BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038344
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 27/125 (21%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF----LETREGS----ELL 101
+A D DG LHLAA EGH++++E L++A D + + L REG E+L
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 102 -------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGF 154
NA D +G T LHLA + +E I + K+ A +VNA + G
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLE--IVEVLLKAGA----------DVNAQDKFGK 147
Query: 155 TAWDI 159
TA+DI
Sbjct: 148 TAFDI 152
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 23/100 (23%)
Query: 101 LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL 160
+NA D +G T LHLA + +E I + K+ A +VNA + +G+T +
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLE--IVEVLLKAGA----------DVNAKDKDGYTPLHLA 87
Query: 161 AQSKRDIKYWEIGELLRRARGN-SAKD------MHLPANE 193
A+ + EI E+L +A + +AKD +HL A E
Sbjct: 88 ARE----GHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 123
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 31/145 (21%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF----LETREGS----ELL 101
+A D DG LHLAA EGH++++E L++A D + + L REG E+L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 102 -------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGF 154
NA D +G T LHLA + +E I + K+ A +VNA + G
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLE--IVEVLLKAGA----------DVNAQDKFGK 135
Query: 155 TAWDILAQSKRDIKYWEIGELLRRA 179
T +D+ + + +I E+L++A
Sbjct: 136 TPFDLAIRE----GHEDIAEVLQKA 156
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 23/100 (23%)
Query: 101 LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL 160
+NA D +G T LHLA + +E I + K+ A +VNA + +G+T +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLE--IVEVLLKAGA----------DVNAKDKDGYTPLHLA 75
Query: 161 AQSKRDIKYWEIGELLRRARGN-SAKD------MHLPANE 193
A+ + EI E+L +A + +AKD +HL A E
Sbjct: 76 ARE----GHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 34/130 (26%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
+A D DG LHLAA EGH++++E L++A D +NA D +G
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------------------VNAKDKDGY 69
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKY 169
T LHLA + +E I + K+ A +VNA + +G+T + A+ +
Sbjct: 70 TPLHLAAREGHLE--IVEVLLKAGA----------DVNAKDKDGYTPLHLAARE----GH 113
Query: 170 WEIGELLRRA 179
EI E+L +A
Sbjct: 114 LEIVEVLLKA 123
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 23/100 (23%)
Query: 101 LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL 160
+NA D +G T LHLA + +E I + K+ A +VNA + +G+T +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLE--IVEVLLKAGA----------DVNAKDKDGYTPLHLA 75
Query: 161 AQSKRDIKYWEIGELLRRARGN-SAKD------MHLPANE 193
A+ + EI E+L +A + +AKD +HL A E
Sbjct: 76 ARE----GHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 45/172 (26%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
AA G +D V ++ ++ +D + LH+A+ G+ +A+D
Sbjct: 13 AAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
G LHLAA +GH++++E L++ D +NA D G T LHLA
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGAD------------------VNAYDRAGWTPLHLAA 113
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI-LAQSKRDI 167
Q+E I + K A +VNA +A G TA+DI + Q + D+
Sbjct: 114 LSGQLE--IVEVLLKHGA----------DVNAQDALGLTAFDISINQGQEDL 153
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 32/127 (25%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
AA GH + V +L ++ K D + LH+A++ G +A D +
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 67
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
GR LHLAA GH++V++ L+ A D +NA D NG T LHLA
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLHLAA 109
Query: 117 ADKQIEI 123
+ +E+
Sbjct: 110 RNGHLEV 116
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 43/138 (31%)
Query: 39 SALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
+ LH+A++ G +A D +GR LHLAA GH++V++ L+ A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 86 APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIE 145
+NA D NG T LHLA + +E+ +K + A +
Sbjct: 61 ---------------VNAKDKNGRTPLHLAARNGHLEV-----------VKLLLEAGA-D 93
Query: 146 VNAVNANGFTAWDILAQS 163
VNA + NG T + A++
Sbjct: 94 VNAKDKNGRTPLHLAARN 111
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 41/143 (28%)
Query: 56 DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
+GR LHLAA GH++V++ L+ A D +NA D NG T LHLA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLHLA 42
Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGEL 175
+ +E+ +K + A +VNA + NG T + A++ + E+ +L
Sbjct: 43 ARNGHLEV-----------VKLLLEAGA-DVNAKDKNGRTPLHLAARN----GHLEVVKL 86
Query: 176 LRRARGN-SAKD------MHLPA 191
L A + +AKD +HL A
Sbjct: 87 LLEAGADVNAKDKNGRTPLHLAA 109
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
AA GH + V +L ++ K D + LH+A++ G +A D +
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 100
Query: 57 GRNALHLAAMEGHIDVLEELVRA 79
GR LHLAA GH++V++ L+ A
Sbjct: 101 GRTPLHLAARNGHLEVVKLLLEA 123
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 48/187 (25%)
Query: 8 VAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATD 54
+ AA G++D V +++ ++ SDS + LH A+++G +A D
Sbjct: 9 IEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 55 VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHL 114
DGR LH AA EGH ++++ L+ D +NA D +G T LH
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGAD------------------VNAKDSDGRTPLHY 109
Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
A + EI +K + A +VN +++G T D+ R+ EI +
Sbjct: 110 AAKEGHKEI-----------VKLLISKGA-DVNTSDSDGRTPLDLA----REHGNEEIVK 153
Query: 175 LLRRARG 181
LL + G
Sbjct: 154 LLEKQGG 160
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA------ASAPLK-----SFLETRE-- 96
+A DV G LHLAA GH++++E L++ D S PL LE E
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NA DDNG+T LHLA +EI + Y + +VNA + G
Sbjct: 100 LKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA------------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 48/187 (25%)
Query: 8 VAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATD 54
+ AA G++D V ++L ++ SDS + LH+A++ G +A D
Sbjct: 9 IEAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 55 VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHL 114
DG+ LHLAA GH +V++ L+ D NA D +G T LHL
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADP------------------NAKDSDGKTPLHL 109
Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
A + E+ +K + A + N +++G T D+ R+ E+ +
Sbjct: 110 AAENGHKEV-----------VKLLLSQGA-DPNTSDSDGRTPLDLA----REHGNEEVVK 153
Query: 175 LLRRARG 181
LL + G
Sbjct: 154 LLEKQGG 160
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 31/98 (31%)
Query: 39 SALHIASQKG-------------KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS 85
+ LH+A++ G +A D +GR LHLAA GH++V++ L+ A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 86 APLKSFLETREGSELLNANDDNGMTILHLAVADKQIEI 123
+NA D NG T LHLA + +E+
Sbjct: 61 ---------------VNAKDKNGRTPLHLAARNGHLEV 83
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 30/108 (27%)
Query: 56 DGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLA 115
+GR LHLAA GH++V++ L+ A D +NA D NG T LHLA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------------VNAKDKNGRTPLHLA 42
Query: 116 VADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQS 163
+ +E+ +K + A +VNA + NG T + A++
Sbjct: 43 ARNGHLEV-----------VKLLLEAGA-DVNAKDKNGRTPLHLAARN 78
Score = 34.7 bits (78), Expect = 0.084, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
AA GH + V +L ++ K D + LH+A++ G +A D +
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 67
Query: 57 GRNALHLAAMEGHIDVLEELVRA 79
GR LHLAA GH++V++ L+ A
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEA 90
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 44/163 (26%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
AA G +D V ++ ++ +D+ ++ LH+A+ G A+DV
Sbjct: 21 AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
G LHLAA GH++++E L++ D +NA D +GMT LHLA
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGAD------------------VNAMDSDGMTPLHLAA 121
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
+E I + K A +VNA + G TA+DI
Sbjct: 122 KWGYLE--IVEVLLKHGA----------DVNAQDKFGKTAFDI 152
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS-----------APLKSFLETRE-- 96
+A D G+ LHLAA++GH++++E L++ D + A L LE E
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NA D G T LHLA +EI + Y + +VNA + G
Sbjct: 100 LKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA------------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA------ASAPL-----KSFLETRE-- 96
+ATD G LHLAA GH++++E L++ D + PL LE E
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NA D G T LHLA D +EI + Y + +VNA + G
Sbjct: 100 LKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA------------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
AA GH + V E+L + D+ ++ LH+A+ G +A D +
Sbjct: 54 AAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE 112
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPD 82
G LHLAA +GH++++E L++ D
Sbjct: 113 GFTPLHLAAYDGHLEIVEVLLKYGAD 138
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 44/163 (26%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVD 56
AA G +D V ++ ++ D+ + LH+A++ G +A D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
G LHLAA GH++++E L++ D +NA+D G T LHLA
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGAD------------------VNADDTIGSTPLHLAA 121
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
+EI + Y + +VNA + G TA+DI
Sbjct: 122 DTGHLEIVEVLLKYGA------------DVNAQDKFGKTAFDI 152
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF-----------LETRE-- 96
+ATD DG LHLAA GH++++E L++ D ++ L LE E
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G+++ NA D++G T LHLA +E I + K A +VNA + G
Sbjct: 100 LKHGADV-NAYDNDGHTPLHLAAKYGHLE--IVEVLLKHGA----------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
AA GH + V E+L + SD + LH+A+ G +A D D
Sbjct: 54 AASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDND 112
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPD 82
G LHLAA GH++++E L++ D
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGAD 138
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 29/125 (23%)
Query: 51 SATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF-----------LETRE--- 96
+A D G LHLAA+ GH++++E L++ D +A + F LE E
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 97 --GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGF 154
G++ +NA D G T LHLA + +EI + Y + +VNA + G
Sbjct: 101 KYGAD-VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA------------DVNAQDKFGK 147
Query: 155 TAWDI 159
TA+DI
Sbjct: 148 TAFDI 152
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 44/163 (26%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
AA G +D V ++ ++ D + S+ LH+A+ G +A D D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
G LHLAA GH++++E L++ D +NA D G+T LHLA
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGAD------------------VNAQDAYGLTPLHLAA 121
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
+E I + K A +VNA + G TA+DI
Sbjct: 122 DRGHLE--IVEVLLKHGA----------DVNAQDKFGKTAFDI 152
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPD------AASAPLK-----SFLETRE-- 96
+A D G LHLAA GH++++E L++ D A PL+ LE E
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NAND G T LHLA +E I + K+ A +VNA + G
Sbjct: 100 LKNGAD-VNANDMEGHTPLHLAAMFGHLE--IVEVLLKNGA----------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 30/110 (27%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
+A D DG LHLAA GH++++E L++ D +NA D+ G+
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD------------------VNAEDNFGI 81
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
T LHLA +E I + K A +VNA + G TA+DI
Sbjct: 82 TPLHLAAIRGHLE--IVEVLLKHGA----------DVNAQDKFGKTAFDI 119
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 48/187 (25%)
Query: 8 VAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATD 54
+ AA G++D V +++ ++ SDS + LH A++ G +A D
Sbjct: 9 IEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 55 VDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHL 114
DGR LH AA GH +V++ L+ D +NA D +G T LH
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGAD------------------VNAKDSDGRTPLHH 109
Query: 115 AVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGE 174
A + E+ +K + A +VN +++G T D+ R+ E+ +
Sbjct: 110 AAENGHKEV-----------VKLLISKGA-DVNTSDSDGRTPLDLA----REHGNEEVVK 153
Query: 175 LLRRARG 181
LL + G
Sbjct: 154 LLEKQGG 160
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS------APL-----KSFLETRE-- 96
+A+D G LHLAA GH++++E L++ D + PL + LE E
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NAND NG T LHLA +E I + K A +VNA + G
Sbjct: 100 LKNGAD-VNANDHNGFTPLHLAANIGHLE--IVEVLLKHGA----------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
AA GH + V E+L + DS + LH+A+ +G +A D +
Sbjct: 54 AAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHN 112
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPD 82
G LHLAA GH++++E L++ D
Sbjct: 113 GFTPLHLAANIGHLEIVEVLLKHGAD 138
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEEL------VRAKPDAASAPL-----KSFLETRE-- 96
+A D G LHLAA GH++++E L V AK PL + LE E
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NA+D +G T LHLA +E I + K+ A +VNA + G
Sbjct: 100 LKNGAD-VNASDSHGFTPLHLAAKRGHLE--IVEVLLKNGA----------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
AA GH + V E+L + DS + LH+A+++G +A+D
Sbjct: 54 AAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH 112
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPD 82
G LHLAA GH++++E L++ D
Sbjct: 113 GFTPLHLAAKRGHLEIVEVLLKNGAD 138
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 48/181 (26%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGK-------------CSATDVD 56
AA G +D V ++ + A D + LH+A+ G +A D +
Sbjct: 9 AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAV 116
G LHLAA GH++++E L++ D +NA D G+T L+LA
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGAD------------------VNAKDATGITPLYLAA 109
Query: 117 ADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQSKRDIKYWEIGELL 176
+E I + K A +VNA + G TA+DI DI ++ E+L
Sbjct: 110 YWGHLE--IVEVLLKHGA----------DVNAQDKFGKTAFDI----SIDIGNEDLAEIL 153
Query: 177 R 177
+
Sbjct: 154 Q 154
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 51 SATDVDGRNALHLAAMEGHIDVLEELVR--AKPDAASA----PLKSFLET--REGSELL- 101
+A+D DGR LH AA GH ++++ L+ A P+A + PL E +E +LL
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 102 ------NANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFT 155
NA D +G T LH A + EI +K + A + N +++G T
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGHKEI-----------VKLLLSKGA-DPNTSDSDGRT 138
Query: 156 AWDILAQSKRDIKYWEIGELLRRARG 181
D+ R+ EI +LL + G
Sbjct: 139 PLDLA----REHGNEEIVKLLEKQGG 160
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 10 AALLGHEDFVNEILCQKPEL-ARKSDSRKSSALHIASQKG-------------KCSATDV 55
AA GH++ V +L + + A+ SD R + LH A++ G +A D
Sbjct: 44 AAENGHKEIVKLLLSKGADPNAKDSDGR--TPLHYAAENGHKEIVKLLLSKGADPNAKDS 101
Query: 56 DGRNALHLAAMEGHIDVLEELV 77
DGR LH AA GH ++++ L+
Sbjct: 102 DGRTPLHYAAENGHKEIVKLLL 123
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAAS-----------APLKSFLETRE-- 96
+A D G LHL GH++++E L++ D + A + LE E
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NA D G T LHLA D +EI + Y + +VNA + G
Sbjct: 100 LKYGAD-VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA------------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 14 GHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVDGRNA 60
GH + + E+L + SD + LH+A+ +G +A D G
Sbjct: 58 GHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTP 116
Query: 61 LHLAAMEGHIDVLEELVRAKPD 82
LHLAA +GH++++E L++ D
Sbjct: 117 LHLAAEDGHLEIVEVLLKYGAD 138
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA------ASAPLK-----SFLETRE-- 96
+ATD G LHLAA GH++++E L++ D S PL LE E
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NA D G T LHLA +E I + K A +VNA + G
Sbjct: 100 LKHGAD-VNAVDTWGDTPLHLAAIMGHLE--IVEVLLKHGA----------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 30/110 (27%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
+A D G LHLAAM GH++++E L++ D +NA + G
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD------------------VNATGNTGR 81
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
T LHLA W H+ +K +VNA + G TA+DI
Sbjct: 82 TPLHLAA-------WADHLEIVEVLLKH-----GADVNAQDKFGKTAFDI 119
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 29/126 (23%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDA------ASAPLK-----SFLETRE-- 96
+ATD G LHLAA GH++++E L++ D S PL LE E
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 97 ---GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANG 153
G++ +NA D G T LHLA +E I + K A +VNA + G
Sbjct: 100 LKHGAD-VNAVDTWGDTPLHLAAIMGHLE--IVEVLLKHGA----------DVNAQDKFG 146
Query: 154 FTAWDI 159
TA+DI
Sbjct: 147 KTAFDI 152
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 14 GHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDVDGRNALHLAAMEGHIDVL 73
G E V+ ++ + K + K S I + K + TD D R ALH A GH +++
Sbjct: 1 GSEGCVSNLMVCNLAYSGKLEELKES---ILADKSLATRTDQDSRTALHWACSAGHTEIV 57
Query: 74 EELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQIEIWITHITYKSR 133
E L++ P+ N DD G + LH+A + + EI
Sbjct: 58 EFLLQL-----GVPV-------------NDKDDAGWSPLHIAASAGRDEI---------- 89
Query: 134 AIKFFTTSTAIEVNAVNANGFTAWDILAQSKR 165
+K A +VNAVN NG T A R
Sbjct: 90 -VKALLGKGA-QVNAVNQNGCTPLHYAASKNR 119
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 30/110 (27%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
+A D G LHLAA GH++++E L++ D +NA+D G
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD------------------VNASDSWGR 81
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
T LHLA +EI + Y + +VNA + G TA+DI
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGA------------DVNAQDKFGKTAFDI 119
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 14 GHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVDGRNA 60
G +D V ++ ++ D+ + LH+A+++G +A+D GR
Sbjct: 25 GQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTP 83
Query: 61 LHLAAMEGHIDVLEELVRAKPD 82
LHLAA GH++++E L+ D
Sbjct: 84 LHLAATVGHLEIVEVLLEYGAD 105
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 43 IASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLN 102
I + K + TD D R ALH A GH +++E L++ P+ N
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-----GVPV-------------N 67
Query: 103 ANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ 162
DD G + LH+A + + EI +K A +VNAVN NG T A
Sbjct: 68 DKDDAGWSPLHIAASAGRDEI-----------VKALLGKGA-QVNAVNQNGCTPLHYAAS 115
Query: 163 SKRDIKYWEIGELLRRARGN-SAKDMH 188
R EI +L N AKD +
Sbjct: 116 KNRH----EIAVMLLEGGANPDAKDHY 138
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPD 82
+A D DG LHLAA EGH++++E L++A D
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 101 LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
+NA D +G T LHLA + +E I + K+ A +VNA + G TA+DI
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLE--IVEVLLKAGA----------DVNAQDKFGKTAFDI 74
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 29/142 (20%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKGKCSATDV-------------D 56
AA GH + +L K ++ K+ ++ LH A++ G + +
Sbjct: 54 AARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNMVKLLLENNANPNLATTA 112
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSF----LETREG----SELL------- 101
G LH+AA EGH++ + L+ + A K F + + G +ELL
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 102 NANDDNGMTILHLAVADKQIEI 123
NA NG+T LH+AV ++I
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDI 194
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 90/236 (38%), Gaps = 60/236 (25%)
Query: 9 AAALLGHEDFVNEILCQK--PELARKSDSRKSSALHIASQKGKC-------------SAT 53
AA +GH + V +L P LA + + LHIA+++G +
Sbjct: 86 CAARIGHTNMVKLLLENNANPNLATTAGH---TPLHIAAREGHVETVLALLEKEASQACM 142
Query: 54 DVDGRNALHLAAMEGHIDVLEELVR--AKPDAAS----APLK-----------SFLETRE 96
G LH+AA G + V E L+ A P+AA PL L R
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202
Query: 97 GSELLNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTA 156
GS ++ NG T LH+A Q+E+ + + Y A NA + G T
Sbjct: 203 GSP--HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA------------NAESVQGVTP 248
Query: 157 WDILAQSKRDIKYWEIGELL--RRARGNSAKD-----MHLPANELAVTQTNSLTSH 205
+ AQ + E+ LL ++A GN +HL A E V + L H
Sbjct: 249 LHLAAQE----GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 35/147 (23%)
Query: 43 IASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLN 102
I + K + TD D R ALH A GH +++E L++ P+ N
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-----GVPV-------------N 67
Query: 103 ANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ 162
DD G + LH+A + + EI +K A VNAVN NG T A
Sbjct: 68 DKDDAGWSPLHIAASAGRDEI-----------VKALLVKGA-HVNAVNQNGCTPLHYAAS 115
Query: 163 SKRDIKYWEIGELLRRARGN-SAKDMH 188
R EI +L N AKD +
Sbjct: 116 KNR----HEIAVMLLEGGANPDAKDHY 138
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 30/110 (27%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
+A D G LHLAA GH++++E L++ D +NA+D G
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD------------------VNASDIWGR 81
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
T LHLA +EI + Y + +VNA + G TA+DI
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGA------------DVNAQDKFGKTAFDI 119
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 14 GHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVDGRNA 60
G +D V ++ ++ D+ + LH+A+++G +A+D+ GR
Sbjct: 25 GQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTP 83
Query: 61 LHLAAMEGHIDVLEELVRAKPD 82
LHLAA GH++++E L+ D
Sbjct: 84 LHLAATVGHLEIVEVLLEYGAD 105
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 57/147 (38%), Gaps = 35/147 (23%)
Query: 43 IASQKGKCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLN 102
I + K + TD D R ALH A GH +++E L++ P+ N
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-----GVPV-------------N 67
Query: 103 ANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDILAQ 162
DD G + LH+A + EI +K A VNAVN NG T A
Sbjct: 68 DKDDAGWSPLHIAASAGXDEI-----------VKALLVKGA-HVNAVNQNGCTPLHYAAS 115
Query: 163 SKRDIKYWEIGELLRRARGN-SAKDMH 188
R EI +L N AKD +
Sbjct: 116 KNR----HEIAVMLLEGGANPDAKDHY 138
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 30/110 (27%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
+A D G LHLAA GH++++E L++ D +NA D G
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD------------------VNARDIWGR 81
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
T LHLA +EI + Y + +VNA + G TA+DI
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGA------------DVNAQDKFGKTAFDI 119
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 14 GHEDFVNEILCQKPELARKSDSRKSSALHIASQKG-------------KCSATDVDGRNA 60
G +D V ++ ++ D+ + LH+A+++G +A D+ GR
Sbjct: 25 GQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTP 83
Query: 61 LHLAAMEGHIDVLEELVRAKPD 82
LHLAA GH++++E L+ D
Sbjct: 84 LHLAATVGHLEIVEVLLEYGAD 105
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 30/110 (27%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
+A D G LHLAA H++++E L++ D +NA+D++G
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD------------------VNAHDNDGS 81
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
T LHLA +E I + K A +VNA + G TA+DI
Sbjct: 82 TPLHLAALFGHLE--IVEVLLKHGA----------DVNAQDKFGKTAFDI 119
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 10 AALLGHEDFVNEILCQKPELARKSDSRKSSALHIAS-------------QKGKCSATDVD 56
AA G +D V ++ ++ +D + ++ LH+A+ +A D D
Sbjct: 21 AARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 57 GRNALHLAAMEGHIDVLEELVRAKPD 82
G LHLAA+ GH++++E L++ D
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGAD 105
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 26/113 (23%)
Query: 58 RNALHLAAMEGHIDVLEELVRAKP--DAASAPLKS-FLETREGSE------------LLN 102
R+ LH AA GH+D+ LV+A D S ++ +E E + L++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 103 ANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFT 155
D G T LHLA E+ +++ ++ ++VN + G+T
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEV-----------VQYLLSNGQMDVNCQDDGGWT 113
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 17/70 (24%)
Query: 54 DVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGMTILH 113
D +G LHLAA +GH +V++ L+ G +N DD G T +
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLL-----------------SNGQMDVNCQDDGGWTPMI 116
Query: 114 LAVADKQIEI 123
A K +++
Sbjct: 117 WATEYKHVDL 126
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
Query: 101 LNANDDNGMTILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDIL 160
+NA D+ G+T L+LA A +E I + K+ A +VNAV+A GFT +
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLE--IVEVLLKNGA----------DVNAVDAIGFTPLHLA 87
Query: 161 AQSKRDIKYWEIGELLRR 178
A I + EI E+L +
Sbjct: 88 AF----IGHLEIAEVLLK 101
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 33/122 (27%)
Query: 38 SSALHIASQKGKCS--------ATDVDGRNA-----LHLAAMEGHIDVLEELV--RAKPD 82
SS LH+A+ G+ + RNA LHLA +GH V++ L+ AKP+
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 83 ----AASAPLKSF----------LETREGSELLNANDDNGMTILHLAVADKQ---IEIWI 125
+ + PL L + G+ + NA+++ G T LH AV +K +E+ +
Sbjct: 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLL 205
Query: 126 TH 127
H
Sbjct: 206 LH 207
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 2 TILQLAVAAALLGHEDFVNEILCQKPELARKSDSRKSSALHIASQKG------------- 48
T L AVA+ L V E+L +K + + + LH+A+++
Sbjct: 213 TALHCAVAS-LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 49 KCSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSE 99
K +A D G+ ALH AA+ GH+ L+ D + L+ F + G+E
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 30/110 (27%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPDAASAPLKSFLETREGSELLNANDDNGM 109
+A D G LHLAAM H++++E L++ D +NA D G
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD------------------VNAIDAIGE 81
Query: 110 TILHLAVADKQIEIWITHITYKSRAIKFFTTSTAIEVNAVNANGFTAWDI 159
T LHL +E I + K A +VNA + G TA+DI
Sbjct: 82 TPLHLVAMYGHLE--IVEVLLKHGA----------DVNAQDKFGKTAFDI 119
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPD 82
+A D +G LHLAA GH++V++ L+ A D
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 50 CSATDVDGRNALHLAAMEGHIDVLEELVRAKPD 82
+A D +G LHLAA GH++V++ L+ A D
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 54 DVDGRNALHLAAMEGHIDVLEELVR 78
D +G LHLAA EGH+ V+E LV+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 54 DVDGRNALHLAAMEGHIDVLEELVR 78
D +G LHLAA EGH+ V+E LV+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 54 DVDGRNALHLAAMEGHIDVLEELVR 78
D +G LHLAA EGH+ V+E LV+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 54 DVDGRNALHLAAMEGHIDVLEELVR 78
D +G LHLAA EGH+ V+E LV+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 54 DVDGRNALHLAAMEGHIDVLEELVR 78
D +G LHLAA EGH+ V+E LV+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 37/132 (28%)
Query: 11 ALLGHEDF-VNEILCQKPELARKSDSRKSSALH--IASQKGKCSA--------------T 53
A + +E F V E+L KP L + D LH ++ Q + ++
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 54 DVDGRNALHLAAMEGHIDVLEELVR--AKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
D G H+A G+++V++ L KPD LN + G+T
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPD------------------LNKITNQGVTC 110
Query: 112 LHLAVADKQIEI 123
LHLAV K E+
Sbjct: 111 LHLAVGKKWFEV 122
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And
Pinch2 For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 32 KSDSRKSSALHIASQKGKCSATDV-------------DGRNALHLAAMEGHIDVLEELVR 78
+ D S LH A ++G+ + ++ LHLAA GH D++++L++
Sbjct: 34 QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 93
Query: 79 AKPD 82
K D
Sbjct: 94 YKAD 97
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 37/132 (28%)
Query: 11 ALLGHEDF-VNEILCQKPELARKSDSRKSSALH--IASQKGKCSA--------------T 53
A + +E F V E+L KP L + D LH ++ Q + ++
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 54 DVDGRNALHLAAMEGHIDVLEELVR--AKPDAASAPLKSFLETREGSELLNANDDNGMTI 111
D G H+A G+++V++ L KPD LN + G+T
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPD------------------LNKITNQGVTC 110
Query: 112 LHLAVADKQIEI 123
LHLAV K E+
Sbjct: 111 LHLAVGKKWFEV 122
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 32 KSDSRKSSALHIASQKGKCSATDV-------------DGRNALHLAAMEGHIDVLEELVR 78
+ D S LH A ++G+ + ++ LHLAA GH D++++L++
Sbjct: 29 QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 88
Query: 79 AKPD 82
K D
Sbjct: 89 YKAD 92
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 157 WDILAQSKRDIKYWEIGELLRRARGNSAKDMHLPANELAVTQTNSLTSHENNQKH 211
WD A+ +D+ GE+ R A G+ K +H P+ ++ + T E QK
Sbjct: 17 WDFTAEDLKDL-----GEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQ 66
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 36/123 (29%)
Query: 19 VNEILCQKPELARKSDSRKSSALH--IASQKGKCSA--------------TDVDGRNALH 62
V E+L KP L + D LH ++ Q + ++ D G H
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 63 LAAMEGHIDVLEELVR--AKPDAASAPLKSFLETREGSELLNANDDNGMTILHLAVADKQ 120
+A G+++V++ L KPD LN + G+T LHLAV K
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPD------------------LNKITNQGVTCLHLAVGKKW 119
Query: 121 IEI 123
E+
Sbjct: 120 FEV 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,704,743
Number of Sequences: 62578
Number of extensions: 350923
Number of successful extensions: 1005
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 156
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)