ .++.. |+. ++|+++. +...++.+.+++...
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f 168 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEF 168 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH
Confidence 34489999999993 444 34443 222 7888888 667777777766443
No 486
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=54.70 E-value=58 Score=27.59 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=28.0
Q ss_pred CCCCCcEEEeCCC-ccH-HHHHHHhcCCCeEEEEcCChHHH
Q 038343 20 IFSNKSCFEVGSG-VGL-VGICLAHVKASKVTLTDGDHLTL 58 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~-~~~~la~~g~~~v~~tD~~~~~l 58 (191)
..++++|+=+|+| .|. ....+...|..+|++++.++.-.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra 217 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERA 217 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence 4578899999997 553 33355567766899999986543
No 487
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=54.70 E-value=1.1e+02 Score=24.54 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=34.7
Q ss_pred CCCCCCcEEEeCCCccHHHH--HHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 19 EIFSNKSCFEVGSGVGLVGI--CLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 19 ~~~~~~~VLElG~GtG~~~~--~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
...++++||=+|+|-..-++ .+++.|+++++.+..+.+-.+.+.+...
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~ 171 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFG 171 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence 34468899999999654443 6777888899999997766555555444
No 488
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=54.62 E-value=38 Score=27.19 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=28.1
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
+|.=+|+| -| .++..+++.|. +|++.|.+++.++.++..+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~~~~~ 45 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAAPAYI 45 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHHHHHH
Confidence 57778877 33 34445666676 8999999988887766544
No 489
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.52 E-value=39 Score=26.81 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=28.4
Q ss_pred cEEEeCCC-cc-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHH
Q 038343 25 SCFEVGSG-VG-LVGICLAHVKASKVTLTDGDHLTLANMRSNL 65 (191)
Q Consensus 25 ~VLElG~G-tG-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~ 65 (191)
+|.=+|+| -| .++..+++.|. +|++.|.+++.++.+++.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHH
Confidence 56667777 22 34445566676 8999999999988876554
No 490
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.33 E-value=92 Score=23.46 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=45.0
Q ss_pred CCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 21 FSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 21 ~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
+++++||=.|+..|+ +...+++.|. +|++++.++.-++.+...+.. + ..+.+...|..+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~--------------~~~~~~~~D~~~~~ 66 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-G--------------GRAIAVAADVSDEA 66 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-C--------------CeEEEEECCCCCHH
Confidence 356688888876543 2334555677 799999987666555444332 1 23556666665443
Q ss_pred cCC-------CCCCCCCEEEEccc
Q 038343 98 ESG-------LSAFVPEIILGADI 114 (191)
Q Consensus 98 ~~~-------~~~~~fDvIi~~d~ 114 (191)
... ...+.+|+||.+--
T Consensus 67 ~~~~~~~~~~~~~~~~d~vi~~ag 90 (251)
T PRK07231 67 DVEAAVAAALERFGSVDILVNNAG 90 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 210 01136898887543
No 491
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=54.30 E-value=61 Score=26.44 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCCCcEEEeCCC-ccHHHHHH-HhcCCCeEEEEcCChHHHHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGICL-AHVKASKVTLTDGDHLTLANM 61 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~~l-a~~g~~~v~~tD~~~~~l~~~ 61 (191)
.++.+||=.|+| .|...+.+ ...|...++.++.++...+.+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~ 228 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKA 228 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 456677766654 34333323 335664599898877665555
No 492
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.28 E-value=1.1e+02 Score=24.35 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=44.5
Q ss_pred CCCCCcEEEeCCCccH---HHHHHHhcCCCeEEEEcCC-hHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCC
Q 038343 20 IFSNKSCFEVGSGVGL---VGICLAHVKASKVTLTDGD-HLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWES 95 (191)
Q Consensus 20 ~~~~~~VLElG~GtG~---~~~~la~~g~~~v~~tD~~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~ 95 (191)
.++++++|=.|++.|+ ++..+++.|+ +|+++|.. ...++.+.+.+...+ .++.+...|..+
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g--------------~~~~~~~~Dv~d 73 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAG--------------AKAVAVAGDISQ 73 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcC--------------CeEEEEeCCCCC
Confidence 4578899988888763 3345666787 89998874 333444433333322 235556666554
Q ss_pred CCcCC------CCCCCCCEEEEcc
Q 038343 96 ASESG------LSAFVPEIILGAD 113 (191)
Q Consensus 96 ~~~~~------~~~~~fDvIi~~d 113 (191)
..... ..-++.|++|.+-
T Consensus 74 ~~~~~~~~~~~~~~g~iD~li~nA 97 (306)
T PRK07792 74 RATADELVATAVGLGGLDIVVNNA 97 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 32100 0124688887643
No 493
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=54.27 E-value=63 Score=27.40 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHHHH
Q 038343 21 FSNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLTLA 59 (191)
Q Consensus 21 ~~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~l~ 59 (191)
.++++|+=+|+| .|.... .+...|+..|++++.++.-..
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE 220 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 577899999998 553333 455667778999999875543
No 494
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=54.02 E-value=46 Score=27.24 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 19 EIFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 19 ~~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
...++.+||=.|+| .|...+.+++ .|+.+|+++|.+++-++.++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~ 229 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK 229 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34567888888865 4444443333 56657999998877666553
No 495
>PRK06181 short chain dehydrogenase; Provisional
Probab=53.98 E-value=97 Score=23.66 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=25.0
Q ss_pred CcEEEeCCCccHHHH----HHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 24 KSCFEVGSGVGLVGI----CLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 24 ~~VLElG~GtG~~~~----~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
++||=.|+..| +|. .++..|. +|++++.++...+.+.+.+.
T Consensus 2 ~~vlVtGasg~-iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~ 46 (263)
T PRK06181 2 KVVIITGASEG-IGRALAVRLARAGA-QLVLAARNETRLASLAQELA 46 (263)
T ss_pred CEEEEecCCcH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 35676665433 333 3445666 89999998766665554443
No 496
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.65 E-value=52 Score=26.11 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=29.4
Q ss_pred CcEEEeCCCc-c-HHHHHHHhcCCCeEEEEcCChHHHHHHHHHHH
Q 038343 24 KSCFEVGSGV-G-LVGICLAHVKASKVTLTDGDHLTLANMRSNLE 66 (191)
Q Consensus 24 ~~VLElG~Gt-G-~~~~~la~~g~~~v~~tD~~~~~l~~~~~n~~ 66 (191)
++|.=+|+|. | .++..++..|. .|++.|.+++.++.+...+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHH
Confidence 4677788883 2 44445666676 89999999998877655444
No 497
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=53.25 E-value=48 Score=27.15 Aligned_cols=43 Identities=23% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHH
Q 038343 20 IFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMR 62 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~ 62 (191)
..++.+||=+|+| .|...+.+++ .|+..|+++|.+++-++.++
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 3467788888875 4444443443 57657999999887666554
No 498
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=53.06 E-value=47 Score=28.54 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=27.6
Q ss_pred CCCcEEEeCCC-ccHHHH-HHHhcCCCeEEEEcCChHH
Q 038343 22 SNKSCFEVGSG-VGLVGI-CLAHVKASKVTLTDGDHLT 57 (191)
Q Consensus 22 ~~~~VLElG~G-tG~~~~-~la~~g~~~v~~tD~~~~~ 57 (191)
.+++|+=+|=| +|.... ++.+.|+ .|++.|..+..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc
Confidence 47789999988 885444 7788887 99999987765
No 499
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=53.01 E-value=21 Score=24.19 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=50.2
Q ss_pred CccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCCc-----CCCCCCC
Q 038343 32 GVGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESASE-----SGLSAFV 105 (191)
Q Consensus 32 GtG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~~-----~~~~~~~ 105 (191)
|.|+..+.+++ .| .+|+++|.++.-++.+++ .+.. ..++..+... .......
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~-----------------~~~~~~~~~~~~~i~~~~~~~~ 58 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD-----------------HVIDYSDDDFVEQIRELTGGRG 58 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES-----------------EEEETTTSSHHHHHHHHTTTSS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc-----------------cccccccccccccccccccccc
Confidence 46777775555 57 599999999887776653 3321 2233332210 0012246
Q ss_pred CCEEEEcccccCCCChHHHHHHHHHHhccCCCCccc
Q 038343 106 PEIILGADILYDRSCFPDLVRILAILLNRRKSVSSS 141 (191)
Q Consensus 106 fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~~ 141 (191)
+|+|+-+ ......++..-++++++|....+
T Consensus 59 ~d~vid~------~g~~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 59 VDVVIDC------VGSGDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp EEEEEES------SSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEEe------cCcHHHHHHHHHHhccCCEEEEE
Confidence 8888742 22467888889999999865543
No 500
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=52.99 E-value=49 Score=26.27 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=52.2
Q ss_pred CCCCCcEEEeCCC-ccHHHHHHHh-cCCCeEEEEcCChHHHHHHHHHHHHhcCCCCcccccccCCCCeeEEEeecCCCCC
Q 038343 20 IFSNKSCFEVGSG-VGLVGICLAH-VKASKVTLTDGDHLTLANMRSNLELNQLSTDTSLLESYEDPNVVQCVHLPWESAS 97 (191)
Q Consensus 20 ~~~~~~VLElG~G-tG~~~~~la~-~g~~~v~~tD~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~i~~~~ldw~~~~ 97 (191)
..++.+||-.|+| .|...+.+++ .|. +|++++.++...+.+++ .+... .+......+....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~------------~~~~~~~~~~~~~ 225 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADE------------VLNSLDDSPKDKK 225 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCE------------EEcCCCcCHHHHH
Confidence 4466788888876 4655554444 565 79999998877666543 22110 0000000000000
Q ss_pred cCCCCCCCCCEEEEcccccCCCChHHHHHHHHHHhccCCCCcc
Q 038343 98 ESGLSAFVPEIILGADILYDRSCFPDLVRILAILLNRRKSVSS 140 (191)
Q Consensus 98 ~~~~~~~~fDvIi~~d~ly~~~~~~~ll~~l~~ll~~~g~~~~ 140 (191)
.......+|+|+-+ .. ....++...+.|+++|....
T Consensus 226 -~~~~~~~~D~vid~--~g----~~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 226 -AAGLGGGFDVIFDF--VG----TQPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred -HHhcCCCceEEEEC--CC----CHHHHHHHHHHhhcCCEEEE
Confidence 01123468988742 21 24567778889999876543
Done!