Query 038350
Match_columns 472
No_of_seqs 177 out of 2098
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:06:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.6 9.2E-18 2E-22 157.7 -1.7 350 10-448 74-442 (483)
2 KOG2120 SCF ubiquitin ligase, 99.6 2.3E-16 5.1E-21 142.1 0.2 280 8-371 98-393 (419)
3 smart00579 FBD domain in FBox 99.2 1E-10 2.3E-15 86.5 7.0 69 403-472 4-72 (72)
4 PLN00113 leucine-rich repeat r 99.0 7.4E-10 1.6E-14 123.9 7.3 202 157-375 108-318 (968)
5 PLN00113 leucine-rich repeat r 98.9 3.2E-09 7E-14 118.8 6.9 249 158-444 85-344 (968)
6 PF08387 FBD: FBD; InterPro: 98.8 7.4E-09 1.6E-13 70.3 4.3 39 402-440 12-50 (51)
7 KOG4194 Membrane glycoprotein 98.7 1.6E-09 3.4E-14 106.7 -0.8 205 154-377 113-329 (873)
8 PLN03210 Resistant to P. syrin 98.7 2.6E-08 5.6E-13 112.5 6.8 106 156-267 602-713 (1153)
9 KOG4194 Membrane glycoprotein 98.6 1E-08 2.2E-13 101.2 0.2 70 153-223 159-231 (873)
10 PF12937 F-box-like: F-box-lik 98.6 2.4E-08 5.2E-13 66.9 1.6 32 8-39 1-32 (47)
11 cd00116 LRR_RI Leucine-rich re 98.4 4.7E-07 1E-11 87.8 6.2 245 168-444 24-290 (319)
12 PLN03210 Resistant to P. syrin 98.4 4.5E-07 9.7E-12 102.6 6.8 110 156-268 624-735 (1153)
13 cd00116 LRR_RI Leucine-rich re 98.2 4.9E-07 1.1E-11 87.7 2.5 272 130-442 23-317 (319)
14 KOG2120 SCF ubiquitin ligase, 98.2 2.9E-08 6.3E-13 90.4 -6.7 178 168-376 186-374 (419)
15 PF00646 F-box: F-box domain; 98.1 4.1E-07 8.8E-12 61.3 -1.1 35 8-44 3-37 (48)
16 KOG4341 F-box protein containi 98.1 4.9E-08 1.1E-12 92.9 -7.6 106 162-267 133-251 (483)
17 smart00256 FBOX A Receptor for 98.0 3.1E-06 6.8E-11 54.7 1.4 32 11-44 1-32 (41)
18 KOG3207 Beta-tubulin folding c 97.8 1E-06 2.2E-11 84.6 -3.6 201 168-375 122-336 (505)
19 KOG1909 Ran GTPase-activating 97.8 1E-05 2.3E-10 75.7 2.9 178 184-376 88-281 (382)
20 KOG0444 Cytoskeletal regulator 97.8 2E-07 4.4E-12 92.9 -10.1 200 155-376 92-302 (1255)
21 KOG0444 Cytoskeletal regulator 97.5 8.9E-07 1.9E-11 88.5 -9.9 67 304-381 312-378 (1255)
22 KOG3207 Beta-tubulin folding c 97.5 3.5E-05 7.6E-10 74.3 0.7 101 167-267 172-280 (505)
23 PRK15387 E3 ubiquitin-protein 97.4 0.00041 8.8E-09 74.1 7.6 143 155-322 213-356 (788)
24 PRK15387 E3 ubiquitin-protein 97.2 0.0008 1.7E-08 71.9 7.4 33 168-201 243-275 (788)
25 KOG1947 Leucine rich repeat pr 97.2 2.3E-05 5E-10 80.6 -4.3 86 161-247 209-306 (482)
26 PF14580 LRR_9: Leucine-rich r 97.2 0.00022 4.7E-09 62.1 2.4 66 306-376 86-151 (175)
27 KOG1909 Ran GTPase-activating 97.2 0.0001 2.2E-09 69.2 0.3 97 338-445 185-283 (382)
28 KOG2982 Uncharacterized conser 97.2 0.00029 6.2E-09 64.9 3.1 239 168-429 46-307 (418)
29 KOG3665 ZYG-1-like serine/thre 97.0 0.00016 3.5E-09 76.6 0.4 79 167-246 122-205 (699)
30 PRK15370 E3 ubiquitin-protein 97.0 0.00064 1.4E-08 72.9 4.5 103 155-268 190-293 (754)
31 KOG1259 Nischarin, modulator o 97.0 0.00018 3.8E-09 66.3 0.2 243 153-427 169-450 (490)
32 PRK15370 E3 ubiquitin-protein 96.9 0.00057 1.2E-08 73.2 3.1 84 155-247 211-294 (754)
33 PF13855 LRR_8: Leucine rich r 96.9 0.0003 6.4E-09 49.8 0.5 56 168-224 2-60 (61)
34 KOG1947 Leucine rich repeat pr 96.9 5.2E-05 1.1E-09 78.0 -5.0 185 161-376 238-438 (482)
35 PF07723 LRR_2: Leucine Rich R 96.7 0.0025 5.4E-08 36.3 3.1 25 189-213 1-26 (26)
36 KOG0618 Serine/threonine phosp 96.7 9.7E-05 2.1E-09 77.6 -4.8 74 298-381 373-446 (1081)
37 PF14580 LRR_9: Leucine-rich r 96.6 0.003 6.6E-08 55.0 4.8 112 302-440 36-148 (175)
38 KOG0472 Leucine-rich repeat pr 96.5 0.00031 6.7E-09 67.3 -2.0 227 124-376 243-539 (565)
39 KOG3665 ZYG-1-like serine/thre 96.5 0.0017 3.6E-08 69.0 2.8 119 299-440 164-283 (699)
40 KOG0617 Ras suppressor protein 96.1 6.5E-05 1.4E-09 63.5 -7.9 82 162-246 29-112 (264)
41 PF13855 LRR_8: Leucine rich r 96.1 0.0035 7.6E-08 44.2 2.1 48 153-200 11-61 (61)
42 KOG0618 Serine/threonine phosp 96.1 0.0005 1.1E-08 72.5 -3.7 48 153-201 78-127 (1081)
43 KOG0617 Ras suppressor protein 95.6 0.00015 3.2E-09 61.4 -7.8 162 182-381 27-189 (264)
44 KOG4237 Extracellular matrix p 95.2 0.0038 8.2E-08 59.9 -1.0 67 302-378 268-335 (498)
45 PF12799 LRR_4: Leucine Rich r 95.1 0.013 2.8E-07 38.2 1.6 35 188-224 1-35 (44)
46 KOG4237 Extracellular matrix p 95.1 0.003 6.5E-08 60.6 -2.0 49 153-201 77-129 (498)
47 KOG1859 Leucine-rich repeat pr 94.7 0.0026 5.6E-08 65.6 -3.7 199 98-318 53-289 (1096)
48 KOG0472 Leucine-rich repeat pr 94.3 3E-05 6.4E-10 74.0 -17.2 67 153-222 78-146 (565)
49 PF12799 LRR_4: Leucine Rich r 94.1 0.012 2.6E-07 38.4 -0.3 34 168-201 2-37 (44)
50 KOG1644 U2-associated snRNP A' 94.1 0.1 2.2E-06 45.8 5.3 52 169-223 44-98 (233)
51 KOG0281 Beta-TrCP (transducin 94.1 0.012 2.6E-07 55.1 -0.4 35 5-39 72-110 (499)
52 KOG4658 Apoptotic ATPase [Sign 94.1 0.007 1.5E-07 66.2 -2.3 102 164-268 543-652 (889)
53 KOG3864 Uncharacterized conser 93.9 0.0091 2E-07 52.2 -1.5 92 155-247 90-187 (221)
54 KOG2739 Leucine-rich acidic nu 93.7 0.016 3.4E-07 52.8 -0.4 80 168-247 44-127 (260)
55 KOG1259 Nischarin, modulator o 93.2 0.054 1.2E-06 50.3 2.2 64 204-267 173-246 (490)
56 PLN03150 hypothetical protein; 93.1 0.058 1.3E-06 57.3 2.6 79 168-247 419-501 (623)
57 PLN03215 ascorbic acid mannose 92.7 0.062 1.3E-06 52.4 1.9 32 8-39 4-36 (373)
58 KOG2982 Uncharacterized conser 92.5 0.05 1.1E-06 50.6 0.8 144 167-320 97-261 (418)
59 KOG4658 Apoptotic ATPase [Sign 92.1 0.055 1.2E-06 59.3 0.9 142 168-316 524-676 (889)
60 PRK15386 type III secretion pr 91.7 0.18 3.8E-06 50.0 3.7 107 168-286 73-185 (426)
61 PLN03150 hypothetical protein; 91.6 0.081 1.8E-06 56.3 1.4 66 157-224 433-501 (623)
62 PRK15386 type III secretion pr 91.6 0.23 5E-06 49.1 4.4 54 187-247 51-105 (426)
63 KOG1644 U2-associated snRNP A' 91.5 0.38 8.2E-06 42.4 5.1 96 302-420 58-156 (233)
64 COG4886 Leucine-rich repeat (L 91.4 0.078 1.7E-06 53.0 1.0 161 168-347 117-286 (394)
65 KOG2997 F-box protein FBX9 [Ge 90.3 0.099 2.2E-06 48.8 0.5 35 5-39 104-143 (366)
66 COG5238 RNA1 Ran GTPase-activa 89.4 0.28 6E-06 45.2 2.6 177 184-376 88-283 (388)
67 smart00367 LRR_CC Leucine-rich 89.1 0.26 5.5E-06 27.9 1.4 22 187-208 1-23 (26)
68 smart00367 LRR_CC Leucine-rich 88.8 0.22 4.7E-06 28.2 1.0 17 212-228 1-17 (26)
69 KOG3864 Uncharacterized conser 87.8 0.78 1.7E-05 40.5 4.2 111 336-471 97-210 (221)
70 PF13516 LRR_6: Leucine Rich r 86.4 0.38 8.2E-06 26.5 1.0 22 187-208 1-22 (24)
71 KOG2739 Leucine-rich acidic nu 85.7 0.11 2.4E-06 47.4 -2.2 78 237-317 66-152 (260)
72 KOG0274 Cdc4 and related F-box 78.1 0.87 1.9E-05 47.3 0.7 36 4-39 104-139 (537)
73 COG5238 RNA1 Ran GTPase-activa 74.6 11 0.00024 35.1 6.6 70 362-443 154-225 (388)
74 PF00560 LRR_1: Leucine Rich R 73.4 2.1 4.5E-05 23.0 1.1 12 169-180 2-13 (22)
75 KOG0531 Protein phosphatase 1, 71.9 1.3 2.8E-05 44.7 0.1 99 164-267 93-195 (414)
76 COG4886 Leucine-rich repeat (L 71.6 0.97 2.1E-05 45.2 -0.9 156 153-320 126-289 (394)
77 PF13013 F-box-like_2: F-box-l 71.3 2.2 4.9E-05 33.8 1.3 30 7-36 21-50 (109)
78 KOG2123 Uncharacterized conser 69.7 0.58 1.3E-05 43.3 -2.6 65 302-376 35-99 (388)
79 PF13504 LRR_7: Leucine rich r 67.6 2.6 5.7E-05 21.1 0.6 11 214-224 2-12 (17)
80 PF08387 FBD: FBD; InterPro: 66.9 9.3 0.0002 25.6 3.5 37 337-373 13-50 (51)
81 smart00368 LRR_RI Leucine rich 64.5 5.7 0.00012 22.8 1.8 22 188-209 2-23 (28)
82 KOG2123 Uncharacterized conser 61.3 1.5 3.3E-05 40.7 -1.6 54 168-222 42-97 (388)
83 KOG1859 Leucine-rich repeat pr 60.4 0.54 1.2E-05 49.3 -5.1 31 169-199 189-220 (1096)
84 KOG3926 F-box proteins [Amino 51.6 3.4 7.3E-05 38.0 -1.0 51 7-57 201-256 (332)
85 KOG4579 Leucine-rich repeat (L 48.4 2.9 6.2E-05 34.8 -1.8 55 168-224 54-111 (177)
86 PF09372 PRANC: PRANC domain; 47.7 14 0.0003 28.6 2.0 25 6-30 70-94 (97)
87 PF13306 LRR_5: Leucine rich r 44.6 15 0.00033 29.6 1.9 56 164-222 10-67 (129)
88 KOG0531 Protein phosphatase 1, 43.9 7.1 0.00015 39.3 -0.2 95 168-267 73-171 (414)
89 smart00579 FBD domain in FBox 43.1 43 0.00094 24.0 3.9 39 338-376 5-44 (72)
90 KOG0532 Leucine-rich repeat (L 40.6 0.42 9.2E-06 48.6 -9.2 48 153-201 85-134 (722)
91 KOG4579 Leucine-rich repeat (L 37.5 7.6 0.00016 32.4 -0.9 49 153-201 63-113 (177)
92 KOG4408 Putative Mg2+ and Co2+ 36.9 8.9 0.00019 36.5 -0.7 33 7-39 7-39 (386)
93 KOG0532 Leucine-rich repeat (L 36.1 6.6 0.00014 40.4 -1.8 47 153-201 131-179 (722)
94 smart00369 LRR_TYP Leucine-ric 30.1 28 0.0006 19.2 0.9 14 188-201 2-15 (26)
95 smart00370 LRR Leucine-rich re 30.1 28 0.0006 19.2 0.9 14 188-201 2-15 (26)
96 KOG3445 Mitochondrial/chloropl 26.8 1.5E+02 0.0033 24.4 4.8 42 430-471 19-62 (145)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.65 E-value=9.2e-18 Score=157.70 Aligned_cols=350 Identities=18% Similarity=0.210 Sum_probs=196.3
Q ss_pred CCchHHHHHHHhcCChhhHhhhhhhccccc----ccccccccceeEeecCcccCcccchhhcccccchhhhhHhhhhhhh
Q 038350 10 DFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGRLK 85 (472)
Q Consensus 10 ~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (472)
.||.|++..|||+|+++..+|++.+|+-|. |..-|..+..++|...--
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~---------------------------- 125 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD---------------------------- 125 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC----------------------------
Confidence 499999999999999999999999999998 334588777776653221
Q ss_pred HHHHHHHHHHhhcCCCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccC
Q 038350 86 YFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQ 165 (472)
Q Consensus 86 ~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~ 165 (472)
..|-..+.++.|..+++++++.....+ ...+.... ...+++++|.+.... . ...-.+-..--.|
T Consensus 126 --g~VV~~~~~Rcgg~lk~LSlrG~r~v~--~sslrt~~--~~CpnIehL~l~gc~--~--------iTd~s~~sla~~C 189 (483)
T KOG4341|consen 126 --GGVVENMISRCGGFLKELSLRGCRAVG--DSSLRTFA--SNCPNIEHLALYGCK--K--------ITDSSLLSLARYC 189 (483)
T ss_pred --CcceehHhhhhccccccccccccccCC--cchhhHHh--hhCCchhhhhhhcce--e--------ccHHHHHHHHHhc
Confidence 112223445567788999988876543 22322221 224666666543211 0 0000111111124
Q ss_pred CceEEEEEEeeee-ecCC----CCCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCcee---EEEeeCCC
Q 038350 166 GMCIRVLNINSCG-LGLC----NFVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFK---VEITLRTL 236 (472)
Q Consensus 166 ~~~L~~L~L~~~~-l~~~----~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~---l~i~~~~~ 236 (472)
. .|++|+|.+|. ++.. -..+|++|++|++++| .+.+++++.+..+|..|+.+.+.+|...+. ..+.+.++
T Consensus 190 ~-~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 190 R-KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred c-hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 4 55555555542 1111 1145555555555555 344455555555555555555555544332 12233333
Q ss_pred CeeEEEEeeccCCcee-----EEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCc
Q 038350 237 GLRKLIVRHCQSLSLG-----IELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDAR 311 (472)
Q Consensus 237 ~L~~L~l~~c~~~~~~-----~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~ 311 (472)
-+.++++..|. .+.. +.-.+..|+.+.+.+. .. .....+..+...+++|+
T Consensus 269 ~i~~lnl~~c~-~lTD~~~~~i~~~c~~lq~l~~s~~--------------------t~----~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 269 EILKLNLQHCN-QLTDEDLWLIACGCHALQVLCYSSC--------------------TD----ITDEVLWALGQHCHNLQ 323 (483)
T ss_pred Hhhccchhhhc-cccchHHHHHhhhhhHhhhhcccCC--------------------CC----CchHHHHHHhcCCCceE
Confidence 44444444443 1111 1111223333333221 11 11235668888899999
Q ss_pred EEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCC
Q 038350 312 ILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLS 391 (472)
Q Consensus 312 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~ 391 (472)
.|.+.++. .++..+-. .-...+..|+.|.+..+....+. .+..+-.+||.||+|.++.+.. +.| +
T Consensus 324 ~l~l~~c~--~fsd~~ft--~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslshce~--itD--~------ 388 (483)
T KOG4341|consen 324 VLELSGCQ--QFSDRGFT--MLGRNCPHLERLDLEECGLITDG-TLASLSRNCPRLRVLSLSHCEL--ITD--E------ 388 (483)
T ss_pred EEeccccc--hhhhhhhh--hhhcCChhhhhhcccccceehhh-hHhhhccCCchhccCChhhhhh--hhh--h------
Confidence 99997663 23321211 11246788999998876554433 7888999999999999997742 111 0
Q ss_pred cccccccccc-cccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccccCcc
Q 038350 392 RGEIWTTNGS-ILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSS 448 (472)
Q Consensus 392 ~~~~w~~~~~-~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~~ 448 (472)
+.-=..... ...+|+.+++.+......+ .+++ +.++++||++.++..+..+.+
T Consensus 389 -gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le~-l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 389 -GIRHLSSSSCSLEGLEVLELDNCPLITDA--TLEH-LSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred -hhhhhhhccccccccceeeecCCCCchHH--HHHH-HhhCcccceeeeechhhhhhh
Confidence 000011111 6679999999998775332 3343 358999999999888876544
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.3e-16 Score=142.12 Aligned_cols=280 Identities=16% Similarity=0.174 Sum_probs=146.5
Q ss_pred CCCCchHHHHHHHhcCChhhHhhhhhhccccc----ccccccccceeEeecCcccCcccchhhcccccchhhhhHhhhhh
Q 038350 8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHCRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIGR 83 (472)
Q Consensus 8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (472)
+..|||||+..||+.|+-+|..+.+.|||||+ |..+|..+ ++....+.+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i~p------------------------ 150 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNIHP------------------------ 150 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCccCh------------------------
Confidence 67899999999999999999999999999998 33345433 111111110
Q ss_pred hhHHHHHHHHHHhhcCCCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccc
Q 038350 84 LKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFY 163 (472)
Q Consensus 84 ~~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~ 163 (472)
+...+.+. .+|..|++.-.... ...+..... .++..++.+++..... ..-.+--.+.
T Consensus 151 ----~~l~~l~~----rgV~v~Rlar~~~~---~prlae~~~-~frsRlq~lDLS~s~i-----------t~stl~~iLs 207 (419)
T KOG2120|consen 151 ----DVLGRLLS----RGVIVFRLARSFMD---QPRLAEHFS-PFRSRLQHLDLSNSVI-----------TVSTLHGILS 207 (419)
T ss_pred ----hHHHHHHh----CCeEEEEcchhhhc---Cchhhhhhh-hhhhhhHHhhcchhhe-----------eHHHHHHHHH
Confidence 11112211 23455554432221 111111111 1233455555543211 1111222333
Q ss_pred cCCceEEEEEEeeeeecCC---CCCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCcee---EEEeeCCC
Q 038350 164 EQGMCIRVLNINSCGLGLC---NFVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFK---VEITLRTL 236 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~l~~~---~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~---l~i~~~~~ 236 (472)
.|. .|+.|+|.+..+..+ ..+.-.+|+.|+|+.| .|+..+++-++++|..|.+|+|..|.-... +.++.-.+
T Consensus 208 ~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 208 QCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 455 666666666666532 2345566667766655 455666666667777777777766643322 11122233
Q ss_pred CeeEEEEeeccC-----CceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCc
Q 038350 237 GLRKLIVRHCQS-----LSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDAR 311 (472)
Q Consensus 237 ~L~~L~l~~c~~-----~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~ 311 (472)
+|+.|++++|.- .+..+.-.+|+|..|++++ +... .+.+...+..++.|+
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD--------------------~v~l-----~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD--------------------SVML-----KNDCFQEFFKFNYLQ 341 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc--------------------cccc-----CchHHHHHHhcchhe
Confidence 666666665541 1112223344444444443 2111 113455566788888
Q ss_pred EEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEE
Q 038350 312 ILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLA 371 (472)
Q Consensus 312 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~ 371 (472)
+|.++-+. ...+. .- ..+...+.|+.|++..+.+.. .+.-+.+.||+|+.-.
T Consensus 342 ~lSlsRCY-~i~p~---~~-~~l~s~psl~yLdv~g~vsdt---~mel~~e~~~~lkin~ 393 (419)
T KOG2120|consen 342 HLSLSRCY-DIIPE---TL-LELNSKPSLVYLDVFGCVSDT---TMELLKEMLSHLKINC 393 (419)
T ss_pred eeehhhhc-CCChH---He-eeeccCcceEEEEeccccCch---HHHHHHHhCccccccc
Confidence 88887653 11110 01 224556788888887765543 5666677888876543
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.15 E-value=1e-10 Score=86.48 Aligned_cols=69 Identities=28% Similarity=0.420 Sum_probs=60.7
Q ss_pred ccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccccCcchhhHHHHHHHHhhhccCCeEEeeC
Q 038350 403 LDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINWS 472 (472)
Q Consensus 403 ~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~~~~~~~~~~l~~~~~as~~~~i~~~ 472 (472)
..+|++|+|.||.|..+|+++++|+++||+.||+|+|.......+. ...+.+++..++|||++|+|.|.
T Consensus 4 ~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~-~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 4 LSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDE-KLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred hheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccH-HHHHHHHHHhCcCCCCceEEEeC
Confidence 4689999999999999999999999999999999999987764433 35677899999999999999873
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.97 E-value=7.4e-10 Score=123.91 Aligned_cols=202 Identities=18% Similarity=0.172 Sum_probs=108.3
Q ss_pred cCCcccc-cCCceEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-Eee
Q 038350 157 VLPHFFY-EQGMCIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-ITL 233 (472)
Q Consensus 157 ~lp~~~~-~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i~~ 233 (472)
.+|..++ .+. +|++|+|+++.+. ..+...+++|++|+|+++.+.. .+...+.++++|+.|++.+|.-.+.+. .-+
T Consensus 108 ~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 108 PIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred cCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 5676666 556 8888888887664 2223567888888888777652 223336677888888888775322211 112
Q ss_pred CCCCeeEEEEeeccCC--ceeEEEeCCCeeEEEEeeee----ceEeecCCCceeEEEEEEeecccccCchhhHHhhcccC
Q 038350 234 RTLGLRKLIVRHCQSL--SLGIELWLPRLQYFEYAGKM----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPF 307 (472)
Q Consensus 234 ~~~~L~~L~l~~c~~~--~~~~~i~~p~L~~L~l~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l 307 (472)
.+++|+.|.+.+|... ....--..++|+.|.+.+.. .+-.++++++|+.+++..+.... .++..+..+
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l 259 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG------PIPSSLGNL 259 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc------ccChhHhCC
Confidence 3457777777777531 11111235567777765531 12234566677777665432111 233345566
Q ss_pred CCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 308 SDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
++|++|.++.+.+. +..| ..+..+.+|++|++..+.-. ..++..+..+++|+.|++..+
T Consensus 260 ~~L~~L~L~~n~l~-----~~~p-~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 260 KNLQYLFLYQNKLS-----GPIP-PSIFSLQKLISLDLSDNSLS---GEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CCCCEEECcCCeee-----ccCc-hhHhhccCcCEEECcCCeec---cCCChhHcCCCCCcEEECCCC
Confidence 66666666655432 1122 22334455555555432110 123334455556666655544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.85 E-value=3.2e-09 Score=118.79 Aligned_cols=249 Identities=16% Similarity=0.087 Sum_probs=150.2
Q ss_pred CCcccccCCceEEEEEEeeeeec---CCC-CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-Ee
Q 038350 158 LPHFFYEQGMCIRVLNINSCGLG---LCN-FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-IT 232 (472)
Q Consensus 158 lp~~~~~~~~~L~~L~L~~~~l~---~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i~ 232 (472)
+|..+.... +|++|+|+++.+. |.. +.++++|++|+|+++.+.+..- ....++|+.|++.+|.-.+.+. ..
T Consensus 85 ~~~~~~~l~-~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~ 160 (968)
T PLN00113 85 ISSAIFRLP-YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDI 160 (968)
T ss_pred CChHHhCCC-CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHH
Confidence 344444455 8999999888664 223 3488899999998887753211 1357889999998875322221 12
Q ss_pred eCCCCeeEEEEeeccC--CceeEEEeCCCeeEEEEeeee----ceEeecCCCceeEEEEEEeecccccCchhhHHhhccc
Q 038350 233 LRTLGLRKLIVRHCQS--LSLGIELWLPRLQYFEYAGKM----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNP 306 (472)
Q Consensus 233 ~~~~~L~~L~l~~c~~--~~~~~~i~~p~L~~L~l~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~ 306 (472)
..+++|+.|.+++|.. .........++|++|++.+.. .+-.++++++|+.+++..+.... .++..+..
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~ 234 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG------EIPYEIGG 234 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC------cCChhHhc
Confidence 3356889999888863 112222356788888887642 12345677888888776542211 23345677
Q ss_pred CCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCC
Q 038350 307 FSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPN 386 (472)
Q Consensus 307 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~ 386 (472)
+++|++|+++.+.+. +..| ..+..+.+|+.|.+..+.-.. .++.-+..+++|+.|+++.+......
T Consensus 235 l~~L~~L~L~~n~l~-----~~~p-~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~----- 300 (968)
T PLN00113 235 LTSLNHLDLVYNNLT-----GPIP-SSLGNLKNLQYLFLYQNKLSG---PIPPSIFSLQKLISLDLSDNSLSGEI----- 300 (968)
T ss_pred CCCCCEEECcCceec-----cccC-hhHhCCCCCCEEECcCCeeec---cCchhHhhccCcCEEECcCCeeccCC-----
Confidence 888999998776543 2234 445667788888886432111 23344567889999988776321110
Q ss_pred CCCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350 387 YFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR 444 (472)
Q Consensus 387 ~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~ 444 (472)
+ .| ...+++|+.+.+.+-.-.. .+...+.+.++|+.+.+.....
T Consensus 301 -----p--~~---~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 301 -----P--EL---VIQLQNLEILHLFSNNFTG----KIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred -----C--hh---HcCCCCCcEEECCCCccCC----cCChhHhcCCCCCEEECcCCCC
Confidence 0 00 1145788888876532111 1112346789999999976543
No 6
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=98.79 E-value=7.4e-09 Score=70.34 Aligned_cols=39 Identities=33% Similarity=0.735 Sum_probs=37.5
Q ss_pred cccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350 402 ILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK 440 (472)
Q Consensus 402 ~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~ 440 (472)
..+|||.|+|.||.|..+|+++++|+++||++||+|+|.
T Consensus 12 l~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 12 LLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 668999999999999999999999999999999999996
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.72 E-value=1.6e-09 Score=106.75 Aligned_cols=205 Identities=18% Similarity=0.188 Sum_probs=115.5
Q ss_pred CcccCCcccccCCceEEEEEEeeeeecC---CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLGL---CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE 230 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~ 230 (472)
.-..+|....... +|+.|.|.++.++. ..+.-+|.|++|+|+.+.++.-... -+..-+++++|+|.+.. ++.+.
T Consensus 113 ~Lt~IP~f~~~sg-hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~L~La~N~-It~l~ 189 (873)
T KOG4194|consen 113 ELTRIPRFGHESG-HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKKLNLASNR-ITTLE 189 (873)
T ss_pred hhhhccccccccc-ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceEEeecccc-ccccc
Confidence 3445565443334 67777777775542 3346677777777777655410000 02223567777777653 33332
Q ss_pred E--eeCCCCeeEEEEeeccC-CceeEE-EeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHh
Q 038350 231 I--TLRTLGLRKLIVRHCQS-LSLGIE-LWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIES 302 (472)
Q Consensus 231 i--~~~~~~L~~L~l~~c~~-~~~~~~-i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 302 (472)
. ...+.+|..|.+.+... .+.... ...|+|+.|++..... .+.+.++++|+.+.+.-...+.-++ .
T Consensus 190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D------G 263 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD------G 263 (873)
T ss_pred cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC------c
Confidence 2 11223666677766653 122222 2377788888765322 3456778888877664322211111 3
Q ss_pred hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350 303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGAI 377 (472)
Q Consensus 303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~~ 377 (472)
.+.++.++++|+|..+.++.... .++..+..|++|+++.+- ......+ -..||+|+.|+++.+..
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~------g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNE------GWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSNRI 329 (873)
T ss_pred ceeeecccceeecccchhhhhhc------ccccccchhhhhccchhhhheeecch----hhhcccceeEecccccc
Confidence 46678888888888776654433 456667788888886431 1111111 14589999999988854
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.67 E-value=2.6e-08 Score=112.50 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=57.1
Q ss_pred ccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEE-eChHHHHHHHhcCCCcceEeecccCCceeEEEe
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVR-LSWAAMENIAHNCPFLETLSLVECYRIFKVEIT 232 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~ 232 (472)
..+|..+ ... +|++|++.++.+. +.++..+++|+.|+|+++. +. .+.. ++.+++|+.|++.+|..+..+...
T Consensus 602 ~~lP~~f-~~~-~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~--~ip~-ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 602 RCMPSNF-RPE-NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK--EIPD-LSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCCCCcC-Ccc-CCcEEECcCccccccccccccCCCCCEEECCCCCCcC--cCCc-cccCCcccEEEecCCCCccccchh
Confidence 3455543 334 7777777776554 3445667777777776542 22 1111 455677777777777655433221
Q ss_pred -eCCCCeeEEEEeeccCCceeEE--EeCCCeeEEEEee
Q 038350 233 -LRTLGLRKLIVRHCQSLSLGIE--LWLPRLQYFEYAG 267 (472)
Q Consensus 233 -~~~~~L~~L~l~~c~~~~~~~~--i~~p~L~~L~l~~ 267 (472)
..+++|+.|.+.+|. .+..+. +..++|++|.++|
T Consensus 677 i~~L~~L~~L~L~~c~-~L~~Lp~~i~l~sL~~L~Lsg 713 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCE-NLEILPTGINLKSLYRLNLSG 713 (1153)
T ss_pred hhccCCCCEEeCCCCC-CcCccCCcCCCCCCCEEeCCC
Confidence 223466666666665 222221 2445566666555
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.58 E-value=1e-08 Score=101.19 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=52.5
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC 223 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 223 (472)
+...++|...|...+++++|+|.++.+. ...|.++.+|.+|.|++++++. --...+++.|.||.|+|.+.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhcccc
Confidence 4455666666666559999999998776 3557888899999999998872 12344677899999999874
No 10
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.56 E-value=2.4e-08 Score=66.92 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=29.0
Q ss_pred CCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350 8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY 39 (472)
Q Consensus 8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr 39 (472)
|+.||+||+.+||++|+.+|.++++.|||+|+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~ 32 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWR 32 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.38 E-value=4.7e-07 Score=87.83 Aligned_cols=245 Identities=16% Similarity=0.082 Sum_probs=118.1
Q ss_pred eEEEEEEeeeeecCC-------CCCCcccccEEEeeeEEeC--hHH---HHHHHhcCCCcceEeecccCCceeE-----E
Q 038350 168 CIRVLNINSCGLGLC-------NFVNFIQLTSLALTRVRLS--WAA---MENIAHNCPFLETLSLVECYRIFKV-----E 230 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~-------~~~~~~~L~~L~L~~~~~~--~~~---l~~l~~~cp~Le~L~l~~c~~~~~l-----~ 230 (472)
.|++|.+.++.+.+. .+..+++|++|++..+.+. ... +...+..++.|+.|++.+|.-.... .
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 577777777766421 1245566777777666554 222 2233445667777777776532110 0
Q ss_pred EeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCC-CceeEEEEEEeecccccCchhhHHhhcccCCC
Q 038350 231 ITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGM-DDLEVVVLDYRLDTRYSYNGDDIESLFNPFSD 309 (472)
Q Consensus 231 i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~ 309 (472)
+... ++|++|++.+|........ ...-.+..+ ++|+++++..+.-.. .....+...+..+++
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~--------------~l~~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~ 166 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLR--------------LLAKGLKDLPPALEKLVLGRNRLEG--ASCEALAKALRANRD 166 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHH--------------HHHHHHHhCCCCceEEEcCCCcCCc--hHHHHHHHHHHhCCC
Confidence 0011 2466666666542100000 000011223 445555444332110 001134455666677
Q ss_pred CcEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCC
Q 038350 310 ARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYF 388 (472)
Q Consensus 310 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~ 388 (472)
|++|+++++.+..... ...+ ..+..+.+|++|.+..+. .......+...+..+|+|+.|++..+......
T Consensus 167 L~~L~l~~n~l~~~~~-~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~------- 237 (319)
T cd00116 167 LKELNLANNGIGDAGI-RALA-EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG------- 237 (319)
T ss_pred cCEEECcCCCCchHHH-HHHH-HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH-------
Confidence 8888887665432100 0011 123345678888876542 22334456666777888888888776311000
Q ss_pred CCCccccccccc-c-cccCccEEEEEeeecCh-hhHHHHHHHHhcCccceEEEEeeccc
Q 038350 389 PLSRGEIWTTNG-S-ILDHLECVQFEGFTGKI-CEIDLVKFLLRNSRSIKELNIKQLIR 444 (472)
Q Consensus 389 ~~~~~~~w~~~~-~-~~~~L~~v~i~~f~g~~-~e~~~~~~ll~~~~~L~~l~i~~~~~ 444 (472)
....... . ....|+.+.+.+..-++ +...+.+. +.+.+.|+.+.+....-
T Consensus 238 -----~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 238 -----AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKF 290 (319)
T ss_pred -----HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCC
Confidence 0000000 0 13577777776643322 22344443 34457788777765544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=4.5e-07 Score=102.57 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=75.4
Q ss_pred ccCCcccccCCceEEEEEEeeee-ec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEee
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCG-LG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITL 233 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~-l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~ 233 (472)
..+|..+..+. +|++|+|+++. +. .+.+..+++|++|+|.+|..- ..+..-+..+++|+.|++.+|..++.+....
T Consensus 624 ~~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 624 EKLWDGVHSLT-GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cccccccccCC-CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 34565555566 89999998763 33 345678899999999887432 1333446778899999999998877665444
Q ss_pred CCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeee
Q 038350 234 RTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGK 268 (472)
Q Consensus 234 ~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~ 268 (472)
.+++|+.|.+.+|. .+..+.-..++|++|.+.+.
T Consensus 702 ~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 702 NLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CCCCCCEEeCCCCC-CccccccccCCcCeeecCCC
Confidence 56688999998886 34444333457777777653
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.23 E-value=4.9e-07 Score=87.71 Aligned_cols=272 Identities=17% Similarity=0.099 Sum_probs=148.9
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec--CC-------CCCCcccccEEEeeeEEe
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG--LC-------NFVNFIQLTSLALTRVRL 200 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~-------~~~~~~~L~~L~L~~~~~ 200 (472)
.+++++.+....... .....++..+...+ +|++|.++++.+. +. .+..+++|+.|+++++.+
T Consensus 23 ~~L~~l~l~~~~l~~--------~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 23 LCLQVLRLEGNTLGE--------EAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred hhccEEeecCCCCcH--------HHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 458888876332110 11234555555555 8999999887665 22 245688999999999988
Q ss_pred C---hHHHHHHHhcCCCcceEeecccCCce-eEE----EeeCC-CCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeece
Q 038350 201 S---WAAMENIAHNCPFLETLSLVECYRIF-KVE----ITLRT-LGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVP 271 (472)
Q Consensus 201 ~---~~~l~~l~~~cp~Le~L~l~~c~~~~-~l~----i~~~~-~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~ 271 (472)
. ...+..+..+ ++|+.|++.+|.-.. ... ....+ ++|++|.+.+|........ ...
T Consensus 94 ~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------~~~ 158 (319)
T cd00116 94 GPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE--------------ALA 158 (319)
T ss_pred ChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--------------HHH
Confidence 6 3445555555 779999999986321 110 01122 5888888888863100000 000
Q ss_pred EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCc
Q 038350 272 FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLER 351 (472)
Q Consensus 272 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 351 (472)
-.+..+++|+.+++..+.-.. .....+...+..+++|+.|+++.+.+..... .... ..+..+.+|++|++..+.-
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~-~~~~~~~~L~~L~ls~n~l- 233 (319)
T cd00116 159 KALRANRDLKELNLANNGIGD--AGIRALAEGLKANCNLEVLDLNNNGLTDEGA-SALA-ETLASLKSLEVLNLGDNNL- 233 (319)
T ss_pred HHHHhCCCcCEEECcCCCCch--HHHHHHHHHHHhCCCCCEEeccCCccChHHH-HHHH-HHhcccCCCCEEecCCCcC-
Confidence 011223344444443221110 0011233344556789999998765432111 1111 2345577889998875421
Q ss_pred hhHHHHHHHHhc----CCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEee-ecChhhHHHHHH
Q 038350 352 FELAAIICLLIS----SPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGF-TGKICEIDLVKF 426 (472)
Q Consensus 352 ~~~~~l~~ll~~----~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f-~g~~~e~~~~~~ 426 (472)
....+..+... .+.|++|++..+... + ... ... ....+...+|+.+.+.+- -+.+....+++-
T Consensus 234 -~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~---~---~~~----~~l-~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 234 -TDAGAAALASALLSPNISLLTLSLSCNDIT---D---DGA----KDL-AEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred -chHHHHHHHHHHhccCCCceEEEccCCCCC---c---HHH----HHH-HHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 11234444444 589999999887421 0 000 000 011114467888887652 234556778888
Q ss_pred HHhcCccceEEEEeec
Q 038350 427 LLRNSRSIKELNIKQL 442 (472)
Q Consensus 427 ll~~~~~L~~l~i~~~ 442 (472)
+..+.+.|+.+.|...
T Consensus 302 ~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 302 LLEPGNELESLWVKDD 317 (319)
T ss_pred HhhcCCchhhcccCCC
Confidence 8888889998887543
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.9e-08 Score=90.41 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=117.2
Q ss_pred eEEEEEEeeeeecCCC----CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE---eeCCCCeeE
Q 038350 168 CIRVLNINSCGLGLCN----FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI---TLRTLGLRK 240 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~~----~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i---~~~~~~L~~ 240 (472)
.|++|+|++-.++... +..|..|+.|+|.+..++|.-. .-++.-.+|+.|+|.+|.|++...+ -..+.+|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 6999999887666322 3788899999999988876544 4466778999999999988765432 233558888
Q ss_pred EEEeeccCCceeE----EEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEe
Q 038350 241 LIVRHCQSLSLGI----ELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVS 316 (472)
Q Consensus 241 L~l~~c~~~~~~~----~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~ 316 (472)
|+++.|...-+.+ .--.++|..|.++|+...+ + ...+..+...+|+|..|+++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--------------------~---~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--------------------Q---KSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--------------------h---hhHHHHHHHhCCceeeeccc
Confidence 9999997411111 1125677788877753211 0 12466777889999999998
Q ss_pred cccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 317 TSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
.+..- .. + .. ..+.+|+.|++|.++.|-.. .. ...-.+++-|.|..|++.++-
T Consensus 322 D~v~l--~~-~-~~-~~~~kf~~L~~lSlsRCY~i-~p-~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 322 DSVML--KN-D-CF-QEFFKFNYLQHLSLSRCYDI-IP-ETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccc--Cc-h-HH-HHHHhcchheeeehhhhcCC-Ch-HHeeeeccCcceEEEEecccc
Confidence 76421 10 0 11 34567888899988766321 11 122236788889999888873
No 15
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.09 E-value=4.1e-07 Score=61.27 Aligned_cols=35 Identities=37% Similarity=0.647 Sum_probs=29.3
Q ss_pred CCCCchHHHHHHHhcCChhhHhhhhhhcccccccccc
Q 038350 8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLW 44 (472)
Q Consensus 8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~~~~w 44 (472)
+++||+|++.+||++|+.+|.++++.|||+|+ ++.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~--~~~ 37 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWR--SLV 37 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHH--HHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHH--HHH
Confidence 46799999999999999999999999999999 654
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.08 E-value=4.9e-08 Score=92.89 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=74.4
Q ss_pred cccCCceEEEEEEeeeeec-CCC----CCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCceeEEE---e
Q 038350 162 FYEQGMCIRVLNINSCGLG-LCN----FVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFKVEI---T 232 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~-~~~----~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i---~ 232 (472)
+.+|..-|+.|+|.||.=. ... ..+||++++|.+.+| .+++..+..+...|+.|+.|++..|..+++..+ .
T Consensus 133 ~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 133 ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 3455557999999988432 222 278999999999887 677899999899999999999999988776432 3
Q ss_pred eCCCCeeEEEEeeccC----CceeEEEeCCCeeEEEEee
Q 038350 233 LRTLGLRKLIVRHCQS----LSLGIELWLPRLQYFEYAG 267 (472)
Q Consensus 233 ~~~~~L~~L~l~~c~~----~~~~~~i~~p~L~~L~l~~ 267 (472)
..+++|+.|.++.|.. +.+.+.-.+.+++.+...|
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 3456999999999973 1222233344455554444
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.96 E-value=3.1e-06 Score=54.66 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=29.9
Q ss_pred CchHHHHHHHhcCChhhHhhhhhhcccccccccc
Q 038350 11 FHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLW 44 (472)
Q Consensus 11 LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~~~~w 44 (472)
||+|++..||++|+.+|.++++.|||+|+ .+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~--~~~ 32 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWR--SLI 32 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh
Confidence 79999999999999999999999999999 543
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1e-06 Score=84.60 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=122.8
Q ss_pred eEEEEEEeeeeecCCC----CCCcccccEEEeeeEEeC-hHHHHHHHhcCCCcceEeecccCCceeE--EEeeCCCCeeE
Q 038350 168 CIRVLNINSCGLGLCN----FVNFIQLTSLALTRVRLS-WAAMENIAHNCPFLETLSLVECYRIFKV--EITLRTLGLRK 240 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~~----~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~ 240 (472)
.|+...|.++.+...+ ...|++++.|+|+.+-|. -..+..++...|+||.|+|+........ ......+.||.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 6777788877655322 367999999999988666 5678888999999999999976422111 11123459999
Q ss_pred EEEeeccC---CceeEEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEE
Q 038350 241 LIVRHCQS---LSLGIELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARIL 313 (472)
Q Consensus 241 L~l~~c~~---~~~~~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L 313 (472)
|.+..|.+ ....+....|+|+.|.+.+... .........|++++++-.....++ -......+++|+.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QGYKVGTLPGLNQL 276 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----cccccccccchhhh
Confidence 99999986 3455678899999999876521 112233444677766643322222 11334567777777
Q ss_pred EEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 314 QVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
.++.+.+..+..+........-.|++|+.|.+..+. ..++..+- -++..++|+.|.+...
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~-~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLN-HLRTLENLKHLRITLN 336 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccc-hhhccchhhhhhcccc
Confidence 776665554332110000112457788888876431 11121111 2455677777776554
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.83 E-value=1e-05 Score=75.69 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=102.3
Q ss_pred CCCcccccEEEeeeEEeC---hHHHHHHHhcCCCcceEeecccCCceeE---EEeeCCCCeeEEEEeeccCCceeEEEeC
Q 038350 184 FVNFIQLTSLALTRVRLS---WAAMENIAHNCPFLETLSLVECYRIFKV---EITLRTLGLRKLIVRHCQSLSLGIELWL 257 (472)
Q Consensus 184 ~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~~~~~~~i~~ 257 (472)
+.++|.|++|+|+++.|. .+.+..++++|..|++|.|.+|.. +.. .+.. .|.+|. .....-+.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~---al~~l~-------~~kk~~~~ 156 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGR---ALFELA-------VNKKAASK 156 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHH---HHHHHH-------HHhccCCC
Confidence 356677888888888776 468899999999999999999842 211 1000 111111 00011223
Q ss_pred CCeeEEEEeeeec--------eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccccccccccc
Q 038350 258 PRLQYFEYAGKMV--------PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLL 329 (472)
Q Consensus 258 p~L~~L~l~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~ 329 (472)
|+|+.|....... --.+...|.|.++.+..... ..+....+..-+..+++|+.|+|..+++..--. ...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I--~~eG~~al~eal~~~~~LevLdl~DNtft~egs-~~L 233 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGI--RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-VAL 233 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccc--cCchhHHHHHHHHhCCcceeeecccchhhhHHH-HHH
Confidence 4444444322100 01233345566665554321 111123455667788999999998776542110 011
Q ss_pred ccCCCcccCCceeEEEecccC-c-hhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 330 CGRQLFQFWQLEHLTLNTGLE-R-FELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 330 ~~~~l~~~~~L~~L~l~~~~~-~-~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
. ..++.+++|+.|.+..|+- . .....+..+-+..|+|+.|.+.++.
T Consensus 234 a-kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 234 A-KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred H-HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 1 3466778899999887652 2 3344555566779999999998884
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.76 E-value=2e-07 Score=92.93 Aligned_cols=200 Identities=15% Similarity=0.097 Sum_probs=124.0
Q ss_pred cccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI- 231 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i- 231 (472)
...+|..+|.-. .|..|+|+++.+. |.++..-+++-.|+|++++|. .--..++.+...|-.|+|+... ++.+.-
T Consensus 92 nsGiP~diF~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ 168 (1255)
T KOG0444|consen 92 NSGIPTDIFRLK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR-LEMLPPQ 168 (1255)
T ss_pred cCCCCchhcccc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch-hhhcCHH
Confidence 345677777777 8888888887775 555666677777888777665 1112233444555566666543 222110
Q ss_pred eeCCCCeeEEEEeeccC---CceeEEEeCCCeeEEEEeee-----eceEeecCCCceeEEEEEEeecccccCchhhHHhh
Q 038350 232 TLRTLGLRKLIVRHCQS---LSLGIELWLPRLQYFEYAGK-----MVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESL 303 (472)
Q Consensus 232 ~~~~~~L~~L~l~~c~~---~~~~~~i~~p~L~~L~l~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l 303 (472)
...+..|++|.+++.+. ++..+ -+..+|+.|.+++. ..+-++.++.+|.+++++...- ..++.-
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-------p~vPec 240 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-------PIVPEC 240 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-------CcchHH
Confidence 01123677777777653 22222 12345666777663 2345677788888887775432 246667
Q ss_pred cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
+..+++|..|.|+++.+..+. .....-.+|..|++ +.+....++.-+-..|.|++|.+..+.
T Consensus 241 ly~l~~LrrLNLS~N~iteL~-------~~~~~W~~lEtLNl----SrNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELN-------MTEGEWENLETLNL----SRNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred HhhhhhhheeccCcCceeeee-------ccHHHHhhhhhhcc----ccchhccchHHHhhhHHHHHHHhccCc
Confidence 778899999999988665432 11223567777777 445666788888888999999887764
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.48 E-value=8.9e-07 Score=88.46 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=40.9
Q ss_pred cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCC
Q 038350 304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP 381 (472)
Q Consensus 304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~ 381 (472)
++.+.+|+.+....+.++. .| .+++.|..|+.|.++- +-...++.-+.-.|.|+.|++..++...+|
T Consensus 312 IGKL~~Levf~aanN~LEl------VP-EglcRC~kL~kL~L~~----NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLEL------VP-EGLCRCVKLQKLKLDH----NRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhhhhhhHHHHhhcccccc------Cc-hhhhhhHHHHHhcccc----cceeechhhhhhcCCcceeeccCCcCccCC
Confidence 3444455555555555443 34 6677788888888743 223355566666788888888777654443
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=3.5e-05 Score=74.26 Aligned_cols=101 Identities=23% Similarity=0.154 Sum_probs=72.5
Q ss_pred ceEEEEEEeeeeecC-CC---CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEE
Q 038350 167 MCIRVLNINSCGLGL-CN---FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKL 241 (472)
Q Consensus 167 ~~L~~L~L~~~~l~~-~~---~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L 241 (472)
++|+.|+|+.+.+.. .+ -..+++|++|.|..|.++..++..++..||.|+.|.+.+...+..-.. ......|++|
T Consensus 172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred ccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 388888888887652 11 257899999999999999999999999999999999998753221111 0112388889
Q ss_pred EEeeccC---CceeEEEeCCCeeEEEEee
Q 038350 242 IVRHCQS---LSLGIELWLPRLQYFEYAG 267 (472)
Q Consensus 242 ~l~~c~~---~~~~~~i~~p~L~~L~l~~ 267 (472)
++++..+ ......-..|.|+.|.++.
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred cccCCcccccccccccccccchhhhhccc
Confidence 9988764 2223445677777777654
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.38 E-value=0.00041 Score=74.13 Aligned_cols=143 Identities=20% Similarity=0.128 Sum_probs=82.6
Q ss_pred cccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR 234 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~ 234 (472)
...+|..+. . +|+.|.+.++.+..-. ...++|++|+|+++.++ .+.. ..+.|+.|++.++. +..+. ..
T Consensus 213 LtsLP~~l~--~-~L~~L~L~~N~Lt~LP-~lp~~Lk~LdLs~N~Lt--sLP~---lp~sL~~L~Ls~N~-L~~Lp--~l 280 (788)
T PRK15387 213 LTTLPDCLP--A-HITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNP-LTHLP--AL 280 (788)
T ss_pred CCcCCcchh--c-CCCEEEccCCcCCCCC-CCCCCCcEEEecCCccC--cccC---cccccceeeccCCc-hhhhh--hc
Confidence 345776553 3 7888999888776311 23588999999988776 2222 24788999888764 33322 11
Q ss_pred CCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecC-CCceeEEEEEEeecccccCchhhHHhhcccCCCCcEE
Q 038350 235 TLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRG-MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARIL 313 (472)
Q Consensus 235 ~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L 313 (472)
.++|+.|.++++.. ..+....|+|+.|++++.... .+.. .++|..+.+..+. +..+.....+|+.|
T Consensus 281 p~~L~~L~Ls~N~L--t~LP~~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~----------L~~LP~lp~~Lq~L 347 (788)
T PRK15387 281 PSGLCKLWIFGNQL--TSLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQ----------LTSLPTLPSGLQEL 347 (788)
T ss_pred hhhcCEEECcCCcc--ccccccccccceeECCCCccc-cCCCCcccccccccccCc----------cccccccccccceE
Confidence 23788888888753 333334578888888764211 1111 1235544443211 11111122478888
Q ss_pred EEecccccc
Q 038350 314 QVSTSALKI 322 (472)
Q Consensus 314 ~l~~~~~~~ 322 (472)
+++++.+..
T Consensus 348 dLS~N~Ls~ 356 (788)
T PRK15387 348 SVSDNQLAS 356 (788)
T ss_pred ecCCCccCC
Confidence 888776553
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.21 E-value=0.0008 Score=71.93 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=21.8
Q ss_pred eEEEEEEeeeeecCCCCCCcccccEEEeeeEEeC
Q 038350 168 CIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~ 201 (472)
+|++|+|+++.+..-+ ...++|++|+|.++.+.
T Consensus 243 ~Lk~LdLs~N~LtsLP-~lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 243 ELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLT 275 (788)
T ss_pred CCcEEEecCCccCccc-CcccccceeeccCCchh
Confidence 8999999988775211 12356777777666554
No 25
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=2.3e-05 Score=80.58 Aligned_cols=86 Identities=27% Similarity=0.369 Sum_probs=60.4
Q ss_pred ccccCCceEEEEEEeee-eec---C----CCCCCcccccEEEeeeEE-eChHHHHHHHhcCCCcceEeecccCCceeE--
Q 038350 161 FFYEQGMCIRVLNINSC-GLG---L----CNFVNFIQLTSLALTRVR-LSWAAMENIAHNCPFLETLSLVECYRIFKV-- 229 (472)
Q Consensus 161 ~~~~~~~~L~~L~L~~~-~l~---~----~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l-- 229 (472)
....|+ .|+.|+++++ ... + .....+++|+.|++.++. ++|.++..+...||+||.|.+.+|..++..
T Consensus 209 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 209 LALKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHhhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 344566 8888888873 211 1 112567888888888876 778888888888999999888888764432
Q ss_pred -EEeeCCCCeeEEEEeecc
Q 038350 230 -EITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 230 -~i~~~~~~L~~L~l~~c~ 247 (472)
.+...+++|++|++..|.
T Consensus 288 ~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHHHhcCcccEEeeecCc
Confidence 334445678888888876
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.18 E-value=0.00022 Score=62.15 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=25.1
Q ss_pred cCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 306 PFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 306 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
.+++|++|.++.+.+..+.. - ..+..+++|+.|++..+--.....-=..++..+|+|+.|+-....
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~----l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNE----L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS---SCCC----C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCCcCCChHH----h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 34555555555554433221 0 123345555555554321111111334467889999999766553
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.18 E-value=0.0001 Score=69.24 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=47.1
Q ss_pred CCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEeee-
Q 038350 338 WQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFT- 415 (472)
Q Consensus 338 ~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~- 415 (472)
+.|+.+.+..+- .......+..-+.+||+|+.|+|+.+.-.... +.+--...+.+++|+++.+..+.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-----------s~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-----------SVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-----------HHHHHHHhcccchheeeccccccc
Confidence 445555544321 11223355555666777777776665311000 00000011133566666665542
Q ss_pred cChhhHHHHHHHHhcCccceEEEEeecccc
Q 038350 416 GKICEIDLVKFLLRNSRSIKELNIKQLIRA 445 (472)
Q Consensus 416 g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~ 445 (472)
-+.+-..+++.+-+.++.|+.+.+.+....
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 234555666666666677776666555443
No 28
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00029 Score=64.90 Aligned_cols=239 Identities=18% Similarity=0.188 Sum_probs=133.4
Q ss_pred eEEEEEEeeeeecCCC----C-CCcccccEEEeeeEEeC-hHHHHHHHhcCCCcceEeecccCCcee-EE-EeeCCCCee
Q 038350 168 CIRVLNINSCGLGLCN----F-VNFIQLTSLALTRVRLS-WAAMENIAHNCPFLETLSLVECYRIFK-VE-ITLRTLGLR 239 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~~----~-~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~~~~-l~-i~~~~~~L~ 239 (472)
-++-|.+.+|.++..+ + ..+..++.|+|.++.+. ...+.+++.+.|.|+.|+|+ |..+.. +. .+.+..+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceE
Confidence 4556667777776433 2 56788999999999998 58899999999999999998 443432 22 234556999
Q ss_pred EEEEeeccC---CceeEEEeCCCeeEEEEeeeec-eEe-----ecC-CCceeEEEEEEeecccccCchhhHHhhcccCCC
Q 038350 240 KLIVRHCQS---LSLGIELWLPRLQYFEYAGKMV-PFD-----MRG-MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSD 309 (472)
Q Consensus 240 ~L~l~~c~~---~~~~~~i~~p~L~~L~l~~~~~-~~~-----~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~ 309 (472)
.|.+.+... ...+..-..|.++.|.++.... .+- ... -+.+..+...-|.... -....++..-+|+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~----w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL----WLNKNKLSRIFPN 200 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH----HHHHHhHHhhccc
Confidence 999887653 2334444566666665544211 000 000 0112222111111000 0134566778899
Q ss_pred CcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCC
Q 038350 310 ARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFP 389 (472)
Q Consensus 310 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~ 389 (472)
+..+.++.+.++.... . .+..+++.+--|.+..+ +..+++++- -|...|.|..|.+..++...- -.|+
T Consensus 201 v~sv~v~e~PlK~~s~-e----k~se~~p~~~~LnL~~~-~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~-----l~~~ 268 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESS-E----KGSEPFPSLSCLNLGAN-NIDSWASVD-ALNGFPQLVDLRVSENPLSDP-----LRGG 268 (418)
T ss_pred chheeeecCcccchhh-c----ccCCCCCcchhhhhccc-ccccHHHHH-HHcCCchhheeeccCCccccc-----ccCC
Confidence 9999999887775442 1 12223333344444322 112233333 367899999999988752200 0010
Q ss_pred CCccccccccc--ccccCccEEEEEee---ecChhhHHHHHHHHh
Q 038350 390 LSRGEIWTTNG--SILDHLECVQFEGF---TGKICEIDLVKFLLR 429 (472)
Q Consensus 390 ~~~~~~w~~~~--~~~~~L~~v~i~~f---~g~~~e~~~~~~ll~ 429 (472)
+ .... .++++++++.=... .-.+.|..|++|.+.
T Consensus 269 ----e--rr~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 269 ----E--RRFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred ----c--ceEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 0 0111 14455554432212 234577889998876
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00016 Score=76.61 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=57.4
Q ss_pred ceEEEEEEeeeeecCCC-----CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEE
Q 038350 167 MCIRVLNINSCGLGLCN-----FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL 241 (472)
Q Consensus 167 ~~L~~L~L~~~~l~~~~-----~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L 241 (472)
.+|++|+++|...-..+ ..-||+|++|.+.+..+..+++..+..++|+|..|+++++. +.++..-+.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 37999999886332222 25699999999999999878899999999999999999864 4444333334455555
Q ss_pred EEeec
Q 038350 242 IVRHC 246 (472)
Q Consensus 242 ~l~~c 246 (472)
.+.+-
T Consensus 201 ~mrnL 205 (699)
T KOG3665|consen 201 SMRNL 205 (699)
T ss_pred hccCC
Confidence 55443
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.01 E-value=0.00064 Score=72.86 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=57.9
Q ss_pred cccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR 234 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~ 234 (472)
...+|..+ .. +|+.|+|+++.+..-...-+++|++|+|.++.++ .+..-+ .+.|+.|+|.+|. +..+....
T Consensus 190 LtsLP~~I--p~-~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L~Ls~N~-L~~LP~~l- 260 (754)
T PRK15370 190 LTTIPACI--PE-QITTLILDNNELKSLPENLQGNIKTLYANSNQLT--SIPATL--PDTIQEMELSINR-ITELPERL- 260 (754)
T ss_pred cCcCCccc--cc-CCcEEEecCCCCCcCChhhccCCCEEECCCCccc--cCChhh--hccccEEECcCCc-cCcCChhH-
Confidence 33456543 23 7888888888766211122358888888888766 222111 2478888888775 22221111
Q ss_pred CCCeeEEEEeeccCCceeEEEe-CCCeeEEEEeee
Q 038350 235 TLGLRKLIVRHCQSLSLGIELW-LPRLQYFEYAGK 268 (472)
Q Consensus 235 ~~~L~~L~l~~c~~~~~~~~i~-~p~L~~L~l~~~ 268 (472)
..+|+.|.++++.. ..+.-. .++|+.|.+++.
T Consensus 261 ~s~L~~L~Ls~N~L--~~LP~~l~~sL~~L~Ls~N 293 (754)
T PRK15370 261 PSALQSLDLFHNKI--SCLPENLPEELRYLSVYDN 293 (754)
T ss_pred hCCCCEEECcCCcc--CccccccCCCCcEEECCCC
Confidence 13678888776642 222211 246777777664
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.00 E-value=0.00018 Score=66.26 Aligned_cols=243 Identities=15% Similarity=0.153 Sum_probs=139.4
Q ss_pred CCcccCCcccccCCceEEEEEEeeee-------ecC----CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeec
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCG-------LGL----CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLV 221 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~-------l~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~ 221 (472)
.+.+.+-..+--|. .|++|.+++.. +.+ -.+.-|++|+++.++.|.-. .+..+...=|.|+++.++
T Consensus 169 ~~k~d~~hildf~~-~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~--~i~~~~~~kptl~t~~v~ 245 (490)
T KOG1259|consen 169 GGKYDFSHVLDFCT-QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE--NIVDIELLKPTLQTICVH 245 (490)
T ss_pred CCccchHHHHHhhh-heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh--heeceeecCchhheeeee
Confidence 44555555443355 79999998642 111 22356889999988877543 555666678999999988
Q ss_pred ccCCcee-E--E---E-----e------e-------CCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeec--eEee
Q 038350 222 ECYRIFK-V--E---I-----T------L-------RTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMV--PFDM 274 (472)
Q Consensus 222 ~c~~~~~-l--~---i-----~------~-------~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~--~~~~ 274 (472)
+...-.. . . + . + .-..|.++++++... ....-.--+|+++.|.++.... .-.+
T Consensus 246 ~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL 325 (490)
T KOG1259|consen 246 NTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL 325 (490)
T ss_pred cccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhh
Confidence 6521100 0 0 0 0 0 012455555555431 1111223477888888765322 1135
Q ss_pred cCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhH
Q 038350 275 RGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFEL 354 (472)
Q Consensus 275 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 354 (472)
..+++|+.+++++..-. .+..+-..+.|+++|.+.++.++.+ .++.++.+|..|++..+. ....
T Consensus 326 a~L~~L~~LDLS~N~Ls-------~~~Gwh~KLGNIKtL~La~N~iE~L--------SGL~KLYSLvnLDl~~N~-Ie~l 389 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLA-------ECVGWHLKLGNIKTLKLAQNKIETL--------SGLRKLYSLVNLDLSSNQ-IEEL 389 (490)
T ss_pred hhcccceEeecccchhH-------hhhhhHhhhcCEeeeehhhhhHhhh--------hhhHhhhhheeccccccc-hhhH
Confidence 66788888887754321 2334445677889999988877654 345567778888875431 1112
Q ss_pred HHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccc-cccCccEEEEEeeecChhhHHHHHHH
Q 038350 355 AAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGS-ILDHLECVQFEGFTGKICEIDLVKFL 427 (472)
Q Consensus 355 ~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~L~~v~i~~f~g~~~e~~~~~~l 427 (472)
.-..-+++.|.||.|.+..++....+||. ..... .-.+=-++.+.|-.++..|++-+..+
T Consensus 390 -deV~~IG~LPCLE~l~L~~NPl~~~vdYR------------TKVLa~FGERaSE~~LD~~~~~~~ELDTV~Vl 450 (490)
T KOG1259|consen 390 -DEVNHIGNLPCLETLRLTGNPLAGSVDYR------------TKVLARFGERASEISLDNEPGNQQELDTVLVL 450 (490)
T ss_pred -HHhcccccccHHHHHhhcCCCccccchHH------------HHHHHHHhhhhhheecCCCCcchhhhhHHHHH
Confidence 22234678999999999888655444321 11111 11233455566667777777766644
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.91 E-value=0.00057 Score=73.21 Aligned_cols=84 Identities=21% Similarity=0.142 Sum_probs=42.9
Q ss_pred cccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR 234 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~ 234 (472)
...+|..++ . +|++|++++|.+..-...-.++|+.|+|+++.+. .+..-+ .+.|+.|++.++ .+..+.-. .
T Consensus 211 LtsLP~~l~--~-nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~--~LP~~l--~s~L~~L~Ls~N-~L~~LP~~-l 281 (754)
T PRK15370 211 LKSLPENLQ--G-NIKTLYANSNQLTSIPATLPDTIQEMELSINRIT--ELPERL--PSALQSLDLFHN-KISCLPEN-L 281 (754)
T ss_pred CCcCChhhc--c-CCCEEECCCCccccCChhhhccccEEECcCCccC--cCChhH--hCCCCEEECcCC-ccCccccc-c
Confidence 335665543 3 6778877777665211112246777777777655 111111 246777777643 33332211 1
Q ss_pred CCCeeEEEEeecc
Q 038350 235 TLGLRKLIVRHCQ 247 (472)
Q Consensus 235 ~~~L~~L~l~~c~ 247 (472)
.++|+.|.+++|.
T Consensus 282 ~~sL~~L~Ls~N~ 294 (754)
T PRK15370 282 PEELRYLSVYDNS 294 (754)
T ss_pred CCCCcEEECCCCc
Confidence 1366666666664
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.89 E-value=0.0003 Score=49.85 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=38.2
Q ss_pred eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
+|++|.+++|.+. +..|.++++|++|+++++.++.- -...+.++|.|+.|++.+|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 6778888877554 34567888888888887766510 11236778888888887763
No 34
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.88 E-value=5.2e-05 Score=77.96 Aligned_cols=185 Identities=19% Similarity=0.226 Sum_probs=111.6
Q ss_pred ccccCCceEEEEEEeeee-ecCCCC----CCcccccEEEeeeEE-eChHHHHHHHhcCCCcceEeecccCCceeE---EE
Q 038350 161 FFYEQGMCIRVLNINSCG-LGLCNF----VNFIQLTSLALTRVR-LSWAAMENIAHNCPFLETLSLVECYRIFKV---EI 231 (472)
Q Consensus 161 ~~~~~~~~L~~L~L~~~~-l~~~~~----~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i 231 (472)
....|. .|+.|++.++. +...++ ..|++|++|.+.+|. +++.++..+...||.|++|++.+|..+++- .+
T Consensus 238 ~~~~~~-~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 238 LLSICR-KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hhhhcC-CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 344566 99999999987 554443 459999999988886 899999999999999999999999886432 11
Q ss_pred eeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeee-------eceEeecCCCceeEEEEEEeecccccCchhhHHhhc
Q 038350 232 TLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGK-------MVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLF 304 (472)
Q Consensus 232 ~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~-------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll 304 (472)
...+++|+.|.+..+. . +++++.+.+.+. ........++.++++.+.++. ..-. .....+
T Consensus 317 ~~~c~~l~~l~~~~~~-~-------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~----~~~~~l 383 (482)
T KOG1947|consen 317 LKNCPNLRELKLLSLN-G-------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL----GLELSL 383 (482)
T ss_pred HHhCcchhhhhhhhcC-C-------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc----chHHHh
Confidence 2235577776665554 1 555666655431 123445667777777776554 1111 124556
Q ss_pred ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
.++++|+ ..+.... ..+.+++.|.+..+.... ...+...-..|.+++.+.+.++.
T Consensus 384 ~gc~~l~-~~l~~~~---------------~~~~~l~~L~l~~~~~~t-~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 384 RGCPNLT-ESLELRL---------------CRSDSLRVLNLSDCRLVT-DKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cCCcccc-hHHHHHh---------------ccCCccceEecccCcccc-ccchHHHhhhhhccccCCccCcc
Confidence 6666662 2221110 112225666665442211 11333332337777777777664
No 35
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.67 E-value=0.0025 Score=36.27 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.4
Q ss_pred cccEEEeeeEEeCh-HHHHHHHhcCC
Q 038350 189 QLTSLALTRVRLSW-AAMENIAHNCP 213 (472)
Q Consensus 189 ~L~~L~L~~~~~~~-~~l~~l~~~cp 213 (472)
+||+|+|.++.|.+ +.++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 58999999999984 58999999998
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.66 E-value=9.7e-05 Score=77.57 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=50.6
Q ss_pred hhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350 298 DDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAI 377 (472)
Q Consensus 298 ~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~ 377 (472)
+.+...+.++.+|+.|+++.+.+..++. ..+.++..|++|.|+ ++....++.=+..|+.|++|.-..+..
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpa------s~~~kle~LeeL~LS----GNkL~~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPA------SKLRKLEELEELNLS----GNKLTTLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCH------HHHhchHHhHHHhcc----cchhhhhhHHHHhhhhhHHHhhcCCce
Confidence 3566778888899999998887665543 334566777777774 444556666667778888887776655
Q ss_pred cCCC
Q 038350 378 MHTP 381 (472)
Q Consensus 378 ~~~~ 381 (472)
..+|
T Consensus 443 ~~fP 446 (1081)
T KOG0618|consen 443 LSFP 446 (1081)
T ss_pred eech
Confidence 4444
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.61 E-value=0.003 Score=55.01 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=47.0
Q ss_pred hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHH-HHHhcCCCcceEEEEeCcccCC
Q 038350 302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAII-CLLISSPNITTLAISTGAIMHT 380 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~-~ll~~~p~L~~L~i~~~~~~~~ 380 (472)
.+-..+.+++.|+++.+.+..+ .+++.+.+|+.|.++.+ ....+. .+.+++|+|+.|.+..+.....
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l--------~~l~~L~~L~~L~L~~N----~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKL--------EGLPGLPRLKTLDLSNN----RISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp S--TT-TT--EEE-TTS--S----------TT----TT--EEE--SS-------S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred chhhhhcCCCEEECCCCCCccc--------cCccChhhhhhcccCCC----CCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 3334578899999999877643 34566888999998643 233342 3446799999999987743222
Q ss_pred CCCCCCCCCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350 381 PDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK 440 (472)
Q Consensus 381 ~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~ 440 (472)
.+ ......+++|+.|.+.|=.-+ ..-..=.|++...|+|+.++-.
T Consensus 104 ~~--------------l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 104 NE--------------LEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CC--------------CGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred HH--------------hHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence 10 122226688888888762212 2224455777888999976544
No 38
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.54 E-value=0.00031 Score=67.27 Aligned_cols=227 Identities=17% Similarity=0.173 Sum_probs=121.8
Q ss_pred HHHHHHCCCcEEE-EEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEe
Q 038350 124 IEIVLEKSVQELS-LDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRL 200 (472)
Q Consensus 124 l~~~~~~~l~~L~-l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~ 200 (472)
+.+...+++.++- +++.+ +...+.|..+.--+ +|++|+++++.+. |..++++ +|+.|.+.++-+
T Consensus 243 lpae~~~~L~~l~vLDLRd-----------Nklke~Pde~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRD-----------NKLKEVPDEICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hHHHHhcccccceeeeccc-----------cccccCchHHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 4555566665554 55543 56677888775556 8999999998776 6677888 899999988865
Q ss_pred ChHHHHHHHhcCCCcc---eEee-cccCCceeE-----------EE----eeCCCCeeEEEEeeccC---------C---
Q 038350 201 SWAAMENIAHNCPFLE---TLSL-VECYRIFKV-----------EI----TLRTLGLRKLIVRHCQS---------L--- 249 (472)
Q Consensus 201 ~~~~l~~l~~~cp~Le---~L~l-~~c~~~~~l-----------~i----~~~~~~L~~L~l~~c~~---------~--- 249 (472)
. .+..-+-+|+.=+ +|+= .-|.++..- .. .....+.|.|.++.-.. .
T Consensus 310 r--TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~ 387 (565)
T KOG0472|consen 310 R--TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKS 387 (565)
T ss_pred H--HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhh
Confidence 4 4444444454422 2211 012121100 00 00022555565554321 0
Q ss_pred --ceeEEEeCCCeeEEE--------------Eee---eeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCC
Q 038350 250 --SLGIELWLPRLQYFE--------------YAG---KMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDA 310 (472)
Q Consensus 250 --~~~~~i~~p~L~~L~--------------l~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L 310 (472)
...+..+--+|.++= ++. .+.+..+..+++|+-++++...-. .++.-+.++..|
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-------~LP~e~~~lv~L 460 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-------DLPEEMGSLVRL 460 (565)
T ss_pred cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-------hcchhhhhhhhh
Confidence 011111111111110 011 111223445666766666533211 233445566667
Q ss_pred cEEEEecccccccccc-----------------cccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEE
Q 038350 311 RILQVSTSALKIFPTE-----------------CLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAIS 373 (472)
Q Consensus 311 ~~L~l~~~~~~~~~~~-----------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~ 373 (472)
++|+++.+.++.++.. +..+..++..+.+|+.|++ ..++...++.++++|.+|++|.|+
T Consensus 461 q~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL----~nNdlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 461 QTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL----QNNDLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred heecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc----CCCchhhCChhhccccceeEEEec
Confidence 8888876654433220 1111122445666777776 456788999999999999999999
Q ss_pred eCc
Q 038350 374 TGA 376 (472)
Q Consensus 374 ~~~ 376 (472)
+.+
T Consensus 537 gNp 539 (565)
T KOG0472|consen 537 GNP 539 (565)
T ss_pred CCc
Confidence 985
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.47 E-value=0.0017 Score=69.02 Aligned_cols=119 Identities=16% Similarity=0.248 Sum_probs=66.5
Q ss_pred hHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEe-cccCchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350 299 DIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLN-TGLERFELAAIICLLISSPNITTLAISTGAI 377 (472)
Q Consensus 299 ~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~-~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~ 377 (472)
.+..+..++|+|..|+|++..+..++ +...+.||+.|.+. ..+.. ...+..+ -+..+|+.|+|+....
T Consensus 164 dF~~lc~sFpNL~sLDIS~TnI~nl~--------GIS~LknLq~L~mrnLe~e~--~~~l~~L-F~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 164 DFSQLCASFPNLRSLDISGTNISNLS--------GISRLKNLQVLSMRNLEFES--YQDLIDL-FNLKKLRVLDISRDKN 232 (699)
T ss_pred hHHHHhhccCccceeecCCCCccCcH--------HHhccccHHHHhccCCCCCc--hhhHHHH-hcccCCCeeecccccc
Confidence 46778888888888888887665432 23445666666654 22222 2233333 2378888888887742
Q ss_pred cCCCCCCCCCCCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350 378 MHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK 440 (472)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~ 440 (472)
...+ . -...|-+... .+++|+.+ .+.|++-.-+++..++..=++|+++...
T Consensus 233 ~~~~----~----ii~qYlec~~-~LpeLrfL---DcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 233 NDDT----K----IIEQYLECGM-VLPELRFL---DCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ccch----H----HHHHHHHhcc-cCccccEE---ecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 1110 0 0001111111 34444444 4446666667777788777777777643
No 40
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.13 E-value=6.5e-05 Score=63.49 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=50.5
Q ss_pred cccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCee
Q 038350 162 FYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR 239 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~ 239 (472)
+|... .++.|.|+++.+. |+..+.+.+|+.|++.++++. .+..-+++.|.|+.|++....-...-+-.+..|.|+
T Consensus 29 Lf~~s-~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMS-NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccchh-hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 44444 7777888877665 677788888888888887775 455557778888888776432111111123344555
Q ss_pred EEEEeec
Q 038350 240 KLIVRHC 246 (472)
Q Consensus 240 ~L~l~~c 246 (472)
.|++...
T Consensus 106 vldltyn 112 (264)
T KOG0617|consen 106 VLDLTYN 112 (264)
T ss_pred hhhcccc
Confidence 5555444
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.13 E-value=0.0035 Score=44.24 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEe
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRL 200 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~ 200 (472)
+....+|...|...++|++|+++++.+. +..|.++++|++|+++++.+
T Consensus 11 n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 11 NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4455677766654449999999998665 56789999999999987653
No 42
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.05 E-value=0.0005 Score=72.45 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=32.9
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeC
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~ 201 (472)
+.....|.....-. +|++|.|.++.+. |.++..+.+|..|+++.+.|.
T Consensus 78 n~i~~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 78 NYIRSVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred hhHhhCchhhhhhh-cchhheeccchhhcCchhHHhhhcccccccchhccC
Confidence 34455665544445 7888888877554 556778888888888877665
No 43
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.64 E-value=0.00015 Score=61.38 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=92.0
Q ss_pred CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEEEEeeccCCceeEEEeCCCe
Q 038350 182 CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKLIVRHCQSLSLGIELWLPRL 260 (472)
Q Consensus 182 ~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~l~~c~~~~~~~~i~~p~L 260 (472)
+++.++.+.+.|.|+++.++ .+..-++...+||.|++.+.. ++.+.. -+.+++|+.|.++-...
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl------------ 91 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL------------ 91 (264)
T ss_pred ccccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh------------
Confidence 45577788899999888665 122224445688888887643 333322 12345666665443321
Q ss_pred eEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCc
Q 038350 261 QYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQL 340 (472)
Q Consensus 261 ~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 340 (472)
...+--++..|.|+.+++.+..-... .++.-+-.+..|.-|.++.+.++.+ | ....++.+|
T Consensus 92 -------~~lprgfgs~p~levldltynnl~e~-----~lpgnff~m~tlralyl~dndfe~l------p-~dvg~lt~l 152 (264)
T KOG0617|consen 92 -------NILPRGFGSFPALEVLDLTYNNLNEN-----SLPGNFFYMTTLRALYLGDNDFEIL------P-PDVGKLTNL 152 (264)
T ss_pred -------hcCccccCCCchhhhhhccccccccc-----cCCcchhHHHHHHHHHhcCCCcccC------C-hhhhhhcce
Confidence 01122355666666666665432211 1111222334455566776665543 3 334556677
Q ss_pred eeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCC
Q 038350 341 EHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP 381 (472)
Q Consensus 341 ~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~ 381 (472)
+.|.+. .++...++.-++....|+.|+|++..-...|
T Consensus 153 qil~lr----dndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 153 QILSLR----DNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred eEEeec----cCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 777763 3456677777888899999999998644333
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.16 E-value=0.0038 Score=59.90 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=46.7
Q ss_pred hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHH-HHhcCCCcceEEEEeCccc
Q 038350 302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIIC-LLISSPNITTLAISTGAIM 378 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~-ll~~~p~L~~L~i~~~~~~ 378 (472)
.-+..+++|+.|.++++.+..+. + ..+....+++.|.+.. +....+.. +++...+|+.|++.++...
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~-----~-~aFe~~a~l~eL~L~~----N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIE-----D-GAFEGAAELQELYLTR----NKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred HHHhhcccceEeccCCCccchhh-----h-hhhcchhhhhhhhcCc----chHHHHHHHhhhccccceeeeecCCeeE
Confidence 44788999999999988765432 2 3444556677777743 33444443 6899999999999888643
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.08 E-value=0.013 Score=38.23 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=21.8
Q ss_pred ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 188 IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 188 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
++|++|+|.++.++ .+...++.||+|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCC
Confidence 35677777777666 344446677777777777764
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.07 E-value=0.003 Score=60.58 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeee-EEeC
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTR-VRLS 201 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~-~~~~ 201 (472)
+....+|...|+.-.+|++|+|+++.+. |.+|.++++|.+|.+.+ +.|+
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 6677888888877668999999988664 67788999988888766 6665
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.70 E-value=0.0026 Score=65.61 Aligned_cols=199 Identities=17% Similarity=0.149 Sum_probs=93.7
Q ss_pred cCCCccEEEEEEEeCCCcchHhHHHHHHH-HHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEee
Q 038350 98 ASEFLTKFSFRLYYSSNIYRQNIDKWIEI-VLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINS 176 (472)
Q Consensus 98 ~~~~l~~l~l~~~~~~~~~~~~i~~wl~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~ 176 (472)
.|+++..|+...+.... ...+...-.. -+-..++.+.+.-. + +..++. |..+|.+. +|++|.|.+
T Consensus 53 ~g~~~~~f~a~~s~~ad--s~vl~qLq~i~d~lqkt~~lkl~~~-p---------a~~pt~-pi~ifpF~-sLr~LElrg 118 (1096)
T KOG1859|consen 53 SGAPVDYFRAYVSDNAD--SRVLEQLQRILDFLQKTKVLKLLPS-P---------ARDPTE-PISIFPFR-SLRVLELRG 118 (1096)
T ss_pred CCCCCceeEEecCCccc--chHHHHHHHHHHHHhhheeeeeccc-C---------CCCCCC-Cceecccc-ceeeEEecC
Confidence 46789999988775432 2222222111 11234444554211 1 133343 88889999 999999999
Q ss_pred eeecC-CCCCCc---------------------------------ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecc
Q 038350 177 CGLGL-CNFVNF---------------------------------IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVE 222 (472)
Q Consensus 177 ~~l~~-~~~~~~---------------------------------~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 222 (472)
|.+.. .++..+ ..|.+.+++++.++ .+..-+.-.|.||.|+|+.
T Consensus 119 ~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLsh 196 (1096)
T KOG1859|consen 119 CDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--LMDESLQLLPALESLNLSH 196 (1096)
T ss_pred cchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccch
Confidence 86652 222111 12222233222222 1111112235566666664
Q ss_pred cCCceeEEEeeCCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhh
Q 038350 223 CYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDD 299 (472)
Q Consensus 223 c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 299 (472)
..- ..+.---.++.|++|+++.... ....+...+-+|+.|.+.+... . .-+.++.+|..+++++.....+ .
T Consensus 197 Nk~-~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~h-----s 270 (1096)
T KOG1859|consen 197 NKF-TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEH-----S 270 (1096)
T ss_pred hhh-hhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcc-----h
Confidence 321 1111101234777777765442 2233333333467777666432 1 1345556666666554322211 1
Q ss_pred HHhhcccCCCCcEEEEecc
Q 038350 300 IESLFNPFSDARILQVSTS 318 (472)
Q Consensus 300 ~~~ll~~l~~L~~L~l~~~ 318 (472)
-..++..+..|..|.|.++
T Consensus 271 eL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 271 ELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhHHHHHHHHHHHhhcCC
Confidence 2234445555556666554
No 48
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.35 E-value=3e-05 Score=73.99 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=34.6
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecc
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVE 222 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 222 (472)
+.-..+|..+..-. .++.|+.+++.+. |....+.++|++|+++++.+. .+..-+..|-.|++|+...
T Consensus 78 n~l~~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 78 NKLSQLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred chhhhCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhhhcccccee--ecCchHHHHhhhhhhhccc
Confidence 34455666555544 5566666655443 444456666666666655544 1111133445555555543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.15 E-value=0.012 Score=38.39 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=26.9
Q ss_pred eEEEEEEeeeeecC--CCCCCcccccEEEeeeEEeC
Q 038350 168 CIRVLNINSCGLGL--CNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 168 ~L~~L~L~~~~l~~--~~~~~~~~L~~L~L~~~~~~ 201 (472)
+|++|+++++.+.. +.+.+|++|++|+++++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 68899999988763 34889999999999998876
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.13 E-value=0.1 Score=45.85 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=24.8
Q ss_pred EEEEEEeeeeec-CCCCCCcccccEEEeeeEEeC--hHHHHHHHhcCCCcceEeeccc
Q 038350 169 IRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLS--WAAMENIAHNCPFLETLSLVEC 223 (472)
Q Consensus 169 L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c 223 (472)
...++|+.+.+. ...|..++.|.+|.|.+++|+ +..+.. ..|+|..|.+.+.
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNN 98 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCc
Confidence 334444444332 234455556666666655555 333322 2355555555543
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.12 E-value=0.012 Score=55.07 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=33.8
Q ss_pred CCCCCCCc----hHHHHHHHhcCChhhHhhhhhhccccc
Q 038350 5 TDPLSDFH----DDLIIVIITFLPFIDAYRLCMSKKKWY 39 (472)
Q Consensus 5 ~D~is~LP----d~iL~~Ils~L~~~d~~r~s~vSkrWr 39 (472)
.|.|+.|| |+|-..|||+|+..+++.+..|||+|+
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~ 110 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWK 110 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 58899999 999999999999999999999999998
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.10 E-value=0.007 Score=66.15 Aligned_cols=102 Identities=20% Similarity=0.094 Sum_probs=52.6
Q ss_pred cCCceEEEEEEeeee--ec--CCC-CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEe-eCCCC
Q 038350 164 EQGMCIRVLNINSCG--LG--LCN-FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEIT-LRTLG 237 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~--l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~-~~~~~ 237 (472)
.|+ .|+.|-+..+. +. +.+ |..+|.|+.|+|+++. ....+...++..-+|+.|++.++. +..+... ..+..
T Consensus 543 ~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKK 619 (889)
T ss_pred CCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHh
Confidence 344 57777666653 22 222 5677888888887642 112344445566677777777643 2222110 11225
Q ss_pred eeEEEEeeccC--CceeEEEeCCCeeEEEEeee
Q 038350 238 LRKLIVRHCQS--LSLGIELWLPRLQYFEYAGK 268 (472)
Q Consensus 238 L~~L~l~~c~~--~~~~~~i~~p~L~~L~l~~~ 268 (472)
|.+|++..... ....+....++|++|.+.+.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeecc
Confidence 55566555441 11222233567777776553
No 53
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.0091 Score=52.24 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=58.7
Q ss_pred cccCCcccccCCceEEEEEEeeeeecC---CCCCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLGL---CNFVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFKVE 230 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~ 230 (472)
-+.+|-.....- .++.++=+++.+-- ..+.+++.++.|.+.+| ++.|..++.+-...|+||+|+|++|+.++.--
T Consensus 90 ~~~lp~~~~~~~-~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 90 YFSLPGPNADNV-KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred eecCCCCCCCcc-eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 345554333333 56666666654432 23467788888888888 66788888877778999999999998776532
Q ss_pred Eee--CCCCeeEEEEeecc
Q 038350 231 ITL--RTLGLRKLIVRHCQ 247 (472)
Q Consensus 231 i~~--~~~~L~~L~l~~c~ 247 (472)
+.+ .+++|+.|.+.+-.
T Consensus 169 L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHHhhhhHHHHhcCch
Confidence 211 23466666655543
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.71 E-value=0.016 Score=52.79 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=56.9
Q ss_pred eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeC-hHHHHHHHhcCCCcceEeecccCC--ceeEEEeeCCCCeeEEEE
Q 038350 168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLS-WAAMENIAHNCPFLETLSLVECYR--IFKVEITLRTLGLRKLIV 243 (472)
Q Consensus 168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~c~~--~~~l~i~~~~~~L~~L~l 243 (472)
.|+.|++.++.+.+ ..+-.+|+|++|.++.+.+. ..++..++..||+|..|++++... +..+.-...+++|+.|.+
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 67777777887765 55677889999999988544 357788888999999999998642 111211122457777777
Q ss_pred eecc
Q 038350 244 RHCQ 247 (472)
Q Consensus 244 ~~c~ 247 (472)
.+|.
T Consensus 124 ~n~~ 127 (260)
T KOG2739|consen 124 FNCS 127 (260)
T ss_pred ccCC
Confidence 7776
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.23 E-value=0.054 Score=50.34 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCcceEeecccCCc-eeEEE-----e---eCCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEee
Q 038350 204 AMENIAHNCPFLETLSLVECYRI-FKVEI-----T---LRTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAG 267 (472)
Q Consensus 204 ~l~~l~~~cp~Le~L~l~~c~~~-~~l~i-----~---~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~ 267 (472)
++.+++..|-.|..|.+.+..+- +.-.| + +...+|+.+.++.|.. .+..++..-|.|+++....
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeec
Confidence 67888888889999988876432 11111 0 1134888899999874 4667778888888888754
No 56
>PLN03150 hypothetical protein; Provisional
Probab=93.15 E-value=0.058 Score=57.33 Aligned_cols=79 Identities=18% Similarity=0.077 Sum_probs=54.2
Q ss_pred eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEEEE
Q 038350 168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKLIV 243 (472)
Q Consensus 168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~l 243 (472)
.++.|+|.++.+. |..+..+++|+.|+|+++.+.+ .+...+..++.|+.|+|.++.-.+.+.- -+.+++|+.|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4778888887664 4556788999999998887763 3334467889999999988753332221 223457777777
Q ss_pred eecc
Q 038350 244 RHCQ 247 (472)
Q Consensus 244 ~~c~ 247 (472)
+++.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 7765
No 57
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.67 E-value=0.062 Score=52.37 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCCchHHHHHHHhcCCh-hhHhhhhhhccccc
Q 038350 8 LSDFHDDLIIVIITFLPF-IDAYRLCMSKKKWY 39 (472)
Q Consensus 8 is~LPd~iL~~Ils~L~~-~d~~r~s~vSkrWr 39 (472)
.++||+|+|..|..+|+. -|.+|.+.||+.||
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr 36 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWR 36 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHH
Confidence 688999999999999965 99999999999999
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=0.05 Score=50.60 Aligned_cols=144 Identities=16% Similarity=0.142 Sum_probs=90.4
Q ss_pred ceEEEEEEeeeeecCC--CC-CCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC----CceeEEEeeCCCCee
Q 038350 167 MCIRVLNINSCGLGLC--NF-VNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY----RIFKVEITLRTLGLR 239 (472)
Q Consensus 167 ~~L~~L~L~~~~l~~~--~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~----~~~~l~i~~~~~~L~ 239 (472)
+.|+.|+|+.+.+.++ .. ....+|++|.|.+..+........++..|.+++|+++... +++.--+..-.+.++
T Consensus 97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~ 176 (418)
T KOG2982|consen 97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVL 176 (418)
T ss_pred ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhh
Confidence 3899999999888743 22 4667999999988888777888889999999999888641 111111111124788
Q ss_pred EEEEeeccC----CceeEEEeCCCeeEEEEeeeec-eE----eecCCCc-----eeEEEEEEeecccccCchhhHHhhcc
Q 038350 240 KLIVRHCQS----LSLGIELWLPRLQYFEYAGKMV-PF----DMRGMDD-----LEVVVLDYRLDTRYSYNGDDIESLFN 305 (472)
Q Consensus 240 ~L~l~~c~~----~~~~~~i~~p~L~~L~l~~~~~-~~----~~~~~~~-----L~~l~l~~~~~~~~~~~~~~~~~ll~ 305 (472)
.|+.-.|.. ....+.--.||+..+.+..+.. .. .....|. |....|+ ..+-..-+.
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id----------swasvD~Ln 246 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID----------SWASVDALN 246 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc----------cHHHHHHHc
Confidence 888888864 2333444578888887754321 11 1122222 3232222 224455677
Q ss_pred cCCCCcEEEEecccc
Q 038350 306 PFSDARILQVSTSAL 320 (472)
Q Consensus 306 ~l~~L~~L~l~~~~~ 320 (472)
+++.+..|.+..+.+
T Consensus 247 ~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPL 261 (418)
T ss_pred CCchhheeeccCCcc
Confidence 888888888876643
No 59
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.15 E-value=0.055 Score=59.34 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=78.5
Q ss_pred eEEEEEEeeeeec-CCCCCCcccccEEEeeeEE--eChHHHHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEEEE
Q 038350 168 CIRVLNINSCGLG-LCNFVNFIQLTSLALTRVR--LSWAAMENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKLIV 243 (472)
Q Consensus 168 ~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~l 243 (472)
..+...+.++.+. -..-..++.|++|-+.++. +. ..-...+.+.|.|..|++++|..++.+.- -+.+-+||.|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 5666666666543 2334567789999887764 22 22233466789999999999877665422 223458888888
Q ss_pred eeccCCceeEEEeCC---CeeEEEEeeee--c--eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEe
Q 038350 244 RHCQSLSLGIELWLP---RLQYFEYAGKM--V--PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVS 316 (472)
Q Consensus 244 ~~c~~~~~~~~i~~p---~L~~L~l~~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~ 316 (472)
+.+. ...+..... +|.+|++.... . +-....+++|+.+.+....... +.....-+..+.+|+.|++.
T Consensus 603 ~~t~--I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~----~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 603 SDTG--ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN----DKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cCCC--ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc----chhhHHhhhcccchhhheee
Confidence 7775 233332222 35555544311 1 1122336667776665443110 11233334556666666663
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.69 E-value=0.18 Score=49.98 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=50.4
Q ss_pred eEEEEEEeee-eecC-CCCCCcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350 168 CIRVLNINSC-GLGL-CNFVNFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR 244 (472)
Q Consensus 168 ~L~~L~L~~~-~l~~-~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~ 244 (472)
+|++|.+++| .+.. ++ .-.++|++|.+.+| .+. .+ -+.|+.|.+.. .....+. .--++|++|.+.
T Consensus 73 sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L~~-n~~~~L~--~LPssLk~L~I~ 140 (426)
T PRK15386 73 ELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEIS-----GL---PESVRSLEIKG-SATDSIK--NVPNGLTSLSIN 140 (426)
T ss_pred CCcEEEccCCCCcccCCc-hhhhhhhheEccCccccc-----cc---ccccceEEeCC-CCCcccc--cCcchHhheecc
Confidence 6888888776 3321 11 11246788887776 332 11 14577777653 2222221 111377777765
Q ss_pred eccC-CceeEE-EeCCCeeEEEEeeeeceEeecCCC-ceeEEEEE
Q 038350 245 HCQS-LSLGIE-LWLPRLQYFEYAGKMVPFDMRGMD-DLEVVVLD 286 (472)
Q Consensus 245 ~c~~-~~~~~~-i~~p~L~~L~l~~~~~~~~~~~~~-~L~~l~l~ 286 (472)
++.. ....+. .--++|++|.+.++.....-..+| +|+.+.++
T Consensus 141 ~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls 185 (426)
T PRK15386 141 SYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLH 185 (426)
T ss_pred ccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEec
Confidence 4321 000011 112468888886643211112233 46666664
No 61
>PLN03150 hypothetical protein; Provisional
Probab=91.58 E-value=0.081 Score=56.26 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=53.2
Q ss_pred cCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 157 VLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
.+|..+.... +|++|+|+++.+. |..+..+++|+.|+|+++.+... +...+.++++|+.|+|.++.
T Consensus 433 ~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCc
Confidence 4666666667 9999999999775 45578999999999999988732 33447789999999999875
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.56 E-value=0.23 Score=49.14 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=25.2
Q ss_pred cccccEEEeeeEEeChHHHHHHHhcCC-CcceEeecccCCceeEEEeeCCCCeeEEEEeecc
Q 038350 187 FIQLTSLALTRVRLSWAAMENIAHNCP-FLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 187 ~~~L~~L~L~~~~~~~~~l~~l~~~cp-~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 247 (472)
++++++|++++|.++ .+. ..| +|+.|.+.+|..+..+.-.- .++|+.|.+.+|.
T Consensus 51 ~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs 105 (426)
T PRK15386 51 ARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCP 105 (426)
T ss_pred hcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcc
Confidence 455666666555433 111 122 36666666665543332100 1256666666553
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.48 E-value=0.38 Score=42.41 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=60.5
Q ss_pred hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHH--HhcCCCcceEEEEeCcccC
Q 038350 302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICL--LISSPNITTLAISTGAIMH 379 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l--l~~~p~L~~L~i~~~~~~~ 379 (472)
..+..+++|++|.+..+.+-.+. | .-...+++|+.|.+..+ ....+..+ +..||.|+.|++-+.+..+
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~-----p-~L~~~~p~l~~L~LtnN----si~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRID-----P-DLDTFLPNLKTLILTNN----SIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ccCCCccccceEEecCCcceeec-----c-chhhhccccceEEecCc----chhhhhhcchhccCCccceeeecCCchhc
Confidence 34667788999999887655332 2 22245678999998543 22233332 5789999999998886433
Q ss_pred CCCCCCCCCCCCcccccccccc-cccCccEEEEEeeecChhh
Q 038350 380 TPDFRPNYFPLSRGEIWTTNGS-ILDHLECVQFEGFTGKICE 420 (472)
Q Consensus 380 ~~~~~~~~~~~~~~~~w~~~~~-~~~~L~~v~i~~f~g~~~e 420 (472)
... | ..... .+++|+.+.+.+.+-.+-+
T Consensus 128 k~~------------Y-R~yvl~klp~l~~LDF~kVt~~ER~ 156 (233)
T KOG1644|consen 128 KKN------------Y-RLYVLYKLPSLRTLDFQKVTRKERE 156 (233)
T ss_pred ccC------------c-eeEEEEecCcceEeehhhhhHHHHH
Confidence 321 1 11122 6788888888887655443
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.41 E-value=0.078 Score=53.05 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=92.9
Q ss_pred eEEEEEEeeeeecC--CCCCCc-ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350 168 CIRVLNINSCGLGL--CNFVNF-IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR 244 (472)
Q Consensus 168 ~L~~L~L~~~~l~~--~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~ 244 (472)
.++.|.+.++.+.. +....+ ++|+.|++.++.+. .+..-+..+|+|+.|.+.++.-..-....+..+.|+.|.++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 68888888876652 223444 38999999888776 33334778999999999987632222221134588888888
Q ss_pred eccCCceeEEE--eCCC-eeEEEEeee-ec--eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecc
Q 038350 245 HCQSLSLGIEL--WLPR-LQYFEYAGK-MV--PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTS 318 (472)
Q Consensus 245 ~c~~~~~~~~i--~~p~-L~~L~l~~~-~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~ 318 (472)
+... ..+.. ..++ |++|.+.+. .. ...+.....+..+.+..... ......+..++++++|+++.+
T Consensus 195 ~N~i--~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-------~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 195 GNKI--SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-------EDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred CCcc--ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-------eeccchhccccccceeccccc
Confidence 8753 33322 2344 777777654 11 12233344443333211100 011345666777888888777
Q ss_pred cccccccccccccCCCcccCCceeEEEec
Q 038350 319 ALKIFPTECLLCGRQLFQFWQLEHLTLNT 347 (472)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 347 (472)
.+..++ .+....+++.|.++.
T Consensus 266 ~i~~i~--------~~~~~~~l~~L~~s~ 286 (394)
T COG4886 266 QISSIS--------SLGSLTNLRELDLSG 286 (394)
T ss_pred cccccc--------cccccCccCEEeccC
Confidence 554322 144566777777653
No 65
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.25 E-value=0.099 Score=48.83 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=30.3
Q ss_pred CCCCCCCchHHHHHHHhcC-----ChhhHhhhhhhccccc
Q 038350 5 TDPLSDFHDDLIIVIITFL-----PFIDAYRLCMSKKKWY 39 (472)
Q Consensus 5 ~D~is~LPd~iL~~Ils~L-----~~~d~~r~s~vSkrWr 39 (472)
.+-|+.||||||..||... +.++..++|+|||.|+
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~ 143 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFY 143 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHH
Confidence 3457899999999999764 5699999999999997
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.38 E-value=0.28 Score=45.21 Aligned_cols=177 Identities=13% Similarity=0.063 Sum_probs=90.0
Q ss_pred CCCcccccEEEeeeEEeC---hHHHHHHHhcCCCcceEeecccCCceeE---EEeeCCCCeeEEEEeeccCCceeEEEeC
Q 038350 184 FVNFIQLTSLALTRVRLS---WAAMENIAHNCPFLETLSLVECYRIFKV---EITLRTLGLRKLIVRHCQSLSLGIELWL 257 (472)
Q Consensus 184 ~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~~~~~~~i~~ 257 (472)
+..||.|++.+|+++.|. .+.+..++++-..|+.|.+.+|. ++.+ +|.. .|-+| ....-.-+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk---al~~l-------a~nKKaa~k 156 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK---ALFHL-------AYNKKAADK 156 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH---HHHHH-------HHHhhhccC
Confidence 467777788888777665 45677788888888888888763 2322 1110 11111 001112345
Q ss_pred CCeeEEEEeee------ece--EeecCCCceeEEEEEEeecccccCchhhH--HhhcccCCCCcEEEEeccccccccccc
Q 038350 258 PRLQYFEYAGK------MVP--FDMRGMDDLEVVVLDYRLDTRYSYNGDDI--ESLFNPFSDARILQVSTSALKIFPTEC 327 (472)
Q Consensus 258 p~L~~L~l~~~------~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~--~~ll~~l~~L~~L~l~~~~~~~~~~~~ 327 (472)
|.|+.+..... ... ..+..-..|..+.+.+..... .+-.. .--+.-+.+|+.|+|..+++.....
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp---egv~~L~~~gl~y~~~LevLDlqDNtft~~gS-- 231 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP---EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS-- 231 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc---chhHHHHHHHHHHhCcceeeeccccchhhhhH--
Confidence 66666654221 000 011112346666665432211 11111 1224457899999997776432110
Q ss_pred ccccCCCcccCCceeEEEecccCc-hhHHHHHHHHh--cCCCcceEEEEeCc
Q 038350 328 LLCGRQLFQFWQLEHLTLNTGLER-FELAAIICLLI--SSPNITTLAISTGA 376 (472)
Q Consensus 328 ~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~ll~--~~p~L~~L~i~~~~ 376 (472)
...+..++.-+.|+.|.+.-|+-. .....+..-+. ..|+|+.|..+-..
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 011123455566899998876532 22222222222 37888888776653
No 67
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.08 E-value=0.26 Score=27.88 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=11.6
Q ss_pred cccccEEEeeeE-EeChHHHHHH
Q 038350 187 FIQLTSLALTRV-RLSWAAMENI 208 (472)
Q Consensus 187 ~~~L~~L~L~~~-~~~~~~l~~l 208 (472)
|++|+.|+|.+| .++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 345555555555 3555555543
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.77 E-value=0.22 Score=28.19 Aligned_cols=17 Identities=41% Similarity=0.769 Sum_probs=14.4
Q ss_pred CCCcceEeecccCCcee
Q 038350 212 CPFLETLSLVECYRIFK 228 (472)
Q Consensus 212 cp~Le~L~l~~c~~~~~ 228 (472)
||.|+.|+|.+|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 78999999999987764
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.78 E-value=0.78 Score=40.48 Aligned_cols=111 Identities=11% Similarity=0.041 Sum_probs=68.5
Q ss_pred ccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCccccc-ccccc-cccCccEEEEEe
Q 038350 336 QFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIW-TTNGS-ILDHLECVQFEG 413 (472)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w-~~~~~-~~~~L~~v~i~~ 413 (472)
...+.+.=.|....+.....++. -|+.++.|+.|.+..+. .+.| | .+... ...+|+.|.|.|
T Consensus 97 ~~~~~~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck--~~dD-------------~~L~~l~~~~~~L~~L~lsg 160 (221)
T KOG3864|consen 97 NADNVKIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCK--YFDD-------------WCLERLGGLAPSLQDLDLSG 160 (221)
T ss_pred CCCcceEEEEecCCchHHHHHHH-HHhccchhhhheecccc--chhh-------------HHHHHhcccccchheeeccC
Confidence 34444444444322222233444 46889999999998884 2221 1 11111 567999999997
Q ss_pred ee-cChhhHHHHHHHHhcCccceEEEEeeccccCcchhhHHHHHHHHhhhccCCeEEee
Q 038350 414 FT-GKICEIDLVKFLLRNSRSIKELNIKQLIRATSSVTSEAFKEINQAVAASGGVVINW 471 (472)
Q Consensus 414 f~-g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~~~~~~~~~~l~~~~~as~~~~i~~ 471 (472)
+. -++..+..+. +.++|+++.|+........ ..-...++.|-|+|+|.+
T Consensus 161 C~rIT~~GL~~L~----~lknLr~L~l~~l~~v~~~-----e~~~~~Le~aLP~c~I~~ 210 (221)
T KOG3864|consen 161 CPRITDGGLACLL----KLKNLRRLHLYDLPYVANL-----ELVQRQLEEALPKCDIVG 210 (221)
T ss_pred CCeechhHHHHHH----HhhhhHHHHhcCchhhhch-----HHHHHHHHHhCcccceec
Confidence 64 3555554443 6799999999877765332 234556788999999875
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.36 E-value=0.38 Score=26.51 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=14.6
Q ss_pred cccccEEEeeeEEeChHHHHHH
Q 038350 187 FIQLTSLALTRVRLSWAAMENI 208 (472)
Q Consensus 187 ~~~L~~L~L~~~~~~~~~l~~l 208 (472)
+++|++|+|+++.++++++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4678888888888887777664
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.73 E-value=0.11 Score=47.45 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=38.7
Q ss_pred CeeEEEEeeccC----CceeEEEeCCCeeEEEEeeeece-Ee----ecCCCceeEEEEEEeecccccCchhhHHhhcccC
Q 038350 237 GLRKLIVRHCQS----LSLGIELWLPRLQYFEYAGKMVP-FD----MRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPF 307 (472)
Q Consensus 237 ~L~~L~l~~c~~----~~~~~~i~~p~L~~L~l~~~~~~-~~----~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l 307 (472)
+|+.|.++.... ++..+...+|+|+++.++|.... ++ +..+.+|..+++..+....-+ ..-.+.+.-+
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~---dyre~vf~ll 142 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD---DYREKVFLLL 142 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc---cHHHHHHHHh
Confidence 445554443311 34555566788888888875332 11 223344445555544332222 1333445555
Q ss_pred CCCcEEEEec
Q 038350 308 SDARILQVST 317 (472)
Q Consensus 308 ~~L~~L~l~~ 317 (472)
++|++|+-+.
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 6666665543
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=78.15 E-value=0.87 Score=47.27 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=34.6
Q ss_pred CCCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350 4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY 39 (472)
Q Consensus 4 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr 39 (472)
..|.|+.||-++..+||++|+.++.++.+.||+.|+
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~ 139 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWN 139 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhh
Confidence 478999999999999999999999999999999998
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=74.61 E-value=11 Score=35.14 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=37.7
Q ss_pred hcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEeeecChhh--HHHHHHHHhcCccceEEEE
Q 038350 362 ISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICE--IDLVKFLLRNSRSIKELNI 439 (472)
Q Consensus 362 ~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e--~~~~~~ll~~~~~L~~l~i 439 (472)
.+-|.|+......++-... +.++|..-...+..|++|+|..= |-..+ -.++-+=+..+.+|+.+.|
T Consensus 154 a~kp~Le~vicgrNRleng-----------s~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDl 221 (388)
T COG5238 154 ADKPKLEVVICGRNRLENG-----------SKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDL 221 (388)
T ss_pred ccCCCceEEEeccchhccC-----------cHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeec
Confidence 3577777776655532111 13455332225567888888532 22111 2344444667888888887
Q ss_pred eecc
Q 038350 440 KQLI 443 (472)
Q Consensus 440 ~~~~ 443 (472)
....
T Consensus 222 qDNt 225 (388)
T COG5238 222 QDNT 225 (388)
T ss_pred cccc
Confidence 6443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=73.42 E-value=2.1 Score=22.98 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=7.2
Q ss_pred EEEEEEeeeeec
Q 038350 169 IRVLNINSCGLG 180 (472)
Q Consensus 169 L~~L~L~~~~l~ 180 (472)
|++|+|++|.+.
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 566666666554
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=71.89 E-value=1.3 Score=44.68 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=59.8
Q ss_pred cCCceEEEEEEeeeeecC-CC-CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEE
Q 038350 164 EQGMCIRVLNINSCGLGL-CN-FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL 241 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~l~~-~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L 241 (472)
... +|+.|.+..+.+.. .. +..+++|++|+|+++.|+ .+.. +..++.|+.|++.++. +..+.-...+++|+.+
T Consensus 93 ~~~-~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~--~i~~-l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLK-SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT--KLEG-LSTLTLLKELNLSGNL-ISDISGLESLKSLKLL 167 (414)
T ss_pred ccc-ceeeeeccccchhhcccchhhhhcchheeccccccc--cccc-hhhccchhhheeccCc-chhccCCccchhhhcc
Confidence 345 88888888887763 44 577888999998888877 3333 4445668888888764 2222222224577777
Q ss_pred EEeeccC-CceeE-EEeCCCeeEEEEee
Q 038350 242 IVRHCQS-LSLGI-ELWLPRLQYFEYAG 267 (472)
Q Consensus 242 ~l~~c~~-~~~~~-~i~~p~L~~L~l~~ 267 (472)
.++++.. ..... ....++|+.+.+.+
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccC
Confidence 7777653 11110 13344555555544
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=71.60 E-value=0.97 Score=45.16 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=93.9
Q ss_pred CCcccCCcccccC-CceEEEEEEeeeeecC--CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350 153 NPQYVLPHFFYEQ-GMCIRVLNINSCGLGL--CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV 229 (472)
Q Consensus 153 ~~~~~lp~~~~~~-~~~L~~L~L~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l 229 (472)
.....+|...... . +|++|++.++.+.. .....+++|+.|++..+.+. .+.......+.|+.|.+.+.. +..+
T Consensus 126 n~i~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~ls~N~-i~~l 201 (394)
T COG4886 126 NNITDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNK-ISDL 201 (394)
T ss_pred cccccCccccccchh-hcccccccccchhhhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhheeccCCc-cccC
Confidence 3445556544332 2 79999999987764 46789999999999999886 555555578999999999864 2333
Q ss_pred EEe-eCCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeee-c--eEeecCCCceeEEEEEEeecccccCchhhHHhhc
Q 038350 230 EIT-LRTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKM-V--PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLF 304 (472)
Q Consensus 230 ~i~-~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~-~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll 304 (472)
... .....|++|.+.+... ......-...++..+.+.+.. . .-.+..++.++.+++...... .+.. +
T Consensus 202 ~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-------~i~~-~ 273 (394)
T COG4886 202 PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-------SISS-L 273 (394)
T ss_pred chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-------cccc-c
Confidence 221 1112488888777631 111111223344444433321 1 234456666777766543221 1222 6
Q ss_pred ccCCCCcEEEEecccc
Q 038350 305 NPFSDARILQVSTSAL 320 (472)
Q Consensus 305 ~~l~~L~~L~l~~~~~ 320 (472)
..+.+++.|++++..+
T Consensus 274 ~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 274 GSLTNLRELDLSGNSL 289 (394)
T ss_pred cccCccCEEeccCccc
Confidence 7788999999987643
No 77
>PF13013 F-box-like_2: F-box-like domain
Probab=71.31 E-value=2.2 Score=33.79 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=25.9
Q ss_pred CCCCCchHHHHHHHhcCChhhHhhhhhhcc
Q 038350 7 PLSDFHDDLIIVIITFLPFIDAYRLCMSKK 36 (472)
Q Consensus 7 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSk 36 (472)
.+.+||+||+..|+.+-...+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 367899999999999999888877777776
No 78
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.74 E-value=0.58 Score=43.34 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=40.6
Q ss_pred hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
.+...++.||.|.|+-+.+..+ .++..|.+|+.|.|.-+ ...++.. ...|++.|+|+.|.|..++
T Consensus 35 sic~kMp~lEVLsLSvNkIssL--------~pl~rCtrLkElYLRkN-~I~sldE-L~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSL--------APLQRCTRLKELYLRKN-CIESLDE-LEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHhcccceeEEeeccccccc--------hhHHHHHHHHHHHHHhc-ccccHHH-HHHHhcCchhhhHhhccCC
Confidence 3455677888888877655432 34556778888777532 1122222 3347888888888887664
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=67.59 E-value=2.6 Score=21.06 Aligned_cols=11 Identities=36% Similarity=0.262 Sum_probs=4.4
Q ss_pred CcceEeecccC
Q 038350 214 FLETLSLVECY 224 (472)
Q Consensus 214 ~Le~L~l~~c~ 224 (472)
+|+.|+|.+|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44455554443
No 80
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=66.91 E-value=9.3 Score=25.56 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=28.7
Q ss_pred cCCceeEEEec-ccCchhHHHHHHHHhcCCCcceEEEE
Q 038350 337 FWQLEHLTLNT-GLERFELAAIICLLISSPNITTLAIS 373 (472)
Q Consensus 337 ~~~L~~L~l~~-~~~~~~~~~l~~ll~~~p~L~~L~i~ 373 (472)
..+|+.+.+.. .....+...+..++++++.|+++.|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 36788888863 22335678888999999999999986
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.53 E-value=5.7 Score=22.77 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=17.2
Q ss_pred ccccEEEeeeEEeChHHHHHHH
Q 038350 188 IQLTSLALTRVRLSWAAMENIA 209 (472)
Q Consensus 188 ~~L~~L~L~~~~~~~~~l~~l~ 209 (472)
++|++|+|+++.+.+++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5788999999988877776654
No 82
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.26 E-value=1.5 Score=40.74 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=26.7
Q ss_pred eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeCh-HHHHHHHhcCCCcceEeecc
Q 038350 168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSW-AAMENIAHNCPFLETLSLVE 222 (472)
Q Consensus 168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~ 222 (472)
.|+.|.|+-+.+.. ..+..|.+|+.|.|..+.|.+ +.+.. +.+.|+|+.|.|..
T Consensus 42 ~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~E 97 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDE 97 (388)
T ss_pred cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhcc
Confidence 45555555444432 334555555555555555541 23333 44555666555554
No 83
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=60.44 E-value=0.54 Score=49.27 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=13.2
Q ss_pred EEEEEEeeeeecC-CCCCCcccccEEEeeeEE
Q 038350 169 IRVLNINSCGLGL-CNFVNFIQLTSLALTRVR 199 (472)
Q Consensus 169 L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~ 199 (472)
|++|+|+++.|.. ..+..|+.|++|+|+.+.
T Consensus 189 le~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVDNLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred hhhhccchhhhhhhHHHHhcccccccccccch
Confidence 4444444444431 223444444444444443
No 84
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=51.58 E-value=3.4 Score=37.96 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=39.6
Q ss_pred CCCCCchHHHHHHHhcCC-hhhHhhhhhhccccc----ccccccccceeEeecCcc
Q 038350 7 PLSDFHDDLIIVIITFLP-FIDAYRLCMSKKKWY----DRSLWLHCRSFELHEASF 57 (472)
Q Consensus 7 ~is~LPd~iL~~Ils~L~-~~d~~r~s~vSkrWr----~~~~w~~~~~l~f~~~~~ 57 (472)
-+.+||.+++..|+-+|+ -+|++.++.|-..-. |+.+|+.+..++|....+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 378999999999999996 499998887643332 447899888888876543
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=48.40 E-value=2.9 Score=34.77 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=30.7
Q ss_pred eEEEEEEeeeeec--CCCC-CCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 168 CIRVLNINSCGLG--LCNF-VNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 168 ~L~~L~L~~~~l~--~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
.|+..+|+++.|. |+.| ..+|.+++|+|.++.+.+ +..-+...|.|+.|+++...
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCc
Confidence 5555566665554 2333 455667777776666652 22225556666666666543
No 86
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=47.71 E-value=14 Score=28.63 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.2
Q ss_pred CCCCCCchHHHHHHHhcCChhhHhh
Q 038350 6 DPLSDFHDDLIIVIITFLPFIDAYR 30 (472)
Q Consensus 6 D~is~LPd~iL~~Ils~L~~~d~~r 30 (472)
..++.||-||-..||++|+.+|...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999998754
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=44.61 E-value=15 Score=29.57 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=25.9
Q ss_pred cCCceEEEEEEeee--eecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecc
Q 038350 164 EQGMCIRVLNINSC--GLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVE 222 (472)
Q Consensus 164 ~~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~ 222 (472)
.|. .|+.+.+... .+....|.++++|+.+.+... +.. --...+.+|+.|+.+.+..
T Consensus 10 ~~~-~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 10 NCS-NLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T-T-T--EEEETST--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS
T ss_pred CCC-CCCEEEECCCeeEeChhhccccccccccccccc-ccc-cceeeeecccccccccccc
Confidence 344 6777776532 333455677777887777542 220 0012355677777777743
No 88
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=43.92 E-value=7.1 Score=39.31 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=59.6
Q ss_pred eEEEEEEeeeeecC--CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEee
Q 038350 168 CIRVLNINSCGLGL--CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRH 245 (472)
Q Consensus 168 ~L~~L~L~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~ 245 (472)
.++.+.+..+.+.. ..+..+.+|+.|++.++.+. .+..++.+|++|+.|++.+.. ++.+.--..++.|+.|.+.+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccc-cccccchhhccchhhheecc
Confidence 55555555554443 23578899999999998886 455557789999999999764 33333223334677888777
Q ss_pred ccCCceeEEE--eCCCeeEEEEee
Q 038350 246 CQSLSLGIEL--WLPRLQYFEYAG 267 (472)
Q Consensus 246 c~~~~~~~~i--~~p~L~~L~l~~ 267 (472)
+.. ..+.- ..++|+.+.+.+
T Consensus 150 N~i--~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 150 NLI--SDISGLESLKSLKLLDLSY 171 (414)
T ss_pred Ccc--hhccCCccchhhhcccCCc
Confidence 752 22211 144555555544
No 89
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=43.08 E-value=43 Score=23.97 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCceeEEEec-ccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 338 WQLEHLTLNT-GLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 338 ~~L~~L~l~~-~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
.+|+.+.+.. .....+...+..+++++|.|+++.|....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 3466777652 12335677888999999999999998864
No 90
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=40.59 E-value=0.42 Score=48.56 Aligned_cols=48 Identities=23% Similarity=0.107 Sum_probs=28.1
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeC
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~ 201 (472)
+..-++|..+..|. .|+.|.|..+.+. |....++..|+.|+|+.+++.
T Consensus 85 NR~~elp~~~~~f~-~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 85 NRFSELPEEACAFV-SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cccccCchHHHHHH-HHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence 45556666555555 5666666544332 455566777777777666554
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=37.49 E-value=7.6 Score=32.37 Aligned_cols=49 Identities=20% Similarity=0.122 Sum_probs=36.5
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeC
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~ 201 (472)
+..-.+|..+-.-.++++.|+|.++.+. |..++.+|.||.|++..+.+.
T Consensus 63 N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 63 NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence 4555677644332238899999998776 556899999999999988765
No 92
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=36.85 E-value=8.9 Score=36.49 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=30.5
Q ss_pred CCCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350 7 PLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY 39 (472)
Q Consensus 7 ~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr 39 (472)
-+..+|++++..|++|+.-+++.++++||+|-.
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk 39 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLK 39 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHh
Confidence 355799999999999999999999999999997
No 93
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=36.15 E-value=6.6 Score=40.36 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=31.9
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeC
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~ 201 (472)
+..-.+|..++.|+ |+.|-++++.+. |.+.+..+.|..|+.+.|.+.
T Consensus 131 NqlS~lp~~lC~lp--Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP--LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred chhhcCChhhhcCc--ceeEEEecCccccCCcccccchhHHHhhhhhhhhh
Confidence 34456777776664 888888877665 555667777777777777554
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=30.06 E-value=28 Score=19.17 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=9.0
Q ss_pred ccccEEEeeeEEeC
Q 038350 188 IQLTSLALTRVRLS 201 (472)
Q Consensus 188 ~~L~~L~L~~~~~~ 201 (472)
++|++|+|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56677777666554
No 95
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=30.06 E-value=28 Score=19.17 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=9.0
Q ss_pred ccccEEEeeeEEeC
Q 038350 188 IQLTSLALTRVRLS 201 (472)
Q Consensus 188 ~~L~~L~L~~~~~~ 201 (472)
++|++|+|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56677777666554
No 96
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=26.79 E-value=1.5e+02 Score=24.37 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=32.3
Q ss_pred cCccceEEEEeeccccCcc--hhhHHHHHHHHhhhccCCeEEee
Q 038350 430 NSRSIKELNIKQLIRATSS--VTSEAFKEINQAVAASGGVVINW 471 (472)
Q Consensus 430 ~~~~L~~l~i~~~~~~~~~--~~~~~~~~l~~~~~as~~~~i~~ 471 (472)
....|+++++++++....+ .+.++-.++.++-+.+|.++|.+
T Consensus 19 yv~ql~rit~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v 62 (145)
T KOG3445|consen 19 YVWQLRRITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYV 62 (145)
T ss_pred hhheeeEEEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 3467899999998764333 35667789999999999999875
Done!