Query 038350
Match_columns 472
No_of_seqs 177 out of 2098
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:23:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 6.1E-21 2.1E-25 199.9 9.7 43 4-48 5-52 (592)
2 2p1m_B Transport inhibitor res 99.8 1E-20 3.5E-25 198.2 11.3 405 4-444 2-518 (594)
3 2ast_B S-phase kinase-associat 99.7 3E-19 1E-23 173.5 1.0 271 6-368 7-299 (336)
4 4fcg_A Uncharacterized protein 99.3 8E-13 2.7E-17 127.6 4.9 202 124-376 75-288 (328)
5 2z80_A TOLL-like receptor 2, v 99.2 8.4E-11 2.9E-15 114.6 14.4 262 130-432 52-331 (353)
6 4fmz_A Internalin; leucine ric 99.2 2.4E-11 8.3E-16 118.0 6.9 236 162-444 84-323 (347)
7 4fcg_A Uncharacterized protein 99.2 3E-11 1E-15 116.6 6.8 224 168-441 82-310 (328)
8 3ogk_B Coronatine-insensitive 99.1 6.3E-11 2.2E-15 123.7 8.7 234 185-440 290-546 (592)
9 2p1m_B Transport inhibitor res 99.1 1.3E-11 4.6E-16 128.8 2.9 202 164-375 103-348 (594)
10 2id5_A Lingo-1, leucine rich r 99.0 1.2E-10 4E-15 118.3 5.9 260 161-447 51-335 (477)
11 3v47_A TOLL-like receptor 5B a 99.0 1.4E-10 4.7E-15 117.0 5.7 85 162-247 75-165 (455)
12 2id5_A Lingo-1, leucine rich r 99.0 5.8E-11 2E-15 120.6 1.8 235 159-420 73-338 (477)
13 2z66_A Variable lymphocyte rec 99.0 1.1E-10 3.8E-15 111.3 3.1 242 154-428 18-274 (306)
14 3t6q_A CD180 antigen; protein- 99.0 4.8E-11 1.6E-15 125.0 0.3 79 168-247 279-361 (606)
15 2z81_A CD282 antigen, TOLL-lik 99.0 7.2E-09 2.5E-13 107.0 16.4 206 159-377 43-263 (549)
16 3v47_A TOLL-like receptor 5B a 99.0 1.3E-10 4.4E-15 117.2 3.1 65 159-224 96-165 (455)
17 1o6v_A Internalin A; bacterial 99.0 4.2E-10 1.4E-14 114.0 6.9 250 157-444 60-321 (466)
18 2z63_A TOLL-like receptor 4, v 99.0 5.2E-10 1.8E-14 116.1 7.8 195 159-375 275-480 (570)
19 3rgz_A Protein brassinosteroid 99.0 1.3E-10 4.3E-15 125.3 3.1 151 257-443 393-549 (768)
20 3zyj_A Leucine-rich repeat-con 99.0 3.2E-10 1.1E-14 113.9 5.5 236 154-428 54-305 (440)
21 2z80_A TOLL-like receptor 2, v 99.0 2E-09 6.8E-14 104.8 10.9 187 154-376 42-233 (353)
22 2ast_B S-phase kinase-associat 99.0 2.8E-10 9.6E-15 109.9 4.5 208 168-414 71-282 (336)
23 1o6v_A Internalin A; bacterial 99.0 5.2E-10 1.8E-14 113.3 6.4 233 162-444 86-343 (466)
24 3zyi_A Leucine-rich repeat-con 98.9 3.4E-10 1.2E-14 114.1 4.8 235 155-428 66-316 (452)
25 3rgz_A Protein brassinosteroid 98.9 7.5E-11 2.6E-15 127.0 -0.6 16 360-375 313-328 (768)
26 3t6q_A CD180 antigen; protein- 98.9 2.7E-10 9.3E-15 119.2 3.3 78 168-247 255-336 (606)
27 4fmz_A Internalin; leucine ric 98.9 3.7E-10 1.3E-14 109.6 4.0 274 100-442 66-343 (347)
28 3o6n_A APL1; leucine-rich repe 98.9 7.2E-10 2.5E-14 109.4 6.1 188 163-375 114-305 (390)
29 4eco_A Uncharacterized protein 98.9 7.6E-10 2.6E-14 116.5 5.8 202 158-378 239-470 (636)
30 2z81_A CD282 antigen, TOLL-lik 98.9 5.3E-09 1.8E-13 108.0 12.0 243 153-442 15-261 (549)
31 3o6n_A APL1; leucine-rich repe 98.9 4.4E-10 1.5E-14 111.0 3.6 183 168-375 94-282 (390)
32 1ozn_A Reticulon 4 receptor; N 98.9 2.3E-10 7.8E-15 107.9 1.4 202 155-375 23-235 (285)
33 3oja_B Anopheles plasmodium-re 98.9 4.9E-10 1.7E-14 117.1 3.6 55 168-223 124-181 (597)
34 1z7x_W Ribonuclease inhibitor; 98.9 1.6E-10 5.6E-15 116.6 -0.2 184 188-376 142-352 (461)
35 1ogq_A PGIP-2, polygalacturona 98.9 4.6E-10 1.6E-14 107.4 2.3 199 157-376 67-279 (313)
36 3zyi_A Leucine-rich repeat-con 98.9 5.2E-10 1.8E-14 112.8 2.4 195 162-375 95-300 (452)
37 3vq2_A TLR4, TOLL-like recepto 98.9 8.5E-10 2.9E-14 115.5 4.0 144 164-320 283-436 (606)
38 3vq2_A TLR4, TOLL-like recepto 98.9 3.6E-10 1.2E-14 118.3 0.8 75 130-223 285-360 (606)
39 3j0a_A TOLL-like receptor 5; m 98.8 1.2E-08 4.1E-13 111.0 12.7 64 159-223 90-158 (844)
40 3oja_B Anopheles plasmodium-re 98.8 1.4E-09 4.9E-14 113.6 5.2 197 153-376 133-335 (597)
41 2ca6_A RAN GTPase-activating p 98.8 7.3E-10 2.5E-14 109.3 2.5 90 157-247 23-133 (386)
42 2z7x_B TOLL-like receptor 1, v 98.8 4.8E-09 1.6E-13 107.6 8.3 77 168-247 22-101 (520)
43 2z63_A TOLL-like receptor 4, v 98.8 2E-09 6.8E-14 111.7 5.4 95 168-267 258-356 (570)
44 3o53_A Protein LRIM1, AGAP0063 98.8 1E-10 3.5E-15 112.2 -4.1 228 168-440 35-270 (317)
45 1z7x_W Ribonuclease inhibitor; 98.8 3.2E-10 1.1E-14 114.5 -1.4 43 402-444 282-325 (461)
46 3j0a_A TOLL-like receptor 5; m 98.8 7.5E-09 2.6E-13 112.6 9.2 60 308-376 266-325 (844)
47 3zyj_A Leucine-rich repeat-con 98.8 7.6E-10 2.6E-14 111.2 1.2 194 164-376 86-290 (440)
48 3oja_A Leucine-rich immune mol 98.8 5.6E-10 1.9E-14 113.6 0.1 206 168-415 35-248 (487)
49 1h6u_A Internalin H; cell adhe 98.8 6.8E-10 2.3E-14 106.0 0.1 189 129-377 40-229 (308)
50 1ogq_A PGIP-2, polygalacturona 98.7 4.2E-10 1.4E-14 107.7 -2.7 216 129-376 75-302 (313)
51 2z7x_B TOLL-like receptor 1, v 98.7 5.8E-08 2E-12 99.5 13.1 67 305-378 321-387 (520)
52 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 3.7E-09 1.3E-13 72.0 2.7 36 4-39 5-40 (53)
53 2z66_A Variable lymphocyte rec 98.7 1.1E-10 3.9E-15 111.2 -7.2 202 156-376 41-259 (306)
54 4eco_A Uncharacterized protein 98.7 1.2E-09 4.1E-14 115.0 -0.7 102 130-246 249-363 (636)
55 4ecn_A Leucine-rich repeat pro 98.7 5.7E-09 2E-13 112.7 4.1 205 158-378 481-710 (876)
56 1xku_A Decorin; proteoglycan, 98.7 3.2E-09 1.1E-13 102.3 1.8 64 303-376 211-274 (330)
57 3bz5_A Internalin-J, INLJ; leu 98.7 6.5E-09 2.2E-13 104.8 4.0 116 162-286 60-178 (457)
58 1ziw_A TOLL-like receptor 3; i 98.7 4.9E-09 1.7E-13 111.2 3.2 68 303-376 475-547 (680)
59 2z62_A TOLL-like receptor 4, v 98.7 2.2E-09 7.4E-14 100.6 0.0 88 155-247 19-111 (276)
60 4ecn_A Leucine-rich repeat pro 98.7 9E-09 3.1E-13 111.2 4.3 102 130-247 491-606 (876)
61 1ozn_A Reticulon 4 receptor; N 98.7 4.8E-09 1.6E-13 98.8 1.9 225 170-427 14-250 (285)
62 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 2.8E-08 9.6E-13 102.9 7.8 66 305-377 350-415 (562)
63 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 4.2E-08 1.4E-12 101.7 8.6 40 402-443 375-414 (562)
64 2ft3_A Biglycan; proteoglycan, 98.6 1.7E-09 5.9E-14 104.3 -1.8 204 156-376 46-275 (332)
65 3g06_A SSPH2 (leucine-rich rep 98.6 5.3E-09 1.8E-13 109.1 1.7 98 156-267 53-150 (622)
66 2ca6_A RAN GTPase-activating p 98.6 9.6E-10 3.3E-14 108.4 -3.9 99 274-376 212-314 (386)
67 3oja_A Leucine-rich immune mol 98.6 3.6E-09 1.2E-13 107.6 -0.7 135 131-287 35-178 (487)
68 3bz5_A Internalin-J, INLJ; leu 98.6 7.5E-09 2.6E-13 104.3 1.5 144 161-321 37-183 (457)
69 1p9a_G Platelet glycoprotein I 98.6 6E-09 2.1E-13 98.5 0.7 33 168-200 32-67 (290)
70 1ziw_A TOLL-like receptor 3; i 98.6 4.4E-09 1.5E-13 111.6 -0.3 102 130-247 73-182 (680)
71 1xku_A Decorin; proteoglycan, 98.6 3.2E-08 1.1E-12 95.2 5.2 201 159-376 93-304 (330)
72 3o53_A Protein LRIM1, AGAP0063 98.6 3.4E-09 1.2E-13 101.5 -2.3 187 161-375 53-247 (317)
73 3goz_A Leucine-rich repeat-con 98.5 1.3E-08 4.4E-13 99.4 1.4 80 168-248 23-121 (362)
74 1h6u_A Internalin H; cell adhe 98.5 3E-08 1E-12 94.5 3.9 119 129-267 62-182 (308)
75 2xwt_C Thyrotropin receptor; s 98.5 2.2E-08 7.4E-13 91.6 1.5 172 168-377 32-217 (239)
76 2o6q_A Variable lymphocyte rec 98.5 2.8E-08 9.6E-13 92.8 2.0 179 156-376 29-216 (270)
77 3e4g_A ATP synthase subunit S, 98.5 5.7E-08 2E-12 83.4 3.4 91 156-247 51-150 (176)
78 1wwl_A Monocyte differentiatio 98.5 8.4E-09 2.9E-13 98.5 -2.0 82 164-247 93-184 (312)
79 1h6t_A Internalin B; cell adhe 98.4 1.5E-08 5.2E-13 95.7 -1.2 57 164-224 66-123 (291)
80 4ezg_A Putative uncharacterize 98.4 2.1E-07 7E-12 82.4 5.3 84 162-247 84-170 (197)
81 2o6q_A Variable lymphocyte rec 98.4 2.6E-08 9E-13 92.9 -0.8 215 165-429 14-233 (270)
82 3rfs_A Internalin B, repeat mo 98.4 5.1E-08 1.7E-12 91.1 1.0 153 162-347 59-214 (272)
83 3g06_A SSPH2 (leucine-rich rep 98.4 1.3E-07 4.3E-12 98.7 4.0 71 130-223 61-131 (622)
84 2ft3_A Biglycan; proteoglycan, 98.4 2.1E-08 7.3E-13 96.6 -2.2 117 168-288 34-157 (332)
85 4ezg_A Putative uncharacterize 98.4 9.4E-08 3.2E-12 84.6 1.7 54 168-224 45-99 (197)
86 3rfs_A Internalin B, repeat mo 98.3 3.9E-08 1.3E-12 91.9 -1.0 172 168-376 42-216 (272)
87 2z62_A TOLL-like receptor 4, v 98.3 6E-08 2E-12 90.7 -0.0 89 157-247 42-135 (276)
88 2xwt_C Thyrotropin receptor; s 98.3 6.7E-07 2.3E-11 81.6 7.0 151 188-375 31-189 (239)
89 1p9a_G Platelet glycoprotein I 98.3 6.4E-08 2.2E-12 91.3 -0.6 191 168-376 11-206 (290)
90 1wwl_A Monocyte differentiatio 98.3 1.1E-08 3.7E-13 97.8 -6.2 203 157-376 56-285 (312)
91 1m9s_A Internalin B; cell inva 98.3 8.3E-08 2.9E-12 99.8 -0.6 101 162-267 61-162 (605)
92 4glp_A Monocyte differentiatio 98.2 5.2E-08 1.8E-12 92.9 -3.1 56 168-224 118-180 (310)
93 3goz_A Leucine-rich repeat-con 98.2 1.2E-07 4.2E-12 92.4 -1.0 242 185-443 19-295 (362)
94 1m9s_A Internalin B; cell inva 98.2 3.4E-07 1.2E-11 95.3 1.3 53 168-223 88-141 (605)
95 1h6t_A Internalin B; cell adhe 98.2 5.3E-07 1.8E-11 85.0 2.3 160 168-348 47-210 (291)
96 4glp_A Monocyte differentiatio 98.1 2.8E-07 9.5E-12 87.8 -0.0 189 168-376 92-305 (310)
97 2ell_A Acidic leucine-rich nuc 98.1 9.6E-07 3.3E-11 75.8 3.2 72 304-380 91-162 (168)
98 3m19_A Variable lymphocyte rec 98.1 1.2E-06 4.1E-11 80.6 3.5 88 155-247 26-118 (251)
99 4ay9_X Follicle-stimulating ho 98.1 1E-06 3.5E-11 85.4 2.7 91 155-248 21-116 (350)
100 2ra8_A Uncharacterized protein 98.0 1.7E-06 6E-11 83.9 3.1 60 186-247 137-204 (362)
101 3m19_A Variable lymphocyte rec 98.0 8E-07 2.7E-11 81.8 0.3 78 168-247 15-94 (251)
102 1jl5_A Outer protein YOPM; leu 98.0 4.6E-06 1.6E-10 83.8 5.5 34 168-201 132-166 (454)
103 4g8a_A TOLL-like receptor 4; l 98.0 1.2E-06 4.2E-11 91.6 1.3 108 302-432 488-597 (635)
104 2ell_A Acidic leucine-rich nuc 98.0 9.5E-07 3.2E-11 75.8 0.3 88 157-247 40-131 (168)
105 2je0_A Acidic leucine-rich nuc 97.9 8.9E-07 3.1E-11 74.3 -1.1 14 359-372 134-147 (149)
106 1xeu_A Internalin C; cellular 97.9 2.8E-06 9.5E-11 78.8 1.5 54 168-224 42-96 (263)
107 3cvr_A Invasion plasmid antige 97.9 3.3E-06 1.1E-10 87.0 2.1 182 128-348 57-240 (571)
108 1jl5_A Outer protein YOPM; leu 97.9 3.6E-06 1.2E-10 84.6 2.3 196 131-378 174-370 (454)
109 3un9_A NLR family member X1; l 97.8 1.1E-06 3.7E-11 85.9 -2.2 75 300-376 175-250 (372)
110 2je0_A Acidic leucine-rich nuc 97.8 9.3E-07 3.2E-11 74.2 -2.6 88 157-247 33-124 (149)
111 3l2o_B F-box only protein 4; s 97.8 2.1E-06 7.1E-11 78.8 -0.9 40 8-47 5-48 (312)
112 4g8a_A TOLL-like receptor 4; l 97.8 2.4E-05 8.3E-10 81.6 7.0 202 156-375 44-259 (635)
113 3e4g_A ATP synthase subunit S, 97.8 2.1E-06 7.1E-11 73.7 -1.0 80 186-267 59-148 (176)
114 1xeu_A Internalin C; cellular 97.8 6.6E-06 2.3E-10 76.2 2.3 95 168-268 20-116 (263)
115 3cvr_A Invasion plasmid antige 97.8 4.3E-05 1.5E-09 78.6 8.2 171 168-376 60-241 (571)
116 4ay9_X Follicle-stimulating ho 97.7 3.2E-05 1.1E-09 74.7 6.1 212 130-374 30-255 (350)
117 2ra8_A Uncharacterized protein 97.7 6.9E-05 2.4E-09 72.6 8.4 133 85-222 92-228 (362)
118 2e31_A FBS1, F-box only protei 97.7 1.1E-05 3.9E-10 74.8 2.3 34 6-39 49-83 (297)
119 2o6s_A Variable lymphocyte rec 97.7 1.6E-06 5.3E-11 77.3 -3.5 89 154-247 18-111 (208)
120 2v9t_B SLIT homolog 2 protein 97.6 3.7E-05 1.3E-09 69.0 4.8 67 154-224 22-91 (220)
121 3e6j_A Variable lymphocyte rec 97.6 2.2E-05 7.5E-10 71.0 2.6 66 155-224 31-99 (229)
122 1a9n_A U2A', U2A'; complex (nu 97.6 1.4E-05 4.7E-10 69.1 1.2 67 305-376 85-151 (176)
123 2o6s_A Variable lymphocyte rec 97.5 1.8E-05 6.1E-10 70.3 0.9 163 171-375 11-175 (208)
124 3sb4_A Hypothetical leucine ri 97.5 3.9E-05 1.3E-09 73.5 3.0 83 277-376 225-308 (329)
125 1ds9_A Outer arm dynein; leuci 97.4 7.8E-07 2.7E-11 78.7 -9.2 64 157-223 39-103 (198)
126 3e6j_A Variable lymphocyte rec 97.4 0.0001 3.5E-09 66.5 4.6 131 274-435 60-193 (229)
127 1a9n_A U2A', U2A'; complex (nu 97.3 4E-05 1.4E-09 66.1 -0.2 57 164-224 17-75 (176)
128 2v70_A SLIT-2, SLIT homolog 2 97.2 9.4E-05 3.2E-09 66.3 2.2 39 304-348 125-163 (220)
129 3v7d_B Cell division control p 97.2 4E-05 1.4E-09 76.6 -0.4 36 4-39 11-46 (464)
130 2v9t_B SLIT homolog 2 protein 97.2 0.0006 2E-08 61.0 6.6 126 274-429 52-179 (220)
131 1p22_A F-BOX/WD-repeat protein 97.1 4.9E-05 1.7E-09 75.5 -0.8 44 4-47 7-58 (435)
132 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00012 4.1E-09 72.8 1.8 44 4-47 15-62 (445)
133 2xot_A Amphoterin-induced prot 97.1 0.00022 7.5E-09 69.1 3.6 88 155-247 30-123 (361)
134 2xot_A Amphoterin-induced prot 97.0 0.00013 4.5E-09 70.7 0.4 109 154-267 50-172 (361)
135 1dce_A Protein (RAB geranylger 96.9 8.6E-05 2.9E-09 76.6 -1.3 86 156-247 454-544 (567)
136 2wfh_A SLIT homolog 2 protein 96.8 0.00033 1.1E-08 61.4 1.8 97 168-268 32-136 (193)
137 1dce_A Protein (RAB geranylger 96.8 0.00015 5.1E-09 74.8 -0.7 21 302-322 527-547 (567)
138 4fdw_A Leucine rich hypothetic 96.8 0.0005 1.7E-08 67.6 3.1 15 304-318 267-281 (401)
139 2v70_A SLIT-2, SLIT homolog 2 96.7 0.0015 5.2E-08 58.3 5.3 101 303-427 76-178 (220)
140 2wfh_A SLIT homolog 2 protein 96.7 0.00014 4.9E-09 63.7 -1.6 94 188-286 31-134 (193)
141 3un9_A NLR family member X1; l 96.7 0.00028 9.7E-09 68.6 0.3 70 305-376 152-222 (372)
142 1w8a_A SLIT protein; signaling 96.7 0.0002 6.9E-09 62.6 -0.8 89 154-247 19-113 (192)
143 3sb4_A Hypothetical leucine ri 96.7 0.00054 1.9E-08 65.4 2.1 184 165-371 100-327 (329)
144 2o6r_A Variable lymphocyte rec 96.5 0.00066 2.2E-08 58.3 1.2 106 156-268 20-134 (177)
145 4b8c_D Glucose-repressible alc 96.4 0.0002 7E-09 76.1 -3.0 91 154-248 235-328 (727)
146 1w8a_A SLIT protein; signaling 96.4 0.00067 2.3E-08 59.2 0.5 61 162-224 50-113 (192)
147 2r9u_A Variable lymphocyte rec 96.2 0.00093 3.2E-08 57.3 0.7 67 154-224 23-92 (174)
148 3g39_A Variable lymphocyte rec 96.2 0.00094 3.2E-08 57.0 0.6 67 154-224 20-89 (170)
149 4b8c_D Glucose-repressible alc 96.2 0.0002 7E-09 76.1 -4.5 105 159-267 217-325 (727)
150 1io0_A Tropomodulin; LRR prote 96.0 0.0042 1.4E-07 53.7 3.7 72 302-375 87-161 (185)
151 1ds9_A Outer arm dynein; leuci 96.0 0.0025 8.7E-08 55.7 2.1 100 129-247 47-151 (198)
152 1io0_A Tropomodulin; LRR prote 95.9 0.0059 2E-07 52.8 4.3 132 298-444 26-163 (185)
153 2o6r_A Variable lymphocyte rec 95.9 0.012 4.2E-07 50.1 6.2 107 303-433 47-155 (177)
154 4fdw_A Leucine rich hypothetic 95.7 0.0057 2E-07 60.0 3.6 56 161-222 175-235 (401)
155 3g39_A Variable lymphocyte rec 95.5 0.0044 1.5E-07 52.7 1.6 68 155-224 42-113 (170)
156 2r9u_A Variable lymphocyte rec 95.4 0.005 1.7E-07 52.6 1.8 80 130-224 33-116 (174)
157 2ifg_A High affinity nerve gro 95.2 0.0041 1.4E-07 59.6 0.7 90 154-247 20-114 (347)
158 4fs7_A Uncharacterized protein 94.2 0.014 4.8E-07 57.0 1.5 63 302-375 314-376 (394)
159 2ifg_A High affinity nerve gro 91.3 0.19 6.4E-06 47.7 5.0 64 304-376 27-91 (347)
160 3rw6_A Nuclear RNA export fact 88.6 0.2 6.9E-06 45.7 2.5 66 300-371 188-257 (267)
161 3rw6_A Nuclear RNA export fact 87.8 0.14 4.8E-06 46.8 0.9 63 158-221 188-259 (267)
162 4gt6_A Cell surface protein; l 82.3 0.58 2E-05 45.3 2.5 99 257-375 287-388 (394)
163 4h09_A Hypothetical leucine ri 80.2 0.8 2.7E-05 43.9 2.6 61 157-223 104-168 (379)
164 4fs7_A Uncharacterized protein 77.9 1.9 6.6E-05 41.5 4.6 55 257-318 319-376 (394)
165 1pgv_A TMD-1, tropomodulin TMD 74.2 3.3 0.00011 35.7 4.5 131 298-443 31-168 (197)
166 1pgv_A TMD-1, tropomodulin TMD 72.3 0.82 2.8E-05 39.5 0.2 56 168-223 71-136 (197)
167 4gt6_A Cell surface protein; l 69.9 1.5 5E-05 42.3 1.5 121 181-319 258-389 (394)
168 3rfe_A Platelet glycoprotein I 56.5 4 0.00014 32.4 1.5 42 157-201 24-68 (130)
169 4h09_A Hypothetical leucine ri 52.8 11 0.00039 35.6 4.3 56 162-222 236-295 (379)
170 1s3a_A NADH-ubiquinone oxidore 45.2 18 0.00063 27.2 3.5 39 433-471 18-58 (102)
171 2kwv_A RAD30 homolog B, DNA po 25.8 49 0.0017 20.6 2.3 15 8-22 21-35 (48)
172 3rfe_A Platelet glycoprotein I 20.2 1.1E+02 0.0037 23.7 4.2 57 303-365 25-84 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=6.1e-21 Score=199.88 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCCCCC----CCchHHHHHHHhcC-ChhhHhhhhhhcccccccccccccc
Q 038350 4 NTDPLS----DFHDDLIIVIITFL-PFIDAYRLCMSKKKWYDRSLWLHCR 48 (472)
Q Consensus 4 ~~D~is----~LPd~iL~~Ils~L-~~~d~~r~s~vSkrWr~~~~w~~~~ 48 (472)
+.|+++ .|||||+.+||+|| +.+|++++++|||||+ +++...+
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~--~~~~~~~ 52 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWF--KIDSETR 52 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHH--HHHHHHC
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHH--Hhhhccc
Confidence 457777 89999999999999 8999999999999999 8754443
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1e-20 Score=198.22 Aligned_cols=405 Identities=11% Similarity=0.050 Sum_probs=193.2
Q ss_pred CCCCCCCCchHHHHHHHhcCC-hhhHhhhhhhcccccccccccc-cceeEeecCcccCcccchhhcccccchhhh-----
Q 038350 4 NTDPLSDFHDDLIIVIITFLP-FIDAYRLCMSKKKWYDRSLWLH-CRSFELHEASFMMPDSRQYWLSIGRRTQVM----- 76 (472)
Q Consensus 4 ~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vSkrWr~~~~w~~-~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (472)
..|+++.||||||.+||+||| .+|+++++.|||||+ ++... ...+.+.......+.. ...++..+.
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~--~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~L~~L~L~ 74 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWY--EIERWCRRKVFIGNCYAVSPAT-----VIRRFPKVRSVELK 74 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHH--HHHHHHCCEEEESSTTSSCHHH-----HHHHCTTCCEEEEE
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHH--HhhhhhceEEeeccccccCHHH-----HHhhCCCceEEecc
Confidence 358999999999999999999 899999999999999 76211 1122222110000000 000000000
Q ss_pred hHhhhh---------hhhHHHHHHHHHHhhcCCCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCC
Q 038350 77 YMKRIG---------RLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVP 147 (472)
Q Consensus 77 ~~~~~~---------~~~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~ 147 (472)
...... ...+...+..+.. ..+.++.+.+..... ....+..... ..++++.|.+..+..
T Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~l~~l~~--~~~~L~~L~L~~~~~---~~~~~~~l~~--~~~~L~~L~L~~~~~----- 142 (594)
T 2p1m_B 75 GKPHFADFNLVPDGWGGYVYPWIEAMSS--SYTWLEEIRLKRMVV---TDDCLELIAK--SFKNFKVLVLSSCEG----- 142 (594)
T ss_dssp CSCGGGGGTCSCTTSCCBCHHHHHHHHH--HCTTCCEEEEESCBC---CHHHHHHHHH--HCTTCCEEEEESCEE-----
T ss_pred CCCchhhcccccccccchhhHHHHHHHH--hCCCCCeEEeeCcEE---cHHHHHHHHH--hCCCCcEEeCCCcCC-----
Confidence 000000 0000111222211 123455555543321 1122111110 135666666542100
Q ss_pred CCCCCCCcccCCcccccCCceEEEEEEeeeeecCCC-------CCCcccccEEEeeeEE--eChHHHHHHHhcCCCcceE
Q 038350 148 QPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCN-------FVNFIQLTSLALTRVR--LSWAAMENIAHNCPFLETL 218 (472)
Q Consensus 148 ~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~-------~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L 218 (472)
.....++.....|+ +|++|+|++|.+...+ ...+++|++|+|.++. +++..+..++.+||+|+.|
T Consensus 143 -----~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 143 -----FSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp -----EEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred -----CCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 01111333333566 8888888887665321 2467899999998875 6678898988899999999
Q ss_pred eecccCC-------------ceeEEEe------------------------------------------eCCCCeeEEEE
Q 038350 219 SLVECYR-------------IFKVEIT------------------------------------------LRTLGLRKLIV 243 (472)
Q Consensus 219 ~l~~c~~-------------~~~l~i~------------------------------------------~~~~~L~~L~l 243 (472)
++.+|.. +..+.+. ..+++|++|.+
T Consensus 217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEEC
T ss_pred ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEc
Confidence 9998732 2222210 01356777777
Q ss_pred eeccCCc---eeEEEeCCCeeEEEEeeeece----EeecCCCceeEEEEEEeecc---cccC-chhhHHhhcccCCCCcE
Q 038350 244 RHCQSLS---LGIELWLPRLQYFEYAGKMVP----FDMRGMDDLEVVVLDYRLDT---RYSY-NGDDIESLFNPFSDARI 312 (472)
Q Consensus 244 ~~c~~~~---~~~~i~~p~L~~L~l~~~~~~----~~~~~~~~L~~l~l~~~~~~---~~~~-~~~~~~~ll~~l~~L~~ 312 (472)
.+|.... ..+.-.+|+|++|.+.+.... .....+++|+++++..+... .... ....+..+..++++|++
T Consensus 297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 297 SYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred cCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 7665311 111124677777777664211 11224677777776431100 0000 12345555566777777
Q ss_pred EEEecccccccccccccccCCC-cccCCceeEEEec-----ccCch---hHHHHHHHHhcCCCcceEEEEeCcccCCC-C
Q 038350 313 LQVSTSALKIFPTECLLCGRQL-FQFWQLEHLTLNT-----GLERF---ELAAIICLLISSPNITTLAISTGAIMHTP-D 382 (472)
Q Consensus 313 L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~-----~~~~~---~~~~l~~ll~~~p~L~~L~i~~~~~~~~~-~ 382 (472)
|.+..+.+.... . ..+ ..+++|++|++.. +.... ...++..++++||+|+.|++...-..... .
T Consensus 377 L~~~~~~l~~~~-----~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~ 450 (594)
T 2p1m_B 377 VLYFCRQMTNAA-----L-ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450 (594)
T ss_dssp EEEEESCCCHHH-----H-HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred HHHhcCCcCHHH-----H-HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHH
Confidence 766544332110 0 111 2356677777761 11111 03356666667777777776431000000 0
Q ss_pred ---CCCCC-------CCCCccccccccc-ccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350 383 ---FRPNY-------FPLSRGEIWTTNG-SILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR 444 (472)
Q Consensus 383 ---~~~~~-------~~~~~~~~w~~~~-~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~ 444 (472)
..... +++.... .... ..+++|+++.+.+..-+. ..+..++.++++|+.+.++.+..
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~--~~~l~~~~~~L~~L~L~~n~~~~---~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLG--MHHVLSGCDSLRKLEIRDCPFGD---KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHH--HHHHHHHCTTCCEEEEESCSCCH---HHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHhchhccEeeccCCCCcHHH--HHHHHhcCCCcCEEECcCCCCcH---HHHHHHHHhCCCCCEEeeeCCCC
Confidence 00000 0000000 0000 035788888887754422 22334556778888888877654
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=3e-19 Score=173.48 Aligned_cols=271 Identities=15% Similarity=0.137 Sum_probs=150.7
Q ss_pred CCCCCCchHHHHHHHhcCChhhHhhhhhhcccccccccccc---cceeEeecCcccCcccchhhcccccchhhhhHhhhh
Q 038350 6 DPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWYDRSLWLH---CRSFELHEASFMMPDSRQYWLSIGRRTQVMYMKRIG 82 (472)
Q Consensus 6 D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr~~~~w~~---~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (472)
..++.|||||+.+||++|+.+|+++++.|||+|+ .+... ...+++....+
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~--~~~~~~~~~~~l~l~~~~~------------------------- 59 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWY--RLASDESLWQTLDLTGKNL------------------------- 59 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHH--HHHTCSTTSSEEECTTCBC-------------------------
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhcCchhheeeccccccC-------------------------
Confidence 4589999999999999999999999999999999 54311 11122111110
Q ss_pred hhhHHHHHHHHHHhhcCCCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCccc
Q 038350 83 RLKYFHFVDRAVCRLASEFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFF 162 (472)
Q Consensus 83 ~~~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~ 162 (472)
. ...+.....++++.+.+... .....+..+
T Consensus 60 ---------------------------------~----~~~~~~~~~~~l~~L~l~~n-------------~l~~~~~~~ 89 (336)
T 2ast_B 60 ---------------------------------H----PDVTGRLLSQGVIAFRCPRS-------------FMDQPLAEH 89 (336)
T ss_dssp ---------------------------------C----HHHHHHHHHTTCSEEECTTC-------------EECSCCCSC
T ss_pred ---------------------------------C----HHHHHhhhhccceEEEcCCc-------------cccccchhh
Confidence 0 01122223345555554211 111122224
Q ss_pred ccCCceEEEEEEeeeeecC----CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCcee--E-EEeeCC
Q 038350 163 YEQGMCIRVLNINSCGLGL----CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK--V-EITLRT 235 (472)
Q Consensus 163 ~~~~~~L~~L~L~~~~l~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--l-~i~~~~ 235 (472)
+.+. +|++|+|++|.+.. ..+..+++|++|+|.++.+++..... ++.||+|+.|++.+|..++. + .+...+
T Consensus 90 ~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 90 FSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred ccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 4555 78888888776642 23467788888888877777555544 55688888888888755443 1 112235
Q ss_pred CCeeEEEEeec-cCC---ceeEEEeCC-CeeEEEEeeeec-------eEeecCCCceeEEEEEEeecccccCchhhHHhh
Q 038350 236 LGLRKLIVRHC-QSL---SLGIELWLP-RLQYFEYAGKMV-------PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESL 303 (472)
Q Consensus 236 ~~L~~L~l~~c-~~~---~~~~~i~~p-~L~~L~l~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l 303 (472)
++|++|.+.+| ... ........| +|++|.+++... +..+..+++|+.+++..+.... ......
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~ 242 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----NDCFQE 242 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----GGGGGG
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-----HHHHHH
Confidence 67888888777 431 122223466 777777766421 1123456666666665432100 012234
Q ss_pred cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcc
Q 038350 304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNIT 368 (472)
Q Consensus 304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~ 368 (472)
+..+++|++|+++++. ..... + . ..+..+++|+.|++..+.... .+..+.+++|.|+
T Consensus 243 l~~l~~L~~L~l~~~~-~~~~~-~--~-~~l~~~~~L~~L~l~~~i~~~---~~~~l~~~l~~L~ 299 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCY-DIIPE-T--L-LELGEIPTLKTLQVFGIVPDG---TLQLLKEALPHLQ 299 (336)
T ss_dssp GGGCTTCCEEECTTCT-TCCGG-G--G-GGGGGCTTCCEEECTTSSCTT---CHHHHHHHSTTSE
T ss_pred HhCCCCCCEeeCCCCC-CCCHH-H--H-HHHhcCCCCCEEeccCccCHH---HHHHHHhhCcceE
Confidence 4566777777776653 11100 0 0 123456777777776552222 3334444555555
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.31 E-value=8e-13 Score=127.63 Aligned_cols=202 Identities=14% Similarity=0.137 Sum_probs=126.0
Q ss_pred HHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeC
Q 038350 124 IEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 124 l~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~ 201 (472)
+..+...+++.|.+.. +....+|..++.+. +|++|+|+++.+. |..+..+++|++|+|+++.+.
T Consensus 75 l~~~~~~~l~~L~L~~-------------n~l~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 75 LEDATQPGRVALELRS-------------VPLPQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp HHHHTSTTCCEEEEES-------------SCCSSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC
T ss_pred HhcccccceeEEEccC-------------CCchhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccc
Confidence 3344447888888863 23347888888888 9999999999776 455789999999999999887
Q ss_pred hHHHHHHHhcCCCcceEeecccCCceeEEEe----------eCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeece
Q 038350 202 WAAMENIAHNCPFLETLSLVECYRIFKVEIT----------LRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVP 271 (472)
Q Consensus 202 ~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~----------~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~ 271 (472)
.+..-+..+++|+.|++.+|...+.+... ..+++|+.|.+++|.. ..+ +
T Consensus 141 --~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l--~~l-----------------p 199 (328)
T 4fcg_A 141 --ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSL-----------------P 199 (328)
T ss_dssp --CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC--CCC-----------------C
T ss_pred --cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc--Ccc-----------------h
Confidence 34445788999999999998765543210 1134555555555542 110 1
Q ss_pred EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCc
Q 038350 272 FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLER 351 (472)
Q Consensus 272 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 351 (472)
-.+.++++|+.+++..+.... +...+..+++|++|+++++.+. +..| ..+..+.+|+.|.+..+...
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~~-------l~~~l~~l~~L~~L~Ls~n~~~-----~~~p-~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLSA-------LGPAIHHLPKLEELDLRGCTAL-----RNYP-PIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCCC-------CCGGGGGCTTCCEEECTTCTTC-----CBCC-CCTTCCCCCCEEECTTCTTC
T ss_pred HhhcCCCCCCEEEccCCCCCc-------CchhhccCCCCCEEECcCCcch-----hhhH-HHhcCCCCCCEEECCCCCch
Confidence 124455566666555332111 1223566777888887765432 2233 44556677777777653211
Q ss_pred hhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 352 FELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 352 ~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
. .++.-+..+++|+.|+|+.+.
T Consensus 267 ~---~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 267 L---TLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp C---BCCTTGGGCTTCCEEECTTCT
T ss_pred h---hcchhhhcCCCCCEEeCCCCC
Confidence 1 223335677888888877764
No 5
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=8.4e-11 Score=114.57 Aligned_cols=262 Identities=17% Similarity=0.154 Sum_probs=171.3
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCc-ccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPH-FFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM 205 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l 205 (472)
+.+++|.+.. +....+|. .+..+. +|++|+|+++.+. +..+.++++|++|+|+++.++. -.
T Consensus 52 ~~L~~L~l~~-------------n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~ 116 (353)
T 2z80_A 52 EAVKSLDLSN-------------NRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LS 116 (353)
T ss_dssp TTCCEEECTT-------------SCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CC
T ss_pred ccCcEEECCC-------------CcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CC
Confidence 4677777642 22334554 455566 9999999998665 4568999999999999998872 12
Q ss_pred HHHHhcCCCcceEeecccCCceeEE---EeeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeec----eEee
Q 038350 206 ENIAHNCPFLETLSLVECYRIFKVE---ITLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMV----PFDM 274 (472)
Q Consensus 206 ~~l~~~cp~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~----~~~~ 274 (472)
...+.++++|+.|++.++. +..+. ....+++|+.|.+++|. ....+. ...++|++|.+++... +-.+
T Consensus 117 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp HHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred HhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 2346789999999999874 23332 23456799999999985 223321 2367899999987422 2346
Q ss_pred cCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecc-cCchh
Q 038350 275 RGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG-LERFE 353 (472)
Q Consensus 275 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~ 353 (472)
.++++|+.+++...... .....++..+++|+.|+++++.+..... ... ........++.+.+... .....
T Consensus 195 ~~l~~L~~L~l~~n~l~------~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l--~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHI------LLLEIFVDVTSSVECLELRDTDLDTFHF-SEL--STGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp TTCSEEEEEEEECSCST------THHHHHHHHTTTEEEEEEESCBCTTCCC-C--------CCCCCCEEEEESCBCCHHH
T ss_pred hccccCCeecCCCCccc------cchhhhhhhcccccEEECCCCccccccc-ccc--ccccccchhhccccccccccCcc
Confidence 67888999888754321 1233455678999999999887654322 111 11233566788888743 34455
Q ss_pred HHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHHhcC
Q 038350 354 LAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLLRNS 431 (472)
Q Consensus 354 ~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~~~ 431 (472)
...++..+..+++|+.|+++.+.....++ ..+ ..+++|+.+.+.+ +.+....+..+...+++.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----------~~~-----~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~ 330 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPD----------GIF-----DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 330 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCT----------TTT-----TTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCH----------HHH-----hcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhc
Confidence 66778889999999999999885432220 000 1557899999987 566655566665555544
Q ss_pred c
Q 038350 432 R 432 (472)
Q Consensus 432 ~ 432 (472)
.
T Consensus 331 ~ 331 (353)
T 2z80_A 331 S 331 (353)
T ss_dssp T
T ss_pred c
Confidence 3
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.17 E-value=2.4e-11 Score=118.00 Aligned_cols=236 Identities=13% Similarity=0.063 Sum_probs=130.4
Q ss_pred cccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeE
Q 038350 162 FYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRK 240 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~ 240 (472)
+..+. +|++|+|++|.+.. +.+.++++|++|++.++.+.+ +.. +..+++|+.|++.+|.....+.....+++|+.
T Consensus 84 ~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD--ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC--CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC--chh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 33444 67777776665542 345666777777776666552 111 55667777777776654444333334557777
Q ss_pred EEEeeccC-CceeEEEeCCCeeEEEEeeeec-eE-eecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEec
Q 038350 241 LIVRHCQS-LSLGIELWLPRLQYFEYAGKMV-PF-DMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVST 317 (472)
Q Consensus 241 L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~-~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~ 317 (472)
|.+.+|.. .... ....++|++|.+++... .+ .+..+++|+.+++........ ..+..+++|++|++++
T Consensus 160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI--------TPVANMTRLNSLKIGN 230 (347)
T ss_dssp EECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCCEEECCS
T ss_pred EEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC--------chhhcCCcCCEEEccC
Confidence 77776653 1111 12456677777665321 11 145566666666553321111 1156677777777776
Q ss_pred ccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccc
Q 038350 318 SALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWT 397 (472)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~ 397 (472)
+.+... + .+..+.+|+.|.+..+.-.. + ..+..+|+|+.|+++.+.....
T Consensus 231 n~l~~~------~--~~~~l~~L~~L~l~~n~l~~----~-~~~~~l~~L~~L~l~~n~l~~~----------------- 280 (347)
T 4fmz_A 231 NKITDL------S--PLANLSQLTWLEIGTNQISD----I-NAVKDLTKLKMLNVGSNQISDI----------------- 280 (347)
T ss_dssp SCCCCC------G--GGTTCTTCCEEECCSSCCCC----C-GGGTTCTTCCEEECCSSCCCCC-----------------
T ss_pred CccCCC------c--chhcCCCCCEEECCCCccCC----C-hhHhcCCCcCEEEccCCccCCC-----------------
Confidence 654322 1 14456677777776542111 1 2356778888887776632110
Q ss_pred cccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350 398 TNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR 444 (472)
Q Consensus 398 ~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~ 444 (472)
.....+++|+.+.+.+..-+.... ..+.+.++|+.+.++....
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEECCSSSC
T ss_pred hhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEccCCcc
Confidence 011156788888887753332221 2345688899888876654
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.15 E-value=3e-11 Score=116.57 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=145.9
Q ss_pred eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-EeeCCCCeeEEEEe
Q 038350 168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-ITLRTLGLRKLIVR 244 (472)
Q Consensus 168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~l~ 244 (472)
++++|+|+++.+. |+.+..+++|++|+|+++.+. .+...+..+++|+.|++.+|.- ..+. ....+++|+.|.++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECC
Confidence 8999999999876 455788999999999999887 3444567899999999998853 3221 12345799999999
Q ss_pred eccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccc
Q 038350 245 HCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFP 324 (472)
Q Consensus 245 ~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~ 324 (472)
+|.. ...+. ..+....+.+ .+.++++|+.+++....-. .++..+..+++|++|+++.+.+..+
T Consensus 159 ~n~~-~~~~p---~~~~~~~~~~-----~~~~l~~L~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~N~l~~l- 221 (328)
T 4fcg_A 159 ACPE-LTELP---EPLASTDASG-----EHQGLVNLQSLRLEWTGIR-------SLPASIANLQNLKSLKIRNSPLSAL- 221 (328)
T ss_dssp EETT-CCCCC---SCSEEEC-CC-----CEEESTTCCEEEEEEECCC-------CCCGGGGGCTTCCEEEEESSCCCCC-
T ss_pred CCCC-ccccC---hhHhhccchh-----hhccCCCCCEEECcCCCcC-------cchHhhcCCCCCCEEEccCCCCCcC-
Confidence 9863 11110 0111111111 2345667777777654322 1234477899999999998876532
Q ss_pred cccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCccccccccccccc
Q 038350 325 TECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILD 404 (472)
Q Consensus 325 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 404 (472)
| ..+..+.+|+.|++..+.-.. .++..+..+++|+.|+|..+...... ......++
T Consensus 222 -----~-~~l~~l~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~n~~~~~~---------------p~~~~~l~ 277 (328)
T 4fcg_A 222 -----G-PAIHHLPKLEELDLRGCTALR---NYPPIFGGRAPLKRLILKDCSNLLTL---------------PLDIHRLT 277 (328)
T ss_dssp -----C-GGGGGCTTCCEEECTTCTTCC---BCCCCTTCCCCCCEEECTTCTTCCBC---------------CTTGGGCT
T ss_pred -----c-hhhccCCCCCEEECcCCcchh---hhHHHhcCCCCCCEEECCCCCchhhc---------------chhhhcCC
Confidence 2 335668899999997642211 23445788999999999887422110 00112668
Q ss_pred CccEEEEEee--ecChhhHHHHHHHHhcCccceEEEEee
Q 038350 405 HLECVQFEGF--TGKICEIDLVKFLLRNSRSIKELNIKQ 441 (472)
Q Consensus 405 ~L~~v~i~~f--~g~~~e~~~~~~ll~~~~~L~~l~i~~ 441 (472)
+|+.+.+.+. .+.-.+ -+.+.+.|+.+.+..
T Consensus 278 ~L~~L~L~~n~~~~~iP~------~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPS------LIAQLPANCIILVPP 310 (328)
T ss_dssp TCCEEECTTCTTCCCCCG------GGGGSCTTCEEECCG
T ss_pred CCCEEeCCCCCchhhccH------HHhhccCceEEeCCH
Confidence 9999999873 343222 245788899887763
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.14 E-value=6.3e-11 Score=123.66 Aligned_cols=234 Identities=12% Similarity=0.029 Sum_probs=116.5
Q ss_pred CCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE-EEeeCCCCeeEEEEee----------ccC-C---
Q 038350 185 VNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV-EITLRTLGLRKLIVRH----------CQS-L--- 249 (472)
Q Consensus 185 ~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~----------c~~-~--- 249 (472)
..+++|++|+|++|.+++..+..++.+||+|+.|++..+.....+ .+...+++|++|.+.+ |.. .
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 567778888887777777777677777888888877744221111 1122345777777774 542 1
Q ss_pred ceeEEEeCCCeeEEEEeeeec-e---Eeec-CCCceeEEEEEEeec-ccccC--chhhHHhhcccCCCCcEEEEeccccc
Q 038350 250 SLGIELWLPRLQYFEYAGKMV-P---FDMR-GMDDLEVVVLDYRLD-TRYSY--NGDDIESLFNPFSDARILQVSTSALK 321 (472)
Q Consensus 250 ~~~~~i~~p~L~~L~l~~~~~-~---~~~~-~~~~L~~l~l~~~~~-~~~~~--~~~~~~~ll~~l~~L~~L~l~~~~~~ 321 (472)
...+.-.+|+|++|.+.+... . ..+. .+++|+.+++..... ....+ ....+..++.++++|++|+++.+.-.
T Consensus 370 ~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~ 449 (592)
T 3ogk_B 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449 (592)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence 111122367777777743211 0 1122 366777776654220 00000 01135555666777777777432100
Q ss_pred ccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccc
Q 038350 322 IFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGS 401 (472)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 401 (472)
+.. .........+++|+.|.+..+. ....++..+++.||+|++|+|+.+.- .+ ....+. ..
T Consensus 450 -l~~--~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~L~~L~l~~n~l---~~---------~~~~~~--~~ 510 (592)
T 3ogk_B 450 -LTD--LGLSYIGQYSPNVRWMLLGYVG--ESDEGLMEFSRGCPNLQKLEMRGCCF---SE---------RAIAAA--VT 510 (592)
T ss_dssp -CCH--HHHHHHHHSCTTCCEEEECSCC--SSHHHHHHHHTCCTTCCEEEEESCCC---BH---------HHHHHH--HH
T ss_pred -ccH--HHHHHHHHhCccceEeeccCCC--CCHHHHHHHHhcCcccCeeeccCCCC---cH---------HHHHHH--HH
Confidence 000 0000001225567777775431 22335666677777777777777631 10 000000 00
Q ss_pred cccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350 402 ILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK 440 (472)
Q Consensus 402 ~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~ 440 (472)
.+++|+.+.+.+..-+... ++.+.+..+.|+...|.
T Consensus 511 ~l~~L~~L~ls~n~it~~~---~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMTG---QDLMQMARPYWNIELIP 546 (592)
T ss_dssp HCSSCCEEEEESCBCCTTC---TTGGGGCCTTEEEEEEC
T ss_pred hcCccCeeECcCCcCCHHH---HHHHHHhCCCcEEEEec
Confidence 4567777777665433322 22344455666555443
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=1.3e-11 Score=128.78 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=105.2
Q ss_pred cCCceEEEEEEeeeeecCC---CCC-CcccccEEEeeeE-EeChHHHHHHHhcCCCcceEeecccCCceeE------EEe
Q 038350 164 EQGMCIRVLNINSCGLGLC---NFV-NFIQLTSLALTRV-RLSWAAMENIAHNCPFLETLSLVECYRIFKV------EIT 232 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~l~~~---~~~-~~~~L~~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l------~i~ 232 (472)
.+. +|++|+|++|.+... .+. .+++|++|+|.+| .+++..+..++.+||+|++|++.+|. +... .+.
T Consensus 103 ~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYT-WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HCT-TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred hCC-CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 355 777777777665421 122 5677777777776 56666677777777777777777765 2211 112
Q ss_pred eCCCCeeEEEEeecc--C---CceeEEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecc------------
Q 038350 233 LRTLGLRKLIVRHCQ--S---LSLGIELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDT------------ 291 (472)
Q Consensus 233 ~~~~~L~~L~l~~c~--~---~~~~~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~------------ 291 (472)
..+++|++|.+++|. . .+..+...+|+|++|++.+... +..+..+++|+++++..+...
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 234577777776664 1 1111222356666666654310 112233445555443221100
Q ss_pred -----------cccC-chhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHH
Q 038350 292 -----------RYSY-NGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIIC 359 (472)
Q Consensus 292 -----------~~~~-~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ 359 (472)
.+.. ....+..++..+++|++|+++.+.+... ... ..+..+++|++|.+..+. ...++..
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~----~l~-~~~~~~~~L~~L~l~~~~---~~~~l~~ 332 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY----DLV-KLLCQCPKLQRLWVLDYI---EDAGLEV 332 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH----HHH-HHHTTCTTCCEEEEEGGG---HHHHHHH
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH----HHH-HHHhcCCCcCEEeCcCcc---CHHHHHH
Confidence 0000 1123344445566777777765542210 001 112346677777776542 2345666
Q ss_pred HHhcCCCcceEEEEeC
Q 038350 360 LLISSPNITTLAISTG 375 (472)
Q Consensus 360 ll~~~p~L~~L~i~~~ 375 (472)
+.+.||+|++|+|..+
T Consensus 333 l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 333 LASTCKDLRELRVFPS 348 (594)
T ss_dssp HHHHCTTCCEEEEECS
T ss_pred HHHhCCCCCEEEEecC
Confidence 6677777777777553
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=118.34 Aligned_cols=260 Identities=15% Similarity=0.063 Sum_probs=131.1
Q ss_pred ccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE-EEeeCCC
Q 038350 161 FFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV-EITLRTL 236 (472)
Q Consensus 161 ~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~ 236 (472)
.+..+. +|++|+|+++.+. +..+.++++|++|+|.++.++.- ....+.++++|+.|++.++.-.... .....++
T Consensus 51 ~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 51 EFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 344455 7777777776543 45567777777777777666511 1123456777777777766422111 0112345
Q ss_pred CeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeec-e---EeecCCCceeEEEEEEeecccccCchhhHHhhcccCC
Q 038350 237 GLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMV-P---FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS 308 (472)
Q Consensus 237 ~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~-~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~ 308 (472)
+|+.|.+.++.. ..+. ...++|++|.+.+... . -.+.++++|+.+++........ ....+..++
T Consensus 129 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~------~~~~~~~l~ 200 (477)
T 2id5_A 129 NLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI------RDYSFKRLY 200 (477)
T ss_dssp TCCEEEECCTTC--CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE------CTTCSCSCT
T ss_pred cCCEEECCCCcc--ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe------ChhhcccCc
Confidence 777777777642 1111 1346777777765321 1 1245667777776664322111 112355667
Q ss_pred CCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCC
Q 038350 309 DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYF 388 (472)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~ 388 (472)
+|+.|+++.+... ...+ .......+|+.|.+..+.-.. .-...+..+++|+.|+++.+.....+. ....
T Consensus 201 ~L~~L~l~~~~~~-----~~~~-~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~ 269 (477)
T 2id5_A 201 RLKVLEISHWPYL-----DTMT-PNCLYGLNLTSLSITHCNLTA---VPYLAVRHLVYLRFLNLSYNPISTIEG--SMLH 269 (477)
T ss_dssp TCCEEEEECCTTC-----CEEC-TTTTTTCCCSEEEEESSCCCS---CCHHHHTTCTTCCEEECCSSCCCEECT--TSCT
T ss_pred ccceeeCCCCccc-----cccC-cccccCccccEEECcCCcccc---cCHHHhcCccccCeeECCCCcCCccCh--hhcc
Confidence 7777777654221 1122 222233467777776432111 111245667777777776654221110 0000
Q ss_pred CCCc-cccc-----cc-----ccccccCccEEEEEee--ecChhhHHHHHHHHhcCccceEEEEeeccccCc
Q 038350 389 PLSR-GEIW-----TT-----NGSILDHLECVQFEGF--TGKICEIDLVKFLLRNSRSIKELNIKQLIRATS 447 (472)
Q Consensus 389 ~~~~-~~~w-----~~-----~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~~~~ 447 (472)
.+.. .... .. ....+++|+.+.+.+- .+... ..+.+.++|+.+.+....-..+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE------SVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG------GGBSCGGGCCEEECCSSCEECS
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH------hHcCCCcccCEEEccCCCccCc
Confidence 0000 0000 00 0015578888888652 22221 2346778999998876654433
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.03 E-value=1.4e-10 Score=117.01 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=49.8
Q ss_pred cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHH-HHHhcCCCcceEeecccCCceeEE--EeeCC
Q 038350 162 FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAME-NIAHNCPFLETLSLVECYRIFKVE--ITLRT 235 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~-~l~~~cp~Le~L~l~~c~~~~~l~--i~~~~ 235 (472)
+..+. +|++|+|+++.+. |..+.++++|++|+|.++.+++.... ..+..+++|+.|++.++.-.+... +...+
T Consensus 75 ~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 75 FRGLS-SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTCT-TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred ccccc-cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 33444 7777777776543 45567777777777777776643222 235567777777777664221111 12234
Q ss_pred CCeeEEEEeecc
Q 038350 236 LGLRKLIVRHCQ 247 (472)
Q Consensus 236 ~~L~~L~l~~c~ 247 (472)
++|+.|.++++.
T Consensus 154 ~~L~~L~L~~n~ 165 (455)
T 3v47_A 154 RRFHVLDLTFNK 165 (455)
T ss_dssp TTCCEEECTTCC
T ss_pred CcccEEeCCCCc
Confidence 577777776654
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.01 E-value=5.8e-11 Score=120.64 Aligned_cols=235 Identities=13% Similarity=0.100 Sum_probs=119.6
Q ss_pred CcccccCCceEEEEEEeeeeec--C-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE--Eee
Q 038350 159 PHFFYEQGMCIRVLNINSCGLG--L-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE--ITL 233 (472)
Q Consensus 159 p~~~~~~~~~L~~L~L~~~~l~--~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~--i~~ 233 (472)
|..+..+. +|++|+|+++.+. + ..+.++++|++|+|+++.+... ....+..+++|+.|++.++.- ..+. ...
T Consensus 73 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~ 149 (477)
T 2id5_A 73 PGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDL-VYISHRAFS 149 (477)
T ss_dssp TTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTC-CEECTTSST
T ss_pred hhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCcc-ceeChhhcc
Confidence 34444455 7777777777554 2 2356777777777777655411 112245677777777776542 2211 112
Q ss_pred CCCCeeEEEEeeccCC-cee-EEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeeccccc-------------
Q 038350 234 RTLGLRKLIVRHCQSL-SLG-IELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYS------------- 294 (472)
Q Consensus 234 ~~~~L~~L~l~~c~~~-~~~-~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~------------- 294 (472)
.+++|+.|.+.+|... ... .-...++|+.|.+.+... ...+..+++|+.+++..+......
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 3456777777666431 000 011345666666654211 123344555555555432110000
Q ss_pred -----CchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcce
Q 038350 295 -----YNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITT 369 (472)
Q Consensus 295 -----~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~ 369 (472)
.-.......+..+++|+.|+++.+.+..+. + ..+..+.+|+.|.+..+.-.. ..+..+..+++|+.
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-----G-SMLHELLRLQEIQLVGGQLAV---VEPYAFRGLNYLRV 300 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-----T-TSCTTCTTCCEEECCSSCCSE---ECTTTBTTCTTCCE
T ss_pred ECcCCcccccCHHHhcCccccCeeECCCCcCCccC-----h-hhccccccCCEEECCCCccce---ECHHHhcCcccCCE
Confidence 000011234556777777777766544221 1 334556777777776432111 11224567788888
Q ss_pred EEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhh
Q 038350 370 LAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICE 420 (472)
Q Consensus 370 L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e 420 (472)
|+|+.+.....+ +..+ ..+.+|+.|.+.+ +.+....
T Consensus 301 L~L~~N~l~~~~----------~~~~-----~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 301 LNVSGNQLTTLE----------ESVF-----HSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp EECCSSCCSCCC----------GGGB-----SCGGGCCEEECCSSCEECSGGG
T ss_pred EECCCCcCceeC----------HhHc-----CCCcccCEEEccCCCccCccch
Confidence 888776432211 0111 1557899999876 5555443
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.99 E-value=1.1e-10 Score=111.30 Aligned_cols=242 Identities=17% Similarity=0.125 Sum_probs=153.3
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec--CC-CCCCcccccEEEeeeEEeChH-HHHHHHhcCCCcceEeecccCCceeE
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG--LC-NFVNFIQLTSLALTRVRLSWA-AMENIAHNCPFLETLSLVECYRIFKV 229 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~~~~l 229 (472)
....+|..+. . +|++|+|+++.+. +. .+.++++|++|+|.++.++.. .....+.+++.|+.|++.++.- ..+
T Consensus 18 ~l~~ip~~~~--~-~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l 93 (306)
T 2z66_A 18 GLTSVPTGIP--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITM 93 (306)
T ss_dssp CCSSCCSCCC--T-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEE
T ss_pred CcccCCCCCC--C-CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccC
Confidence 3445666542 3 8999999998776 33 368999999999999877621 1112245799999999998863 333
Q ss_pred -EEeeCCCCeeEEEEeeccC-Cce--eEEEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHH
Q 038350 230 -EITLRTLGLRKLIVRHCQS-LSL--GIELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIE 301 (472)
Q Consensus 230 -~i~~~~~~L~~L~l~~c~~-~~~--~~~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 301 (472)
.....+++|+.|.++++.. ... ......++|++|.+++... .-.+.++++|+.+++....... ....
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~ 168 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-----NFLP 168 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-----GEEC
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-----ccch
Confidence 2234567999999988753 111 1122467899999877432 1235677889988876432211 0133
Q ss_pred hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCC
Q 038350 302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP 381 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~ 381 (472)
..+..+++|++|+++++.+..+ .+ ..+..+.+|+.|.+..+.-.. .....+..+++|+.|+++.+......
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~-----~~-~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQL-----SP-TAFNSLSSLQVLNMSHNNFFS---LDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEE-----CT-TTTTTCTTCCEEECTTSCCSB---CCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred hHHhhCcCCCEEECCCCCcCCc-----CH-HHhcCCCCCCEEECCCCccCc---cChhhccCcccCCEeECCCCCCcccC
Confidence 4567889999999988765532 12 445667889999987542111 00112577899999999887432111
Q ss_pred CCCCCCCCCCcccccccccccc-cCccEEEEEe--eecChhhHHHHHHHH
Q 038350 382 DFRPNYFPLSRGEIWTTNGSIL-DHLECVQFEG--FTGKICEIDLVKFLL 428 (472)
Q Consensus 382 ~~~~~~~~~~~~~~w~~~~~~~-~~L~~v~i~~--f~g~~~e~~~~~~ll 428 (472)
+.. ...+ .+|+.+.+.| +.+......+.+++-
T Consensus 240 ----------~~~-----~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 240 ----------KQE-----LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp ----------SSS-----CCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred ----------HHH-----HHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 000 0122 4889999876 666666556666543
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.99 E-value=4.8e-11 Score=125.02 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=42.1
Q ss_pred eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEE
Q 038350 168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIV 243 (472)
Q Consensus 168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l 243 (472)
+|++|+++++.+. |..+.++++|++|++.++.+... ....+..+|.|+.|++.+|.....+.. ...+++|+.|.+
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 6677776666554 34456666677777666655521 112345566666666666543222111 122345666666
Q ss_pred eecc
Q 038350 244 RHCQ 247 (472)
Q Consensus 244 ~~c~ 247 (472)
++|.
T Consensus 358 ~~n~ 361 (606)
T 3t6q_A 358 SHDD 361 (606)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5554
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.98 E-value=7.2e-09 Score=106.97 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=141.0
Q ss_pred CcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---EEe
Q 038350 159 PHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---EIT 232 (472)
Q Consensus 159 p~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~ 232 (472)
|..+..+. +|++|+|+++.+. +..+.++++|++|+|+++.+.+- ....+.++++|+.|++.++.- ..+ ...
T Consensus 43 ~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~ 119 (549)
T 2z81_A 43 HGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPY-QTLGVTSLF 119 (549)
T ss_dssp SSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCC-SSSCSSCSC
T ss_pred hhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcc-cccchhhhh
Confidence 44555666 9999999998665 45689999999999999988732 223467899999999998853 222 223
Q ss_pred eCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhc
Q 038350 233 LRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLF 304 (472)
Q Consensus 233 ~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll 304 (472)
..+++|+.|.+++|.. ...+. ...++|++|.+++... +-.+..+++|+.+++...... .....++
T Consensus 120 ~~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------~~~~~~~ 192 (549)
T 2z81_A 120 PNLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA------FLLEIFA 192 (549)
T ss_dssp TTCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST------THHHHHH
T ss_pred hccCCccEEECCCCcc-ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc------ccchhhH
Confidence 4567999999999862 22221 2367899999987422 234567788888888754321 1223445
Q ss_pred ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350 305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGAI 377 (472)
Q Consensus 305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~~ 377 (472)
..+++|++|+++.+.+..... .+......+.+|+.|.+..+. .......+...+..+++|+.|++..+..
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQF---SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCC---CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred hhcccccEEEccCCccccccc---cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 678999999999886653321 110112346789999998542 2334556777788999999999988753
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.98 E-value=1.3e-10 Score=117.23 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=50.7
Q ss_pred CcccccCCceEEEEEEeeeeec---CC--CCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 159 PHFFYEQGMCIRVLNINSCGLG---LC--NFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 159 p~~~~~~~~~L~~L~L~~~~l~---~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
|..+..+. +|++|+|++|.+. +. .+..+++|++|+|+++.+.......++.++++|+.|++.++.
T Consensus 96 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 96 TGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred hhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 55555666 9999999999775 22 378899999999999988743233447889999999999874
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.98 E-value=4.2e-10 Score=113.96 Aligned_cols=250 Identities=14% Similarity=0.096 Sum_probs=132.8
Q ss_pred cCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCC
Q 038350 157 VLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRT 235 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~ 235 (472)
.+|. +..+. +|++|+|+++.+.. +.+.++++|++|++.++.+.+- .. +.++++|+.|++.+|. +..+.....+
T Consensus 60 ~l~~-~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l 133 (466)
T 1o6v_A 60 SIDG-VEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQ-ITDIDPLKNL 133 (466)
T ss_dssp CCTT-GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCCGGGTTC
T ss_pred cCcc-hhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCC-CCCChHHcCC
Confidence 3443 44456 88888888887652 2277888888888888877622 12 7788888888888874 3332223445
Q ss_pred CCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeece-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEE
Q 038350 236 LGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMVP-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARIL 313 (472)
Q Consensus 236 ~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L 313 (472)
++|+.|.+++|.. .... ....++|++|.+.+.... ..+.++++|+.+++..+..... ..+..+++|++|
T Consensus 134 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L 204 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--------SVLAKLTNLESL 204 (466)
T ss_dssp TTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEE
T ss_pred CCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--------hhhccCCCCCEE
Confidence 6888888888753 1111 123567777777543221 1255677777776654321110 124566667777
Q ss_pred EEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCC--CCCC----
Q 038350 314 QVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDF--RPNY---- 387 (472)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~--~~~~---- 387 (472)
.++.+.+.... ++..+.+|+.|.+..+.-.. + ..+..+|+|+.|+++.+.....+.. ....
T Consensus 205 ~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~----~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 271 (466)
T 1o6v_A 205 IATNNQISDIT--------PLGILTNLDELSLNGNQLKD----I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271 (466)
T ss_dssp ECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCC----C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred EecCCcccccc--------cccccCCCCEEECCCCCccc----c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence 77655433211 12234555555554321110 0 1234555555555554432111100 0000
Q ss_pred ---CCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350 388 ---FPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR 444 (472)
Q Consensus 388 ---~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~ 444 (472)
+.+.. ......+++|+.+.+.+-.-..-. . +.+.++|+.+.++....
T Consensus 272 l~~n~l~~----~~~~~~l~~L~~L~L~~n~l~~~~--~----~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 272 LGANQISN----ISPLAGLTALTNLELNENQLEDIS--P----ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp CCSSCCCC----CGGGTTCTTCSEEECCSSCCSCCG--G----GGGCTTCSEEECCSSCC
T ss_pred CCCCccCc----cccccCCCccCeEEcCCCcccCch--h----hcCCCCCCEEECcCCcC
Confidence 00000 000115577888888763222111 1 56788999988876654
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.98 E-value=5.2e-10 Score=116.06 Aligned_cols=195 Identities=14% Similarity=0.073 Sum_probs=91.4
Q ss_pred CcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCC
Q 038350 159 PHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTL 236 (472)
Q Consensus 159 p~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~ 236 (472)
|..+..+. +|++|++.++.+. |..+..+ +|++|++.++.+. .+.. ..++.|+.|.+.++.....+.. ..++
T Consensus 275 ~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~ 347 (570)
T 2z63_A 275 IDLFNCLT-NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLP 347 (570)
T ss_dssp TTTTGGGT-TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCT
T ss_pred hhhhcCcC-cccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCcccccccc-ccCC
Confidence 33333444 6777777766554 2334455 6677776666554 1111 3466666666666543322222 3345
Q ss_pred CeeEEEEeeccCCceeEE------EeCCCeeEEEEeeeec---eEeecCCCceeEEEEEEeecccccCchhhHHhhcccC
Q 038350 237 GLRKLIVRHCQSLSLGIE------LWLPRLQYFEYAGKMV---PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPF 307 (472)
Q Consensus 237 ~L~~L~l~~c~~~~~~~~------i~~p~L~~L~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l 307 (472)
+|+.|.+++|.. ..+. ...++|++|.+++... +..+.++++|+.+++........ .....+..+
T Consensus 348 ~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l 420 (570)
T 2z63_A 348 SLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-----SEFSVFLSL 420 (570)
T ss_dssp TCCEEECCSSCC--BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC-----TTSCTTTTC
T ss_pred CCCEEeCcCCcc--CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc-----cchhhhhcC
Confidence 666666666542 1111 1345666666654211 11255566666665543211100 001234455
Q ss_pred CCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 308 SDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
++|++|+++.+.+... .+ ..+..+.+|+.|.+..+.-. ...++..+..+|+|+.|+++.+
T Consensus 421 ~~L~~L~l~~n~l~~~-----~~-~~~~~l~~L~~L~l~~n~l~--~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 421 RNLIYLDISHTHTRVA-----FN-GIFNGLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp TTCCEEECTTSCCEEC-----CT-TTTTTCTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTS
T ss_pred CCCCEEeCcCCccccc-----ch-hhhhcCCcCcEEECcCCcCc--cccchhhhhcccCCCEEECCCC
Confidence 6666666655543211 11 23344555666655432100 0012234455666666666554
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.98 E-value=1.3e-10 Score=125.27 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=81.1
Q ss_pred CCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccC
Q 038350 257 LPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGR 332 (472)
Q Consensus 257 ~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 332 (472)
.++|++|.+.+... +-.+.++++|+.+++..+.... ..+..+..+++|+.|++..+.+. +..| .
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~L~~n~l~-----~~~p-~ 460 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG------TIPSSLGSLSKLRDLKLWLNMLE-----GEIP-Q 460 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCC-----SCCC-G
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC------cccHHHhcCCCCCEEECCCCccc-----CcCC-H
Confidence 34566666654321 1234556666666665432111 12234566677777777666543 2223 3
Q ss_pred CCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEE
Q 038350 333 QLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFE 412 (472)
Q Consensus 333 ~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~ 412 (472)
.+..+.+|+.|.+..+.-.. .++..+..+++|+.|+++.+...... + .|. ..+++|+++.+.
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~----------p--~~~---~~l~~L~~L~L~ 522 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTG---EIPSGLSNCTNLNWISLSNNRLTGEI----------P--KWI---GRLENLAILKLS 522 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCCSCC----------C--GGG---GGCTTCCEEECC
T ss_pred HHcCCCCceEEEecCCcccC---cCCHHHhcCCCCCEEEccCCccCCcC----------C--hHH---hcCCCCCEEECC
Confidence 34556777777776442111 23344677788888888776422110 0 111 145688888887
Q ss_pred e--eecChhhHHHHHHHHhcCccceEEEEeecc
Q 038350 413 G--FTGKICEIDLVKFLLRNSRSIKELNIKQLI 443 (472)
Q Consensus 413 ~--f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~ 443 (472)
+ +.|...+ -+.+.++|+.+.+....
T Consensus 523 ~N~l~~~~p~------~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 523 NNSFSGNIPA------ELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SSCCEEECCG------GGGGCTTCCEEECCSSE
T ss_pred CCcccCcCCH------HHcCCCCCCEEECCCCc
Confidence 6 3332221 24567888888887554
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.97 E-value=3.2e-10 Score=113.93 Aligned_cols=236 Identities=14% Similarity=0.129 Sum_probs=150.1
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE 230 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~ 230 (472)
....+|..+. . ++++|+|+++.+. +..+.++++|++|+|+++.+..-. ...+.++++|+.|+|.++. +..+.
T Consensus 54 ~l~~iP~~~~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~ 128 (440)
T 3zyj_A 54 NLREVPDGIS--T-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR-LTTIP 128 (440)
T ss_dssp CCSSCCSCCC--T-TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-CSSCC
T ss_pred CcCcCCCCCC--C-CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-CCeeC
Confidence 3445666553 3 7899999988665 466899999999999988776211 1236789999999999874 33332
Q ss_pred E--eeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeee-----ceEeecCCCceeEEEEEEeecccccCchhh
Q 038350 231 I--TLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKM-----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDD 299 (472)
Q Consensus 231 i--~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 299 (472)
- ...+++|+.|.++++.. ..+. -..++|++|++.+.. ..-.+.++++|+.+++..+.....
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i--~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------ 200 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------ 200 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCC--CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------
T ss_pred HhHhhccccCceeeCCCCcc--cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------
Confidence 1 23456999999998863 3222 146789999987621 112356788888887764432211
Q ss_pred HHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccC
Q 038350 300 IESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMH 379 (472)
Q Consensus 300 ~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~ 379 (472)
.-+..+++|+.|+++++.+..+ .+ ..+..+.+|+.|.+..+.-.. .....+..+++|+.|+|+.+....
T Consensus 201 --~~~~~l~~L~~L~Ls~N~l~~~-----~~-~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 201 --PNLTPLIKLDELDLSGNHLSAI-----RP-GSFQGLMHLQKLWMIQSQIQV---IERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp --CCCTTCSSCCEEECTTSCCCEE-----CT-TTTTTCTTCCEEECTTCCCCE---ECTTSSTTCTTCCEEECTTSCCCC
T ss_pred --cccCCCcccCEEECCCCccCcc-----Ch-hhhccCccCCEEECCCCceeE---EChhhhcCCCCCCEEECCCCCCCc
Confidence 1256788899999988765532 22 455677888888886542111 112346778999999998874332
Q ss_pred CCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHH
Q 038350 380 TPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLL 428 (472)
Q Consensus 380 ~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll 428 (472)
.+ . .. ...+.+|+.|.+.+ +........+..++-
T Consensus 270 ~~---~-------~~-----~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 270 LP---H-------DL-----FTPLHHLERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CC---T-------TT-----TSSCTTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred cC---h-------hH-----hccccCCCEEEcCCCCccCCCCchHHHHHHH
Confidence 22 0 00 01457888888876 555555545554443
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.97 E-value=2e-09 Score=104.77 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=107.0
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE 230 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~ 230 (472)
....+|..++ . +|++|+|+++.+. +..+.++++|++|+|.++.+++- ....+.++++|+.|++.++. +..+.
T Consensus 42 ~l~~iP~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~ 116 (353)
T 2z80_A 42 SLNSIPSGLT--E-AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNY-LSNLS 116 (353)
T ss_dssp TCSSCCTTCC--T-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CSSCC
T ss_pred Cccccccccc--c-cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCc-CCcCC
Confidence 4456676553 3 7999999988665 34678999999999998877621 11236778999999999875 22222
Q ss_pred E--eeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCC
Q 038350 231 I--TLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS 308 (472)
Q Consensus 231 i--~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~ 308 (472)
. ...+++|+.|.++++.. ..+.. .-.+..+++|+.+++....... ......+..++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l--~~l~~---------------~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~l~ 174 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPY--KTLGE---------------TSLFSHLTKLQILRVGNMDTFT-----KIQRKDFAGLT 174 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCC--SSSCS---------------SCSCTTCTTCCEEEEEESSSCC-----EECTTTTTTCC
T ss_pred HhHhCCCccCCEEECCCCCC--cccCc---------------hhhhccCCCCcEEECCCCcccc-----ccCHHHccCCC
Confidence 1 12345777777777653 11100 0122334444444444321000 01112345667
Q ss_pred CCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 309 DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
+|++|+++++.+... .+ ..+..+.+|++|.+..+.-.. .-..++..+++|+.|+++.+.
T Consensus 175 ~L~~L~l~~n~l~~~-----~~-~~l~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 175 FLEELEIDASDLQSY-----EP-KSLKSIQNVSHLILHMKQHIL---LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEEEEEETTCCEE-----CT-TTTTTCSEEEEEEEECSCSTT---HHHHHHHHTTTEEEEEEESCB
T ss_pred CCCEEECCCCCcCcc-----CH-HHHhccccCCeecCCCCcccc---chhhhhhhcccccEEECCCCc
Confidence 777777776654321 22 344556677777776542211 112345567888888887764
No 22
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.96 E-value=2.8e-10 Score=109.87 Aligned_cols=208 Identities=13% Similarity=0.099 Sum_probs=122.3
Q ss_pred eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCcee-EEEeeCCCCeeEEEEe
Q 038350 168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK-VEITLRTLGLRKLIVR 244 (472)
Q Consensus 168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~l~ 244 (472)
++++|++.++.+. ++.+..+++|++|+|+++.+++..+..++.+||+|+.|++.+|.-.+. ...-+.+++|++|.++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 8999999988776 344678999999999999999888999999999999999999852211 1111235678888877
Q ss_pred eccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCC-CCcEEEEeccccccc
Q 038350 245 HCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS-DARILQVSTSALKIF 323 (472)
Q Consensus 245 ~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~-~L~~L~l~~~~~~~~ 323 (472)
+|.. ... ......+.++++|+.+++..+... ....+...+..++ +|++|+++++....
T Consensus 151 ~~~~-l~~---------------~~l~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~l~~~L~~L~l~~~~~~~- 209 (336)
T 2ast_B 151 GCSG-FSE---------------FALQTLLSSCSRLDELNLSWCFDF----TEKHVQVAVAHVSETITQLNLSGYRKNL- 209 (336)
T ss_dssp TCBS-CCH---------------HHHHHHHHHCTTCCEEECCCCTTC----CHHHHHHHHHHSCTTCCEEECCSCGGGS-
T ss_pred CCCC-CCH---------------HHHHHHHhcCCCCCEEcCCCCCCc----ChHHHHHHHHhcccCCCEEEeCCCcccC-
Confidence 7731 110 000011223444444444322100 1123566677888 88888887763211
Q ss_pred ccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccc
Q 038350 324 PTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSIL 403 (472)
Q Consensus 324 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 403 (472)
.. ...+ ..+..+++|+.|++..+.... . .....+..+|+|+.|++..+.. .. +.. ......+
T Consensus 210 ~~-~~l~-~~~~~~~~L~~L~l~~~~~l~-~-~~~~~l~~l~~L~~L~l~~~~~--~~----------~~~--~~~l~~~ 271 (336)
T 2ast_B 210 QK-SDLS-TLVRRCPNLVHLDLSDSVMLK-N-DCFQEFFQLNYLQHLSLSRCYD--II----------PET--LLELGEI 271 (336)
T ss_dssp CH-HHHH-HHHHHCTTCSEEECTTCTTCC-G-GGGGGGGGCTTCCEEECTTCTT--CC----------GGG--GGGGGGC
T ss_pred CH-HHHH-HHHhhCCCCCEEeCCCCCcCC-H-HHHHHHhCCCCCCEeeCCCCCC--CC----------HHH--HHHHhcC
Confidence 00 1112 223456788888886542110 1 1222456778888888877631 11 000 0011156
Q ss_pred cCccEEEEEee
Q 038350 404 DHLECVQFEGF 414 (472)
Q Consensus 404 ~~L~~v~i~~f 414 (472)
++|+.+.+.|.
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 78888888766
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.96 E-value=5.2e-10 Score=113.27 Aligned_cols=233 Identities=13% Similarity=0.063 Sum_probs=112.2
Q ss_pred cccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeC------
Q 038350 162 FYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLR------ 234 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~------ 234 (472)
+..+. +|++|+++++.+.. +.+.++++|++|+|.++.+++- .. +..+++|+.|++.+|. +..+.....
T Consensus 86 ~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hhccc-cCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 33444 66666666665441 1255666666666666555421 11 4556666666666553 111111112
Q ss_pred ---------------CCCeeEEEEeeccC-CceeEEEeCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCc
Q 038350 235 ---------------TLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYN 296 (472)
Q Consensus 235 ---------------~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~ 296 (472)
+++|+.|.+++|.. .... ....++|++|.+++... . ..++.+++|+.+++..+....
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---- 235 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---- 235 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc----
Confidence 33555555555432 1100 11234555555544211 0 113445555555554321110
Q ss_pred hhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 297 GDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 297 ~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
+ ..+..+++|+.|+++++.+... .++..+.+|+.|.+..+.-.. +.. +..+++|+.|+++.+.
T Consensus 236 ---~-~~l~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~l~~n~l~~----~~~-~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 236 ---I-GTLASLTNLTDLDLANNQISNL--------APLSGLTKLTELKLGANQISN----ISP-LAGLTALTNLELNENQ 298 (466)
T ss_dssp ---C-GGGGGCTTCSEEECCSSCCCCC--------GGGTTCTTCSEEECCSSCCCC----CGG-GTTCTTCSEEECCSSC
T ss_pred ---c-hhhhcCCCCCEEECCCCccccc--------hhhhcCCCCCEEECCCCccCc----ccc-ccCCCccCeEEcCCCc
Confidence 0 1244556666666655543321 113345666666665432111 111 5566777777776653
Q ss_pred ccCCCCCCCCCCCCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350 377 IMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLIR 444 (472)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~~ 444 (472)
....+ ....+++|+.+.+.+-.-+... . +...++|+++.+.....
T Consensus 299 l~~~~-----------------~~~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 299 LEDIS-----------------PISNLKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp CSCCG-----------------GGGGCTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSSCC
T ss_pred ccCch-----------------hhcCCCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCCcc
Confidence 21110 1126689999999774322111 1 46889999999986643
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.95 E-value=3.4e-10 Score=114.13 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=147.6
Q ss_pred cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI 231 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i 231 (472)
...+|..+. . ++++|+|+++.+. +..+.++++|++|+|+++.+..-. ...+.++++|+.|+|.++. +..+.-
T Consensus 66 l~~iP~~~~--~-~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~ 140 (452)
T 3zyi_A 66 LSEVPQGIP--S-NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW-LTVIPS 140 (452)
T ss_dssp CSSCCSCCC--T-TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CSBCCT
T ss_pred cCccCCCCC--C-CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCc-CCccCh
Confidence 345665442 3 7899999988664 566889999999999988776211 1236778999999999875 332221
Q ss_pred --eeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeee--ceE---eecCCCceeEEEEEEeecccccCchhhH
Q 038350 232 --TLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKM--VPF---DMRGMDDLEVVVLDYRLDTRYSYNGDDI 300 (472)
Q Consensus 232 --~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~--~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 300 (472)
...+++|+.|.++++.. ..+. ...|+|++|++.+.. ..+ .+.++++|+.++++.......
T Consensus 141 ~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------- 211 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------- 211 (452)
T ss_dssp TTSSSCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-------
T ss_pred hhhcccCCCCEEECCCCCc--ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-------
Confidence 22356899999988863 3322 146788888887621 112 356778888887764432211
Q ss_pred HhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCC
Q 038350 301 ESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHT 380 (472)
Q Consensus 301 ~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~ 380 (472)
.-+..+++|+.|+++++.+..+ .+ ..+..+.+|+.|.+..+.-.. .....+..+++|+.|+|+.+.....
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~-----~~-~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEI-----RP-GSFHGLSSLKKLWVMNSQVSL---IERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEE-----CG-GGGTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -ccccccccccEEECcCCcCccc-----Cc-ccccCccCCCEEEeCCCcCce---ECHHHhcCCCCCCEEECCCCcCCcc
Confidence 1256778899999988765532 22 445567788888886542111 1123467789999999988753322
Q ss_pred CCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHH
Q 038350 381 PDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLL 428 (472)
Q Consensus 381 ~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll 428 (472)
+ . ..+ ..+.+|+.+.+.+ +........+..++-
T Consensus 282 ~---~-------~~~-----~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 282 P---H-------DLF-----TPLRYLVELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp C---T-------TSS-----TTCTTCCEEECCSSCEECSTTTHHHHHHHH
T ss_pred C---h-------HHh-----ccccCCCEEEccCCCcCCCCCchHHHHHHH
Confidence 2 0 000 1457888888876 555555555554443
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.94 E-value=7.5e-11 Score=127.01 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=9.0
Q ss_pred HHhcCCCcceEEEEeC
Q 038350 360 LLISSPNITTLAISTG 375 (472)
Q Consensus 360 ll~~~p~L~~L~i~~~ 375 (472)
.+..+++|+.|++..+
T Consensus 313 ~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 313 FFGSCSLLESLALSSN 328 (768)
T ss_dssp GGGGCTTCCEEECCSS
T ss_pred HHhcCCCccEEECCCC
Confidence 3455566666665554
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.93 E-value=2.7e-10 Score=119.22 Aligned_cols=78 Identities=18% Similarity=0.076 Sum_probs=37.7
Q ss_pred eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE-EEeeCCCCeeEEEE
Q 038350 168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV-EITLRTLGLRKLIV 243 (472)
Q Consensus 168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l 243 (472)
+|++|++.++.+. +..+.++++|++|+++++.++ .+..-+.++++|+.|++.+|.-.+.. .....+++|+.|.+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 5666666655443 223455666666666655554 12222445566666666655321110 11122346666666
Q ss_pred eecc
Q 038350 244 RHCQ 247 (472)
Q Consensus 244 ~~c~ 247 (472)
.+|.
T Consensus 333 ~~n~ 336 (606)
T 3t6q_A 333 KGNT 336 (606)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 5553
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.93 E-value=3.7e-10 Score=109.59 Aligned_cols=274 Identities=13% Similarity=0.064 Sum_probs=158.1
Q ss_pred CCccEEEEEEEeCCCcchHhHHHHHHHHHHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeee
Q 038350 100 EFLTKFSFRLYYSSNIYRQNIDKWIEIVLEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGL 179 (472)
Q Consensus 100 ~~l~~l~l~~~~~~~~~~~~i~~wl~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l 179 (472)
+.++.+.+....... ... ....+.++.|.+... ....+| .+..+. +|++|+++++.+
T Consensus 66 ~~L~~L~l~~n~i~~--~~~------~~~l~~L~~L~L~~n-------------~i~~~~-~~~~l~-~L~~L~l~~n~i 122 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD--ISP------LSNLVKLTNLYIGTN-------------KITDIS-ALQNLT-NLRELYLNEDNI 122 (347)
T ss_dssp TTCCEEECCSSCCCC--CGG------GTTCTTCCEEECCSS-------------CCCCCG-GGTTCT-TCSEEECTTSCC
T ss_pred CCccEEEccCCcccc--chh------hhcCCcCCEEEccCC-------------cccCch-HHcCCC-cCCEEECcCCcc
Confidence 457777765442222 111 112366777776422 122233 355566 899999988876
Q ss_pred cC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccC-CceeEEEeC
Q 038350 180 GL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIELWL 257 (472)
Q Consensus 180 ~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~i~~ 257 (472)
.. +.+..+++|++|++.++.... .+.. +..++.|+.|++.+|... .+.....+++|+.|.+++|.. .... ....
T Consensus 123 ~~~~~~~~l~~L~~L~l~~n~~~~-~~~~-~~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l 198 (347)
T 4fmz_A 123 SDISPLANLTKMYSLNLGANHNLS-DLSP-LSNMTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISP-LASL 198 (347)
T ss_dssp CCCGGGTTCTTCCEEECTTCTTCC-CCGG-GTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECTTSCCCCCGG-GGGC
T ss_pred cCchhhccCCceeEEECCCCCCcc-cccc-hhhCCCCcEEEecCCCcC-CchhhccCCCCCEEEccCCccccccc-ccCC
Confidence 52 336788888888888773321 1111 677888888888887532 221123456888888888764 1111 2346
Q ss_pred CCeeEEEEeeeec-eE-eecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCc
Q 038350 258 PRLQYFEYAGKMV-PF-DMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLF 335 (472)
Q Consensus 258 p~L~~L~l~~~~~-~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 335 (472)
++|+.|.+.+... .. .+..+++|+.+++..+.... ... +..+++|++|+++.+.+..+ ..+.
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~~--------~~~~ 262 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD-------LSP-LANLSQLTWLEIGTNQISDI--------NAVK 262 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCC--------GGGT
T ss_pred CccceeecccCCCCCCchhhcCCcCCEEEccCCccCC-------Ccc-hhcCCCCCEEECCCCccCCC--------hhHh
Confidence 6788888766322 11 15677888888776442211 111 67788888888877755432 1234
Q ss_pred ccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEeee
Q 038350 336 QFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEGFT 415 (472)
Q Consensus 336 ~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~f~ 415 (472)
.+.+|+.|.+..+.-.. + ..+..+|+|+.|+++.+...... ......+++|+.+.+.+-.
T Consensus 263 ~l~~L~~L~l~~n~l~~----~-~~~~~l~~L~~L~L~~n~l~~~~---------------~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISD----I-SVLNNLSQLNSLFLNNNQLGNED---------------MEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TCTTCCEEECCSSCCCC----C-GGGGGCTTCSEEECCSSCCCGGG---------------HHHHHTCTTCSEEECCSSS
T ss_pred cCCCcCEEEccCCccCC----C-hhhcCCCCCCEEECcCCcCCCcC---------------hhHhhccccCCEEEccCCc
Confidence 56788888886542111 1 24677888888888777421110 0001155778888887643
Q ss_pred cChhhHHHHHHHHhcCccceEEEEeec
Q 038350 416 GKICEIDLVKFLLRNSRSIKELNIKQL 442 (472)
Q Consensus 416 g~~~e~~~~~~ll~~~~~L~~l~i~~~ 442 (472)
-+.-. . +...+.|+++.+...
T Consensus 323 l~~~~-~-----~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 323 ITDIR-P-----LASLSKMDSADFANQ 343 (347)
T ss_dssp CCCCG-G-----GGGCTTCSEESSSCC
T ss_pred ccccc-C-----hhhhhccceeehhhh
Confidence 22222 1 456788887776543
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.93 E-value=7.2e-10 Score=109.44 Aligned_cols=188 Identities=14% Similarity=0.105 Sum_probs=92.6
Q ss_pred ccCCceEEEEEEeeeeec--CCC-CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCee
Q 038350 163 YEQGMCIRVLNINSCGLG--LCN-FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR 239 (472)
Q Consensus 163 ~~~~~~L~~L~L~~~~l~--~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~ 239 (472)
..+. +|++|+|+++.+. |.. +.++++|++|+|+++.+..- ....+..++.|+.|++.++. +..+.+ ..+++|+
T Consensus 114 ~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~L~ 189 (390)
T 3o6n_A 114 QNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNR-LTHVDL-SLIPSLF 189 (390)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSC-CSBCCG-GGCTTCS
T ss_pred cCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCc-CCcccc-ccccccc
Confidence 3444 7888888877665 222 56778888888877766521 11225667888888887764 222221 2235666
Q ss_pred EEEEeeccCCceeEEEeCCCeeEEEEeeeec-eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecc
Q 038350 240 KLIVRHCQSLSLGIELWLPRLQYFEYAGKMV-PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTS 318 (472)
Q Consensus 240 ~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~ 318 (472)
.|.+.++. +..+. ..++|++|++++... .+.....++|+.+++....... ...+..+++|++|+++++
T Consensus 190 ~L~l~~n~--l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 190 HANVSYNL--LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp EEECCSSC--CSEEE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSS
T ss_pred eeeccccc--ccccC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--------cHHHcCCCCccEEECCCC
Confidence 66666654 22222 233566666554321 2222233455555544321111 023455556666666555
Q ss_pred cccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 319 ALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
.+... .+ ..+..+.+|+.|.+..+.-. .++..+..+|+|+.|+++.+
T Consensus 259 ~l~~~-----~~-~~~~~l~~L~~L~L~~n~l~----~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 259 ELEKI-----MY-HPFVKMQRLERLYISNNRLV----ALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CCCEE-----ES-GGGTTCSSCCEEECCSSCCC----EEECSSSCCTTCCEEECCSS
T ss_pred cCCCc-----Ch-hHccccccCCEEECCCCcCc----ccCcccCCCCCCCEEECCCC
Confidence 43321 11 22334455555555432110 11112234555555555554
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.91 E-value=7.6e-10 Score=116.49 Aligned_cols=202 Identities=8% Similarity=-0.000 Sum_probs=133.7
Q ss_pred CCcccc--cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEE-eChHHHHHHHh------cCCCcceEeecccCC
Q 038350 158 LPHFFY--EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVR-LSWAAMENIAH------NCPFLETLSLVECYR 225 (472)
Q Consensus 158 lp~~~~--~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~------~cp~Le~L~l~~c~~ 225 (472)
+|..+. .+. +|++|+|++|.+. |..+.++++|++|+|+++. +++..+..-+. .+++|+.|++.+|.-
T Consensus 239 ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 888887 788 9999999999654 5678999999999999998 77523333333 469999999998863
Q ss_pred ceeEEE---eeCCCCeeEEEEeeccCC--ceeEEEeCCCeeEEEEeeeec---eEeecCCCc-eeEEEEEEeecccccCc
Q 038350 226 IFKVEI---TLRTLGLRKLIVRHCQSL--SLGIELWLPRLQYFEYAGKMV---PFDMRGMDD-LEVVVLDYRLDTRYSYN 296 (472)
Q Consensus 226 ~~~l~i---~~~~~~L~~L~l~~c~~~--~~~~~i~~p~L~~L~l~~~~~---~~~~~~~~~-L~~l~l~~~~~~~~~~~ 296 (472)
. .+.- ...+++|+.|.+++|... +. .....++|++|.+++... +-.+.++++ |+.++++...-..
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~---- 391 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY---- 391 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS----
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc----
Confidence 3 3321 235679999999998741 12 123456899999877422 123556777 8888877543211
Q ss_pred hhhHHhhccc--CCCCcEEEEecccccccccccccccCCCc-------ccCCceeEEEecccCchhHHHHHHHHhcCCCc
Q 038350 297 GDDIESLFNP--FSDARILQVSTSALKIFPTECLLCGRQLF-------QFWQLEHLTLNTGLERFELAAIICLLISSPNI 367 (472)
Q Consensus 297 ~~~~~~ll~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L 367 (472)
++..+.. +++|++|+++.+.+.. ..| ..+. ...+|+.|.+..+.-.. .-..+++.+++|
T Consensus 392 ---lp~~~~~~~l~~L~~L~Ls~N~l~~-----~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~---lp~~~~~~l~~L 459 (636)
T 4eco_A 392 ---IPNIFDAKSVSVMSAIDFSYNEIGS-----VDG-KNFDPLDPTPFKGINVSSINLSNNQISK---FPKELFSTGSPL 459 (636)
T ss_dssp ---CCSCCCTTCSSCEEEEECCSSCTTT-----TTT-CSSCTTCSSCCCCCCEEEEECCSSCCCS---CCTHHHHTTCCC
T ss_pred ---cchhhhhcccCccCEEECcCCcCCC-----cch-hhhcccccccccCCCCCEEECcCCccCc---CCHHHHccCCCC
Confidence 2223333 3489999998876542 122 2222 55688888887542111 112356778999
Q ss_pred ceEEEEeCccc
Q 038350 368 TTLAISTGAIM 378 (472)
Q Consensus 368 ~~L~i~~~~~~ 378 (472)
+.|+++.+...
T Consensus 460 ~~L~Ls~N~l~ 470 (636)
T 4eco_A 460 SSINLMGNMLT 470 (636)
T ss_dssp SEEECCSSCCS
T ss_pred CEEECCCCCCC
Confidence 99999887544
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.91 E-value=5.3e-09 Score=107.97 Aligned_cols=243 Identities=13% Similarity=0.077 Sum_probs=140.0
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV 229 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l 229 (472)
.....+|..++ . +|++|+|+++.+. +..+.++++|++|+|+++.+++- ....+.++++|+.|++.++.-.+..
T Consensus 15 ~~l~~ip~~~~--~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 15 RSFTSIPSGLT--A-AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp SCCSSCCSCCC--T-TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CccccccccCC--C-CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccC
Confidence 34556777654 4 8999999998665 56689999999999999877621 1133678999999999988532211
Q ss_pred E-EeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCC
Q 038350 230 E-ITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS 308 (472)
Q Consensus 230 ~-i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~ 308 (472)
. ....+++|+.|.+++|.. ..+ ..+-.+.++++|+.+++....... ......+..++
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l--~~~---------------~~~~~~~~l~~L~~L~L~~n~~~~-----~~~~~~~~~l~ 148 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPY--QTL---------------GVTSLFPNLTNLQTLRIGNVETFS-----EIRRIDFAGLT 148 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCC--SSS---------------CSSCSCTTCTTCCEEEEEESSSCC-----EECTTTTTTCC
T ss_pred HHHhccCCCCcEEECCCCcc--ccc---------------chhhhhhccCCccEEECCCCcccc-----ccCHhhhhccc
Confidence 1 023456788888777753 100 001123445555555554332000 00112456788
Q ss_pred CCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCC
Q 038350 309 DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYF 388 (472)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~ 388 (472)
+|++|+++.+.+.. ..| ..+..+.+|++|.+..+.... .-..++..+++|+.|+++.+.....+
T Consensus 149 ~L~~L~L~~n~l~~-----~~~-~~l~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~------- 212 (549)
T 2z81_A 149 SLNELEIKALSLRN-----YQS-QSLKSIRDIHHLTLHLSESAF---LLEIFADILSSVRYLELRDTNLARFQ------- 212 (549)
T ss_dssp EEEEEEEEETTCCE-----ECT-TTTTTCSEEEEEEEECSBSTT---HHHHHHHSTTTBSEEEEESCBCTTCC-------
T ss_pred ccCeeeccCCcccc-----cCh-hhhhccccCceEecccCcccc---cchhhHhhcccccEEEccCCcccccc-------
Confidence 88888888775542 233 455667788888887543221 12224567899999999887532211
Q ss_pred CCCcccccccccccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeec
Q 038350 389 PLSRGEIWTTNGSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQL 442 (472)
Q Consensus 389 ~~~~~~~w~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~ 442 (472)
..+ .+.. ....+|+.+.+.+-.-......-+...+.+.+.|+.+.+...
T Consensus 213 -~~~--~~~~--~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 213 -FSP--LPVD--EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp -CCC--CSSC--CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred -ccc--cchh--hhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 000 0000 034567777776643333333333334455566666666543
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.90 E-value=4.4e-10 Score=110.98 Aligned_cols=183 Identities=19% Similarity=0.110 Sum_probs=80.6
Q ss_pred eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEE
Q 038350 168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLI 242 (472)
Q Consensus 168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~ 242 (472)
+|++|+|+++.+. +..+.++++|++|+|.++.++. -...++.++++|+.|++.++.- ..+.. ...+++|+.|.
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEE
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEE
Confidence 6666666665443 2334566666666666655541 1111234566666666665532 11110 12234666666
Q ss_pred EeeccCCceeEE-EeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccc
Q 038350 243 VRHCQSLSLGIE-LWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALK 321 (472)
Q Consensus 243 l~~c~~~~~~~~-i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~ 321 (472)
++++.. ..+. -..|+|+.|.+++.... .+...+.|+.+++......... ....++|+.|+++++.+.
T Consensus 172 l~~n~l--~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~L~~L~l~~n~l~~~~---------~~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 172 LSSNRL--THVDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVR---------GPVNVELTILKLQHNNLT 239 (390)
T ss_dssp CCSSCC--SBCCGGGCTTCSEEECCSSCCS-EEECCSSCSEEECCSSCCCEEE---------CCCCSSCCEEECCSSCCC
T ss_pred CCCCcC--Cccccccccccceeeccccccc-ccCCCCcceEEECCCCeeeecc---------ccccccccEEECCCCCCc
Confidence 665542 1111 12355666655543211 1122344555544422111100 012345666666555433
Q ss_pred ccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 322 IFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
.. ..+..+.+|+.|++..+.-.. ..+..+..+++|+.|+++.+
T Consensus 240 ~~--------~~l~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 240 DT--------AWLLNYPGLVEVDLSYNELEK---IMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp CC--------GGGGGCTTCSEEECCSSCCCE---EESGGGTTCSSCCEEECCSS
T ss_pred cc--------HHHcCCCCccEEECCCCcCCC---cChhHccccccCCEEECCCC
Confidence 21 122345556666655331110 11223455666666666555
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.90 E-value=2.3e-10 Score=107.94 Aligned_cols=202 Identities=15% Similarity=0.098 Sum_probs=109.8
Q ss_pred cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE- 230 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~- 230 (472)
...+|..+ .. +|++|+|+++.+. +..+..+++|++|+|.++.++.-. ...+.++++|+.|++.++..++.+.
T Consensus 23 l~~ip~~~--~~-~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 23 LQAVPVGI--PA-ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CSSCCTTC--CT-TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cccCCcCC--CC-CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCH
Confidence 34455543 23 7999999988665 345789999999999988776211 2236778999999999886454442
Q ss_pred -EeeCCCCeeEEEEeeccCC-c-eeEEEeCCCeeEEEEeeeec-eE---eecCCCceeEEEEEEeecccccCchhhHHhh
Q 038350 231 -ITLRTLGLRKLIVRHCQSL-S-LGIELWLPRLQYFEYAGKMV-PF---DMRGMDDLEVVVLDYRLDTRYSYNGDDIESL 303 (472)
Q Consensus 231 -i~~~~~~L~~L~l~~c~~~-~-~~~~i~~p~L~~L~l~~~~~-~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l 303 (472)
....+++|+.|.+.+|... . ....-..++|++|.+++... .+ .+..+++|+.+++....-.. .....
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~ 172 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------VPERA 172 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------ECTTT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------cCHHH
Confidence 1233568888888887631 1 00011356677777765321 11 13445555555554321110 01122
Q ss_pred cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
+..+++|++|+++++.+... .+ ..+..+.+|+.|++..+.-.. .....+..+|+|+.|+++.+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~-----~~-~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHV-----HP-HAFRDLGRLMTLYLFANNLSA---LPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEE-----CT-TTTTTCTTCCEEECCSSCCSC---CCHHHHTTCTTCCEEECCSS
T ss_pred hcCccccCEEECCCCccccc-----CH-hHccCcccccEeeCCCCcCCc---CCHHHcccCcccCEEeccCC
Confidence 44455666666655543321 12 333445555666554321111 11123455566666655554
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.89 E-value=4.9e-10 Score=117.10 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=28.1
Q ss_pred eEEEEEEeeeeec--CC-CCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350 168 CIRVLNINSCGLG--LC-NFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC 223 (472)
Q Consensus 168 ~L~~L~L~~~~l~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 223 (472)
+|++|+|+++.+. |+ .+.++++|++|+|+++.+..- ....+.++++|+.|++.++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTS
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCC
Confidence 5666666655443 22 235566666666665554411 1112445566666666655
No 34
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.89 E-value=1.6e-10 Score=116.60 Aligned_cols=184 Identities=18% Similarity=0.114 Sum_probs=89.6
Q ss_pred ccccEEEeeeEEeChH---HHHHHHhcCCCcceEeecccCCceeEE---E----eeCCCCeeEEEEeeccCCc------e
Q 038350 188 IQLTSLALTRVRLSWA---AMENIAHNCPFLETLSLVECYRIFKVE---I----TLRTLGLRKLIVRHCQSLS------L 251 (472)
Q Consensus 188 ~~L~~L~L~~~~~~~~---~l~~l~~~cp~Le~L~l~~c~~~~~l~---i----~~~~~~L~~L~l~~c~~~~------~ 251 (472)
++|++|+|.++.+++. .+...+..|+.|+.|++.+|. ++... + ....++|++|.+++|.... .
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 3455555555544432 233334445555555555543 11110 0 0012366666666665311 1
Q ss_pred eEEEeCCCeeEEEEeeeec-e--------EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccc
Q 038350 252 GIELWLPRLQYFEYAGKMV-P--------FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKI 322 (472)
Q Consensus 252 ~~~i~~p~L~~L~l~~~~~-~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~ 322 (472)
...-..++|++|++++... . .....+++|+.+++..+.-.. .....+...+..+++|++|+++++.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH--HHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH--HHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 1111356777777765321 0 011246667777665432110 0011245556667888888887765432
Q ss_pred cccccccccCCC-cccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 323 FPTECLLCGRQL-FQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 323 ~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
... .... ..+ ....+|+.|.+..+. .......+...+..+++|+.|+++.+.
T Consensus 299 ~~~-~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 299 EGA-RLLC-ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHH-HHHH-HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHH-HHHH-HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 110 0000 001 122477888877543 223345667777888888888887763
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.87 E-value=4.6e-10 Score=107.42 Aligned_cols=199 Identities=15% Similarity=0.071 Sum_probs=111.5
Q ss_pred cCCcccccCCceEEEEEEee-eeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-E
Q 038350 157 VLPHFFYEQGMCIRVLNINS-CGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-I 231 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~-~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i 231 (472)
.+|..+.... +|++|+|++ +.+. |..+.++++|++|+|+++.++. .+...+..+++|+.|++.++.-.+.+. .
T Consensus 67 ~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 67 PIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp ECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 5677777777 888888885 5443 4557888888888888887652 122236678888888888764221111 1
Q ss_pred eeCCCCeeEEEEeeccCCce-eE---EEeCC-CeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHh
Q 038350 232 TLRTLGLRKLIVRHCQSLSL-GI---ELWLP-RLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIES 302 (472)
Q Consensus 232 ~~~~~~L~~L~l~~c~~~~~-~~---~i~~p-~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 302 (472)
...+++|+.|.++++.. . .+ ....+ +|++|.+++... +-.+..+. |+.++++...... ....
T Consensus 145 ~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~------~~~~ 215 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRI--SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG------DASV 215 (313)
T ss_dssp GGGCTTCCEEECCSSCC--EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE------CCGG
T ss_pred HhcCCCCCeEECcCCcc--cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC------cCCH
Confidence 22356888888887763 1 11 01223 677777765321 11233333 6666554322111 1234
Q ss_pred hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
.+..+++|+.|+++.+.+.. ..+ .+..+.+|+.|++..+.-.. .++..+..+++|+.|+++.+.
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~-----~~~--~~~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAF-----DLG--KVGLSKNLNGLDLRNNRIYG---TLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp GCCTTSCCSEEECCSSEECC-----BGG--GCCCCTTCCEEECCSSCCEE---CCCGGGGGCTTCCEEECCSSE
T ss_pred HHhcCCCCCEEECCCCceee-----ecC--cccccCCCCEEECcCCcccC---cCChHHhcCcCCCEEECcCCc
Confidence 45666777777776665431 111 13345667777765432111 223345666777777776653
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.86 E-value=5.2e-10 Score=112.78 Aligned_cols=195 Identities=16% Similarity=0.062 Sum_probs=93.4
Q ss_pred cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCC
Q 038350 162 FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTL 236 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~ 236 (472)
+..+. +|++|+|+++.+. +..+.++++|++|+|+++.++. -....+.++++|+.|++.++. +..+.- ...++
T Consensus 95 ~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 95 FRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVP 171 (452)
T ss_dssp TTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCT
T ss_pred cCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCC-cceeCHhHHhcCC
Confidence 33444 7777777766543 3456667777777777665551 111224556777777776654 222211 12345
Q ss_pred CeeEEEEeeccCCceeEEE----eCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCC
Q 038350 237 GLRKLIVRHCQSLSLGIEL----WLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDA 310 (472)
Q Consensus 237 ~L~~L~l~~c~~~~~~~~i----~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L 310 (472)
+|+.|.+.+|. .+..+.. ..++|++|.+++... . -.+..+++|+.++++...... .....+..+++|
T Consensus 172 ~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L 244 (452)
T 3zyi_A 172 SLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE------IRPGSFHGLSSL 244 (452)
T ss_dssp TCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE------ECGGGGTTCTTC
T ss_pred cccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc------cCcccccCccCC
Confidence 66666666654 2222221 245666666654311 1 123445556665554321111 112334555666
Q ss_pred cEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 311 RILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 311 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
+.|.++.+.+..+. + ..+..+.+|+.|++..+.-.. .....+..+++|+.|+|+.+
T Consensus 245 ~~L~L~~n~l~~~~-----~-~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 245 KKLWVMNSQVSLIE-----R-NAFDGLASLVELNLAHNNLSS---LPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECTTSCCCEEC-----T-TTTTTCTTCCEEECCSSCCSC---CCTTSSTTCTTCCEEECCSS
T ss_pred CEEEeCCCcCceEC-----H-HHhcCCCCCCEEECCCCcCCc---cChHHhccccCCCEEEccCC
Confidence 66666555443211 1 233445555666554321100 01123445566666665554
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.86 E-value=8.5e-10 Score=115.47 Aligned_cols=144 Identities=14% Similarity=0.146 Sum_probs=85.2
Q ss_pred cCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEE
Q 038350 164 EQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLI 242 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~ 242 (472)
.+. +|++|++.++.+.. +.+..+++|++|++.++.+. .+..+ .++.|+.|++.+|.....+.+ ..+++|+.|.
T Consensus 283 ~l~-~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ 356 (606)
T 3vq2_A 283 CLA-NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLD 356 (606)
T ss_dssp GGT-TCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCC-CCCTTCCEEE
T ss_pred cCC-CCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhh-ccCCCCCEEE
Confidence 344 78888888876652 35677888888888888774 33333 788888888888865554432 2456788888
Q ss_pred EeeccCCceeEE------EeCCCeeEEEEeeeec---eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEE
Q 038350 243 VRHCQSLSLGIE------LWLPRLQYFEYAGKMV---PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARIL 313 (472)
Q Consensus 243 l~~c~~~~~~~~------i~~p~L~~L~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L 313 (472)
+++|.. ..+. ...++|++|.+++... +-.+.++++|+.+++........ .....+..+++|++|
T Consensus 357 ls~n~l--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 357 LSRNAL--SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV-----TEFSAFLSLEKLLYL 429 (606)
T ss_dssp CCSSCE--EEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST-----TTTTTTTTCTTCCEE
T ss_pred CcCCcc--CCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc-----cChhhhhccccCCEE
Confidence 877752 2221 2456777777765321 12355667777776653321110 001234455666666
Q ss_pred EEecccc
Q 038350 314 QVSTSAL 320 (472)
Q Consensus 314 ~l~~~~~ 320 (472)
+++.+.+
T Consensus 430 ~l~~n~l 436 (606)
T 3vq2_A 430 DISYTNT 436 (606)
T ss_dssp ECTTSCC
T ss_pred ECcCCCC
Confidence 6655543
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.85 E-value=3.6e-10 Score=118.31 Aligned_cols=75 Identities=24% Similarity=0.114 Sum_probs=35.6
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHH
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENI 208 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l 208 (472)
++++.+.+.... ...+| .+..+. +|++|++.+|.+.. +.+ .+++|++|++.++...... -
T Consensus 285 ~~L~~L~l~~~~-------------~~~l~-~l~~~~-~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~ 345 (606)
T 3vq2_A 285 ANVSAMSLAGVS-------------IKYLE-DVPKHF-KWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---K 345 (606)
T ss_dssp TTCSEEEEESCC-------------CCCCC-CCCTTC-CCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---C
T ss_pred CCCCEEEecCcc-------------chhhh-hccccc-cCCEEEcccccCcccccC-CCCccceeeccCCcCccch---h
Confidence 667777765321 12233 333344 66666666655531 233 5555555555554222110 1
Q ss_pred HhcCCCcceEeeccc
Q 038350 209 AHNCPFLETLSLVEC 223 (472)
Q Consensus 209 ~~~cp~Le~L~l~~c 223 (472)
+..+|+|+.|++.+|
T Consensus 346 ~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 346 KVALPSLSYLDLSRN 360 (606)
T ss_dssp CCCCTTCCEEECCSS
T ss_pred hccCCCCCEEECcCC
Confidence 334555555555554
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.85 E-value=1.2e-08 Score=111.00 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=34.7
Q ss_pred CcccccCCceEEEEEEeeeeec---CCC--CCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350 159 PHFFYEQGMCIRVLNINSCGLG---LCN--FVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC 223 (472)
Q Consensus 159 p~~~~~~~~~L~~L~L~~~~l~---~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 223 (472)
|..+..+. +|++|+|++|.+. +.. +.++++|++|+|+++.+........+.++++|+.|++.++
T Consensus 90 p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 90 PDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred HhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 44444445 6666666666553 222 4566666666666665542222233555666666666654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.85 E-value=1.4e-09 Score=113.59 Aligned_cols=197 Identities=15% Similarity=0.063 Sum_probs=135.1
Q ss_pred CCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350 153 NPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV 229 (472)
Q Consensus 153 ~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l 229 (472)
+....+|..+|...++|++|+|++|.+. +..+.++++|++|+|+++.++.-. +..+|.|+.|++.++. +..+
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~-l~~l 207 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTL 207 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSC-CSEE
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCc-cccc
Confidence 3445677766543339999999999765 445889999999999999887422 5678999999999874 3444
Q ss_pred EEeeCCCCeeEEEEeeccCCceeEE-EeCCCeeEEEEeeeec--eEeecCCCceeEEEEEEeecccccCchhhHHhhccc
Q 038350 230 EITLRTLGLRKLIVRHCQSLSLGIE-LWLPRLQYFEYAGKMV--PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNP 306 (472)
Q Consensus 230 ~i~~~~~~L~~L~l~~c~~~~~~~~-i~~p~L~~L~l~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~ 306 (472)
... ++|+.|.++++.. ..+. ...++|+.|.+.+... ...+..+++|+.++++...... ..+..+..
T Consensus 208 ~~~---~~L~~L~ls~n~l--~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~------~~~~~~~~ 276 (597)
T 3oja_B 208 AIP---IAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK------IMYHPFVK 276 (597)
T ss_dssp ECC---TTCSEEECCSSCC--CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE------EESGGGTT
T ss_pred cCC---chhheeeccCCcc--cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC------CCHHHhcC
Confidence 322 4899999998863 2222 1236899999877422 2346778889998887543211 22345678
Q ss_pred CCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 307 FSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 307 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
+++|+.|+++++.+..+ | .....+++|+.|.+..+.-. .++.-+..+|+|+.|+|..+.
T Consensus 277 l~~L~~L~Ls~N~l~~l------~-~~~~~l~~L~~L~Ls~N~l~----~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 277 MQRLERLYISNNRLVAL------N-LYGQPIPTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CSSCCEEECTTSCCCEE------E-CSSSCCTTCCEEECCSSCCC----CCGGGHHHHTTCSEEECCSSC
T ss_pred ccCCCEEECCCCCCCCC------C-cccccCCCCcEEECCCCCCC----ccCcccccCCCCCEEECCCCC
Confidence 89999999988765532 2 33345788999998754211 233334667899999988874
No 41
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.84 E-value=7.3e-10 Score=109.27 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=45.4
Q ss_pred cCCcccccCCceEEEEEEeeeeecC-------CCCCCcccccEEEeeeEEeC------hHHH---HHHHhcCCCcceEee
Q 038350 157 VLPHFFYEQGMCIRVLNINSCGLGL-------CNFVNFIQLTSLALTRVRLS------WAAM---ENIAHNCPFLETLSL 220 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~~l~~-------~~~~~~~~L~~L~L~~~~~~------~~~l---~~l~~~cp~Le~L~l 220 (472)
.++..+..+. +|++|+|++|.+.. ..+..+++|++|+|+++.+. ..++ ...+..+++|+.|+|
T Consensus 23 ~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3444444555 66666666665542 12456666777766665322 1122 223445667777776
Q ss_pred cccCCce----eE-EEeeCCCCeeEEEEeecc
Q 038350 221 VECYRIF----KV-EITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 221 ~~c~~~~----~l-~i~~~~~~L~~L~l~~c~ 247 (472)
.+|.-.. .+ ..-..+++|+.|.+++|.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 6654211 01 001223466666666665
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.83 E-value=4.8e-09 Score=107.61 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=40.1
Q ss_pred eEEEEEEeeeeecC---CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350 168 CIRVLNINSCGLGL---CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR 244 (472)
Q Consensus 168 ~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~ 244 (472)
+|++|+|+++.+.. ..+.++++|++|+|+++.+++- ....+.++++|+.|++.++. +..+... .+++|++|.++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK-LVKISCH-PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC-CCEEECC-CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc-eeecCcc-ccCCccEEecc
Confidence 56666666665441 2345666666666666655411 01224556666666666553 2333222 34566666666
Q ss_pred ecc
Q 038350 245 HCQ 247 (472)
Q Consensus 245 ~c~ 247 (472)
+|.
T Consensus 99 ~N~ 101 (520)
T 2z7x_B 99 FNA 101 (520)
T ss_dssp SSC
T ss_pred CCc
Confidence 554
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.82 E-value=2e-09 Score=111.66 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=41.3
Q ss_pred eEEEEEEeee-eec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEE
Q 038350 168 CIRVLNINSC-GLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIV 243 (472)
Q Consensus 168 ~L~~L~L~~~-~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l 243 (472)
+++.+.+.++ .+. +..+..+++|++|++.++.+. .+...+..+ .|+.|++.+|.-. .+.. ..+++|+.|.+
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l 332 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE--RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC--SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch--hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeC
Confidence 4455555443 222 233455555555555555544 122223334 5555555555321 1111 22345555555
Q ss_pred eeccCCceeEEEeCCCeeEEEEee
Q 038350 244 RHCQSLSLGIELWLPRLQYFEYAG 267 (472)
Q Consensus 244 ~~c~~~~~~~~i~~p~L~~L~l~~ 267 (472)
.++...........|+|++|++++
T Consensus 333 ~~n~~~~~~~~~~~~~L~~L~l~~ 356 (570)
T 2z63_A 333 TSNKGGNAFSEVDLPSLEFLDLSR 356 (570)
T ss_dssp ESCBSCCBCCCCBCTTCCEEECCS
T ss_pred cCCccccccccccCCCCCEEeCcC
Confidence 555421000013445555555544
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.82 E-value=1e-10 Score=112.22 Aligned_cols=228 Identities=12% Similarity=0.081 Sum_probs=124.7
Q ss_pred eEEEEEEeeeeecC---CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350 168 CIRVLNINSCGLGL---CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR 244 (472)
Q Consensus 168 ~L~~L~L~~~~l~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~ 244 (472)
+|++|+|+++.+.. ..+..+++|++|+|+++.+++.. . +..+++|+.|++.+|. +..+. ..++|+.|.++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECC
Confidence 56666666665542 23456666666666666554111 1 5566666766666653 22222 12466777666
Q ss_pred eccCCceeE-EEeCCCeeEEEEeeee----ceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccc
Q 038350 245 HCQSLSLGI-ELWLPRLQYFEYAGKM----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSA 319 (472)
Q Consensus 245 ~c~~~~~~~-~i~~p~L~~L~l~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~ 319 (472)
++.. ..+ ....++|++|.+++.. .+..+..+++|+.++++....... ....+...+++|++|+++.+.
T Consensus 108 ~n~l--~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 108 NNNI--SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-----NFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp SSCC--SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-----EGGGGGGGTTTCCEEECTTSC
T ss_pred CCcc--CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-----cHHHHhhccCcCCEEECCCCc
Confidence 6652 222 2235667777766532 123455667777776654321110 122445578899999998876
Q ss_pred ccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccc
Q 038350 320 LKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN 399 (472)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~ 399 (472)
+..+. ....+.+|+.|.++.+.-. .++.-+..+++|+.|+++.+.....++ .
T Consensus 181 l~~~~--------~~~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~~L~L~~N~l~~l~~----------------~ 232 (317)
T 3o53_A 181 IYDVK--------GQVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLVLIEK----------------A 232 (317)
T ss_dssp CCEEE--------CCCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCCEECT----------------T
T ss_pred Ccccc--------cccccccCCEEECCCCcCC----cchhhhcccCcccEEECcCCcccchhh----------------H
Confidence 65432 1123778899988754211 222236778999999998874322220 0
Q ss_pred cccccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEe
Q 038350 400 GSILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIK 440 (472)
Q Consensus 400 ~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~ 440 (472)
...+++|+.+.+.+-.-... .+...+.+.+.|+.+.+.
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred hhcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence 11456888888876433311 222344455666655554
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.81 E-value=3.2e-10 Score=114.48 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=24.6
Q ss_pred cccCccEEEEEeeecC-hhhHHHHHHHHhcCccceEEEEeeccc
Q 038350 402 ILDHLECVQFEGFTGK-ICEIDLVKFLLRNSRSIKELNIKQLIR 444 (472)
Q Consensus 402 ~~~~L~~v~i~~f~g~-~~e~~~~~~ll~~~~~L~~l~i~~~~~ 444 (472)
.+++|+.+.+.+-.-+ .....+.+.+..+.+.|+++.+.....
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 3567888877653222 222234444444556888888876553
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.80 E-value=7.5e-09 Score=112.59 Aligned_cols=60 Identities=18% Similarity=0.072 Sum_probs=36.0
Q ss_pred CCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 308 SDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
++++.|+++.+.+..+ .+ ..+..+.+|+.|.+..+.-.. ..+..+..+++|+.|+++.+.
T Consensus 266 ~~L~~L~Ls~n~l~~~-----~~-~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-----NS-RVFETLKDLKVLNLAYNKINK---IADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SCCCEEECTTCCCCEE-----CS-CCSSSCCCCCEEEEESCCCCE---ECTTTTTTCSSCCEEEEESCC
T ss_pred CCccEEECCCCccccc-----Ch-hhhhcCCCCCEEECCCCcCCC---CChHHhcCCCCCCEEECCCCC
Confidence 5788888877654322 12 345567778888877542111 112235677888888887774
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.80 E-value=7.6e-10 Score=111.19 Aligned_cols=194 Identities=14% Similarity=0.084 Sum_probs=91.8
Q ss_pred cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCe
Q 038350 164 EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGL 238 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L 238 (472)
.+. +|++|+|+++.+. +..|.++++|++|+|.++.++.- ....+..+++|+.|++.++. +..+.- ...+++|
T Consensus 86 ~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 86 HLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSL 162 (440)
T ss_dssp SCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTC
T ss_pred CCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCc-ccccCHHHhhhCccc
Confidence 344 6777777666443 23456666677777766655510 11124556666666666654 222211 1224566
Q ss_pred eEEEEeeccCCceeEEE----eCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcE
Q 038350 239 RKLIVRHCQSLSLGIEL----WLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARI 312 (472)
Q Consensus 239 ~~L~l~~c~~~~~~~~i----~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~ 312 (472)
+.|.+.+|. ....+.. ..++|++|.+++... . -.+..+++|+.++++...... .....+..+++|+.
T Consensus 163 ~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 163 RRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA------IRPGSFQGLMHLQK 235 (440)
T ss_dssp CEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE------ECTTTTTTCTTCCE
T ss_pred CEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc------cChhhhccCccCCE
Confidence 666666654 2222211 245566666654311 1 123445556665554321111 11233455666666
Q ss_pred EEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 313 LQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 313 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
|.++.+.+..+. + ..+..+.+|+.|+|..+.-.. .....+..+++|+.|+|+.++
T Consensus 236 L~L~~n~l~~~~-----~-~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQSQIQVIE-----R-NAFDNLQSLVEINLAHNNLTL---LPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTCCCCEEC-----T-TSSTTCTTCCEEECTTSCCCC---CCTTTTSSCTTCCEEECCSSC
T ss_pred EECCCCceeEEC-----h-hhhcCCCCCCEEECCCCCCCc---cChhHhccccCCCEEEcCCCC
Confidence 666655443221 1 233445556666654321110 011234555666666665553
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.80 E-value=5.6e-10 Score=113.62 Aligned_cols=206 Identities=13% Similarity=0.079 Sum_probs=129.0
Q ss_pred eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEe
Q 038350 168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVR 244 (472)
Q Consensus 168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~ 244 (472)
+|++|+|+++.+. |..+..+++|++|+|+++.+++.. . +..+++|+.|+|.+|. +..+. ..++|+.|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC---CCCCcCEEECc
Confidence 7888888887665 335678888888888877665211 1 6678888888888764 33333 22588888888
Q ss_pred eccCCceeE-EEeCCCeeEEEEeeee----ceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccc
Q 038350 245 HCQSLSLGI-ELWLPRLQYFEYAGKM----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSA 319 (472)
Q Consensus 245 ~c~~~~~~~-~i~~p~L~~L~l~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~ 319 (472)
+|.. ..+ ....|+|+.|.+++.. .+..++.+++|+.++++...... .....+...+++|++|+++++.
T Consensus 108 ~N~l--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 108 NNNI--SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp SSCC--CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-----EEGGGGGGGTTTCCEEECTTSC
T ss_pred CCcC--CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-----cChHHHhhhCCcccEEecCCCc
Confidence 8763 222 2245788888887632 23456678888888776432211 1223444578999999998887
Q ss_pred ccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccc
Q 038350 320 LKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN 399 (472)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~ 399 (472)
+..+ + +...+.+|+.|+++.+.-. +++.-+..+|+|+.|+++.+.....++ .
T Consensus 181 l~~~------~--~~~~l~~L~~L~Ls~N~l~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~----------------~ 232 (487)
T 3oja_A 181 IYDV------K--GQVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLVLIEK----------------A 232 (487)
T ss_dssp CCEE------E--CCCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCCEECT----------------T
T ss_pred cccc------c--ccccCCCCCEEECCCCCCC----CCCHhHcCCCCccEEEecCCcCcccch----------------h
Confidence 6533 1 1224778999998754211 222236788999999998875332220 0
Q ss_pred cccccCccEEEEEeee
Q 038350 400 GSILDHLECVQFEGFT 415 (472)
Q Consensus 400 ~~~~~~L~~v~i~~f~ 415 (472)
...+++|+.+.+.|-.
T Consensus 233 l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCCCTTCCEEECTTCC
T ss_pred hccCCCCCEEEcCCCC
Confidence 1144678888776643
No 49
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.78 E-value=6.8e-10 Score=106.00 Aligned_cols=189 Identities=14% Similarity=0.112 Sum_probs=114.7
Q ss_pred HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHH
Q 038350 129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMEN 207 (472)
Q Consensus 129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ 207 (472)
-+++++|.+... ....+| .+..+. +|++|+|++|.+.. +.+..+++|++|+|+++.+.+ +.
T Consensus 40 l~~L~~L~l~~~-------------~i~~l~-~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~--~~- 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-------------GVTTIE-GVQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS- 101 (308)
T ss_dssp HHTCCEEECTTS-------------CCCCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-
T ss_pred cCCcCEEEeeCC-------------CccCch-hhhccC-CCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC--ch-
Confidence 467888877421 222344 344556 89999998887752 227888899999998888773 22
Q ss_pred HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEE
Q 038350 208 IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDY 287 (472)
Q Consensus 208 l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~ 287 (472)
-+..+++|+.|++.+|. +..+.-...+++|+.|.+++|.. ..+ . .+..+++|+.+++..
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l--~~~----------------~--~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQI--TNI----------------S--PLAGLTNLQYLSIGN 160 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCC--CCC----------------G--GGGGCTTCCEEECCS
T ss_pred hhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCcc--CcC----------------c--cccCCCCccEEEccC
Confidence 36778899999998875 23222223456777777777653 110 0 033445555554443
Q ss_pred eecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCc
Q 038350 288 RLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNI 367 (472)
Q Consensus 288 ~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L 367 (472)
+.-.. +.. +..+++|+.|+++.+.+..+. .+..+.+|++|.+..+.-.. +.. +..+|+|
T Consensus 161 n~l~~-------~~~-l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~L~~N~l~~----~~~-l~~l~~L 219 (308)
T 1h6u_A 161 AQVSD-------LTP-LANLSKLTTLKADDNKISDIS--------PLASLPNLIEVHLKNNQISD----VSP-LANTSNL 219 (308)
T ss_dssp SCCCC-------CGG-GTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECTTSCCCB----CGG-GTTCTTC
T ss_pred CcCCC-------Chh-hcCCCCCCEEECCCCccCcCh--------hhcCCCCCCEEEccCCccCc----ccc-ccCCCCC
Confidence 21111 111 567788888888877654321 14557788888886542111 111 6788889
Q ss_pred ceEEEEeCcc
Q 038350 368 TTLAISTGAI 377 (472)
Q Consensus 368 ~~L~i~~~~~ 377 (472)
+.|+++.+.-
T Consensus 220 ~~L~l~~N~i 229 (308)
T 1h6u_A 220 FIVTLTNQTI 229 (308)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEccCCee
Confidence 9988887753
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.74 E-value=4.2e-10 Score=107.74 Aligned_cols=216 Identities=11% Similarity=-0.026 Sum_probs=143.2
Q ss_pred HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH
Q 038350 129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM 205 (472)
Q Consensus 129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l 205 (472)
-+.++.|.+.-.+ .....+|..+..+. +|++|+|+++.+. |..+..+++|++|+|+++.+.. .+
T Consensus 75 l~~L~~L~L~~~n-----------~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~ 141 (313)
T 1ogq_A 75 LPYLNFLYIGGIN-----------NLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TL 141 (313)
T ss_dssp CTTCSEEEEEEET-----------TEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CC
T ss_pred CCCCCeeeCCCCC-----------cccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cC
Confidence 3788888886211 12235677777777 9999999999775 4567899999999999998763 22
Q ss_pred HHHHhcCCCcceEeecccCCceeEEE-eeCCC-CeeEEEEeeccCCceeE---EEeCCCeeEEEEeeee----ceEeecC
Q 038350 206 ENIAHNCPFLETLSLVECYRIFKVEI-TLRTL-GLRKLIVRHCQSLSLGI---ELWLPRLQYFEYAGKM----VPFDMRG 276 (472)
Q Consensus 206 ~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~-~L~~L~l~~c~~~~~~~---~i~~p~L~~L~l~~~~----~~~~~~~ 276 (472)
...+..+++|+.|++.++.-.+.+.. ...++ +|+.|.++++.. ... .+...+|++|++++.. .+..+..
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l--~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~ 219 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE--EEECCGGGGGCCCSEEECCSSEEEECCGGGCCT
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee--eccCChHHhCCcccEEECcCCcccCcCCHHHhc
Confidence 23467899999999998863322211 12233 899999998862 111 1122249999987742 2234678
Q ss_pred CCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHH
Q 038350 277 MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAA 356 (472)
Q Consensus 277 ~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 356 (472)
+++|+.+++....... .. ..+..+++|++|+++.+.+. +..| ..+..+.+|+.|++..+.-.. .
T Consensus 220 l~~L~~L~L~~N~l~~------~~-~~~~~l~~L~~L~Ls~N~l~-----~~~p-~~l~~l~~L~~L~Ls~N~l~~---~ 283 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAF------DL-GKVGLSKNLNGLDLRNNRIY-----GTLP-QGLTQLKFLHSLNVSFNNLCG---E 283 (313)
T ss_dssp TSCCSEEECCSSEECC------BG-GGCCCCTTCCEEECCSSCCE-----ECCC-GGGGGCTTCCEEECCSSEEEE---E
T ss_pred CCCCCEEECCCCceee------ec-CcccccCCCCEEECcCCccc-----CcCC-hHHhcCcCCCEEECcCCcccc---c
Confidence 8999999887543221 11 22567899999999988664 2334 456678899999997542111 1
Q ss_pred HHHHHhcCCCcceEEEEeCc
Q 038350 357 IICLLISSPNITTLAISTGA 376 (472)
Q Consensus 357 l~~ll~~~p~L~~L~i~~~~ 376 (472)
++.. ..+++|+.|.+..++
T Consensus 284 ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSS
T ss_pred CCCC-ccccccChHHhcCCC
Confidence 2222 567788888777664
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.74 E-value=5.8e-08 Score=99.48 Aligned_cols=67 Identities=21% Similarity=0.157 Sum_probs=48.5
Q ss_pred ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCccc
Q 038350 305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIM 378 (472)
Q Consensus 305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~ 378 (472)
..+++|++|+++.+.+.. ..| ..+..+.+|+.|.+..+.- .....++..+..+++|+.|+++.+...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~-----~~~-~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD-----TVF-ENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp SSCCCCCEEECCSSCCCT-----TTT-TTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred hhCCcccEEEeECCccCh-----hhh-hhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCC
Confidence 577889999998776542 233 4556788999999975421 234466778899999999999887543
No 52
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.74 E-value=3.7e-09 Score=71.99 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=31.6
Q ss_pred CCCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350 4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY 39 (472)
Q Consensus 4 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr 39 (472)
..+.++.||+||+.+||++||.+|+++++.|||+|+
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~ 40 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWY 40 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.73 E-value=1.1e-10 Score=111.21 Aligned_cols=202 Identities=19% Similarity=0.144 Sum_probs=117.7
Q ss_pred ccCCcccc-cCCceEEEEEEeeeeec-----CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350 156 YVLPHFFY-EQGMCIRVLNINSCGLG-----LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV 229 (472)
Q Consensus 156 ~~lp~~~~-~~~~~L~~L~L~~~~l~-----~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l 229 (472)
..+|...| .+. +|++|+|+++.+. +..+.++++|++|+|+++.+. .+...+..+++|+.|++.++. +..+
T Consensus 41 ~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~-l~~~ 116 (306)
T 2z66_A 41 QSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSN-LKQM 116 (306)
T ss_dssp CCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE--EEEEEEETCTTCCEEECTTSE-EESS
T ss_pred CccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccc--cChhhcCCCCCCCEEECCCCc-cccc
Confidence 35565544 344 8888888877654 233456788888888877655 121225567888888888763 1111
Q ss_pred ---EEeeCCCCeeEEEEeeccCC--ceeEEEeCCCeeEEEEeeee-----ceEeecCCCceeEEEEEEeecccccCchhh
Q 038350 230 ---EITLRTLGLRKLIVRHCQSL--SLGIELWLPRLQYFEYAGKM-----VPFDMRGMDDLEVVVLDYRLDTRYSYNGDD 299 (472)
Q Consensus 230 ---~i~~~~~~L~~L~l~~c~~~--~~~~~i~~p~L~~L~l~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 299 (472)
.....+++|+.|.+++|... .....-..++|++|.+++.. .+-.+..+++|+.++++...-.. .
T Consensus 117 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~ 190 (306)
T 2z66_A 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------L 190 (306)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------E
T ss_pred ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC------c
Confidence 11233568888888777530 00001135678888876632 12345677888888776432111 1
Q ss_pred HHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCC-CcceEEEEeCc
Q 038350 300 IESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSP-NITTLAISTGA 376 (472)
Q Consensus 300 ~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p-~L~~L~i~~~~ 376 (472)
....+..+++|++|+++++.+..+.. ..+..+.+|+.|++..+.-.. ..+..+..+| +|+.|+++.+.
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDT------FPYKCLNSLQVLDYSLNHIMT---SKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCS------GGGTTCTTCCEEECTTSCCCB---CSSSSCCCCCTTCCEEECTTCC
T ss_pred CHHHhcCCCCCCEEECCCCccCccCh------hhccCcccCCEeECCCCCCcc---cCHHHHHhhhccCCEEEccCCC
Confidence 12445677888888888776543221 234557788888886542111 1122345554 88888887764
No 54
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.71 E-value=1.2e-09 Score=115.00 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=60.2
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeee-ec----CCCCCC------cccccEEEeeeE
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCG-LG----LCNFVN------FIQLTSLALTRV 198 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~-l~----~~~~~~------~~~L~~L~L~~~ 198 (472)
+.++.|.+.... ....+|..+.... +|++|+|+++. +. |..+.. +++|++|+|.++
T Consensus 249 ~~L~~L~L~~n~------------l~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 249 KDLTDVEVYNCP------------NLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTCCEEEEECCT------------TCSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CCCCEEEecCCc------------CCccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 667788776321 1235666666666 88888888775 43 222333 378888888877
Q ss_pred EeChHHHHH--HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350 199 RLSWAAMEN--IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC 246 (472)
Q Consensus 199 ~~~~~~l~~--l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c 246 (472)
.++ .+.. .+..+++|+.|++.++.-.+.+.....+++|+.|.++++
T Consensus 316 ~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 316 NLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp CCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred cCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 776 3333 466778888888877653322221111235555555444
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=5.7e-09 Score=112.70 Aligned_cols=205 Identities=13% Similarity=0.035 Sum_probs=130.8
Q ss_pred CCcccc--cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEE-eCh----HHHHHH---HhcCCCcceEeecccC
Q 038350 158 LPHFFY--EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVR-LSW----AAMENI---AHNCPFLETLSLVECY 224 (472)
Q Consensus 158 lp~~~~--~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~-~~~----~~l~~l---~~~cp~Le~L~l~~c~ 224 (472)
+|..+. .+. +|++|+|++|.+. |..+.++++|++|+|+++. +++ ..+..+ +..+|+|+.|++.+|.
T Consensus 481 iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 788775 677 9999999998654 5567899999999999997 765 233332 2456799999999886
Q ss_pred CceeEEE---eeCCCCeeEEEEeeccCC-ceeEEEeCCCeeEEEEeeeec---eEeecCCCc-eeEEEEEEeecccccCc
Q 038350 225 RIFKVEI---TLRTLGLRKLIVRHCQSL-SLGIELWLPRLQYFEYAGKMV---PFDMRGMDD-LEVVVLDYRLDTRYSYN 296 (472)
Q Consensus 225 ~~~~l~i---~~~~~~L~~L~l~~c~~~-~~~~~i~~p~L~~L~l~~~~~---~~~~~~~~~-L~~l~l~~~~~~~~~~~ 296 (472)
-. .+.- ...+++|+.|.++++... ++ .....++|+.|.+++... +-.+.++++ |+.+++..+.-.
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~----- 632 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK----- 632 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-----
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-----
Confidence 33 3322 235679999999998742 22 112467899999877432 123556777 888887754321
Q ss_pred hhhHHhhcccCC--CCcEEEEecccccccccccccccCCC--cccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEE
Q 038350 297 GDDIESLFNPFS--DARILQVSTSALKIFPTECLLCGRQL--FQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAI 372 (472)
Q Consensus 297 ~~~~~~ll~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i 372 (472)
.++..+..++ +|+.|+++.+.+.... ...+ ..+ ....+|+.|.+..+.-.. .-..++..+++|+.|++
T Consensus 633 --~lp~~~~~~~~~~L~~L~Ls~N~l~g~i--p~l~-~~l~~~~~~~L~~L~Ls~N~L~~---lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 633 --YIPNIFNAKSVYVMGSVDFSYNKIGSEG--RNIS-CSMDDYKGINASTVTLSYNEIQK---FPTELFATGSPISTIIL 704 (876)
T ss_dssp --SCCSCCCTTCSSCEEEEECCSSCTTTTS--SSCS-SCTTTCCCCCEEEEECCSSCCCS---CCHHHHHTTCCCSEEEC
T ss_pred --cCchhhhccccCCCCEEECcCCcCCCcc--ccch-hhhccccCCCcCEEEccCCcCCc---cCHHHHccCCCCCEEEC
Confidence 1223333443 4899999887654211 0011 111 234478888887542111 11234568899999999
Q ss_pred EeCccc
Q 038350 373 STGAIM 378 (472)
Q Consensus 373 ~~~~~~ 378 (472)
+.+...
T Consensus 705 s~N~L~ 710 (876)
T 4ecn_A 705 SNNLMT 710 (876)
T ss_dssp CSCCCS
T ss_pred CCCcCC
Confidence 887543
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.70 E-value=3.2e-09 Score=102.30 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=32.6
Q ss_pred hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
.+..+++|++|+++.+.+.... + ..+..+.+|+.|.+..+. ...++.-+..+|+|+.|+++.+.
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~~~l~~L~~L~L~~N~----l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVD-----N-GSLANTPHLRELHLNNNK----LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEEC-----T-TTGGGSTTCCEEECCSSC----CSSCCTTTTTCSSCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCceeC-----h-hhccCCCCCCEEECCCCc----CccCChhhccCCCcCEEECCCCc
Confidence 3455666666666655443211 1 233445566666665431 11222334566666666666654
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.69 E-value=6.5e-09 Score=104.81 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=65.7
Q ss_pred cccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEE
Q 038350 162 FYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKL 241 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L 241 (472)
+..+. +|++|+|+++.+..-.+..+++|++|+|+++.+++- . +.++++|+.|++.++. +..+. ...+++|+.|
T Consensus 60 l~~l~-~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~-l~~l~-~~~l~~L~~L 132 (457)
T 3bz5_A 60 IEKLT-GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNK-LTKLD-VSQNPLLTYL 132 (457)
T ss_dssp GGGCT-TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSC-CSCCC-CTTCTTCCEE
T ss_pred hcccC-CCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCc-CCeec-CCCCCcCCEE
Confidence 44555 777777777766543466777777777777766632 1 5567777777777663 23333 2334566777
Q ss_pred EEeeccCCceeEEE-eCCCeeEEEEeee--eceEeecCCCceeEEEEE
Q 038350 242 IVRHCQSLSLGIEL-WLPRLQYFEYAGK--MVPFDMRGMDDLEVVVLD 286 (472)
Q Consensus 242 ~l~~c~~~~~~~~i-~~p~L~~L~l~~~--~~~~~~~~~~~L~~l~l~ 286 (472)
.++++.. ..+.+ ..++|++|.+.+. ...+.+..+++|+.+++.
T Consensus 133 ~l~~N~l--~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 133 NCARNTL--TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178 (457)
T ss_dssp ECTTSCC--SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred ECCCCcc--ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence 6666653 11111 3455666665543 112334455556555554
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.69 E-value=4.9e-09 Score=111.22 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=32.5
Q ss_pred hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCc-hhHHH----HHHHHhcCCCcceEEEEeCc
Q 038350 303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLER-FELAA----IICLLISSPNITTLAISTGA 376 (472)
Q Consensus 303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~----l~~ll~~~p~L~~L~i~~~~ 376 (472)
.+..+++|+.|+++.+.+..+. + ..+..+.+|+.|++..+.-. ..... ....+..+++|+.|+++.+.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~-----~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANIN-----D-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC-----T-TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccccCCCCCEEECCCCCCCcCC-----h-hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 3455666666666665443221 1 22344566666666543110 00000 01125666777777766654
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.68 E-value=2.2e-09 Score=100.65 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=60.0
Q ss_pred cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE- 230 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~- 230 (472)
...+|..+. . +|++|+|+++.+. +..+.++++|++|+|+++.+..- ....+.++++|+.|++.++.- ..+.
T Consensus 19 l~~ip~~l~--~-~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~ 93 (276)
T 2z62_A 19 FYKIPDNLP--F-STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLAL 93 (276)
T ss_dssp CSSCCSSSC--T-TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECT
T ss_pred ccccCCCCC--C-CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCcc-CccCh
Confidence 445666542 3 7999999988665 34678999999999998877621 112367789999999998752 2222
Q ss_pred -EeeCCCCeeEEEEeecc
Q 038350 231 -ITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 231 -i~~~~~~L~~L~l~~c~ 247 (472)
....+++|+.|.+.++.
T Consensus 94 ~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp TTTTTCTTCCEEECTTSC
T ss_pred hhhcCCccccEEECCCCC
Confidence 12234577777777765
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=9e-09 Score=111.15 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=62.8
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeee-ec----CC-------CCCCcccccEEEeee
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCG-LG----LC-------NFVNFIQLTSLALTR 197 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~-l~----~~-------~~~~~~~L~~L~L~~ 197 (472)
++++.|.+.... ....+|..+..+. +|++|+|+++. +. |. .+..+++|++|+|++
T Consensus 491 ~~L~~L~Ls~N~------------l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 491 KDLTDVELYNCP------------NMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TTCCEEEEESCT------------TCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred CCCCEEECcCCC------------CCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 678888876321 2335676676677 88888888775 43 21 334556888888887
Q ss_pred EEeChHHHHH--HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeecc
Q 038350 198 VRLSWAAMEN--IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 198 ~~~~~~~l~~--l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 247 (472)
+.+. .+.. .+.++++|+.|++.++.- ..+.....+++|+.|.+++|.
T Consensus 558 N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 558 NNLE--EFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp SCCC--BCCCHHHHTTCTTCCEEECTTSCC-CBCCCCCTTSEESEEECCSSC
T ss_pred CcCC--ccCChhhhhcCCCCCEEECCCCCc-ccchhhcCCCcceEEECcCCc
Confidence 7776 3333 466778888888877642 233222334566666666554
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.66 E-value=4.8e-09 Score=98.77 Aligned_cols=225 Identities=15% Similarity=0.101 Sum_probs=124.9
Q ss_pred EEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE--EeeCCCCeeEEEEeecc
Q 038350 170 RVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE--ITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 170 ~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~l~~c~ 247 (472)
+.++..+..+..-+..-.++|++|+|+++.+++-. ...+..+++|+.|++.++. +..+. ....+++|+.|.++++.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence 34555555554322234578999999998776211 1236789999999999874 33332 12335799999999885
Q ss_pred CCceeE----EEeCCCeeEEEEeeeec----eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccc
Q 038350 248 SLSLGI----ELWLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSA 319 (472)
Q Consensus 248 ~~~~~~----~i~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~ 319 (472)
. ...+ ....++|++|.+++... +-.+.++++|+.+++....... .....+..+++|++|+++++.
T Consensus 92 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 92 Q-LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA------LPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp T-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc------cCHhHhccCCCccEEECCCCc
Confidence 1 1221 12357888888876422 1224566777777665432111 111335567777777777665
Q ss_pred ccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccc
Q 038350 320 LKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTN 399 (472)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~ 399 (472)
+..+.. ..+..+.+|+.|.+..+.-.. ..+..+..+++|+.|++..+.....+ ...
T Consensus 165 l~~~~~------~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~ 220 (285)
T 1ozn_A 165 ISSVPE------RAFRGLHSLDRLLLHQNRVAH---VHPHAFRDLGRLMTLYLFANNLSALP---------------TEA 220 (285)
T ss_dssp CCEECT------TTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCSCCC---------------HHH
T ss_pred ccccCH------HHhcCccccCEEECCCCcccc---cCHhHccCcccccEeeCCCCcCCcCC---------------HHH
Confidence 442211 234456677777776432111 11233566777777777766322111 000
Q ss_pred cccccCccEEEEEe--eecChhhHHHHHHH
Q 038350 400 GSILDHLECVQFEG--FTGKICEIDLVKFL 427 (472)
Q Consensus 400 ~~~~~~L~~v~i~~--f~g~~~e~~~~~~l 427 (472)
...+++|+.+.+.+ +.+......+..++
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred cccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 11446777777765 44444444454443
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.66 E-value=2.8e-08 Score=102.95 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=43.1
Q ss_pred ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcc
Q 038350 305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAI 377 (472)
Q Consensus 305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~ 377 (472)
..+++|++|+++++.+.. ..| ..+..+.+|+.|.+..+.- .....++..+..+++|+.|+++.+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~-----~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD-----SVF-QGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SSCCCCCEEECCSSCCCT-----TTT-TTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred cCCCCceEEECCCCcccc-----chh-hhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcC
Confidence 456777777777665442 123 4456678888888875421 12235566788899999999987753
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.65 E-value=4.2e-08 Score=101.65 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=18.6
Q ss_pred cccCccEEEEEeeecChhhHHHHHHHHhcCccceEEEEeecc
Q 038350 402 ILDHLECVQFEGFTGKICEIDLVKFLLRNSRSIKELNIKQLI 443 (472)
Q Consensus 402 ~~~~L~~v~i~~f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~ 443 (472)
.+++|+.+.+.+-.-+ .+.-+...+.+.++|+.+.++...
T Consensus 375 ~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 375 TLKRLQTLILQRNGLK--NFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SCSSCCEEECCSSCCC--BTTHHHHTTTTCTTCCEEECTTSC
T ss_pred ccCCCCEEECCCCCcC--CcccchhhhcCCCCCCEEECCCCc
Confidence 4456666666542111 111122234556666666665433
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.65 E-value=1.7e-09 Score=104.26 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=107.2
Q ss_pred ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEe
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEIT 232 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~ 232 (472)
..+|..++ . +|++|+|+++.+. +..+.++++|++|+|.++.++.- ....+.++++|+.|++.++. +..+...
T Consensus 46 ~~ip~~~~--~-~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~ 120 (332)
T 2ft3_A 46 KAVPKEIS--P-DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNH-LVEIPPN 120 (332)
T ss_dssp SSCCSCCC--T-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSC-CCSCCSS
T ss_pred cccCCCCC--C-CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCc-CCccCcc
Confidence 35565542 3 7888999887654 45678889999999988877621 12236678899999998774 2222211
Q ss_pred eCCCCeeEEEEeeccCC-ce-eEEEeCCCeeEEEEeeeec------eEeecCCCceeEEEEEEeecccccC---------
Q 038350 233 LRTLGLRKLIVRHCQSL-SL-GIELWLPRLQYFEYAGKMV------PFDMRGMDDLEVVVLDYRLDTRYSY--------- 295 (472)
Q Consensus 233 ~~~~~L~~L~l~~c~~~-~~-~~~i~~p~L~~L~l~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~--------- 295 (472)
. .++|++|.++++... .. ..-...++|++|.+.+... +..+..+ +|+.+++....-.....
T Consensus 121 ~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L 198 (332)
T 2ft3_A 121 L-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL 198 (332)
T ss_dssp C-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCC
T ss_pred c-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEE
Confidence 1 148888888877531 11 0112366788888766321 1112222 34444333211100000
Q ss_pred ------chhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcce
Q 038350 296 ------NGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITT 369 (472)
Q Consensus 296 ------~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~ 369 (472)
-.......+..+++|++|+++++.+..+. + ..+..+.+|+.|.+..+.- ..++.-+..+|+|+.
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-----~-~~~~~l~~L~~L~L~~N~l----~~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-----N-GSLSFLPTLRELHLDNNKL----SRVPAGLPDLKLLQV 268 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----T-TGGGGCTTCCEEECCSSCC----CBCCTTGGGCTTCCE
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----h-hHhhCCCCCCEEECCCCcC----eecChhhhcCccCCE
Confidence 00001123445566666666655443221 1 2234556667776654311 122333566777777
Q ss_pred EEEEeCc
Q 038350 370 LAISTGA 376 (472)
Q Consensus 370 L~i~~~~ 376 (472)
|+++.+.
T Consensus 269 L~l~~N~ 275 (332)
T 2ft3_A 269 VYLHTNN 275 (332)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 7776654
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.64 E-value=5.3e-09 Score=109.07 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=55.1
Q ss_pred ccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCC
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRT 235 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~ 235 (472)
..+|..++ . +|++|+|++|.+..-. ..+++|++|+|+++.++. +.. ..++|+.|++.+|. +..+.- ..
T Consensus 53 ~~lp~~l~--~-~L~~L~L~~N~l~~lp-~~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~l~~--~l 120 (622)
T 3g06_A 53 TTLPDCLP--A-HITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNP-LTHLPA--LP 120 (622)
T ss_dssp SCCCSCCC--T-TCSEEEECSCCCSCCC-CCCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCC-CCCCCC--CC
T ss_pred CccChhhC--C-CCcEEEecCCCCCCCC-CcCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCc-CCCCCC--CC
Confidence 35565443 3 7777777777665211 156777777777776651 111 56777777777663 222211 33
Q ss_pred CCeeEEEEeeccCCceeEEEeCCCeeEEEEee
Q 038350 236 LGLRKLIVRHCQSLSLGIELWLPRLQYFEYAG 267 (472)
Q Consensus 236 ~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~ 267 (472)
++|+.|.++++.. ..+....++|++|.+++
T Consensus 121 ~~L~~L~L~~N~l--~~lp~~l~~L~~L~Ls~ 150 (622)
T 3g06_A 121 SGLCKLWIFGNQL--TSLPVLPPGLQELSVSD 150 (622)
T ss_dssp TTCCEEECCSSCC--SCCCCCCTTCCEEECCS
T ss_pred CCcCEEECCCCCC--CcCCCCCCCCCEEECcC
Confidence 4666666666642 22222346666666655
No 66
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.64 E-value=9.6e-10 Score=108.41 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=49.0
Q ss_pred ecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCC--cccCCceeEEEecccCc
Q 038350 274 MRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQL--FQFWQLEHLTLNTGLER 351 (472)
Q Consensus 274 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~ 351 (472)
+..+++|+.+++..+.... .....+...+..+++|++|+++++.+..... ...+ ..+ ..+.+|++|.+..+.-.
T Consensus 212 l~~~~~L~~L~Ls~n~l~~--~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~-~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTH--LGSSALAIALKSWPNLRELGLNDCLLSARGA-AAVV-DAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp GGGCTTCCEEECCSSCCHH--HHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-HHHH-HHHHTCSSCCCCEEECCSSCCB
T ss_pred hhcCCCccEEECcCCCCCc--HHHHHHHHHHccCCCcCEEECCCCCCchhhH-HHHH-HHHhhccCCCeEEEECcCCcCC
Confidence 3445566665554322100 0012345566677777777777665432110 0011 112 22667777777654221
Q ss_pred -hhHHHHHHHH-hcCCCcceEEEEeCc
Q 038350 352 -FELAAIICLL-ISSPNITTLAISTGA 376 (472)
Q Consensus 352 -~~~~~l~~ll-~~~p~L~~L~i~~~~ 376 (472)
.....++..+ .++|+|+.|+++.+.
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 1223355444 557777777776663
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.61 E-value=3.6e-09 Score=107.62 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=81.9
Q ss_pred CCcEEEEEeeCCCCCCCCCCCCCCcccCC-cccccCCceEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHH
Q 038350 131 SVQELSLDFSDGDPVVPQPTLRNPQYVLP-HFFYEQGMCIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENI 208 (472)
Q Consensus 131 ~l~~L~l~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l 208 (472)
+++.|.+.. +....+| ..+..+. +|++|+|++|.+. ..++..+++|++|+|+++.+++
T Consensus 35 ~L~~L~Ls~-------------n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------ 94 (487)
T 3oja_A 35 NVKELDLSG-------------NPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------ 94 (487)
T ss_dssp GCCEEECCS-------------SCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------
T ss_pred CccEEEeeC-------------CcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------
Confidence 677777753 2222344 3444556 9999999998775 2338899999999999988762
Q ss_pred HhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccC-CceeEE-EeCCCeeEEEEeeeec-eE---ee-cCCCcee
Q 038350 209 AHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIE-LWLPRLQYFEYAGKMV-PF---DM-RGMDDLE 281 (472)
Q Consensus 209 ~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~-i~~p~L~~L~l~~~~~-~~---~~-~~~~~L~ 281 (472)
+...|.|+.|++.+|.- ..+.. ..+++|+.|.+++|.. ...... ...++|++|++++... .. .+ ..+++|+
T Consensus 95 l~~~~~L~~L~L~~N~l-~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 95 LLVGPSIETLHAANNNI-SRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp EEECTTCCEEECCSSCC-CCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCCCCcCEEECcCCcC-CCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 22458899999988753 22222 2345777887777764 111111 2356777777765321 11 12 2456666
Q ss_pred EEEEEE
Q 038350 282 VVVLDY 287 (472)
Q Consensus 282 ~l~l~~ 287 (472)
.++++.
T Consensus 173 ~L~Ls~ 178 (487)
T 3oja_A 173 HLNLQY 178 (487)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 666553
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.61 E-value=7.5e-09 Score=104.33 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=103.9
Q ss_pred ccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCee
Q 038350 161 FFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR 239 (472)
Q Consensus 161 ~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~ 239 (472)
.+..+. +|++|+++++.+.. +++..+++|++|+|+++.+++- . +..+++|+.|++.+|. +..+. ...+++|+
T Consensus 37 ~~~~l~-~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLA-TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLT 109 (457)
T ss_dssp EHHHHT-TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCC
T ss_pred ChhHcC-CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCC-Cceee-cCCCCcCC
Confidence 344556 89999999987763 4678999999999999988742 2 7789999999999886 44444 33467999
Q ss_pred EEEEeeccCCceeEE-EeCCCeeEEEEeeee-ceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEec
Q 038350 240 KLIVRHCQSLSLGIE-LWLPRLQYFEYAGKM-VPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVST 317 (472)
Q Consensus 240 ~L~l~~c~~~~~~~~-i~~p~L~~L~l~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~ 317 (472)
.|.++++.. ..+. -..++|++|.+++.. ..+.+.++++|+.+++..+..... + -+..+++|+.|+++.
T Consensus 110 ~L~L~~N~l--~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~------~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 110 YLNCDTNKL--TKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITK------L--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp EEECCSSCC--SCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCC------C--CCTTCTTCCEEECCS
T ss_pred EEECCCCcC--CeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccc------c--ccccCCcCCEEECCC
Confidence 999999974 2222 246789999997742 345678899999988865421110 1 245677888888877
Q ss_pred cccc
Q 038350 318 SALK 321 (472)
Q Consensus 318 ~~~~ 321 (472)
+.+.
T Consensus 180 n~l~ 183 (457)
T 3bz5_A 180 NKIT 183 (457)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 6544
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.60 E-value=6e-09 Score=98.45 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=14.3
Q ss_pred eEEEEEEeeeeec---CCCCCCcccccEEEeeeEEe
Q 038350 168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRL 200 (472)
Q Consensus 168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~ 200 (472)
++++|+|+++.+. +..+.++++|++|+|.++.+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l 67 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc
Confidence 4444444444332 22334444444444444433
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.60 E-value=4.4e-09 Score=111.58 Aligned_cols=102 Identities=21% Similarity=0.140 Sum_probs=54.2
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcc-cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHF-FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM 205 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l 205 (472)
+.++.|.+.. +....+|.. +..+. +|++|+|+++.+. +..+.++++|++|+|+++.+.....
T Consensus 73 ~~L~~L~L~~-------------n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 73 PMLKVLNLQH-------------NELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp TTCCEEECCS-------------SCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred cCcCEEECCC-------------CccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence 6777777642 222344543 33445 7777777766543 3346677777777777665542111
Q ss_pred HHHHhcCCCcceEeecccCCceeEEE----eeCCCCeeEEEEeecc
Q 038350 206 ENIAHNCPFLETLSLVECYRIFKVEI----TLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 206 ~~l~~~cp~Le~L~l~~c~~~~~l~i----~~~~~~L~~L~l~~c~ 247 (472)
..+.++++|+.|++.++.- ..+.. ...+++|+.|.++++.
T Consensus 139 -~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 139 -GTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp -CSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCC
T ss_pred -hhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCc
Confidence 1234567777777766532 11110 0112466666666553
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.58 E-value=3.2e-08 Score=95.16 Aligned_cols=201 Identities=10% Similarity=0.030 Sum_probs=124.2
Q ss_pred CcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCce-eE--EEeeCC
Q 038350 159 PHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIF-KV--EITLRT 235 (472)
Q Consensus 159 p~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~-~l--~i~~~~ 235 (472)
|..+..+. +|++|+|+++.+..-...-+++|++|++.++.+..- ....+.+++.|+.|++.++.-.. .+ .....+
T Consensus 93 ~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 93 PGAFAPLV-KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTTTTTCT-TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred HHHhcCCC-CCCEEECCCCcCCccChhhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 44455556 888888888766532212237888888888777621 22346789999999998875321 01 112235
Q ss_pred CCeeEEEEeeccCCceeEE-EeCCCeeEEEEeeeec-e---EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCC
Q 038350 236 LGLRKLIVRHCQSLSLGIE-LWLPRLQYFEYAGKMV-P---FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDA 310 (472)
Q Consensus 236 ~~L~~L~l~~c~~~~~~~~-i~~p~L~~L~l~~~~~-~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L 310 (472)
++|+.|.+.++.. ..+. ...++|++|.+++... . -.+..+++|+.++++...... .....+..+++|
T Consensus 171 ~~L~~L~l~~n~l--~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L 242 (330)
T 1xku_A 171 KKLSYIRIADTNI--TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA------VDNGSLANTPHL 242 (330)
T ss_dssp TTCCEEECCSSCC--CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE------ECTTTGGGSTTC
T ss_pred CCcCEEECCCCcc--ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce------eChhhccCCCCC
Confidence 7999999998864 1111 1127899999987422 2 246788999999887543211 112346778999
Q ss_pred cEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHH--HHHhcCCCcceEEEEeCc
Q 038350 311 RILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAII--CLLISSPNITTLAISTGA 376 (472)
Q Consensus 311 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~--~ll~~~p~L~~L~i~~~~ 376 (472)
+.|+++++.+.. .| ..+..+.+|+.|.+..+. .......+. ......+.|+.|++...+
T Consensus 243 ~~L~L~~N~l~~------lp-~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 243 RELHLNNNKLVK------VP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CEEECCSSCCSS------CC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CEEECCCCcCcc------CC-hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 999999886653 33 445678899999997542 111110000 011235788888887764
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.56 E-value=3.4e-09 Score=101.49 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=99.4
Q ss_pred ccccCCceEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCee
Q 038350 161 FFYEQGMCIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLR 239 (472)
Q Consensus 161 ~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~ 239 (472)
.+..+. +|++|+|+++.+. ...+..+++|++|+|+++.+++ +..++.|+.|++.++.- ..+.. ..+++|+
T Consensus 53 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~l-~~~~~-~~~~~L~ 123 (317)
T 3o53_A 53 DLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI-SRVSC-SRGQGKK 123 (317)
T ss_dssp HHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCC-SEEEE-CCCSSCE
T ss_pred HhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCcc-CCcCc-cccCCCC
Confidence 444455 8999999888664 2237888899999998887762 22458888888887753 33322 2245777
Q ss_pred EEEEeeccC-CceeEE-EeCCCeeEEEEeeeec-eEe---e-cCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcE
Q 038350 240 KLIVRHCQS-LSLGIE-LWLPRLQYFEYAGKMV-PFD---M-RGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARI 312 (472)
Q Consensus 240 ~L~l~~c~~-~~~~~~-i~~p~L~~L~l~~~~~-~~~---~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~ 312 (472)
.|.++++.. ...... ...++|++|++++... .+. + ..+++|+.++++...-.... -...+++|++
T Consensus 124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~l~~L~~ 195 (317)
T 3o53_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQVVFAKLKT 195 (317)
T ss_dssp EEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CCCCCTTCCE
T ss_pred EEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------cccccccCCE
Confidence 777777753 111111 2346677777765321 111 1 24566666666533211110 0113556666
Q ss_pred EEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 313 LQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 313 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
|+++.+.+..++ ..+..+.+|+.|.+..+.- ..++..+..+++|+.|+++.+
T Consensus 196 L~Ls~N~l~~l~-------~~~~~l~~L~~L~L~~N~l----~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 196 LDLSSNKLAFMG-------PEFQSAAGVTWISLRNNKL----VLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EECCSSCCCEEC-------GGGGGGTTCSEEECTTSCC----CEECTTCCCCTTCCEEECTTC
T ss_pred EECCCCcCCcch-------hhhcccCcccEEECcCCcc----cchhhHhhcCCCCCEEEccCC
Confidence 666555443221 1133445555555543211 112223445555555555544
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.55 E-value=1.3e-08 Score=99.37 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=53.0
Q ss_pred eEEEEEEeeeeecCC-------CCCCcc-cccEEEeeeEEeCh---HHHHHHHhcC-CCcceEeecccCCceeEEE----
Q 038350 168 CIRVLNINSCGLGLC-------NFVNFI-QLTSLALTRVRLSW---AAMENIAHNC-PFLETLSLVECYRIFKVEI---- 231 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~-------~~~~~~-~L~~L~L~~~~~~~---~~l~~l~~~c-p~Le~L~l~~c~~~~~l~i---- 231 (472)
+|++|+|++|.+... .+.+++ +|++|+|+++.+++ ..+..++..+ +.|++|++.+|. ++....
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHH
Confidence 688898888877632 245677 89999998888774 3455555554 889999998876 222110
Q ss_pred --eeCC-CCeeEEEEeeccC
Q 038350 232 --TLRT-LGLRKLIVRHCQS 248 (472)
Q Consensus 232 --~~~~-~~L~~L~l~~c~~ 248 (472)
-..+ ++|+.|.+++|..
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCCCCccEEECcCCcC
Confidence 1111 4788888888763
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.55 E-value=3e-08 Score=94.50 Aligned_cols=119 Identities=16% Similarity=0.061 Sum_probs=79.6
Q ss_pred HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHH
Q 038350 129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMEN 207 (472)
Q Consensus 129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ 207 (472)
.+.++.|.+.. +....++. +..+. +|++|+|+++.+.. +.+..+++|++|+|+++.+++ +..
T Consensus 62 l~~L~~L~L~~-------------n~i~~~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~ 124 (308)
T 1h6u_A 62 LNNLIGLELKD-------------NQITDLAP-LKNLT-KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD--VTP 124 (308)
T ss_dssp CTTCCEEECCS-------------SCCCCCGG-GTTCC-SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC--CGG
T ss_pred cCCCCEEEccC-------------CcCCCChh-HccCC-CCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC--chh
Confidence 36777777743 22334454 55566 99999999998763 457899999999999998873 222
Q ss_pred HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccC-CceeEEEeCCCeeEEEEee
Q 038350 208 IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAG 267 (472)
Q Consensus 208 l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~ 267 (472)
+..+++|+.|++.+|. +..+.....+++|+.|.+++|.. .... ....++|++|.+++
T Consensus 125 -l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 125 -LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp -GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred -hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 7889999999999885 23222233456888888888863 1111 11344555555544
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.50 E-value=2.2e-08 Score=91.65 Aligned_cols=172 Identities=10% Similarity=0.042 Sum_probs=99.3
Q ss_pred eEEEEEEeeeeec---CCCCCCcccccEEEeeeEE-eChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEE
Q 038350 168 CIRVLNINSCGLG---LCNFVNFIQLTSLALTRVR-LSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKL 241 (472)
Q Consensus 168 ~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L 241 (472)
+|++|+|+++.+. +..+.++++|++|++.++. ++.- -...+.++++|+.|++.+|..+..+.. ...+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 7889999888665 3457888999999998875 5410 011356788899998887655655431 2345577777
Q ss_pred EEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCcee---EEEEEEe-ecccccCchhhHHhhcccCCCCc-EEEEe
Q 038350 242 IVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLE---VVVLDYR-LDTRYSYNGDDIESLFNPFSDAR-ILQVS 316 (472)
Q Consensus 242 ~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~ll~~l~~L~-~L~l~ 316 (472)
.+.++.. ..+. . +..+++|+ .+++... .... .....+..+++|+ .|+++
T Consensus 111 ~l~~n~l--~~lp----------------~--~~~l~~L~~L~~L~l~~N~~l~~------i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 111 GIFNTGL--KMFP----------------D--LTKVYSTDIFFILEITDNPYMTS------IPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEECC--CSCC----------------C--CTTCCBCCSEEEEEEESCTTCCE------ECTTTTTTTBSSEEEEECC
T ss_pred eCCCCCC--cccc----------------c--cccccccccccEEECCCCcchhh------cCcccccchhcceeEEEcC
Confidence 7777652 1110 0 22333333 4444322 1000 1113356778888 88887
Q ss_pred cccccccccccccccCCCcccCCceeEEEecc--cCchhHHHHHHHHhcC-CCcceEEEEeCcc
Q 038350 317 TSALKIFPTECLLCGRQLFQFWQLEHLTLNTG--LERFELAAIICLLISS-PNITTLAISTGAI 377 (472)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~l~~ll~~~-p~L~~L~i~~~~~ 377 (472)
++.+..++ .......+|+.|.+..+ .... -...+..+ ++|+.|+++...-
T Consensus 165 ~n~l~~i~-------~~~~~~~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 165 NNGFTSVQ-------GYAFNGTKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp SCCCCEEC-------TTTTTTCEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCC
T ss_pred CCCCcccC-------HhhcCCCCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCcc
Confidence 77654332 11222257788877654 2111 11245667 8899998877643
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.49 E-value=2.8e-08 Score=92.76 Aligned_cols=179 Identities=17% Similarity=0.152 Sum_probs=99.6
Q ss_pred ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE--
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-- 230 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-- 230 (472)
..+|..+. . +|++|+|+++.+. +..+.++++|++|+|.++.++. -...++..++.|+.|++.++. +..+.
T Consensus 29 ~~ip~~~~--~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 103 (270)
T 2o6q_A 29 TAIPSNIP--A-DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIG 103 (270)
T ss_dssp SSCCSCCC--T-TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTT
T ss_pred CccCCCCC--C-CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHh
Confidence 34565442 3 7899999988765 3457889999999998887761 112335678999999998775 22222
Q ss_pred EeeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhccc
Q 038350 231 ITLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNP 306 (472)
Q Consensus 231 i~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~ 306 (472)
....+++|+.|.+.++.. ..+. -..++|++|.+++. .... .....+..
T Consensus 104 ~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n--------------------~l~~------~~~~~~~~ 155 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYN--------------------ELQS------LPKGVFDK 155 (270)
T ss_dssp TTTTCSSCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSS--------------------CCCC------CCTTTTTT
T ss_pred HcccccCCCEEECCCCcc--CeeCHHHhCcCcCCCEEECCCC--------------------cCCc------cCHhHccC
Confidence 112345777777777652 1110 12344555554432 1110 01123455
Q ss_pred CCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 307 FSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 307 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
+++|+.|+++.+.+..+.. ..+..+.+|+.|++..+.-.. .....+..+++|+.|+++.++
T Consensus 156 l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPE------GAFDKLTELKTLKLDNNQLKR---VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSC
T ss_pred CcccceeEecCCcCcEeCh------hHhccCCCcCEEECCCCcCCc---CCHHHhccccCCCEEEecCCC
Confidence 6677777776664432211 224455667777765431110 011234567777777776663
No 77
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=5.7e-08 Score=83.42 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=71.1
Q ss_pred ccCCcccccCCceEEEEEEeeeeecCCC---CCCcccccEEEeeeE-EeChHHHHHHHhc---CCCcceEeecccCCcee
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCGLGLCN---FVNFIQLTSLALTRV-RLSWAAMENIAHN---CPFLETLSLVECYRIFK 228 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~l~~~~---~~~~~~L~~L~L~~~-~~~~~~l~~l~~~---cp~Le~L~l~~c~~~~~ 228 (472)
..+|....... .|++|+|++|.+...+ +.+|++|++|+|.+| .++|.++..+... |+.|+.|+|.+|..+++
T Consensus 51 ~~LP~~~~~~~-~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 51 NHLPTGPLDKY-KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGSCCCSTTCC-CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ccCCcccCCCc-eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 45665433445 8999999999877544 478999999999999 5899999997763 88999999999998765
Q ss_pred EEE--eeCCCCeeEEEEeecc
Q 038350 229 VEI--TLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 229 l~i--~~~~~~L~~L~l~~c~ 247 (472)
--+ -..+++|++|.+++|.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 221 2346788888888887
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.48 E-value=8.4e-09 Score=98.52 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=55.3
Q ss_pred cCCceEEEEEEeeeeec---CCCC--CCcccccEEEeeeEEeChH--HHHHHHhc-CCCcceEeecccCCceeEE--Eee
Q 038350 164 EQGMCIRVLNINSCGLG---LCNF--VNFIQLTSLALTRVRLSWA--AMENIAHN-CPFLETLSLVECYRIFKVE--ITL 233 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~l~---~~~~--~~~~~L~~L~L~~~~~~~~--~l~~l~~~-cp~Le~L~l~~c~~~~~l~--i~~ 233 (472)
... +|++|+|+++.+. |..+ ..+++|++|+|+++.+++. .+..+... +++|+.|++.++.- ..+. ...
T Consensus 93 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~ 170 (312)
T 1wwl_A 93 GIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVR 170 (312)
T ss_dssp TTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCC
T ss_pred CcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhc
Confidence 455 8999999999775 4444 7899999999999988732 33332211 38999999998753 2221 122
Q ss_pred CCCCeeEEEEeecc
Q 038350 234 RTLGLRKLIVRHCQ 247 (472)
Q Consensus 234 ~~~~L~~L~l~~c~ 247 (472)
.+++|+.|.++++.
T Consensus 171 ~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 171 VFPALSTLDLSDNP 184 (312)
T ss_dssp CCSSCCEEECCSCT
T ss_pred cCCCCCEEECCCCC
Confidence 34577777777775
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.45 E-value=1.5e-08 Score=95.74 Aligned_cols=57 Identities=19% Similarity=0.077 Sum_probs=33.0
Q ss_pred cCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 164 EQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
.+. +|++|+|+++.+.. +.+..+++|++|+|+++.+++ +.. +..+++|+.|++.+|.
T Consensus 66 ~l~-~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 66 YLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG 123 (291)
T ss_dssp GCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC
T ss_pred cCC-CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc
Confidence 344 66677666665542 125666666666666666652 222 5556666666666653
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.41 E-value=2.1e-07 Score=82.41 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=46.9
Q ss_pred cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCe
Q 038350 162 FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGL 238 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L 238 (472)
+..+. +|++|+++++.+. +..+..+++|++|+|+++.+++..... +..+++|+.|++.+|..++.+.....+++|
T Consensus 84 l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L 161 (197)
T 4ezg_A 84 ISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPEL 161 (197)
T ss_dssp GTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSC
T ss_pred hhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCC
Confidence 33444 6666666666554 344566666666666666665433333 456666666666666534443322334456
Q ss_pred eEEEEeecc
Q 038350 239 RKLIVRHCQ 247 (472)
Q Consensus 239 ~~L~l~~c~ 247 (472)
+.|.+++|.
T Consensus 162 ~~L~l~~n~ 170 (197)
T 4ezg_A 162 KSLNIQFDG 170 (197)
T ss_dssp CEEECTTBC
T ss_pred CEEECCCCC
Confidence 666665554
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.40 E-value=2.6e-08 Score=92.95 Aligned_cols=215 Identities=15% Similarity=0.110 Sum_probs=124.0
Q ss_pred CCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEE
Q 038350 165 QGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLI 242 (472)
Q Consensus 165 ~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~ 242 (472)
|..+.+.+++++..+..-+..-.++|++|+|.++.++.-. ...+.++++|+.|++.++. +..+.. ...+++|+.|.
T Consensus 14 c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 14 CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp EETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred eCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence 4334667777777665311122367999999998776211 1236779999999998874 232221 12345777777
Q ss_pred EeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccc
Q 038350 243 VRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKI 322 (472)
Q Consensus 243 l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~ 322 (472)
+.++.. ..+. .-.+.++++|+.+++....... .....+..+++|++|+++.+.+..
T Consensus 92 l~~n~l--~~~~----------------~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 92 VTDNKL--QALP----------------IGVFDQLVNLAELRLDRNQLKS------LPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCSSCC--CCCC----------------TTTTTTCSSCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcC--CcCC----------------HhHcccccCCCEEECCCCccCe------eCHHHhCcCcCCCEEECCCCcCCc
Confidence 777652 1111 0112334445555444221111 112346788999999999886653
Q ss_pred cccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCccccccccccc
Q 038350 323 FPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSI 402 (472)
Q Consensus 323 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 402 (472)
+.. ..+..+.+|+.|.+..+.-.. .....+..+++|+.|+++.+.....+ + ..+ ..
T Consensus 148 ~~~------~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~---~-------~~~-----~~ 203 (270)
T 2o6q_A 148 LPK------GVFDKLTSLKELRLYNNQLKR---VPEGAFDKLTELKTLKLDNNQLKRVP---E-------GAF-----DS 203 (270)
T ss_dssp CCT------TTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCCSCCC---T-------TTT-----TT
T ss_pred cCH------hHccCCcccceeEecCCcCcE---eChhHhccCCCcCEEECCCCcCCcCC---H-------HHh-----cc
Confidence 321 335668899999997542111 11124678999999999988543332 1 111 15
Q ss_pred ccCccEEEEEe--eecChh-hHHHHHHHHh
Q 038350 403 LDHLECVQFEG--FTGKIC-EIDLVKFLLR 429 (472)
Q Consensus 403 ~~~L~~v~i~~--f~g~~~-e~~~~~~ll~ 429 (472)
+++|+.+.+.+ +.+... ...+.+.+.+
T Consensus 204 l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~ 233 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCTCNGIIYMAKWLKK 233 (270)
T ss_dssp CTTCCEEECCSSCBCCSSSSSHHHHHHHHH
T ss_pred ccCCCEEEecCCCeeCCCccHHHHHHHHHh
Confidence 57899999987 445443 2344444443
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.39 E-value=5.1e-08 Score=91.09 Aligned_cols=153 Identities=19% Similarity=0.128 Sum_probs=73.5
Q ss_pred cccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCe
Q 038350 162 FYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGL 238 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L 238 (472)
+..+. +|++|+|+++.+.. +.+..+++|++|+|.++.++. .....+.+++.|+.|++.+|.- ..+.- ...+++|
T Consensus 59 l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 59 IQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNL 135 (272)
T ss_dssp GGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTC
T ss_pred cccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEECCCCcC-CccCHHHhccCCCC
Confidence 33444 67777777665542 345666677777776665551 1112245566677777666542 21110 1123455
Q ss_pred eEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecc
Q 038350 239 RKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTS 318 (472)
Q Consensus 239 ~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~ 318 (472)
+.|.+++|.. ..+ ..-.+..+++|+.+++..+.-.. .....+..+++|++|+++++
T Consensus 136 ~~L~L~~n~l--~~~----------------~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 136 TYLNLAHNQL--QSL----------------PKGVFDKLTNLTELDLSYNQLQS------LPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECCSSCC--CCC----------------CTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcc--Ccc----------------CHHHhccCccCCEEECCCCCcCc------cCHHHhcCCccCCEEECCCC
Confidence 5555555531 110 00112334444444443321111 11133456677777777766
Q ss_pred cccccccccccccCCCcccCCceeEEEec
Q 038350 319 ALKIFPTECLLCGRQLFQFWQLEHLTLNT 347 (472)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 347 (472)
.+..+. + ..+..+.+|+.|.+..
T Consensus 192 ~l~~~~-----~-~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 192 QLKSVP-----D-GVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCSCCC-----T-TTTTTCTTCCEEECCS
T ss_pred cCCccC-----H-HHHhCCcCCCEEEccC
Confidence 544221 1 2344566777777654
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.39 E-value=1.3e-07 Score=98.72 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=41.2
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHH
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIA 209 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~ 209 (472)
++++.|.+... ....+|. ... +|++|+|++|.+..-. ..+++|++|+|+++.++. + -
T Consensus 61 ~~L~~L~L~~N-------------~l~~lp~---~l~-~L~~L~Ls~N~l~~lp-~~l~~L~~L~Ls~N~l~~--l---~ 117 (622)
T 3g06_A 61 AHITTLVIPDN-------------NLTSLPA---LPP-ELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLTH--L---P 117 (622)
T ss_dssp TTCSEEEECSC-------------CCSCCCC---CCT-TCCEEEECSCCCSCCC-CCCTTCCEEEECSCCCCC--C---C
T ss_pred CCCcEEEecCC-------------CCCCCCC---cCC-CCCEEEcCCCcCCcCC-CCCCCCCEEECcCCcCCC--C---C
Confidence 57888887532 2234554 234 7888888887665211 166777777777766552 1 1
Q ss_pred hcCCCcceEeeccc
Q 038350 210 HNCPFLETLSLVEC 223 (472)
Q Consensus 210 ~~cp~Le~L~l~~c 223 (472)
...++|+.|++.++
T Consensus 118 ~~l~~L~~L~L~~N 131 (622)
T 3g06_A 118 ALPSGLCKLWIFGN 131 (622)
T ss_dssp CCCTTCCEEECCSS
T ss_pred CCCCCcCEEECCCC
Confidence 13455666666554
No 84
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.37 E-value=2.1e-08 Score=96.55 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=79.9
Q ss_pred eEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE--EEeeCCCCeeEEEEee
Q 038350 168 CIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV--EITLRTLGLRKLIVRH 245 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~l~~ 245 (472)
+++.++++++.+..-+..-.++|++|+|.++.+..-. ...+.++++|+.|++.+|. +..+ .....+++|+.|.+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCC
Confidence 7889998888776321123479999999998776211 1236789999999999885 3333 1123467999999999
Q ss_pred ccCCceeEEE-eCCCeeEEEEeeeec----eEeecCCCceeEEEEEEe
Q 038350 246 CQSLSLGIEL-WLPRLQYFEYAGKMV----PFDMRGMDDLEVVVLDYR 288 (472)
Q Consensus 246 c~~~~~~~~i-~~p~L~~L~l~~~~~----~~~~~~~~~L~~l~l~~~ 288 (472)
+.. ..+.. ..++|++|.+++... .-.+.++++|+.+++...
T Consensus 112 n~l--~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 112 NHL--VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SCC--CSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred CcC--CccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 864 11110 127999999987422 123677899999988754
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.35 E-value=9.4e-08 Score=84.63 Aligned_cols=54 Identities=7% Similarity=0.080 Sum_probs=34.7
Q ss_pred eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
+|++|+++++.+.. +++..+++|++|++.++.+.+ +. .+..+++|+.|++.+|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YN-PISGLSNLERLRIMGKD 99 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CG-GGTTCTTCCEEEEECTT
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--ch-hhhcCCCCCEEEeECCc
Confidence 67777777776653 456677777777777765542 11 25566777777776654
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.35 E-value=3.9e-08 Score=91.88 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=103.3
Q ss_pred eEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEe
Q 038350 168 CIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVR 244 (472)
Q Consensus 168 ~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~ 244 (472)
+|++|.+.++.+. .+++..+++|++|+|+++.+.+ +. .+..+++|+.|++.+|. +..+.- ...+++|+.|.+.
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECC
Confidence 7899999988776 3557889999999999888873 22 36789999999999874 232221 1234567777776
Q ss_pred eccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccc
Q 038350 245 HCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFP 324 (472)
Q Consensus 245 ~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~ 324 (472)
+|.. ..+. +-.+..+++|+.+++..+.-.. .....+..+++|++|+++.+.+..+.
T Consensus 118 ~n~l--~~~~----------------~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 118 ENQL--QSLP----------------DGVFDKLTNLTYLNLAHNQLQS------LPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCC--CCCC----------------TTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcC--CccC----------------HHHhccCCCCCEEECCCCccCc------cCHHHhccCccCCEEECCCCCcCccC
Confidence 6642 1110 0112344445554444321111 11234567788888888877554321
Q ss_pred cccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 325 TECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 325 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
+ ..+..+.+|+.|.+..+.-.. .....+..+++|+.|++..+.
T Consensus 174 -----~-~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 174 -----E-GVFDKLTQLKDLRLYQNQLKS---VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp -----T-TTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSC
T ss_pred -----H-HHhcCCccCCEEECCCCcCCc---cCHHHHhCCcCCCEEEccCCC
Confidence 1 234566788888876432111 112346778888888887764
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.33 E-value=6e-08 Score=90.73 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=61.0
Q ss_pred cCCc-ccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-E
Q 038350 157 VLPH-FFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-I 231 (472)
Q Consensus 157 ~lp~-~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i 231 (472)
.++. .+..+. +|++|+|+++.+. +..+.++++|++|+|+++.++.-. ...+.++++|+.|++.++.-..... .
T Consensus 42 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~ 119 (276)
T 2z62_A 42 HLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFP 119 (276)
T ss_dssp EECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCC
T ss_pred ccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchh
Confidence 3444 444556 9999999998665 446889999999999998776221 1236789999999999875321111 1
Q ss_pred eeCCCCeeEEEEeecc
Q 038350 232 TLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 232 ~~~~~~L~~L~l~~c~ 247 (472)
...+++|+.|.++++.
T Consensus 120 ~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 120 IGHLKTLKELNVAHNL 135 (276)
T ss_dssp CTTCTTCCEEECCSSC
T ss_pred cccCCCCCEEECcCCc
Confidence 2234577777777765
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.33 E-value=6.7e-07 Score=81.60 Aligned_cols=151 Identities=10% Similarity=0.085 Sum_probs=90.2
Q ss_pred ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE--EeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEE
Q 038350 188 IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE--ITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEY 265 (472)
Q Consensus 188 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l 265 (472)
++|++|+|.++.++.- ....+.++++|+.|++.++..++.+. ....+++|+.|.+.+|. .+..+.
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~----------- 97 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYID----------- 97 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEEC-----------
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcC-----------
Confidence 4899999999877621 11236789999999999986555543 23445688888888743 222221
Q ss_pred eeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCc---EEEEecc-cccccccccccccCCCcccCCce
Q 038350 266 AGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDAR---ILQVSTS-ALKIFPTECLLCGRQLFQFWQLE 341 (472)
Q Consensus 266 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~ 341 (472)
.-.+.++++|+.+++....-.. ++. +..+++|+ +|+++++ .+..+.. ..+..+.+|+
T Consensus 98 -----~~~f~~l~~L~~L~l~~n~l~~-------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~------~~~~~l~~L~ 158 (239)
T 2xwt_C 98 -----PDALKELPLLKFLGIFNTGLKM-------FPD-LTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNET 158 (239)
T ss_dssp -----TTSEECCTTCCEEEEEEECCCS-------CCC-CTTCCBCCSEEEEEEESCTTCCEECT------TTTTTTBSSE
T ss_pred -----HHHhCCCCCCCEEeCCCCCCcc-------ccc-cccccccccccEEECCCCcchhhcCc------ccccchhcce
Confidence 1123344555555554332111 111 45666776 9999887 5553321 3355678888
Q ss_pred -eEEEecccCchhHHHHH-HHHhcCCCcceEEEEeC
Q 038350 342 -HLTLNTGLERFELAAII-CLLISSPNITTLAISTG 375 (472)
Q Consensus 342 -~L~l~~~~~~~~~~~l~-~ll~~~p~L~~L~i~~~ 375 (472)
.|.+..+.-. .++ ..+.. ++|+.|++..+
T Consensus 159 ~~L~l~~n~l~----~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 159 LTLKLYNNGFT----SVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCSCCCC----EECTTTTTT-CEEEEEECTTC
T ss_pred eEEEcCCCCCc----ccCHhhcCC-CCCCEEEcCCC
Confidence 8888643211 111 12344 89999999877
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.30 E-value=6.4e-08 Score=91.33 Aligned_cols=191 Identities=17% Similarity=0.059 Sum_probs=120.7
Q ss_pred eEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeecc
Q 038350 168 CIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 247 (472)
+++++++.++.+..-...-.++|+.|+|+++.++.-. ...+.+++.|+.|++.++. +..+.....+++|+.|.++++.
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC
T ss_pred CccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc
Confidence 7888888877665211122368899999888776211 1236678999999998875 4444444566789999998886
Q ss_pred C-CceeEEEeCCCeeEEEEeeeec-e---EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccc
Q 038350 248 S-LSLGIELWLPRLQYFEYAGKMV-P---FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKI 322 (472)
Q Consensus 248 ~-~~~~~~i~~p~L~~L~l~~~~~-~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~ 322 (472)
. .+.......++|++|.+++... . -.+.++++|+.+++....-.. .....+..+++|+.|+++.+.+..
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------LPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc------cChhhcccccCCCEEECCCCcCCc
Confidence 4 1222122467888888876422 1 235678888888776432211 122445678889999998876653
Q ss_pred cccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 323 FPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 323 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
++. ..+..+.+|+.|.+..+. ...++.-+...++|+.|.+..++
T Consensus 163 l~~------~~~~~l~~L~~L~L~~N~----l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 LPA------GLLNGLENLDTLLLQENS----LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCT------TTTTTCTTCCEEECCSSC----CCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCH------HHhcCcCCCCEEECCCCc----CCccChhhcccccCCeEEeCCCC
Confidence 321 234557788888886432 11333334556788888887764
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.30 E-value=1.1e-08 Score=97.77 Aligned_cols=203 Identities=15% Similarity=0.071 Sum_probs=100.7
Q ss_pred cCCcccccCCceEEEEEEeeeeec----CCCCC-------CcccccEEEeeeEEeChHHHHHH-HhcCCCcceEeecccC
Q 038350 157 VLPHFFYEQGMCIRVLNINSCGLG----LCNFV-------NFIQLTSLALTRVRLSWAAMENI-AHNCPFLETLSLVECY 224 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~~l~----~~~~~-------~~~~L~~L~L~~~~~~~~~l~~l-~~~cp~Le~L~l~~c~ 224 (472)
.+|..+.. .|++|+|+++.+. +..+. ++++|++|+|+++.+++.....+ +..+++|+.|++.++.
T Consensus 56 ~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 56 ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132 (312)
T ss_dssp CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC
Confidence 44554432 3666666666553 11112 57888888888887763222222 2677888888888764
Q ss_pred CceeEEEeeC-----CCCeeEEEEeeccC-Cce-eEEEeCCCeeEEEEeeeec--------eEeecCCCceeEEEEEEee
Q 038350 225 RIFKVEITLR-----TLGLRKLIVRHCQS-LSL-GIELWLPRLQYFEYAGKMV--------PFDMRGMDDLEVVVLDYRL 289 (472)
Q Consensus 225 ~~~~l~i~~~-----~~~L~~L~l~~c~~-~~~-~~~i~~p~L~~L~l~~~~~--------~~~~~~~~~L~~l~l~~~~ 289 (472)
-.+....... .++|+.|.++++.. ... ..--..++|++|++++... .+.+..+++|+.++++...
T Consensus 133 l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 2211000011 15788888887763 111 1112456777777765421 1122566677776665332
Q ss_pred cccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcce
Q 038350 290 DTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITT 369 (472)
Q Consensus 290 ~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~ 369 (472)
-.. .+.....++..+++|++|+++.+.+.... |...+..+.+|+.|.+..+.-. .++.-+. ++|+.
T Consensus 213 l~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~Ls~N~l~----~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 213 MET---PSGVCSALAAARVQLQGLDLSHNSLRDAA-----GAPSCDWPSQLNSLNLSFTGLK----QVPKGLP--AKLSV 278 (312)
T ss_dssp CCC---HHHHHHHHHHTTCCCSEEECTTSCCCSSC-----CCSCCCCCTTCCEEECTTSCCS----SCCSSCC--SEEEE
T ss_pred Ccc---hHHHHHHHHhcCCCCCEEECCCCcCCccc-----chhhhhhcCCCCEEECCCCccC----hhhhhcc--CCceE
Confidence 110 01123344556677777777666543211 1011223456666666533111 1111111 56666
Q ss_pred EEEEeCc
Q 038350 370 LAISTGA 376 (472)
Q Consensus 370 L~i~~~~ 376 (472)
|+++.+.
T Consensus 279 L~Ls~N~ 285 (312)
T 1wwl_A 279 LDLSYNR 285 (312)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 6666653
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.27 E-value=8.3e-08 Score=99.85 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=60.6
Q ss_pred cccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeE
Q 038350 162 FYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRK 240 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~ 240 (472)
+..+. +|++|+|++|.+.. +.+..+++|+.|+|+++.+.+ +. .+..+++|+.|+|.+|. +..+.-...+++|+.
T Consensus 61 l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 135 (605)
T 1m9s_A 61 IQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES 135 (605)
T ss_dssp GGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred HccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence 44556 88888888876652 226778888888888877763 22 36678888888888775 222322233567777
Q ss_pred EEEeeccCCceeEEEeCCCeeEEEEee
Q 038350 241 LIVRHCQSLSLGIELWLPRLQYFEYAG 267 (472)
Q Consensus 241 L~l~~c~~~~~~~~i~~p~L~~L~l~~ 267 (472)
|.+++|...........++|+.|.+++
T Consensus 136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 136 LYLGNNKITDITVLSRLTKLDTLSLED 162 (605)
T ss_dssp EECCSSCCCCCGGGGSCTTCSEEECCS
T ss_pred EECCCCccCCchhhcccCCCCEEECcC
Confidence 777777531000011344555555544
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.23 E-value=5.2e-08 Score=92.86 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=24.6
Q ss_pred eEEEEEEeeeeecC-------CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 168 CIRVLNINSCGLGL-------CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 168 ~L~~L~L~~~~l~~-------~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
+|++|+|+++.+.. ..+..+++|++|+|+++.+.. .....+.++++|+.|++.++.
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCT
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCC
Confidence 55555555554431 111335555555555554431 011123344555555555543
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.21 E-value=1.2e-07 Score=92.36 Aligned_cols=242 Identities=12% Similarity=0.029 Sum_probs=141.9
Q ss_pred CCcccccEEEeeeEEeCh---HHHHHHHhcCC-CcceEeecccCCceeEE---Eee---C-CCCeeEEEEeeccCCcee-
Q 038350 185 VNFIQLTSLALTRVRLSW---AAMENIAHNCP-FLETLSLVECYRIFKVE---ITL---R-TLGLRKLIVRHCQSLSLG- 252 (472)
Q Consensus 185 ~~~~~L~~L~L~~~~~~~---~~l~~l~~~cp-~Le~L~l~~c~~~~~l~---i~~---~-~~~L~~L~l~~c~~~~~~- 252 (472)
...++|++|+|+++.+++ ..+...+.++| .|++|++.+|. ++... +.. . .++|++|.+++|......
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 344559999999998874 34446677888 99999999985 33221 111 1 259999999999741111
Q ss_pred --E---EEeC-CCeeEEEEeeeec-eE---e----ecC-CCceeEEEEEEeecccccCchhhHHhhcccCC-CCcEEEEe
Q 038350 253 --I---ELWL-PRLQYFEYAGKMV-PF---D----MRG-MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFS-DARILQVS 316 (472)
Q Consensus 253 --~---~i~~-p~L~~L~l~~~~~-~~---~----~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~-~L~~L~l~ 316 (472)
+ .... ++|++|++++... .. . +.. ..+|+.++++.+.-.. .....+...+..++ +|++|+++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--KSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--HHHHHHHHHHhcCCccccEeeec
Confidence 0 0112 7999999987432 11 1 223 3589998887542211 11234555666666 99999999
Q ss_pred cccccccccccccccCCCccc-CCceeEEEeccc-CchhHHHHHHHHhc-CCCcceEEEEeCcccCCCCCCCCCCCCCcc
Q 038350 317 TSALKIFPTECLLCGRQLFQF-WQLEHLTLNTGL-ERFELAAIICLLIS-SPNITTLAISTGAIMHTPDFRPNYFPLSRG 393 (472)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~-~~~~~~~l~~ll~~-~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~ 393 (472)
++.+..... .... ..+..+ .+|+.|+++.+. .......+...+.. +++|+.|+++.+...... ..
T Consensus 176 ~n~l~~~~~-~~l~-~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~----------~~ 243 (362)
T 3goz_A 176 GNNLASKNC-AELA-KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS----------LE 243 (362)
T ss_dssp TSCGGGSCH-HHHH-HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC----------HH
T ss_pred CCCCchhhH-HHHH-HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH----------HH
Confidence 886643221 0001 122334 589999998653 22334456776666 679999999988422110 00
Q ss_pred ccccccc-ccccCccEEEEEeee---cChhhHHHHHHHHhcCccceEEEEeecc
Q 038350 394 EIWTTNG-SILDHLECVQFEGFT---GKICEIDLVKFLLRNSRSIKELNIKQLI 443 (472)
Q Consensus 394 ~~w~~~~-~~~~~L~~v~i~~f~---g~~~e~~~~~~ll~~~~~L~~l~i~~~~ 443 (472)
. .... ..+++|+.+.+.+-. -+...+..+..-+.+.+.|+.+.++...
T Consensus 244 ~--l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 244 N--LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp H--HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred H--HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 0 0011 156789999998754 2223333333344455666666665444
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.17 E-value=3.4e-07 Score=95.27 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=22.6
Q ss_pred eEEEEEEeeeeec-CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350 168 CIRVLNINSCGLG-LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC 223 (472)
Q Consensus 168 ~L~~L~L~~~~l~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 223 (472)
+|++|.|++|.+. ++.+..+++|+.|+|+++.+.+ +. -+..||+|+.|+|.+|
T Consensus 88 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 88 NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD--IN-GLVHLPQLESLYLGNN 141 (605)
T ss_dssp TCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC--CG-GGGGCTTCSEEECCSS
T ss_pred CCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC--Cc-cccCCCccCEEECCCC
Confidence 4444444444443 2234444444444444444431 11 1334444444444444
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.16 E-value=5.3e-07 Score=85.03 Aligned_cols=160 Identities=17% Similarity=0.130 Sum_probs=105.6
Q ss_pred eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350 168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC 246 (472)
Q Consensus 168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c 246 (472)
+|++|+++++.+.. +++..+++|++|+|+++.+++ +.. +..+++|+.|++.++. +..+.-...+++|+.|.+++|
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTS
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCC
Confidence 67788887776653 456778889999998887773 222 7788899999988775 333322334568888888888
Q ss_pred cC-CceeEEEeCCCeeEEEEeeeec-e-EeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccccc
Q 038350 247 QS-LSLGIELWLPRLQYFEYAGKMV-P-FDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIF 323 (472)
Q Consensus 247 ~~-~~~~~~i~~p~L~~L~l~~~~~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~ 323 (472)
.. .... ....++|+.|.+++... . -.+..+++|+.++++.+.-.. +.. +..+++|+.|+++.+.+..+
T Consensus 123 ~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-------~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 123 GISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-------IVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCChh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-------chh-hcCCCccCEEECCCCcCCCC
Confidence 64 1111 12467888888876422 1 235677888888776442211 112 67788999999988766543
Q ss_pred ccccccccCCCcccCCceeEEEecc
Q 038350 324 PTECLLCGRQLFQFWQLEHLTLNTG 348 (472)
Q Consensus 324 ~~~~~~~~~~l~~~~~L~~L~l~~~ 348 (472)
+ .+..+.+|+.|++..+
T Consensus 194 ~--------~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 194 R--------ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp G--------GGTTCTTCSEEEEEEE
T ss_pred h--------hhccCCCCCEEECcCC
Confidence 1 2456788888888754
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.14 E-value=2.8e-07 Score=87.77 Aligned_cols=189 Identities=14% Similarity=-0.015 Sum_probs=107.3
Q ss_pred eEEEEEEeeeeec---CCCC--CCcccccEEEeeeEEeChH--HHH-HHHhcCCCcceEeecccCCceeE-EEeeCCCCe
Q 038350 168 CIRVLNINSCGLG---LCNF--VNFIQLTSLALTRVRLSWA--AME-NIAHNCPFLETLSLVECYRIFKV-EITLRTLGL 238 (472)
Q Consensus 168 ~L~~L~L~~~~l~---~~~~--~~~~~L~~L~L~~~~~~~~--~l~-~l~~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L 238 (472)
+|++|+|+++.+. |..+ ..+++|++|+|+++.+.+. .+. .-+..+++|+.|++.+|.-.... .....+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 4666666666543 3334 6678888888888777631 111 12336788888888876532111 112235678
Q ss_pred eEEEEeeccC-C---c--eeEEEeCCCeeEEEEeeeece---E----eecCCCceeEEEEEEeecccccCchhhHHhhcc
Q 038350 239 RKLIVRHCQS-L---S--LGIELWLPRLQYFEYAGKMVP---F----DMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFN 305 (472)
Q Consensus 239 ~~L~l~~c~~-~---~--~~~~i~~p~L~~L~l~~~~~~---~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~ 305 (472)
+.|.++++.. + . .......|+|++|.+++.... - .+..+++|+.++++...-... .+..+.
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~------~p~~~~ 245 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT------VNPSAP 245 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC------CCSCCS
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc------chhhHH
Confidence 8888887752 1 0 011124567888877664221 0 134567777777764322111 011122
Q ss_pred c---CCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 306 P---FSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 306 ~---l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
. +++|++|+++.+.+..+ | ..+ +.+|+.|+++.+.-. +++ .+..+|+|+.|+++.+.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~l------p-~~~--~~~L~~L~Ls~N~l~----~~~-~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQV------P-KGL--PAKLRVLDLSSNRLN----RAP-QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSC------C-SCC--CSCCSCEECCSCCCC----SCC-CTTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCCCCCCch------h-hhh--cCCCCEEECCCCcCC----CCc-hhhhCCCccEEECcCCC
Confidence 3 37899999988866532 2 223 368899988754211 111 25778999999998774
No 97
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.13 E-value=9.6e-07 Score=75.77 Aligned_cols=72 Identities=17% Similarity=-0.000 Sum_probs=40.2
Q ss_pred cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCC
Q 038350 304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHT 380 (472)
Q Consensus 304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~ 380 (472)
+..+++|++|+++.+.+..++. + ..+..+.+|++|.+..+.-..........+..+|+|+.|++..+.....
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~----~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDIST----L-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGG----G-GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred HhhCCCCCEEeccCCccCcchh----H-HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 3446667777776665443211 1 1234456677777654311111112234678899999999998864433
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.11 E-value=1.2e-06 Score=80.57 Aligned_cols=88 Identities=22% Similarity=0.163 Sum_probs=56.7
Q ss_pred cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE- 230 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~- 230 (472)
...+|..+. . ++++|+|+++.+. +..+.++++|++|+|+++.+..- ....+..+++|+.|++.++. +..+.
T Consensus 26 l~~~p~~~~--~-~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~ 100 (251)
T 3m19_A 26 LDSVPSGIP--A-DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPL 100 (251)
T ss_dssp CSSCCSCCC--T-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCT
T ss_pred ccccCCCCC--C-CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccCh
Confidence 345665542 3 7899999988765 34578899999999998877631 12235678899999998765 22221
Q ss_pred -EeeCCCCeeEEEEeecc
Q 038350 231 -ITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 231 -i~~~~~~L~~L~l~~c~ 247 (472)
....+++|+.|.++++.
T Consensus 101 ~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hHhcccCCCCEEEcCCCc
Confidence 11223466666665554
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.09 E-value=1e-06 Score=85.41 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=61.4
Q ss_pred cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE- 230 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~- 230 (472)
...+|..+. . ++++|+|+++.+. +..|.++++|++|+|+++.+...--...+.+++.|+++.+..+..+..+.
T Consensus 21 Lt~iP~~l~--~-~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 21 VTEIPSDLP--R-NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CCSCCTTCC--T-TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCccCcCcC--C-CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 445676552 3 7999999998765 34588999999999998865311001235678888877766666665552
Q ss_pred -EeeCCCCeeEEEEeeccC
Q 038350 231 -ITLRTLGLRKLIVRHCQS 248 (472)
Q Consensus 231 -i~~~~~~L~~L~l~~c~~ 248 (472)
....+++|+.|.+.++..
T Consensus 98 ~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp TSBCCCTTCCEEEEEEECC
T ss_pred hhhhhcccccccccccccc
Confidence 223456888888888763
No 100
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=1.7e-06 Score=83.88 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=38.0
Q ss_pred CcccccEEEeeeEEeC--------hHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeecc
Q 038350 186 NFIQLTSLALTRVRLS--------WAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 186 ~~~~L~~L~L~~~~~~--------~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 247 (472)
.+++|+.|.+..+.+. ..++..++..+|+|++|.|.+|.++.-..+. .++|++|.+..|.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG 204 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC
Confidence 4566777766543221 1246788899999999999987433211122 3577777777665
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.01 E-value=8e-07 Score=81.80 Aligned_cols=78 Identities=13% Similarity=-0.053 Sum_probs=48.4
Q ss_pred eEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEee
Q 038350 168 CIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVRH 245 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~ 245 (472)
+.+++++++..+..-...-.++|++|+|.++.+..-. ...+.++++|+.|++.++. +..+.. ...+++|+.|.+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCC
Confidence 5677777777665211122368999999998876211 1236688999999999874 222211 12345666666666
Q ss_pred cc
Q 038350 246 CQ 247 (472)
Q Consensus 246 c~ 247 (472)
+.
T Consensus 93 n~ 94 (251)
T 3m19_A 93 NQ 94 (251)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.99 E-value=4.6e-06 Score=83.76 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=17.4
Q ss_pred eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeC
Q 038350 168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~ 201 (472)
+|++|+++++.+.. +.+.++++|++|+++++.++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCc
Confidence 55555555554431 23455555555555555443
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.99 E-value=1.2e-06 Score=91.58 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=65.9
Q ss_pred hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCC
Q 038350 302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTP 381 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~ 381 (472)
..+..+++|++|+++++.+..+ .| ..+..+.+|+.|.|+.+.-.. ..+..+..+++|+.|+|+.+.....+
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l-----~~-~~f~~l~~L~~L~Ls~N~l~~---l~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQL-----SP-TAFNSLSSLQVLNMSHNNFFS---LDTFPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEE-----CT-TTTTTCTTCCEEECTTSCCCB---CCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred hhhhhccccCEEECCCCccCCc-----Ch-HHHcCCCCCCEEECCCCcCCC---CChhHHhCCCCCCEEECCCCcCCCCC
Confidence 4566778888888887765532 22 445667788888886432110 11224677888888888877533221
Q ss_pred CCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHHhcCc
Q 038350 382 DFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLLRNSR 432 (472)
Q Consensus 382 ~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~~~~ 432 (472)
+..+. . ..++|+.+.+.| |.++++..+|..++-++..
T Consensus 559 ----------~~~l~--~--l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 559 ----------KQELQ--H--FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp ----------SSCTT--C--CCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred ----------HHHHH--h--hhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence 00110 0 225799999876 7777777778777655443
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.99 E-value=9.5e-07 Score=75.82 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=63.7
Q ss_pred cCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---EEe
Q 038350 157 VLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---EIT 232 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~ 232 (472)
.+|..+..+. +|++|+|++|.+.. ..+..+++|++|+|+++.+.+. +...+..+|+|+.|++.+|. +..+ ...
T Consensus 40 ~i~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l 116 (168)
T 2ell_A 40 KIEGLTAEFV-NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPL 116 (168)
T ss_dssp BCSSCCGGGG-GCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGG
T ss_pred hHHHHHHhCC-CCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHH
Confidence 5666655666 99999999987763 5568899999999999988732 55667779999999999884 3332 122
Q ss_pred eCCCCeeEEEEeecc
Q 038350 233 LRTLGLRKLIVRHCQ 247 (472)
Q Consensus 233 ~~~~~L~~L~l~~c~ 247 (472)
..+++|+.|.+++|.
T Consensus 117 ~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 117 KKLECLKSLDLFNCE 131 (168)
T ss_dssp SSCSCCCEEECCSSG
T ss_pred hcCCCCCEEEeeCCc
Confidence 335577777777765
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.92 E-value=8.9e-07 Score=74.31 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=9.3
Q ss_pred HHHhcCCCcceEEE
Q 038350 359 CLLISSPNITTLAI 372 (472)
Q Consensus 359 ~ll~~~p~L~~L~i 372 (472)
..+..+|+|+.|++
T Consensus 134 ~~~~~l~~L~~L~l 147 (149)
T 2je0_A 134 NVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHHCTTCCEETT
T ss_pred HHHHHCCCcccccC
Confidence 35667777777754
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.89 E-value=2.8e-06 Score=78.80 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=34.9
Q ss_pred eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
+|++|+++++.+.. +++..+++|++|+|+++.+++ +.. +..+++|+.|++.++.
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSC
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCc
Confidence 67777777665542 345667777777777776662 112 6667777777777664
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.89 E-value=3.3e-06 Score=87.01 Aligned_cols=182 Identities=14% Similarity=0.027 Sum_probs=114.8
Q ss_pred HHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHH
Q 038350 128 LEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMEN 207 (472)
Q Consensus 128 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~ 207 (472)
...+++.|.+.. +....+|..++ . +|++|+|+++.+..-. ..+++|++|+|+++.++. +..
T Consensus 57 ~~~~L~~L~Ls~-------------n~L~~lp~~l~--~-~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~--ip~ 117 (571)
T 3cvr_A 57 LINQFSELQLNR-------------LNLSSLPDNLP--P-QITVLEITQNALISLP-ELPASLEYLDACDNRLST--LPE 117 (571)
T ss_dssp HHTTCSEEECCS-------------SCCSCCCSCCC--T-TCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC--CCC
T ss_pred ccCCccEEEeCC-------------CCCCccCHhHc--C-CCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC--cch
Confidence 346888888753 22334777653 4 8999999999887422 668999999999998873 333
Q ss_pred HHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeec-eEe-ecCCCceeEEEE
Q 038350 208 IAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMV-PFD-MRGMDDLEVVVL 285 (472)
Q Consensus 208 l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~-~~~-~~~~~~L~~l~l 285 (472)
+ +.+|+.|++.++. +..+.- .+++|+.|.++++.. ..+....++|++|.+++... .+. +. ++|+.+++
T Consensus 118 -l--~~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l--~~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~L 187 (571)
T 3cvr_A 118 -L--PASLKHLDVDNNQ-LTMLPE--LPALLEYINADNNQL--TMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDV 187 (571)
T ss_dssp -C--CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEEC
T ss_pred -h--hcCCCEEECCCCc-CCCCCC--cCccccEEeCCCCcc--CcCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEEC
Confidence 2 2399999999875 333322 467999999999874 22222567999999987421 111 22 77888887
Q ss_pred EEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecc
Q 038350 286 DYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG 348 (472)
Q Consensus 286 ~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 348 (472)
+...-..... ....+....+.++.|+++++.+..+ | ..+..+.+|+.|++..+
T Consensus 188 s~N~L~~lp~---~~~~L~~~~~~L~~L~Ls~N~l~~l------p-~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 188 STNLLESLPA---VPVRNHHSEETEIFFRCRENRITHI------P-ENILSLDPTCTIILEDN 240 (571)
T ss_dssp CSSCCSSCCC---CC--------CCEEEECCSSCCCCC------C-GGGGGSCTTEEEECCSS
T ss_pred cCCCCCchhh---HHHhhhcccccceEEecCCCcceec------C-HHHhcCCCCCEEEeeCC
Confidence 7542211110 0001111222339999988876543 3 34455888999998765
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.88 E-value=3.6e-06 Score=84.57 Aligned_cols=196 Identities=15% Similarity=0.048 Sum_probs=121.9
Q ss_pred CCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHh
Q 038350 131 SVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAH 210 (472)
Q Consensus 131 ~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~ 210 (472)
.++.|.+.. +....+| .+..+. +|++|+++++.+..-. ...++|++|+++++.+. .+.. +.
T Consensus 174 ~L~~L~L~~-------------n~l~~l~-~~~~l~-~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~n~l~--~lp~-~~ 234 (454)
T 1jl5_A 174 SLEFIAAGN-------------NQLEELP-ELQNLP-FLTAIYADNNSLKKLP-DLPLSLESIVAGNNILE--ELPE-LQ 234 (454)
T ss_dssp TCCEEECCS-------------SCCSSCC-CCTTCT-TCCEEECCSSCCSSCC-CCCTTCCEEECCSSCCS--SCCC-CT
T ss_pred cccEEECcC-------------CcCCcCc-cccCCC-CCCEEECCCCcCCcCC-CCcCcccEEECcCCcCC--cccc-cC
Confidence 677777642 2223355 355566 9999999998776311 12368999999988776 2333 66
Q ss_pred cCCCcceEeecccCCceeEEEeeCCCCeeEEEEeeccCCceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeec
Q 038350 211 NCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHCQSLSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLD 290 (472)
Q Consensus 211 ~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~ 290 (472)
.+++|+.|++.++.- ..+ +...++|+.|.+++|.. ..+....++|++|++++....-.-.-.++|+.++++...-
T Consensus 235 ~l~~L~~L~l~~N~l-~~l--~~~~~~L~~L~l~~N~l--~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 235 NLPFLTTIYADNNLL-KTL--PDLPPSLEALNVRDNYL--TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp TCTTCCEEECCSSCC-SSC--CSCCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcC-Ccc--cccccccCEEECCCCcc--cccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 899999999998752 222 12235999999998864 2222234789999987743211001135688777663321
Q ss_pred ccccCchhhHHhhcccC-CCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcce
Q 038350 291 TRYSYNGDDIESLFNPF-SDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITT 369 (472)
Q Consensus 291 ~~~~~~~~~~~~ll~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~ 369 (472)
. . +..+ ++|++|+++.+.+..+ | . .+.+|+.|++..+.-. .++. .+++|+.
T Consensus 310 ~----------~-i~~~~~~L~~L~Ls~N~l~~l------p-~---~~~~L~~L~L~~N~l~----~lp~---~l~~L~~ 361 (454)
T 1jl5_A 310 R----------S-LCDLPPSLEELNVSNNKLIEL------P-A---LPPRLERLIASFNHLA----EVPE---LPQNLKQ 361 (454)
T ss_dssp S----------E-ECCCCTTCCEEECCSSCCSCC------C-C---CCTTCCEEECCSSCCS----CCCC---CCTTCCE
T ss_pred C----------c-ccCCcCcCCEEECCCCccccc------c-c---cCCcCCEEECCCCccc----cccc---hhhhccE
Confidence 1 1 1233 5899999988765432 2 1 2578899998754211 1222 4789999
Q ss_pred EEEEeCccc
Q 038350 370 LAISTGAIM 378 (472)
Q Consensus 370 L~i~~~~~~ 378 (472)
|+++.+...
T Consensus 362 L~L~~N~l~ 370 (454)
T 1jl5_A 362 LHVEYNPLR 370 (454)
T ss_dssp EECCSSCCS
T ss_pred EECCCCCCC
Confidence 999887543
No 109
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.84 E-value=1.1e-06 Score=85.90 Aligned_cols=75 Identities=16% Similarity=0.038 Sum_probs=41.8
Q ss_pred HHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 300 IESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 300 ~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
+...+..+++|++|+|+.+.+..... ...+ ..+....+|+.|++..+. .......+...++.+|+|+.|+|+.+.
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~-~~L~-~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGL-ELLA-AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHH-HHHH-HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHH-HHHH-HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 33445566677777776665432110 0011 223344567777776542 222344566667788888888887763
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.83 E-value=9.3e-07 Score=74.21 Aligned_cols=88 Identities=26% Similarity=0.316 Sum_probs=64.5
Q ss_pred cCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---EEe
Q 038350 157 VLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---EIT 232 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~i~ 232 (472)
.+|..+..+. +|++|++++|.+.. ..+..+++|++|+|+++.+++. +...+..+++|+.|++.+|. +..+ ...
T Consensus 33 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~ 109 (149)
T 2je0_A 33 KLEGLTDEFE-ELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPL 109 (149)
T ss_dssp BCCSCCTTCT-TCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGG
T ss_pred HHHHHHhhcC-CCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHH
Confidence 4666555666 89999999887763 5578899999999999988732 56667789999999999875 3332 222
Q ss_pred eCCCCeeEEEEeecc
Q 038350 233 LRTLGLRKLIVRHCQ 247 (472)
Q Consensus 233 ~~~~~L~~L~l~~c~ 247 (472)
..+++|+.|.+++|.
T Consensus 110 ~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 110 KKLENLKSLDLFNCE 124 (149)
T ss_dssp GGCTTCCEEECTTCG
T ss_pred hhCCCCCEEeCcCCc
Confidence 345678888877775
No 111
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.80 E-value=2.1e-06 Score=78.77 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=35.1
Q ss_pred CCCCchHHHHHHHhcCChhhHhhhhhhccccc----cccccccc
Q 038350 8 LSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHC 47 (472)
Q Consensus 8 is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~ 47 (472)
|+.||+||+.+|||||+.+|+++++.|||+|| |..+|+..
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~ 48 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 66899999999999999999999999999999 33457654
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.79 E-value=2.4e-05 Score=81.65 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=110.0
Q ss_pred ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHH-HHHHhcCCCcceEeecccCCceeEEE
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAM-ENIAHNCPFLETLSLVECYRIFKVEI 231 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l-~~l~~~cp~Le~L~l~~c~~~~~l~i 231 (472)
..+|..+ +.++++|+|+++.+. +..|.++++|++|+|+++.++. + ...+.++++|++|+|.++. +..+..
T Consensus 44 ~~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~-l~~l~~ 117 (635)
T 4g8a_A 44 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNP-IQSLAL 117 (635)
T ss_dssp SSCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCC-CCEECG
T ss_pred CccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCc-CCCCCH
Confidence 4455543 227899999988664 4568899999999999887761 1 1236778999999999875 444332
Q ss_pred --eeCCCCeeEEEEeeccC-CceeEE-EeCCCeeEEEEeeeec-----eEeecCCCceeEEEEEEeecccccCchhhHHh
Q 038350 232 --TLRTLGLRKLIVRHCQS-LSLGIE-LWLPRLQYFEYAGKMV-----PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIES 302 (472)
Q Consensus 232 --~~~~~~L~~L~l~~c~~-~~~~~~-i~~p~L~~L~l~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 302 (472)
...+++|++|.+.+|.. .+.... -..++|++|++++... +-.+..+++|+.+++....-.... ...+..
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~ 195 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--CTDLRV 195 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC--GGGGHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc--cccccc
Confidence 23466888888888763 121111 2356777777765321 122345666666665532111100 001111
Q ss_pred hcccCC-CCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 303 LFNPFS-DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 303 ll~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
+..++ ....+.++.+.+..+ + ........+..|.+..+. .........+...+.++...+...
T Consensus 196 -L~~l~~~~~~~~ls~n~l~~i------~-~~~~~~~~~~~l~l~~n~--~~~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 196 -LHQMPLLNLSLDLSLNPMNFI------Q-PGAFKEIRLHKLTLRNNF--DSLNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp -HHTCTTCCCEEECTTCCCCEE------C-TTTTTTCEEEEEEEESCC--SSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -hhhhhhhhhhhhcccCccccc------C-cccccchhhhhhhhhccc--ccccccchhhcCCccccccccccc
Confidence 11111 223444444433221 1 112223344555554432 223455566788888887777554
No 113
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=2.1e-06 Score=73.67 Aligned_cols=80 Identities=10% Similarity=0.231 Sum_probs=58.0
Q ss_pred CcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE---ee---CCCCeeEEEEeeccC----CceeEEE
Q 038350 186 NFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI---TL---RTLGLRKLIVRHCQS----LSLGIEL 255 (472)
Q Consensus 186 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i---~~---~~~~L~~L~l~~c~~----~~~~~~i 255 (472)
.-..|+.|+|++|.+++.++..+ ++|+.|+.|+|.+|..+++.-+ .. .+++|++|++++|.. ++..+.
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 34579999999999999999885 7999999999999988775322 21 124799999999972 122221
Q ss_pred eCCCeeEEEEee
Q 038350 256 WLPRLQYFEYAG 267 (472)
Q Consensus 256 ~~p~L~~L~l~~ 267 (472)
.+|+|++|.+++
T Consensus 137 ~~~~L~~L~L~~ 148 (176)
T 3e4g_A 137 HFRNLKYLFLSD 148 (176)
T ss_dssp GCTTCCEEEEES
T ss_pred cCCCCCEEECCC
Confidence 356666666654
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.79 E-value=6.6e-06 Score=76.20 Aligned_cols=95 Identities=12% Similarity=-0.021 Sum_probs=61.0
Q ss_pred eEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEeec
Q 038350 168 CIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRHC 246 (472)
Q Consensus 168 ~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c 246 (472)
.++.+.++++.+.. +.+..+++|++|++.++.+++ +. -+..+++|+.|++.++. +..+.-...+++|+.|.++++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCC
Confidence 34444444444432 235788999999999988872 22 36789999999999875 333221344678999999888
Q ss_pred cC-CceeEEEeCCCeeEEEEeee
Q 038350 247 QS-LSLGIELWLPRLQYFEYAGK 268 (472)
Q Consensus 247 ~~-~~~~~~i~~p~L~~L~l~~~ 268 (472)
.. ....+.. ++|++|.+++.
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N 116 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNN 116 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSS
T ss_pred ccCCcCcccc--CcccEEEccCC
Confidence 64 1111111 67777777653
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.77 E-value=4.3e-05 Score=78.64 Aligned_cols=171 Identities=18% Similarity=0.103 Sum_probs=98.1
Q ss_pred eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEEeeCCCCeeEEEEee
Q 038350 168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEITLRTLGLRKLIVRH 245 (472)
Q Consensus 168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~ 245 (472)
+|++|+|+++.+. |..+ +++|++|+|+++.++ .+. ..+++|+.|++.++. +..+.... .+|+.|.+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~-l~~ip~l~--~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNR-LSTLPELP--ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSC-CSCCCCCC--TTCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCC-CCCcchhh--cCCCEEECCC
Confidence 6788888877665 2222 477888888877776 222 457888888888764 33332211 2788888887
Q ss_pred ccC-CceeEEEeCCCeeEEEEeeeec-eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccccccc
Q 038350 246 CQS-LSLGIELWLPRLQYFEYAGKMV-PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIF 323 (472)
Q Consensus 246 c~~-~~~~~~i~~p~L~~L~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~ 323 (472)
+.. .+.. ..++|+.|.+++... .+.- .+++|+.++++.+.-.. ++. +. ++|+.|+++++.+..+
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~-------lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTF-------LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-------CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCC-------cch-hh--CCCCEEECcCCCCCch
Confidence 764 2222 567788888776422 1111 45677777766442211 111 22 6788888877765432
Q ss_pred ccccccccCCCcccCCc-------eeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 324 PTECLLCGRQLFQFWQL-------EHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 324 ~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
| . +.. +| +.|.+..+. ...++.-+..+++|+.|+|+.+.
T Consensus 196 ------p-~-~~~--~L~~~~~~L~~L~Ls~N~----l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 196 ------P-A-VPV--RNHHSEETEIFFRCRENR----ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ------C-C-CC----------CCEEEECCSSC----CCCCCGGGGGSCTTEEEECCSSS
T ss_pred ------h-h-HHH--hhhcccccceEEecCCCc----ceecCHHHhcCCCCCEEEeeCCc
Confidence 2 1 211 45 777775431 11334434457888888887764
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.72 E-value=3.2e-05 Score=74.72 Aligned_cols=212 Identities=13% Similarity=0.080 Sum_probs=121.2
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeee-c---CCCCCCcccccEEEe-eeEEeChHH
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGL-G---LCNFVNFIQLTSLAL-TRVRLSWAA 204 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l-~---~~~~~~~~~L~~L~L-~~~~~~~~~ 204 (472)
+++++|.+.. +....+|...|...++|++|+|+++.+ . +..|.++++|+++.. ..+.+.. -
T Consensus 30 ~~l~~L~Ls~-------------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l 95 (350)
T 4ay9_X 30 RNAIELRFVL-------------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-I 95 (350)
T ss_dssp TTCSEEEEES-------------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-E
T ss_pred CCCCEEEccC-------------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-c
Confidence 5788888763 344567776554333999999999854 2 345788888887554 4444441 0
Q ss_pred HHHHHhcCCCcceEeecccCCceeEEE-eeCCCCeeEEEEeeccCCceeEEEe-----CCCeeEEEEeeeec-eEe--ec
Q 038350 205 MENIAHNCPFLETLSLVECYRIFKVEI-TLRTLGLRKLIVRHCQSLSLGIELW-----LPRLQYFEYAGKMV-PFD--MR 275 (472)
Q Consensus 205 l~~l~~~cp~Le~L~l~~c~~~~~l~i-~~~~~~L~~L~l~~c~~~~~~~~i~-----~p~L~~L~l~~~~~-~~~--~~ 275 (472)
....+.++++|+.|++.++.-...... .....++..|.+.++. .+..+... ..+++.|.+++... .+. ..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhc
Confidence 012367899999999998752211111 1123467778877765 33333221 23678888876422 221 12
Q ss_pred CCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHH
Q 038350 276 GMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELA 355 (472)
Q Consensus 276 ~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 355 (472)
...+|.++.+...... . ......+..+++|+.|+++.+.+..++ . ..|.+|++|.+..+..-.
T Consensus 175 ~~~~L~~l~l~~~n~l--~---~i~~~~f~~l~~L~~LdLs~N~l~~lp-------~--~~~~~L~~L~~l~~~~l~--- 237 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNL--E---ELPNDVFHGASGPVILDISRTRIHSLP-------S--YGLENLKKLRARSTYNLK--- 237 (350)
T ss_dssp TTEEEEEEECTTCTTC--C---CCCTTTTTTEECCSEEECTTSCCCCCC-------S--SSCTTCCEEECTTCTTCC---
T ss_pred cccchhHHhhccCCcc--c---CCCHHHhccCcccchhhcCCCCcCccC-------h--hhhccchHhhhccCCCcC---
Confidence 3344555544321110 0 011245678899999999988765432 1 236777888754321111
Q ss_pred HHHHHHhcCCCcceEEEEe
Q 038350 356 AIICLLISSPNITTLAIST 374 (472)
Q Consensus 356 ~l~~ll~~~p~L~~L~i~~ 374 (472)
.++. +..+++|+.+++..
T Consensus 238 ~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-TTTCCSCCEEECSC
T ss_pred cCCC-chhCcChhhCcCCC
Confidence 2221 56778888888743
No 117
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.72 E-value=6.9e-05 Score=72.59 Aligned_cols=133 Identities=17% Similarity=0.070 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEEEEeCC-CcchHhHHHHHHHH-HHCCCcEEEEEeeCCCCCCCCCCCCCCcccCCccc
Q 038350 85 KYFHFVDRAVCRLASEFLTKFSFRLYYSS-NIYRQNIDKWIEIV-LEKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFF 162 (472)
Q Consensus 85 ~~~~~v~~~l~~~~~~~l~~l~l~~~~~~-~~~~~~i~~wl~~~-~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~ 162 (472)
.+.+.+.+++.......|+.+.+....+. +.....+..+...+ .-++++.|.+....... .+........++..+
T Consensus 92 ~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~---~~is~~~~~~L~~ll 168 (362)
T 2ra8_A 92 EGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEE---QEISWIEQVDLSPVL 168 (362)
T ss_dssp TTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTT---CCGGGCBCCBCHHHH
T ss_pred cHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhh---cccccccccCHHHHH
Confidence 33445555666444456777777644322 10123444444422 23799999874211000 000000011233444
Q ss_pred ccCCceEEEEEEeeee-ecCCCCCCcccccEEEeeeEEeChHHHHHHHh-cCCCcceEeecc
Q 038350 163 YEQGMCIRVLNINSCG-LGLCNFVNFIQLTSLALTRVRLSWAAMENIAH-NCPFLETLSLVE 222 (472)
Q Consensus 163 ~~~~~~L~~L~L~~~~-l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~cp~Le~L~l~~ 222 (472)
-.++ +|++|.|.++. +..+.+ ..++|++|.|..+.++++.+..+.. .+|+|+.|.|..
T Consensus 169 ~~~P-~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 169 DAMP-LLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HTCT-TCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred hcCC-CCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 4456 99999998872 333333 4899999999999998888887664 699999999864
No 118
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.70 E-value=1.1e-05 Score=74.80 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCCCCCchHHHHHHHhcCChhhHh-hhhhhccccc
Q 038350 6 DPLSDFHDDLIIVIITFLPFIDAY-RLCMSKKKWY 39 (472)
Q Consensus 6 D~is~LPd~iL~~Ils~L~~~d~~-r~s~vSkrWr 39 (472)
..+..||||||..||++||.++++ |++.|||+|+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr 83 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWK 83 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHH
Confidence 468899999999999999999999 9999999999
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.69 E-value=1.6e-06 Score=77.30 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=59.1
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE 230 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~ 230 (472)
....+|..+ .. +|++|+|+++.+. +..+.++++|++|+|.++.++. .....+..+++|+.|++.++. +..+.
T Consensus 18 ~l~~~p~~~--~~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 92 (208)
T 2o6s_A 18 GRTSVPTGI--PA-QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQSLP 92 (208)
T ss_dssp CCSSCCSCC--CT-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred CccCCCCCC--CC-CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCc-CCccC
Confidence 344556544 23 7899999988775 2346789999999999887762 112335678999999998874 23221
Q ss_pred E--eeCCCCeeEEEEeecc
Q 038350 231 I--TLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 231 i--~~~~~~L~~L~l~~c~ 247 (472)
- ...+++|+.|.++++.
T Consensus 93 ~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HhHhcCccCCCEEEcCCCc
Confidence 1 1234677788777765
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.64 E-value=3.7e-05 Score=69.02 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=45.2
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
....+|..+. . +|++|+|+++.+. +..+.++++|++|+|+++.+..- ....+.++++|+.|+|.++.
T Consensus 22 ~l~~iP~~l~--~-~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 22 GLTEIPTNLP--E-TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp CCSSCCSSCC--T-TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSC
T ss_pred CcCcCCCccC--c-CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCc
Confidence 3445666542 3 7888998888665 34678888999999988876521 11235667888888887754
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.59 E-value=2.2e-05 Score=71.02 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=43.5
Q ss_pred cccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
...+|..+. . +|++|+|+++.+. +..+.++++|++|+|+++.+..- ....+.++++|+.|+|.++.
T Consensus 31 l~~ip~~~~--~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 31 HASVPAGIP--T-NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp CSSCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCccCCCCC--C-CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCc
Confidence 345555442 3 7888888888665 34567888888888888776511 11235667888888887763
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.59 E-value=1.4e-05 Score=69.07 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=32.1
Q ss_pred ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
..+++|++|+++.+.+..++. . ..+..+.+|+.|.+..+.-......-..++..+|+|+.|+++...
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~----~-~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGD----L-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGG----G-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCCcchh----h-HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 345555555555554332210 0 123344555555554321110011122356788888888887764
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.52 E-value=1.8e-05 Score=70.32 Aligned_cols=163 Identities=15% Similarity=0.045 Sum_probs=89.9
Q ss_pred EEEEeeeeecCCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEeeccC
Q 038350 171 VLNINSCGLGLCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVRHCQS 248 (472)
Q Consensus 171 ~L~L~~~~l~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~ 248 (472)
.++..+..+..-...-.++|++|+|.++.++. .....+.++++|+.|++.++. +..+.. ...+++|+.|.+.++..
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcC
Confidence 44444444443222345789999999988762 112336789999999999874 332221 12345777777776642
Q ss_pred CceeEEEeCCCeeEEEEeeeeceEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccc
Q 038350 249 LSLGIELWLPRLQYFEYAGKMVPFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECL 328 (472)
Q Consensus 249 ~~~~~~i~~p~L~~L~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~ 328 (472)
..+. ...+.++++|+.+++....-.. .....+..+++|++|+++.+.+..+.
T Consensus 89 --~~~~----------------~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~l~~~~---- 140 (208)
T 2o6s_A 89 --QSLP----------------NGVFDKLTQLKELALNTNQLQS------LPDGVFDKLTQLKDLRLYQNQLKSVP---- 140 (208)
T ss_dssp --CCCC----------------TTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCSCCC----
T ss_pred --CccC----------------HhHhcCccCCCEEEcCCCcCcc------cCHhHhccCCcCCEEECCCCccceeC----
Confidence 1110 0112344445554443221111 11134567788888888877554322
Q ss_pred cccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 329 LCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 329 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
+ ..+..+.+|+.|.+..+. +...||+|+.|.+...
T Consensus 141 -~-~~~~~l~~L~~L~l~~N~----------~~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 141 -D-GVFDRLTSLQYIWLHDNP----------WDCTCPGIRYLSEWIN 175 (208)
T ss_dssp -T-TTTTTCTTCCEEECCSCC----------BCCCTTTTHHHHHHHH
T ss_pred -H-HHhccCCCccEEEecCCC----------eecCCCCHHHHHHHHH
Confidence 1 234556788888876431 1245777777776554
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=3.9e-05 Score=73.46 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=48.6
Q ss_pred CCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCce-eEEEecccCchhHH
Q 038350 277 MDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLE-HLTLNTGLERFELA 355 (472)
Q Consensus 277 ~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~ 355 (472)
+++|+.+++....... .....+.+|++|+.|++..+ +..+.. ..+..+.+|+ .+.+........
T Consensus 225 ~~~L~~l~L~~n~i~~------I~~~aF~~~~~L~~l~l~~n-i~~I~~------~aF~~~~~L~~~l~l~~~l~~I~-- 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT------IPDFTFAQKKYLLKIKLPHN-LKTIGQ------RVFSNCGRLAGTLELPASVTAIE-- 289 (329)
T ss_dssp CTTCCEEECTTBCCCE------ECTTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEEEECTTCCEEC--
T ss_pred cCCCeEEECCCCCcce------ecHhhhhCCCCCCEEECCcc-cceehH------HHhhCChhccEEEEEcccceEEc--
Confidence 6777777665321110 11245678888999988765 333221 3455677787 888754221110
Q ss_pred HHHHHHhcCCCcceEEEEeCc
Q 038350 356 AIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 356 ~l~~ll~~~p~L~~L~i~~~~ 376 (472)
...|.+|++|+.|++....
T Consensus 290 --~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 290 --FGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp --TTTTTTCTTEEEEEECSSC
T ss_pred --hhhhhCCccCCEEEeCCCc
Confidence 1246789999999886553
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.43 E-value=7.8e-07 Score=78.68 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=39.3
Q ss_pred cCCcccccCCceEEEEEEeeeeecC-CCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeeccc
Q 038350 157 VLPHFFYEQGMCIRVLNINSCGLGL-CNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVEC 223 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 223 (472)
.+|..+..+. +|++|+|+++.+.. +.+.++++|++|+|.++.++ .+...+..+|+|+.|++.+|
T Consensus 39 ~l~~~~~~l~-~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 39 KMDATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CCHHHHHHTT-TCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEE
T ss_pred hhhHHHhcCC-CCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCC
Confidence 3444455555 77777777776652 34566677777777777666 23334455667777777665
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.42 E-value=0.0001 Score=66.50 Aligned_cols=131 Identities=15% Similarity=0.213 Sum_probs=76.3
Q ss_pred ecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchh
Q 038350 274 MRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFE 353 (472)
Q Consensus 274 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 353 (472)
+.++++|+.+++....-.. .....+..+++|++|+++.+.+..+.. ..+..+.+|+.|.+..+.
T Consensus 60 ~~~l~~L~~L~L~~N~l~~------i~~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~~l~~L~~L~Ls~N~---- 123 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGA------LPVGVFDSLTQLTVLDLGTNQLTVLPS------AVFDRLVHLKELFMCCNK---- 123 (229)
T ss_dssp TTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSC----
T ss_pred hhCccCCcEEECCCCCCCC------cChhhcccCCCcCEEECCCCcCCccCh------hHhCcchhhCeEeccCCc----
Confidence 3455566666555332111 112346778899999998886653321 334567888998886532
Q ss_pred HHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhH-HHHHHHHhc
Q 038350 354 LAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEI-DLVKFLLRN 430 (472)
Q Consensus 354 ~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~-~~~~~ll~~ 430 (472)
...++.-+..+++|+.|+++.+.....+ +.. ...+.+|+.+.+.| +.+...++ .+..++..+
T Consensus 124 l~~lp~~~~~l~~L~~L~L~~N~l~~~~----------~~~-----~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~ 188 (229)
T 3e6j_A 124 LTELPRGIERLTHLTHLALDQNQLKSIP----------HGA-----FDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH 188 (229)
T ss_dssp CCSCCTTGGGCTTCSEEECCSSCCCCCC----------TTT-----TTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred ccccCcccccCCCCCEEECCCCcCCccC----------HHH-----HhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence 1133444588899999999887533222 000 11557888888876 55554433 445566665
Q ss_pred Cccce
Q 038350 431 SRSIK 435 (472)
Q Consensus 431 ~~~L~ 435 (472)
...+.
T Consensus 189 ~~~~~ 193 (229)
T 3e6j_A 189 TSIAM 193 (229)
T ss_dssp GGGEE
T ss_pred ccccc
Confidence 55554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.25 E-value=4e-05 Score=66.13 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=32.1
Q ss_pred cCCceEEEEEEeeeeecC-CCCCCcc-cccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 164 EQGMCIRVLNINSCGLGL-CNFVNFI-QLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 164 ~~~~~L~~L~L~~~~l~~-~~~~~~~-~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
.+. +|++|+++++.+.. +.+..+. +|++|+|+++.+++ + ..+..+++|+.|++.++.
T Consensus 17 ~~~-~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 17 NAV-RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp CTT-SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSC
T ss_pred CcC-CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCc
Confidence 344 67777777766552 3333333 67777776666552 1 234556666666666553
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.24 E-value=9.4e-05 Score=66.33 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=23.6
Q ss_pred cccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecc
Q 038350 304 FNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG 348 (472)
Q Consensus 304 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 348 (472)
+..+++|++|+++.+.+..+ .| ..+..+.+|+.|.+..+
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~-----~~-~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTV-----AP-GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp STTCTTCSEEECTTSCCCCB-----CT-TTTTTCTTCCEEECCSC
T ss_pred cCCCccCCEEECCCCcCCEE-----CH-HHhcCCCCCCEEEecCc
Confidence 45667777777777655432 12 34455667777777643
No 129
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.24 E-value=4e-05 Score=76.63 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=34.6
Q ss_pred CCCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc
Q 038350 4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY 39 (472)
Q Consensus 4 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr 39 (472)
..|.|+.||+||+.+||+|||.++.++++.|||+|+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~ 46 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWN 46 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999998
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.16 E-value=0.0006 Score=61.00 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=70.0
Q ss_pred ecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchh
Q 038350 274 MRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFE 353 (472)
Q Consensus 274 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 353 (472)
+..+++|+.+++....... .....+.++++|++|+++.+.+..++. ..+..+.+|+.|.+..+.-..
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~------~~~~~~~~l~~L~~L~Ls~N~l~~l~~------~~f~~l~~L~~L~L~~N~l~~- 118 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISE------LAPDAFQGLRSLNSLVLYGNKITELPK------SLFEGLFSLQLLLLNANKINC- 118 (220)
T ss_dssp STTCTTCCEEECCSSCCCE------ECTTTTTTCSSCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCC-
T ss_pred hhCCCCCCEEECCCCcCCC------cCHHHhhCCcCCCEEECCCCcCCccCH------hHccCCCCCCEEECCCCCCCE-
Confidence 3445556665554322111 112346677888888888876654321 334557788888886542111
Q ss_pred HHHHHHHHhcCCCcceEEEEeCcccCCCCCCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHHh
Q 038350 354 LAAIICLLISSPNITTLAISTGAIMHTPDFRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLLR 429 (472)
Q Consensus 354 ~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~ 429 (472)
..+..+..+++|+.|+++.+.....+ . .. ...+.+|+.+.+.+ +.+......+..++-.
T Consensus 119 --~~~~~~~~l~~L~~L~L~~N~l~~~~---~-------~~-----~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 119 --LRVDAFQDLHNLNLLSLYDNKLQTIA---K-------GT-----FSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179 (220)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCCSCCC---T-------TT-----TTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred --eCHHHcCCCCCCCEEECCCCcCCEEC---H-------HH-----HhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence 11234677888999888887533222 0 00 11456788888876 5555555555555443
No 131
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.15 E-value=4.9e-05 Score=75.49 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=38.4
Q ss_pred CCCCCCCCchH----HHHHHHhcCChhhHhhhhhhccccc----cccccccc
Q 038350 4 NTDPLSDFHDD----LIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHC 47 (472)
Q Consensus 4 ~~D~is~LPd~----iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~ 47 (472)
..|.|+.||+| |+.+||+||+.+++++++.|||+|+ |..+|+.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 46999999999 9999999999999999999999998 33456644
No 132
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.13 E-value=0.00012 Score=72.85 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=38.2
Q ss_pred CCCCCCCCchHHHHHHHhcCChhhHhhhhhhccccc----cccccccc
Q 038350 4 NTDPLSDFHDDLIIVIITFLPFIDAYRLCMSKKKWY----DRSLWLHC 47 (472)
Q Consensus 4 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vSkrWr----~~~~w~~~ 47 (472)
..|.++.||+|++.+||+||+.+|+++++.|||+|+ +..+|+..
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~ 62 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 62 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhh
Confidence 469999999999999999999999999999999998 22357643
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.12 E-value=0.00022 Score=69.14 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=58.4
Q ss_pred cccCCcccccCCceEEEEEEeeeeec---CCCCC-CcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE
Q 038350 155 QYVLPHFFYEQGMCIRVLNINSCGLG---LCNFV-NFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE 230 (472)
Q Consensus 155 ~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~ 230 (472)
...+|..+. . .+++|+|+++.+. +..+. ++++|++|+|+++.++.-. ...+.++++|+.|+|.++. +..+.
T Consensus 30 l~~iP~~~~--~-~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~ 104 (361)
T 2xot_A 30 LPNVPQSLP--S-YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLD 104 (361)
T ss_dssp CSSCCSSCC--T-TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred cCccCccCC--C-CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCC
Confidence 345666542 3 6888999988665 34455 8999999999988776211 1236678999999999875 33332
Q ss_pred E--eeCCCCeeEEEEeecc
Q 038350 231 I--TLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 231 i--~~~~~~L~~L~l~~c~ 247 (472)
- ...+++|+.|.++++.
T Consensus 105 ~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhCCCcCCCEEECCCCc
Confidence 1 2235677788777775
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.97 E-value=0.00013 Score=70.70 Aligned_cols=109 Identities=21% Similarity=0.129 Sum_probs=73.0
Q ss_pred CcccCCcccc--cCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCcee
Q 038350 154 PQYVLPHFFY--EQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFK 228 (472)
Q Consensus 154 ~~~~lp~~~~--~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~ 228 (472)
....++...+ ... +|++|+|+++.+. +..|.++++|++|+|+++.++. -....+.++++|+.|+|.++. +..
T Consensus 50 ~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~-i~~ 126 (361)
T 2xot_A 50 NLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNH-IVV 126 (361)
T ss_dssp CCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCE
T ss_pred CCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCc-ccE
Confidence 3344555555 455 9999999998765 4568999999999999987762 112246789999999999875 333
Q ss_pred EE--EeeCCCCeeEEEEeeccCCceeEE-------EeCCCeeEEEEee
Q 038350 229 VE--ITLRTLGLRKLIVRHCQSLSLGIE-------LWLPRLQYFEYAG 267 (472)
Q Consensus 229 l~--i~~~~~~L~~L~l~~c~~~~~~~~-------i~~p~L~~L~l~~ 267 (472)
+. ....+++|+.|.++++.. ..+. ...++|+.|++++
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 127 VDRNAFEDMAQLQKLYLSQNQI--SRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC--CSCCGGGTC----CTTCCEEECCS
T ss_pred ECHHHhCCcccCCEEECCCCcC--CeeCHHHhcCcccCCcCCEEECCC
Confidence 21 123356899998888863 1111 2356666666655
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.94 E-value=8.6e-05 Score=76.57 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=57.1
Q ss_pred ccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE---E
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV---E 230 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l---~ 230 (472)
..+|. +..+. +|++|+|+++.+. |..+.++++|++|+|+++.++. +. -+.++++|+.|+|.++. +..+ .
T Consensus 454 ~~lp~-~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~ 527 (567)
T 1dce_A 454 TVLCH-LEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQ 527 (567)
T ss_dssp SSCCC-GGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTG
T ss_pred CCCcC-ccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcH
Confidence 34665 55556 8888888888765 4456788888888888887763 33 46778888888888764 2222 1
Q ss_pred EeeCCCCeeEEEEeecc
Q 038350 231 ITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 231 i~~~~~~L~~L~l~~c~ 247 (472)
.-..+++|+.|.++++.
T Consensus 528 ~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GGGGCTTCCEEECTTSG
T ss_pred HHhcCCCCCEEEecCCc
Confidence 12234577777776665
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.84 E-value=0.00033 Score=61.37 Aligned_cols=97 Identities=18% Similarity=0.053 Sum_probs=44.7
Q ss_pred eEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEE
Q 038350 168 CIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIV 243 (472)
Q Consensus 168 ~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l 243 (472)
+|++|+|+++.+. |..+.++++|++|+|+++.++.- ....+.+++.|+.|+|.++. +..+.- ...+++|+.|.+
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 4555555555443 23345555555555555554410 01123445555555555543 222111 112345555655
Q ss_pred eeccCCceeEE----EeCCCeeEEEEeee
Q 038350 244 RHCQSLSLGIE----LWLPRLQYFEYAGK 268 (472)
Q Consensus 244 ~~c~~~~~~~~----i~~p~L~~L~l~~~ 268 (472)
.++.. ..+. -..++|+.|.+.+.
T Consensus 110 ~~N~l--~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 110 HGNDI--SVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCC--CBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCC--CeeChhhhhcCccccEEEeCCC
Confidence 55542 1111 12456777776653
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.82 E-value=0.00015 Score=74.80 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=14.8
Q ss_pred hhcccCCCCcEEEEecccccc
Q 038350 302 SLFNPFSDARILQVSTSALKI 322 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~ 322 (472)
..+..+++|+.|+++++.+..
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGG
T ss_pred HHHhcCCCCCEEEecCCcCCC
Confidence 446677888888887776553
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.81 E-value=0.0005 Score=67.60 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=7.7
Q ss_pred cccCCCCcEEEEecc
Q 038350 304 FNPFSDARILQVSTS 318 (472)
Q Consensus 304 l~~l~~L~~L~l~~~ 318 (472)
+.+|++|+.+.+..+
T Consensus 267 F~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 267 FYYCPELAEVTTYGS 281 (401)
T ss_dssp TTTCTTCCEEEEESS
T ss_pred hhCCCCCCEEEeCCc
Confidence 445555555555443
No 139
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.72 E-value=0.0015 Score=58.28 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=49.1
Q ss_pred hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCC
Q 038350 303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPD 382 (472)
Q Consensus 303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~ 382 (472)
.+..+++|++|+++.+.+..+. + ..+..+.+|+.|.+..+.-.. ..+..+..+++|+.|+++.+......
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~-----~-~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~- 145 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQ-----H-KMFKGLESLKTLMLRSNRITC---VGNDSFIGLSSVRLLSLYDNQITTVA- 145 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC-----G-GGGTTCSSCCEEECTTSCCCC---BCTTSSTTCTTCSEEECTTSCCCCBC-
T ss_pred HhCCCCCCCEEECCCCccCccC-----H-hHhcCCcCCCEEECCCCcCCe---ECHhHcCCCccCCEEECCCCcCCEEC-
Confidence 3456666777777666544321 1 223445666666665331110 01223456677777777665322111
Q ss_pred CCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHH
Q 038350 383 FRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFL 427 (472)
Q Consensus 383 ~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~l 427 (472)
+..+ ..+.+|+.+.+.+ +.+......+..++
T Consensus 146 ---------~~~~-----~~l~~L~~L~L~~N~l~c~c~l~~l~~~~ 178 (220)
T 2v70_A 146 ---------PGAF-----DTLHSLSTLNLLANPFNCNCYLAWLGEWL 178 (220)
T ss_dssp ---------TTTT-----TTCTTCCEEECCSCCEECSGGGHHHHHHH
T ss_pred ---------HHHh-----cCCCCCCEEEecCcCCcCCCchHHHHHHH
Confidence 0001 1445677777655 55554444444444
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.70 E-value=0.00014 Score=63.66 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=44.8
Q ss_pred ccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEeeccCCceeEE----EeCCCee
Q 038350 188 IQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQ 261 (472)
Q Consensus 188 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~ 261 (472)
++|++|+|.++.++ .+...+.++++|+.|++.++. +..+.- ...+++|+.|.++++.. ..+. ...++|+
T Consensus 31 ~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l--~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRL--RCIPPRTFDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--CBCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCcc--CEeCHHHhCCCCCCC
Confidence 45666666666554 222335556666666666553 222211 12234666666666542 1111 1235666
Q ss_pred EEEEeeeec-e---EeecCCCceeEEEEE
Q 038350 262 YFEYAGKMV-P---FDMRGMDDLEVVVLD 286 (472)
Q Consensus 262 ~L~l~~~~~-~---~~~~~~~~L~~l~l~ 286 (472)
+|.+++... . -.+..+++|+.+++.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 666655321 1 123445556665554
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.70 E-value=0.00028 Score=68.63 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=46.8
Q ss_pred ccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccC-chhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 305 NPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLE-RFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 305 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
...++|++|+++.+.+..... ...+ ..+....+|++|+|..+.- ......+...+..+++|+.|+++.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~-~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGV-AVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHH-HHHH-HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred hcCCccceeeCCCCCCChHHH-HHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 356789999998876543211 1111 2234577899999976532 23345667788899999999998874
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.68 E-value=0.0002 Score=62.64 Aligned_cols=89 Identities=22% Similarity=0.146 Sum_probs=59.7
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec--CC--CCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG--LC--NFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV 229 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l 229 (472)
....+|..++ . +|++|.|+++.+. ++ .+..+++|++|+|+++.++.- ....+.+++.|+.|+|.++. +..+
T Consensus 19 ~l~~ip~~~~--~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~ 93 (192)
T 1w8a_A 19 GLKEIPRDIP--L-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEI 93 (192)
T ss_dssp CCSSCCSCCC--T-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEE
T ss_pred CcCcCccCCC--C-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc-CCcc
Confidence 3456676553 3 7899999998775 22 268899999999999887621 12336678999999999875 3332
Q ss_pred EE--eeCCCCeeEEEEeecc
Q 038350 230 EI--TLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 230 ~i--~~~~~~L~~L~l~~c~ 247 (472)
.. ...+++|+.|.++++.
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 94 SNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp CSSSSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCc
Confidence 21 1234577777777665
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.68 E-value=0.00054 Score=65.37 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=101.2
Q ss_pred CCceEEEEEEeee--eecCCCCCCcccccEEEeeeEEe---ChHHHHHHHhcCCCcceEeecc-----------------
Q 038350 165 QGMCIRVLNINSC--GLGLCNFVNFIQLTSLALTRVRL---SWAAMENIAHNCPFLETLSLVE----------------- 222 (472)
Q Consensus 165 ~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~----------------- 222 (472)
|. +|++|.|... .+.+..|.+|++|++|++.++.+ .+.. +.+|..+..+.+..
T Consensus 100 ~~-~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 KQ-TLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp CT-TCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cC-CCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccccccccc
Confidence 56 8888888762 23356688889999998876643 2322 34566666665433
Q ss_pred cCCce-eEEEee-------------CCCCeeEEEEeeccC--CceeEEEeCCCeeEEEEeee-ec---eEeecCCCceeE
Q 038350 223 CYRIF-KVEITL-------------RTLGLRKLIVRHCQS--LSLGIELWLPRLQYFEYAGK-MV---PFDMRGMDDLEV 282 (472)
Q Consensus 223 c~~~~-~l~i~~-------------~~~~L~~L~l~~c~~--~~~~~~i~~p~L~~L~l~~~-~~---~~~~~~~~~L~~ 282 (472)
|..+. .+.+.. ...++..+.+.+.-. ....+.-.+++|+++++.+. .. ...+.++.+|++
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 22111 011100 011233333332110 00000012688999998763 22 235678899999
Q ss_pred EEEEEeecccccCchhhHHhhcccCCCCc-EEEEecccccccccccccccCCCcccCCceeEEEecc-cCchhHHHHHHH
Q 038350 283 VVLDYRLDTRYSYNGDDIESLFNPFSDAR-ILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTG-LERFELAAIICL 360 (472)
Q Consensus 283 l~l~~~~~~~~~~~~~~~~~ll~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~l~~l 360 (472)
+.+...... .-...+.+|++|+ .+.+... +..+.. ..+..+.+|+.+.+..+ ..... ...
T Consensus 255 l~l~~ni~~-------I~~~aF~~~~~L~~~l~l~~~-l~~I~~------~aF~~c~~L~~l~l~~n~i~~I~----~~a 316 (329)
T 3sb4_A 255 IKLPHNLKT-------IGQRVFSNCGRLAGTLELPAS-VTAIEF------GAFMGCDNLRYVLATGDKITTLG----DEL 316 (329)
T ss_dssp EECCTTCCE-------ECTTTTTTCTTCCEEEEECTT-CCEECT------TTTTTCTTEEEEEECSSCCCEEC----TTT
T ss_pred EECCcccce-------ehHHHhhCChhccEEEEEccc-ceEEch------hhhhCCccCCEEEeCCCccCccc----hhh
Confidence 877532111 1224578899999 9999763 332221 44567788999988432 11110 124
Q ss_pred HhcCCCcceEE
Q 038350 361 LISSPNITTLA 371 (472)
Q Consensus 361 l~~~p~L~~L~ 371 (472)
+.+|++|++++
T Consensus 317 F~~~~~L~~ly 327 (329)
T 3sb4_A 317 FGNGVPSKLIY 327 (329)
T ss_dssp TCTTCCCCEEE
T ss_pred hcCCcchhhhc
Confidence 78899999986
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.49 E-value=0.00066 Score=58.30 Aligned_cols=106 Identities=19% Similarity=0.109 Sum_probs=65.1
Q ss_pred ccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE-
Q 038350 156 YVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI- 231 (472)
Q Consensus 156 ~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i- 231 (472)
..+|..++ . +|++|+++++.+. +..+.++++|++|+|.++.++. .....+..++.|+.|++.++. +..+.-
T Consensus 20 ~~~p~~~~--~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 94 (177)
T 2o6r_A 20 TSVPTGIP--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENK-LQSLPNG 94 (177)
T ss_dssp SSCCTTCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCCCCC--C-CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCC-ccccCHH
Confidence 34554432 3 7888888877665 2335778888888888777661 111235677888888888764 222211
Q ss_pred -eeCCCCeeEEEEeeccCCceeEE----EeCCCeeEEEEeee
Q 038350 232 -TLRTLGLRKLIVRHCQSLSLGIE----LWLPRLQYFEYAGK 268 (472)
Q Consensus 232 -~~~~~~L~~L~l~~c~~~~~~~~----i~~p~L~~L~l~~~ 268 (472)
...+++|+.|.++++.. ..+. -..++|++|.+.+.
T Consensus 95 ~~~~l~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTTCTTCCEEECCSSCC--SCCCTTTTTTCTTCCEEECCSS
T ss_pred HhhCCcccCEEECcCCcc--eEeCHHHhcCCcccCEEEecCC
Confidence 12356888888887753 1211 23578888888764
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.42 E-value=0.0002 Score=76.09 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=59.2
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEEE
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVEI 231 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i 231 (472)
....+|..++.+. +|++|+|+++.+. |..+.++++|++|+|+++.++ .+..-+.++++|+.|+|.++. ++.+.-
T Consensus 235 ~l~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~lp~ 310 (727)
T 4b8c_D 235 QIFNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNM-VTTLPW 310 (727)
T ss_dssp CCSCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSC-CCCCCS
T ss_pred CCCCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCC-CCccCh
Confidence 3446777777776 7888888877665 344677788888888877776 333335677888888887763 332211
Q ss_pred -eeCCCCeeEEEEeeccC
Q 038350 232 -TLRTLGLRKLIVRHCQS 248 (472)
Q Consensus 232 -~~~~~~L~~L~l~~c~~ 248 (472)
...+++|+.|.++++.+
T Consensus 311 ~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp STTSCTTCCCEECTTSCC
T ss_pred hhhcCCCccEEeCCCCcc
Confidence 22356777777777654
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.36 E-value=0.00067 Score=59.24 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=47.5
Q ss_pred cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 162 FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
+.... +|++|+|+++.+. |..+.++++|++|+|+++.++.-. ...+.+.+.|+.|++.++.
T Consensus 50 ~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 50 FGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp GGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCEEECCSSC
T ss_pred cccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCc
Confidence 33455 9999999999775 566899999999999999877211 1235678999999999875
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.24 E-value=0.00093 Score=57.35 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=47.3
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
....+|..+. . +|++|+|+++.+. +..+.++++|++|+|+++.++. -...++.++++|+.|+|.++.
T Consensus 23 ~l~~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 23 RLASVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp CCSSCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCc
Confidence 3445666553 4 8899999988765 4457889999999998887762 111235678888888888764
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.22 E-value=0.00094 Score=57.04 Aligned_cols=67 Identities=21% Similarity=0.141 Sum_probs=48.0
Q ss_pred CcccCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
....+|..+. . +|++|+|+++.+. +..+.++++|++|+|+++.++. -....+.++++|+.|+|.++.
T Consensus 20 ~l~~ip~~~~--~-~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 20 SLASVPTGIP--T-TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp CCSSCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CcCccCccCC--C-CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCc
Confidence 3445666553 4 8899999988765 4557889999999999887761 111235678899999998764
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.21 E-value=0.0002 Score=76.12 Aligned_cols=105 Identities=16% Similarity=0.069 Sum_probs=64.0
Q ss_pred CcccccCCceEEEEEEeeeeec--CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeEE-EeeCC
Q 038350 159 PHFFYEQGMCIRVLNINSCGLG--LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKVE-ITLRT 235 (472)
Q Consensus 159 p~~~~~~~~~L~~L~L~~~~l~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~-i~~~~ 235 (472)
|..+.... .|+.|+|+++.+. +..+.++++|++|+|+++.++ .+..-+..+++|+.|+|.++. +..+. ....+
T Consensus 217 ~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp -----CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred hhhhccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 34444445 8888888888665 344567888888888888776 333346778888888888775 23221 11235
Q ss_pred CCeeEEEEeeccC-CceeEEEeCCCeeEEEEee
Q 038350 236 LGLRKLIVRHCQS-LSLGIELWLPRLQYFEYAG 267 (472)
Q Consensus 236 ~~L~~L~l~~c~~-~~~~~~i~~p~L~~L~l~~ 267 (472)
++|+.|.+++|.. .+..---..++|+.|.+++
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 6888888887753 1111112356777777755
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.99 E-value=0.0042 Score=53.74 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=37.9
Q ss_pred hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEE--ecc-cCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTL--NTG-LERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l--~~~-~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
..+...++|++|+|+.+.+..... .... ..+....+|++|++ ..+ +.......+...++.+++|++|+++.+
T Consensus 87 ~~L~~n~~L~~L~L~~N~i~~~g~-~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESNFISGSGI-LALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHCSSCCEEECCSSCCCHHHH-HHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCcCEEECcCCcCCHHHH-HHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 344455566666666554332100 0011 22334556666666 322 122334467777788888888888665
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=95.95 E-value=0.0025 Score=55.69 Aligned_cols=100 Identities=11% Similarity=-0.002 Sum_probs=70.8
Q ss_pred HCCCcEEEEEeeCCCCCCCCCCCCCCcccCCcccccCCceEEEEEEeeeeecC--CCCCCcccccEEEeeeEEeChHHHH
Q 038350 129 EKSVQELSLDFSDGDPVVPQPTLRNPQYVLPHFFYEQGMCIRVLNINSCGLGL--CNFVNFIQLTSLALTRVRLSWAAME 206 (472)
Q Consensus 129 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~L~~L~L~~~~~~~~~l~ 206 (472)
-+.++.|.+... ....+| .+..+. +|++|+|++|.+.. ..+..+++|++|+|+++.+++ +.
T Consensus 47 l~~L~~L~ls~n-------------~l~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~ 109 (198)
T 1ds9_A 47 LKACKHLALSTN-------------NIEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS 109 (198)
T ss_dssp TTTCSEEECSEE-------------EESCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH
T ss_pred CCCCCEEECCCC-------------CCcccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC
Confidence 478888887532 222356 555666 99999999998873 224567899999999998883 43
Q ss_pred HHHhcCCCcceEeecccCCceeE---EEeeCCCCeeEEEEeecc
Q 038350 207 NIAHNCPFLETLSLVECYRIFKV---EITLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 207 ~l~~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~ 247 (472)
. +..+++|+.|++.++.- ..+ ..-..+++|+.|.+.++.
T Consensus 110 ~-~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 G-IEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp H-HHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred c-cccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCc
Confidence 3 67789999999998742 221 122346799999998886
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.92 E-value=0.0059 Score=52.83 Aligned_cols=132 Identities=9% Similarity=0.103 Sum_probs=81.8
Q ss_pred hhHHhhcccCCCCcEEEEecc-cccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 298 DDIESLFNPFSDARILQVSTS-ALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 298 ~~~~~ll~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
..+...+...++|++|+++.+ .+..... .... ..+....+|++|+|..+. .......+...++..++|++|+|+.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~-~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTL-KACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHH-HHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHH-HHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 356788888999999999876 5432110 0111 233456789999998653 22335567778889999999999887
Q ss_pred cccCCCCCCCCCCCCCccccccccc-ccccCccEEEE--Eeee-cChhhHHHHHHHHhcCccceEEEEeeccc
Q 038350 376 AIMHTPDFRPNYFPLSRGEIWTTNG-SILDHLECVQF--EGFT-GKICEIDLVKFLLRNSRSIKELNIKQLIR 444 (472)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~L~~v~i--~~f~-g~~~e~~~~~~ll~~~~~L~~l~i~~~~~ 444 (472)
..... +....... ...++|+++.+ .+-. |.++...+.+ .++..+.|+++.+.....
T Consensus 104 ~i~~~------------g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 FISGS------------GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHH------------HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred cCCHH------------HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 42100 00000111 14568999999 4332 3344344544 556778999999976654
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.88 E-value=0.012 Score=50.11 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=61.7
Q ss_pred hcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCcccCCCC
Q 038350 303 LFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGAIMHTPD 382 (472)
Q Consensus 303 ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~ 382 (472)
.+..+++|++|+++.+.+..+. + ..+..+.+|+.|.+..+.-.. .....+..+++|+.|+++.+.....+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~-----~-~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~- 116 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQNQIQSLP-----D-GVFDKLTKLTILYLHENKLQS---LPNGVFDKLTQLKELALDTNQLKSVP- 116 (177)
T ss_dssp TTTTCTTCSEEECCSSCCCCCC-----T-TTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred HhcCcccccEEECCCCcceEeC-----h-hHccCCCccCEEECCCCCccc---cCHHHhhCCcccCEEECcCCcceEeC-
Confidence 4566788888888777554322 1 234567778888876432111 11224567888888888877432222
Q ss_pred CCCCCCCCCcccccccccccccCccEEEEEe--eecChhhHHHHHHHHhcCcc
Q 038350 383 FRPNYFPLSRGEIWTTNGSILDHLECVQFEG--FTGKICEIDLVKFLLRNSRS 433 (472)
Q Consensus 383 ~~~~~~~~~~~~~w~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~~~~~ 433 (472)
. .. ...+.+|+.+.+.+ +.+....+..+...+.+...
T Consensus 117 --~--------~~----~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~ 155 (177)
T 2o6r_A 117 --D--------GI----FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 155 (177)
T ss_dssp --T--------TT----TTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGG
T ss_pred --H--------HH----hcCCcccCEEEecCCCeeccCccHHHHHHHHhhCcc
Confidence 0 00 01456788888866 55665556666555555443
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.68 E-value=0.0057 Score=59.97 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=38.8
Q ss_pred ccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeE--EeChHHHHHHHhcCCCcceEeecc
Q 038350 161 FFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRV--RLSWAAMENIAHNCPFLETLSLVE 222 (472)
Q Consensus 161 ~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~~ 222 (472)
.+..|. +|+.+.|.++.+. ...|. +.+|+.+.|... .+.+. .+.+|++|+.+.+..
T Consensus 175 aF~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCY-NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCT
T ss_pred HhhCcc-cCCeeecCCCcceEechhhEe-ecccCEEEeCCchheehhh----HhhCCCCCCEEecCC
Confidence 344567 9999999876444 34455 689999998642 33322 367899999999865
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.45 E-value=0.0044 Score=52.74 Aligned_cols=68 Identities=21% Similarity=0.112 Sum_probs=48.4
Q ss_pred cccCCcc-cccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccC
Q 038350 155 QYVLPHF-FYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 155 ~~~lp~~-~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 224 (472)
...++.. +.... +|++|+|+++.+. +..|.++++|++|+|+++.++. -....+..+++|+.|+|.+..
T Consensus 42 i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 42 ITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCC
Confidence 3445443 33455 9999999999775 3346899999999999998872 111236678899999988753
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.39 E-value=0.005 Score=52.65 Aligned_cols=80 Identities=25% Similarity=0.128 Sum_probs=55.3
Q ss_pred CCCcEEEEEeeCCCCCCCCCCCCCCcccCCc-ccccCCceEEEEEEeeeeec--C-CCCCCcccccEEEeeeEEeChHHH
Q 038350 130 KSVQELSLDFSDGDPVVPQPTLRNPQYVLPH-FFYEQGMCIRVLNINSCGLG--L-CNFVNFIQLTSLALTRVRLSWAAM 205 (472)
Q Consensus 130 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~~L~~L~L~~~~l~--~-~~~~~~~~L~~L~L~~~~~~~~~l 205 (472)
.+++.|.+.. +....++. .+.... +|++|+|+++.+. + ..|.++++|++|+|+++.+.. -.
T Consensus 33 ~~L~~L~Ls~-------------N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~ 97 (174)
T 2r9u_A 33 TDKQRLWLNN-------------NQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IP 97 (174)
T ss_dssp TTCSEEECCS-------------SCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC
T ss_pred CCCcEEEeCC-------------CCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eC
Confidence 5677777642 23334433 344455 9999999999776 3 336899999999999998771 11
Q ss_pred HHHHhcCCCcceEeecccC
Q 038350 206 ENIAHNCPFLETLSLVECY 224 (472)
Q Consensus 206 ~~l~~~cp~Le~L~l~~c~ 224 (472)
...+..+++|+.|+|.++.
T Consensus 98 ~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTTTCTTCSEEECCSSC
T ss_pred HHHhccccCCCEEEeCCCC
Confidence 1236678899999998764
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.21 E-value=0.0041 Score=59.56 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=61.3
Q ss_pred CcccCCcccccCCceEEEEEEee-eeec---CCCCCCcccccEEEeeeEEeChHHHHHHHhcCCCcceEeecccCCceeE
Q 038350 154 PQYVLPHFFYEQGMCIRVLNINS-CGLG---LCNFVNFIQLTSLALTRVRLSWAAMENIAHNCPFLETLSLVECYRIFKV 229 (472)
Q Consensus 154 ~~~~lp~~~~~~~~~L~~L~L~~-~~l~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l 229 (472)
....+|. +.... +|++|+|++ +.+. +..|.++++|+.|+|+++.++. -....+.++++|+.|+|.++. +..+
T Consensus 20 ~l~~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA-LESL 95 (347)
T ss_dssp CCTTTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC-CSCC
T ss_pred CCCccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCc-ccee
Confidence 3445777 65566 899999986 7665 3558899999999999988762 112346789999999999864 3332
Q ss_pred EE-eeCCCCeeEEEEeecc
Q 038350 230 EI-TLRTLGLRKLIVRHCQ 247 (472)
Q Consensus 230 ~i-~~~~~~L~~L~l~~c~ 247 (472)
.- .....+|+.|.+.++.
T Consensus 96 ~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSTTTCSCCCCEEECCSSC
T ss_pred CHHHcccCCceEEEeeCCC
Confidence 21 0111248888887654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.15 E-value=0.014 Score=56.96 Aligned_cols=63 Identities=8% Similarity=0.126 Sum_probs=39.1
Q ss_pred hhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 302 SLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 302 ~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
..+.++.+|+.++|.... +.+.. ..+..+.+|+.+.+........ ..-+.+|++|++++|...
T Consensus 314 ~aF~~c~~L~~i~lp~~v-~~I~~------~aF~~c~~L~~i~lp~~l~~I~----~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYLV-EEIGK------RSFRGCTSLSNINFPLSLRKIG----ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTTC-CEECT------TTTTTCTTCCEECCCTTCCEEC----TTTBTTCTTCCEEEEEGG
T ss_pred hhhcCCCCCCEEEeCCcc-cEEhH------HhccCCCCCCEEEECccccEeh----HHHhhCCCCCCEEEECCC
Confidence 346788999999986442 22211 3345677888887753322110 123688999999998654
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=91.29 E-value=0.19 Score=47.74 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=34.0
Q ss_pred cccCCCCcEEEEec-ccccccccccccccCCCcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeCc
Q 038350 304 FNPFSDARILQVST-SALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTGA 376 (472)
Q Consensus 304 l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 376 (472)
+..+++|+.|+|++ +.+..+. + ..+..+.+|+.|.|+.+.-.. ..+..+..+++|+.|+|+.+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~-----~-~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLE-----L-RDLRGLGELRNLTIVKSGLRF---VAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEEC-----G-GGSCSCCCCSEEECCSSCCCE---ECTTGGGSCSCCCEEECCSSC
T ss_pred CCCCCCeeEEEccCCCCCCCcC-----h-hHhccccCCCEEECCCCccce---eCHHHhcCCcCCCEEeCCCCc
Confidence 55566677777764 5544322 1 234456666777665431111 112245667777777776664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=88.59 E-value=0.2 Score=45.75 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=42.8
Q ss_pred HHhhcccCCCCcEEEEecccccccccccccccCCCcccCCceeEEEecccCch----hHHHHHHHHhcCCCcceEE
Q 038350 300 IESLFNPFSDARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLERF----ELAAIICLLISSPNITTLA 371 (472)
Q Consensus 300 ~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~~l~~ll~~~p~L~~L~ 371 (472)
+..++..+++|+.|+|+++.+..+.. . ..+..+ +|+.|.+..+--.. .......++..+|+|+.|+
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~~~---l--~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSERE---L--DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSGGG---G--GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred chhHHhhCCCCCEEECCCCccCCchh---h--hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 33556789999999999887664421 1 122223 88999887542111 1234556889999999984
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=87.82 E-value=0.14 Score=46.84 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=37.0
Q ss_pred CCcccccCCceEEEEEEeeeeecC-CCCCCcc--cccEEEeeeEEeCh------HHHHHHHhcCCCcceEeec
Q 038350 158 LPHFFYEQGMCIRVLNINSCGLGL-CNFVNFI--QLTSLALTRVRLSW------AAMENIAHNCPFLETLSLV 221 (472)
Q Consensus 158 lp~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~--~L~~L~L~~~~~~~------~~l~~l~~~cp~Le~L~l~ 221 (472)
+|..+..++ +|++|+|+++.+.. ..+..+. +|++|+|.++.+.. .-...++..+|.|+.|+=.
T Consensus 188 l~~~~~~l~-~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 188 MSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GTTHHHHST-TCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred chhHHhhCC-CCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 344444555 77788777776653 2233333 77777777765542 2234566677777776543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.26 E-value=0.58 Score=45.29 Aligned_cols=99 Identities=12% Similarity=0.232 Sum_probs=54.4
Q ss_pred CCCeeEEEEeeeec---eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecccccccccccccccCC
Q 038350 257 LPRLQYFEYAGKMV---PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSALKIFPTECLLCGRQ 333 (472)
Q Consensus 257 ~p~L~~L~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 333 (472)
+++|+.+.+..... ...+.+|.+|+++.+.-.... .-...+.+|.+|+.+.|.... ..+.. ..
T Consensus 287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~-------I~~~aF~~C~~L~~i~ip~sv-~~I~~------~a 352 (394)
T 4gt6_A 287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQ-------ILDDAFAGCEQLERIAIPSSV-TKIPE------SA 352 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-------ECTTTTTTCTTCCEEEECTTC-CBCCG------GG
T ss_pred ccccccccCCCcccccCceeecCCCCcCEEEeCCcccE-------ehHhHhhCCCCCCEEEECccc-CEEhH------hH
Confidence 56777777754322 234667888998876421100 112457789999999996542 22211 33
Q ss_pred CcccCCceeEEEecccCchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 334 LFQFWQLEHLTLNTGLERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 334 l~~~~~L~~L~l~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
+..|.+|+.+.+... .... .-+..|.+|+.+.+...
T Consensus 353 F~~C~~L~~i~~~~~-----~~~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 353 FSNCTALNNIEYSGS-----RSQW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp GTTCTTCCEEEESSC-----HHHH-HTCBCCCCC--------
T ss_pred hhCCCCCCEEEECCc-----eeeh-hhhhccCCCCEEEeCCC
Confidence 556788999888532 1122 34567999999987654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.23 E-value=0.8 Score=43.90 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=31.4
Q ss_pred cCCcccccCCceEEEEEEeee--eecCCCCCCcccccEEEee-eE-EeChHHHHHHHhcCCCcceEeeccc
Q 038350 157 VLPHFFYEQGMCIRVLNINSC--GLGLCNFVNFIQLTSLALT-RV-RLSWAAMENIAHNCPFLETLSLVEC 223 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~-~~-~~~~~~l~~l~~~cp~Le~L~l~~c 223 (472)
.++...|.+. +|+.+.+... .+....|.++ +|+...+. .+ .+... .+..|+.|+...+...
T Consensus 104 ~I~~~aF~~~-~L~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~v~~i~~~----~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 104 KFGDYVFQGT-DLDDFEFPGATTEIGNYIFYNS-SVKRIVIPKSVTTIKDG----IGYKAENLEKIEVSSN 168 (379)
T ss_dssp EECTTTTTTC-CCSEEECCTTCCEECTTTTTTC-CCCEEEECTTCCEECSC----TTTTCTTCCEEEECTT
T ss_pred EeccceeccC-CcccccCCCccccccccccccc-eeeeeeccceeeccccc----hhcccccccccccccc
Confidence 4455555665 7877777543 2223344444 45555442 22 22211 2456777777776643
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=77.85 E-value=1.9 Score=41.52 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=29.8
Q ss_pred CCCeeEEEEeeeec---eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEecc
Q 038350 257 LPRLQYFEYAGKMV---PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTS 318 (472)
Q Consensus 257 ~p~L~~L~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~ 318 (472)
+.+|+++.+..... ...+.+|.+|+++.+...... .-...+.+|++|+.+++...
T Consensus 319 c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~-------I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 319 CTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLRK-------IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTCCE-------ECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccccE-------ehHHHhhCCCCCCEEEECCC
Confidence 34555555433221 224556777777755311000 11245778999999999654
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=74.17 E-value=3.3 Score=35.69 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=82.1
Q ss_pred hhHHhhcccCCCCcEEEEecc-cccccccccccccCCCcccCCceeEEEeccc-CchhHHHHHHHHhcCCCcceEEEEeC
Q 038350 298 DDIESLFNPFSDARILQVSTS-ALKIFPTECLLCGRQLFQFWQLEHLTLNTGL-ERFELAAIICLLISSPNITTLAISTG 375 (472)
Q Consensus 298 ~~~~~ll~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~ll~~~p~L~~L~i~~~ 375 (472)
..+..++..-+.|+.|.|+.. .+..--. .... ..+.....|+.|.|..+. .......+...|+.-+.|++|+|+.+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga-~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERI-RSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHH-HHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHH-HHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 357778888889999999763 3321100 0011 234556789999998653 22345688888999999999999888
Q ss_pred cccCCCCCCCCCCCCCccccccccc-ccccCccEEEEEe----eecChhhHHHHHHHHhcCccceEEEEeecc
Q 038350 376 AIMHTPDFRPNYFPLSRGEIWTTNG-SILDHLECVQFEG----FTGKICEIDLVKFLLRNSRSIKELNIKQLI 443 (472)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~L~~v~i~~----f~g~~~e~~~~~~ll~~~~~L~~l~i~~~~ 443 (472)
..... +..-.... ..-+.|+++.+.+ .-|...+.++++.+- .-+.|.++.+.+..
T Consensus 109 ~Ig~~------------Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 FLTPE------------LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFAS 168 (197)
T ss_dssp BCCHH------------HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCC
T ss_pred cCCHH------------HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCC
Confidence 42100 00000011 1345699999964 346677777888664 45678988886543
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=72.34 E-value=0.82 Score=39.51 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=38.9
Q ss_pred eEEEEEEeeeeecCCC-------CCCcccccEEEeeeEEeChHHHHHHHhc---CCCcceEeeccc
Q 038350 168 CIRVLNINSCGLGLCN-------FVNFIQLTSLALTRVRLSWAAMENIAHN---CPFLETLSLVEC 223 (472)
Q Consensus 168 ~L~~L~L~~~~l~~~~-------~~~~~~L~~L~L~~~~~~~~~l~~l~~~---cp~Le~L~l~~c 223 (472)
+|++|+|++|.+.+.+ +..-..|++|+|+++.|.+++...+... -..|++|+|.++
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 7888888888776422 1344678888888888887766665543 455778877654
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=69.92 E-value=1.5 Score=42.35 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=54.6
Q ss_pred CCCCCCcccccEEEeeeE--EeChHHHHHHHhcCCCcceEeecccCCceeEEE--eeCCCCeeEEEEeeccCCceeEE--
Q 038350 181 LCNFVNFIQLTSLALTRV--RLSWAAMENIAHNCPFLETLSLVECYRIFKVEI--TLRTLGLRKLIVRHCQSLSLGIE-- 254 (472)
Q Consensus 181 ~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~~~~~~~-- 254 (472)
...|.+|..|+++.+... .+... .+.+|+.|+.+.+.. .+..+.- ...+.+|+.+.+..- +..+.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~---v~~I~~~ 328 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG---ITQILDD 328 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT---CCEECTT
T ss_pred cceeeecccccEEecccccceecCc----ccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc---ccEehHh
Confidence 344566677777666432 22221 244567777666642 1111110 112335555544221 11110
Q ss_pred --EeCCCeeEEEEeeeec---eEeecCCCceeEEEEEEeecccccCchhhHHhhcccCCCCcEEEEeccc
Q 038350 255 --LWLPRLQYFEYAGKMV---PFDMRGMDDLEVVVLDYRLDTRYSYNGDDIESLFNPFSDARILQVSTSA 319 (472)
Q Consensus 255 --i~~p~L~~L~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ll~~l~~L~~L~l~~~~ 319 (472)
-.+.+|+++.+..... ...+.+|.+|+++.+.-.. ....-+..+.+|+.+.+....
T Consensus 329 aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~---------~~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR---------SQWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH---------HHHHTCBCCCCC---------
T ss_pred HhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce---------eehhhhhccCCCCEEEeCCCC
Confidence 1355677777744322 3356788999988765211 122345677889988886554
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=56.54 E-value=4 Score=32.38 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=31.2
Q ss_pred cCCcccccCCceEEEEEEeeeeec---CCCCCCcccccEEEeeeEEeC
Q 038350 157 VLPHFFYEQGMCIRVLNINSCGLG---LCNFVNFIQLTSLALTRVRLS 201 (472)
Q Consensus 157 ~lp~~~~~~~~~L~~L~L~~~~l~---~~~~~~~~~L~~L~L~~~~~~ 201 (472)
.+|..+ +.+|++|+|+++.+. +..|..+++|++|+|.++-+.
T Consensus 24 ~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 566543 227899999998775 344688999999999888665
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=52.83 E-value=11 Score=35.60 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=29.3
Q ss_pred cccCCceEEEEEEeee--eecCCCCCCcccccEEEeeeE--EeChHHHHHHHhcCCCcceEeecc
Q 038350 162 FYEQGMCIRVLNINSC--GLGLCNFVNFIQLTSLALTRV--RLSWAAMENIAHNCPFLETLSLVE 222 (472)
Q Consensus 162 ~~~~~~~L~~L~L~~~--~l~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~cp~Le~L~l~~ 222 (472)
++.|. .|+.+.+... .+....|.++.+|+.+.+... .+.. ..+.+|++|+.+.+..
T Consensus 236 f~~~~-~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~----~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 236 FYGMK-ALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPY----LLCSGCSNLTKVVMDN 295 (379)
T ss_dssp TTTCS-SCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECT----TTTTTCTTCCEEEECC
T ss_pred ccCCc-cceEEEcCCCccEeCccccceeehhccccccccceeccc----cccccccccccccccc
Confidence 33455 6666666432 233445566666766666422 2221 1245667777666643
No 170
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=45.16 E-value=18 Score=27.16 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=30.8
Q ss_pred cceEEEEeeccccCc--chhhHHHHHHHHhhhccCCeEEee
Q 038350 433 SIKELNIKQLIRATS--SVTSEAFKEINQAVAASGGVVINW 471 (472)
Q Consensus 433 ~L~~l~i~~~~~~~~--~~~~~~~~~l~~~~~as~~~~i~~ 471 (472)
.|++++|.+++.... ..+..+...+..+.+++|+++|.+
T Consensus 18 qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v 58 (102)
T 1s3a_A 18 GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILI 58 (102)
T ss_dssp CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEE
T ss_pred ceeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEE
Confidence 499999999876433 346677788889999999999865
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=25.80 E-value=49 Score=20.63 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=9.7
Q ss_pred CCCCchHHHHHHHhc
Q 038350 8 LSDFHDDLIIVIITF 22 (472)
Q Consensus 8 is~LPd~iL~~Ils~ 22 (472)
|+.||.||-..|+|-
T Consensus 21 F~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 21 FKQLPADIQEEILSG 35 (48)
T ss_dssp TTTSCHHHHHHHTTC
T ss_pred HHHCcHHHHHHHHhc
Confidence 666666666666654
No 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=20.24 E-value=1.1e+02 Score=23.73 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=36.6
Q ss_pred hcccCC-CCcEEEEecccccccccccccccCCCcccCCceeEEEecccC--chhHHHHHHHHhcCC
Q 038350 303 LFNPFS-DARILQVSTSALKIFPTECLLCGRQLFQFWQLEHLTLNTGLE--RFELAAIICLLISSP 365 (472)
Q Consensus 303 ll~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~l~~ll~~~p 365 (472)
+..+++ +++.|+|+.+.+..++. ..+..+.+|+.|.|..+-. .....++...++.-+
T Consensus 25 vP~~lp~~l~~L~Ls~N~l~~l~~------~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~ 84 (130)
T 3rfe_A 25 LPTAFPVDTTELVLTGNNLTALPP------GLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRP 84 (130)
T ss_dssp SCSCCCTTCSEEECTTSCCSSCCT------TTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSS
T ss_pred CCCCCCcCCCEEECCCCcCCccCh------hhhhhccccCEEEecCCCeeccCccHHHHHHHHhCc
Confidence 344555 79999999887765442 3345567888888875422 234566777666544
Done!