BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038352
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 78 YVLYRPHRPEFSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHITFYYDPFVI 137
Y+ RP R ++V + + + ++ D H+ ++ + S NP H++ Y I
Sbjct: 59 YLTLRPKRLIYTVEAASVQEFAIGNNDD----HINAKFSYVIKSYNPEKHVSVRYHSMRI 114
Query: 138 SALSSSDVFLGNGTVPGFFSDKKNQTFLKNVVVSGSIDLDTDSVKSLKSDLKKKNGVSLK 197
S + + + + + F KN+T ++ +VS ++ L + + L+++ K K + ++
Sbjct: 115 ST-AHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAE-KSKGTIEME 172
Query: 198 IKLDTKVKVKVGKLSSKKVGIRVTC 222
+ + +V K S++ ++ C
Sbjct: 173 VYITARVSYKTWIFRSRRRTLKAVC 197
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 55/193 (28%)
Query: 53 CCCCFWTILVILILALLAAIAATALYVLYRPHRPEFSVPSLRLHRLNLT-SSADSSTNHV 111
C CC L A + + L++ R +P+ S+ + + L +S D++T
Sbjct: 15 CTCC-------LSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTT--- 64
Query: 112 ATLLNFTVTSKNPNSHITFYYDPFVIS--------ALSSSDVFLGNGTVPGFFSDKK--- 160
LNF V NPN YYD ++ SS+ V +GN TVP F+ K
Sbjct: 65 ---LNFMVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKA 121
Query: 161 ----------NQTFLKNVVVSGSIDLDTDSVKSLKSDLKKKNGVSLKIKLDTKVKVKVGK 210
NQT L+ V+ +GS ++ L T+V+ K+
Sbjct: 122 KKWGQVKPLNNQTVLRAVLPNGS--------------------AVFRLDLKTQVRFKIVF 161
Query: 211 LSSKKVGIRVTCE 223
+K+ G+ V +
Sbjct: 162 WKTKRYGVEVGAD 174
>sp|B2X1Z4|RPOC2_OEDCA DNA-directed RNA polymerase subunit beta'' OS=Oedogonium cardiacum
GN=rpoC2 PE=3 SV=1
Length = 2617
Score = 36.6 bits (83), Expect = 0.20, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 95 LHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGNG---T 151
L +L + +S + ++NF KN H F + F+ +L S+D T
Sbjct: 682 LKNRSLRNIKNSIKQNKEIVVNFNYLKKNSLKHFIFDHKFFIPISLESTDFVNKENSLIT 741
Query: 152 VPGFFSDKKNQTFL------KNVVVSGSIDLDTDSV--KSLKSDLKKKNGVSLKIKLDTK 203
P FF K + F +N + SG I L V K+L+ ++ KKN ++ K +
Sbjct: 742 SPRFFYQKLSNRFFEWFFNQENQIGSGLIQLSEIFVFKKNLQKEISKKN--QIRKKQEKN 799
Query: 204 VKVKVGKLSSKK 215
VK+K L+ KK
Sbjct: 800 VKLKYHSLTLKK 811
>sp|A4R227|INO80_MAGO7 Putative DNA helicase INO80 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=INO80 PE=3 SV=1
Length = 1944
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 2 SDRVFPSSKPAANGNGTVSAAAPPPVKPPLRPPYRPQPH 40
S ++P PA++ +V+ AA P+ PP RPP P+
Sbjct: 252 SASIYPPRSPASHPQ-SVATAAAEPISPPTRPPRMATPN 289
>sp|Q06135|GAS2_YEAST 1,3-beta-glucanosyltransferase GAS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GAS2 PE=1 SV=1
Length = 555
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 69 LAAIAATALYVLYRPHRPEFSV----PSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNP 124
+ A++A +YVL P+ S+ PS +H S + + LL + ++
Sbjct: 119 MEALSAEGMYVLLDLSEPDISINRENPSWDVHIFERYKSVIDAMSSFPNLLGYFAGNEVT 178
Query: 125 NSHITFYYDPFVISALSSSDVFL 147
N H + PFV +A+ + ++
Sbjct: 179 NDHTNTFASPFVKAAIRDAKEYI 201
>sp|Q5R5V4|ILK_PONAB Integrin-linked protein kinase OS=Pongo abelii GN=ILK PE=2 SV=1
Length = 452
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 205 KVKVGKLSSKKVGIRVTCEGFRAALPKGKTPSVATVDK 242
+V LS+ ++G+RV EG R +P G +P V + K
Sbjct: 389 EVPFADLSNMEIGMRVALEGLRPTIPPGISPHVCKLMK 426
>sp|P0AEL0|FDOI_ECOLI Formate dehydrogenase, cytochrome b556(fdo) subunit OS=Escherichia
coli (strain K12) GN=fdoI PE=1 SV=1
Length = 211
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 48 RRSYRCCCCFWTILVILILALLAAIAATALYVLYRPH-RPEFSVPSLRL 95
R ++ C FW ++ L+L L++ + +++RP+ P FS+P +R
Sbjct: 106 RYNFGQKCVFWAAIIFLVLLLVSGV------IIWRPYFAPAFSIPVIRF 148
>sp|P0AEL1|FDOI_ECOL6 Formate dehydrogenase, cytochrome b556(fdo) subunit OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fdoI
PE=3 SV=1
Length = 211
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 48 RRSYRCCCCFWTILVILILALLAAIAATALYVLYRPH-RPEFSVPSLRL 95
R ++ C FW ++ L+L L++ + +++RP+ P FS+P +R
Sbjct: 106 RYNFGQKCVFWAAIIFLVLLLVSGV------IIWRPYFAPAFSIPVIRF 148
>sp|P0AEL2|FDOI_ECO57 Formate dehydrogenase, cytochrome b556(fdo) subunit OS=Escherichia
coli O157:H7 GN=fdoI PE=3 SV=1
Length = 211
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 48 RRSYRCCCCFWTILVILILALLAAIAATALYVLYRPH-RPEFSVPSLRL 95
R ++ C FW ++ L+L L++ + +++RP+ P FS+P +R
Sbjct: 106 RYNFGQKCVFWAAIIFLVLLLVSGV------IIWRPYFAPAFSIPVIRF 148
>sp|O96772|HSP70_ENCCU Mitochondrial-type heat shock protein 70 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=HSP70 PE=3 SV=1
Length = 592
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 172 GSIDLDTDSVKSLKSDLKKKNGVSLKIKLDTKVKVKVGKLSSKKVGIRVTC 222
G DLD + VK + D K+K G+ L +D ++K G KK + V+C
Sbjct: 233 GGEDLDNEVVKFIVEDFKQKEGIDLSNDVDALGRIKEGAEKIKK-ELSVSC 282
>sp|P34384|YLPD_CAEEL Uncharacterized protein F02A9.4b OS=Caenorhabditis elegans
GN=F02A9.4 PE=2 SV=3
Length = 394
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 135 FVISALSSSDVFLGNGTVPGFFSDKKNQTFLKNVVVSGSIDLDTDSVKSLK------SDL 188
F IS SS+D F + G FSD+K + + + +V +D+D + L +DL
Sbjct: 173 FPISQESSADAFRA---LAGVFSDEKVKNLVIDFIVPQLVDIDFADIYPLADPLAVVTDL 229
Query: 189 KKKNGVSLKIKLDTKVKVKVGKLSSKKVGI 218
K NGV+ +++ +V G+ S++ + +
Sbjct: 230 LKSNGVT---EIEPRVLRSAGENSAEPIYV 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,047,552
Number of Sequences: 539616
Number of extensions: 3853889
Number of successful extensions: 22017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 21827
Number of HSP's gapped (non-prelim): 211
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)