BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038347
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 108/284 (38%), Gaps = 49/284 (17%)
Query: 14 GVGSVA-LASSLTYPLDTIKVLKQVGSGSNKQLSSLQVLNRXXXXXXXXXXXXXXXXXRS 72
G G+ A +A +T+PLDT KV Q+ G ++ L + RS
Sbjct: 7 GAGTAACIADLITFPLDTAKVRLQI-QGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 73 FSMG-------------ARFGVYEILSAFYKDGREDNYVYVSEALMAGMVAGAAEALISS 119
G R G+Y+ + FY G E + + L+AG GA ++
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQ 123
Query: 120 PFELMKVRAQVSSVI----RVQTSTSVAEHVTVAPVIRRLLHGYTPDL--KALSHSAGLL 173
P +++KVR Q + R Q++ + + IR L G +P++ A+ + A L+
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183
Query: 174 SILTNKHPDLMNAL--QEYPW-MMSGSGRPPLVSSVRRPSDIVSF--------------- 215
+ K L L + P S G + + P D+V
Sbjct: 184 TYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGH 243
Query: 216 --------EGWGAFWRGLRSGVVRDSVFGGIFFSSWQFLHRAML 251
EG AF++G +R + + F +++ L RA++
Sbjct: 244 CALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
>pdb|3MBW|A Chain A, Crystal Structure Of The Human Ephrin A2 Lbd And Crd
Domains In Complex With Ephrin A1
Length = 330
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 114 EALISSPFELMKVRAQVSSVIRVQTSTSVAEHVTVAPVIRRLLHGYTPDLKALSHSAGLL 173
E +SS FE V+ V E +V P+ R+ G+ + + LL
Sbjct: 153 EITVSSDFEARHVKLNV-------------EERSVGPLTRK---GFYLAFQDIGACVALL 196
Query: 174 SI--LTNKHPDLMNALQEYPWMMSGSGRPPLVS 204
S+ K P+L+ L +P ++GS P L +
Sbjct: 197 SVRVYYKKCPELLQGLAHFPETIAGSDAPSLAT 229
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 114 EALISSPFELMKVRAQVSSVIRVQTSTSVAEHVTVAPVIRRLLHGYTPDLKALSHSAGLL 173
E +SS FE V+ V E +V P+ R+ G+ + + LL
Sbjct: 123 EITVSSDFEARHVKLNV-------------EERSVGPLTRK---GFYLAFQDIGACVALL 166
Query: 174 SILT--NKHPDLMNALQEYPWMMSGSGRPPLVS 204
S+ K P+L+ L +P ++GS P L +
Sbjct: 167 SVRVYYKKCPELLQGLAHFPETIAGSDAPSLAT 199
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 114 EALISSPFELMKVRAQVSSVIRVQTSTSVAEHVTVAPVIRRLLHGYTPDLKALSHSAGLL 173
E +SS FE V+ V E +V P+ R+ G+ + + LL
Sbjct: 151 EITVSSDFEARHVKLNV-------------EERSVGPLTRK---GFYLAFQDIGACVALL 194
Query: 174 SILT--NKHPDLMNALQEYPWMMSGSGRPPLVS 204
S+ K P+L+ L +P ++GS P L +
Sbjct: 195 SVRVYYKKCPELLQGLAHFPETIAGSDAPSLAT 227
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 114 EALISSPFELMKVRAQVSSVIRVQTSTSVAEHVTVAPVIRRLLHGYTPDLKALSHSAGLL 173
E +SS FE V+ V E +V P+ R+ G+ + + LL
Sbjct: 154 EITVSSDFEARHVKLNV-------------EERSVGPLTRK---GFYLAFQDIGACVALL 197
Query: 174 SILT--NKHPDLMNALQEYPWMMSGSGRPPLVS 204
S+ K P+L+ L +P ++GS P L +
Sbjct: 198 SVRVYYKKCPELLQGLAHFPETIAGSDAPSLAT 230
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 114 EALISSPFELMKVRAQVSSVIRVQTSTSVAEHVTVAPVIRRLLHGYTPDLKALSHSAGLL 173
E +SS FE V+ V E +V P+ R+ G+ + + LL
Sbjct: 151 EITVSSDFEARHVKLNV-------------EERSVGPLTRK---GFYLAFQDIGACVALL 194
Query: 174 SILT--NKHPDLMNALQEYPWMMSGSGRPPLVS 204
S+ K P+L+ L +P ++GS P L +
Sbjct: 195 SVRVYYKKCPELLQGLAHFPETIAGSDAPSLAT 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,629,640
Number of Sequences: 62578
Number of extensions: 270350
Number of successful extensions: 565
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 8
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)