Query 038352
Match_columns 258
No_of_seqs 181 out of 858
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:07:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 8.1E-36 1.7E-40 258.3 26.3 184 50-249 34-217 (219)
2 PF03168 LEA_2: Late embryogen 99.4 2.5E-12 5.4E-17 97.1 8.7 98 118-223 1-100 (101)
3 smart00769 WHy Water Stress an 98.4 4.1E-06 8.9E-11 63.8 10.9 85 110-201 12-97 (100)
4 PF12751 Vac7: Vacuolar segreg 97.6 0.00042 9.2E-09 64.2 9.9 85 49-148 296-381 (387)
5 PF07092 DUF1356: Protein of u 97.5 0.0026 5.5E-08 55.7 13.2 85 81-171 96-181 (238)
6 COG5608 LEA14-like dessication 96.9 0.095 2.1E-06 42.8 14.6 82 84-177 31-113 (161)
7 PLN03160 uncharacterized prote 96.4 0.02 4.3E-07 49.8 8.8 104 48-164 35-147 (219)
8 TIGR03602 streptolysinS bacter 87.0 0.043 9.3E-07 36.0 -3.0 6 51-56 26-31 (56)
9 KOG3950 Gamma/delta sarcoglyca 84.8 2.1 4.6E-05 37.7 5.3 24 107-130 102-125 (292)
10 TIGR02588 conserved hypothetic 78.4 6.6 0.00014 31.0 5.6 48 67-126 13-62 (122)
11 PF10177 DUF2371: Uncharacteri 76.8 8 0.00017 31.3 5.8 31 52-84 34-64 (141)
12 PRK05529 cell division protein 72.7 7.8 0.00017 34.4 5.3 15 85-99 58-72 (255)
13 PF09624 DUF2393: Protein of u 71.9 25 0.00054 28.2 7.7 64 72-150 32-97 (149)
14 PF14155 DUF4307: Domain of un 69.7 6.7 0.00015 30.4 3.7 29 142-173 72-102 (112)
15 PF09307 MHC2-interact: CLIP, 66.7 1.9 4E-05 33.7 0.0 33 49-82 25-57 (114)
16 PF12273 RCR: Chitin synthesis 65.6 2.9 6.3E-05 33.1 0.9 7 58-64 2-8 (130)
17 PRK07021 fliL flagellar basal 65.4 19 0.0004 29.6 5.8 14 130-144 78-91 (162)
18 PHA02844 putative transmembran 65.4 4.5 9.7E-05 29.0 1.7 26 54-79 44-69 (75)
19 COG4698 Uncharacterized protei 65.1 13 0.00028 31.4 4.6 37 56-94 11-47 (197)
20 PRK13183 psbN photosystem II r 64.5 9.7 0.00021 24.7 3.0 24 60-83 9-32 (46)
21 COG1580 FliL Flagellar basal b 64.0 19 0.0004 29.8 5.4 26 56-81 17-42 (159)
22 PF12505 DUF3712: Protein of u 63.6 58 0.0013 25.3 8.0 69 146-221 2-72 (125)
23 PHA02819 hypothetical protein; 63.1 5.1 0.00011 28.4 1.7 25 54-78 42-66 (71)
24 PHA03054 IMV membrane protein; 62.6 5.2 0.00011 28.4 1.6 25 54-78 44-68 (72)
25 PF10907 DUF2749: Protein of u 62.6 9.9 0.00021 26.6 2.9 16 69-84 13-28 (66)
26 PHA02650 hypothetical protein; 61.4 5.5 0.00012 28.9 1.6 26 54-79 45-70 (81)
27 CHL00020 psbN photosystem II p 61.2 11 0.00024 24.2 2.7 24 60-83 6-29 (43)
28 PRK07718 fliL flagellar basal 58.2 25 0.00054 28.3 5.1 9 181-189 111-119 (142)
29 PF09911 DUF2140: Uncharacteri 57.2 17 0.00037 30.7 4.2 27 58-86 5-31 (187)
30 PRK12785 fliL flagellar basal 56.7 37 0.00079 28.1 6.0 14 130-144 86-99 (166)
31 PF02468 PsbN: Photosystem II 55.5 9.6 0.00021 24.4 1.8 23 61-83 7-29 (43)
32 PHA02975 hypothetical protein; 54.3 8.5 0.00019 27.1 1.5 25 54-78 40-64 (69)
33 PRK01844 hypothetical protein; 52.4 14 0.00031 26.4 2.4 20 58-77 4-23 (72)
34 PRK08455 fliL flagellar basal 50.5 21 0.00046 30.0 3.7 13 131-144 103-115 (182)
35 PF12273 RCR: Chitin synthesis 49.1 14 0.0003 29.1 2.3 13 56-68 3-15 (130)
36 PRK06531 yajC preprotein trans 48.9 7 0.00015 30.5 0.5 12 74-85 13-24 (113)
37 PRK13150 cytochrome c-type bio 48.4 1.2E+02 0.0027 25.0 7.8 67 116-187 79-146 (159)
38 PF09604 Potass_KdpF: F subuni 47.1 7.4 0.00016 22.0 0.3 18 68-85 7-24 (25)
39 COG3763 Uncharacterized protei 46.9 19 0.00041 25.6 2.3 19 58-76 4-22 (71)
40 PRK10893 lipopolysaccharide ex 46.0 1.4E+02 0.0031 25.2 8.1 20 82-101 37-56 (192)
41 PF14283 DUF4366: Domain of un 44.7 21 0.00045 31.1 2.8 10 79-88 181-190 (218)
42 PF05478 Prominin: Prominin; 42.2 13 0.00028 38.5 1.4 23 52-74 137-159 (806)
43 PF15050 SCIMP: SCIMP protein 41.9 10 0.00022 29.8 0.4 25 57-82 8-32 (133)
44 PRK00523 hypothetical protein; 41.9 26 0.00056 25.1 2.4 20 58-77 5-24 (72)
45 PF07509 DUF1523: Protein of u 41.7 1.4E+02 0.003 25.1 7.1 23 80-102 23-45 (175)
46 PF07787 DUF1625: Protein of u 40.8 28 0.00061 30.6 3.1 12 72-83 237-248 (248)
47 PHA02692 hypothetical protein; 40.7 17 0.00036 25.8 1.3 11 54-64 41-51 (70)
48 PF11770 GAPT: GRB2-binding ad 40.5 35 0.00077 27.9 3.3 27 64-90 17-43 (158)
49 PF11906 DUF3426: Protein of u 40.2 1.1E+02 0.0024 24.2 6.4 59 88-152 48-106 (149)
50 PF15145 DUF4577: Domain of un 39.9 21 0.00046 27.7 1.9 24 60-83 65-88 (128)
51 KOG0809 SNARE protein TLG2/Syn 39.7 20 0.00043 32.6 1.9 7 50-56 281-287 (305)
52 PRK14758 hypothetical protein; 39.6 40 0.00087 19.2 2.5 18 62-79 9-26 (27)
53 PF12575 DUF3753: Protein of u 39.5 24 0.00052 25.2 2.0 23 56-78 46-68 (72)
54 PRK14759 potassium-transportin 37.5 14 0.0003 21.7 0.4 18 68-85 11-28 (29)
55 TIGR02115 potass_kdpF K+-trans 37.1 6.5 0.00014 22.5 -1.0 18 68-85 6-23 (26)
56 PRK06975 bifunctional uroporph 36.7 1.2E+02 0.0027 30.6 7.3 14 30-43 305-318 (656)
57 cd07912 Tweety_N N-terminal do 36.2 27 0.00058 33.4 2.3 19 55-74 81-99 (418)
58 PHA03049 IMV membrane protein; 35.7 15 0.00033 25.7 0.5 21 63-83 5-25 (68)
59 PF04478 Mid2: Mid2 like cell 35.3 31 0.00067 28.4 2.2 20 69-88 63-82 (154)
60 PF03929 PepSY_TM: PepSY-assoc 35.0 47 0.001 19.0 2.4 20 58-77 7-26 (27)
61 PF05478 Prominin: Prominin; 33.6 44 0.00096 34.6 3.7 24 48-71 137-160 (806)
62 PF09753 Use1: Membrane fusion 33.2 46 0.001 29.2 3.3 10 55-64 228-237 (251)
63 PF15012 DUF4519: Domain of un 33.0 50 0.0011 22.4 2.6 13 72-84 44-56 (56)
64 COG5009 MrcA Membrane carboxyp 32.9 22 0.00047 36.4 1.2 34 56-89 5-38 (797)
65 PF11669 WBP-1: WW domain-bind 32.6 52 0.0011 25.0 3.0 14 58-71 22-35 (102)
66 PF15330 SIT: SHP2-interacting 32.5 28 0.00062 26.8 1.6 24 58-81 1-25 (107)
67 PF05961 Chordopox_A13L: Chord 31.6 19 0.0004 25.4 0.4 21 63-83 5-25 (68)
68 PF06092 DUF943: Enterobacteri 31.5 30 0.00064 28.6 1.6 15 69-83 14-28 (157)
69 PF02009 Rifin_STEVOR: Rifin/s 31.5 18 0.0004 33.0 0.4 18 65-82 263-280 (299)
70 PF13396 PLDc_N: Phospholipase 31.4 55 0.0012 20.6 2.6 24 56-84 23-46 (46)
71 PF04906 Tweety: Tweety; Inte 30.1 61 0.0013 30.8 3.7 13 52-64 58-70 (406)
72 cd01324 cbb3_Oxidase_CcoQ Cyto 30.0 28 0.00061 22.7 1.0 13 72-84 22-34 (48)
73 KOG2927 Membrane component of 29.7 30 0.00065 32.3 1.5 26 57-82 226-251 (372)
74 PF05545 FixQ: Cbb3-type cytoc 29.4 20 0.00044 23.2 0.2 13 73-85 22-34 (49)
75 COG5294 Uncharacterized protei 29.2 1.3E+02 0.0029 23.3 4.7 15 113-127 52-66 (113)
76 PF04573 SPC22: Signal peptida 28.6 1.9E+02 0.004 24.2 6.0 11 81-91 32-42 (175)
77 PF12505 DUF3712: Protein of u 28.4 1.3E+02 0.0028 23.3 4.8 26 112-138 99-124 (125)
78 KOG2621 Prohibitins and stomat 28.3 1.9E+02 0.0041 26.2 6.2 38 86-125 90-131 (288)
79 PF11395 DUF2873: Protein of u 28.0 31 0.00067 21.4 0.9 10 72-81 23-32 (43)
80 TIGR02745 ccoG_rdxA_fixG cytoc 26.8 5.8E+02 0.013 24.6 11.1 19 154-172 382-400 (434)
81 PF01102 Glycophorin_A: Glycop 26.4 25 0.00055 27.7 0.3 23 70-92 78-101 (122)
82 COG2332 CcmE Cytochrome c-type 26.1 3.4E+02 0.0073 22.3 6.8 60 122-187 79-140 (153)
83 COG1589 FtsQ Cell division sep 26.0 71 0.0015 28.4 3.2 29 71-99 43-71 (269)
84 PF14654 Epiglycanin_C: Mucin, 25.6 73 0.0016 24.2 2.7 20 61-80 23-42 (106)
85 PF14828 Amnionless: Amnionles 24.3 40 0.00087 32.4 1.4 21 68-88 349-369 (437)
86 PTZ00116 signal peptidase; Pro 24.2 2.9E+02 0.0063 23.4 6.3 48 83-132 36-86 (185)
87 PF09125 COX2-transmemb: Cytoc 24.1 1.2E+02 0.0026 18.7 2.9 12 58-69 16-27 (38)
88 KOG4298 CAP-binding protein co 23.8 1.2E+02 0.0025 26.0 3.8 32 55-86 147-179 (245)
89 PF11337 DUF3139: Protein of u 23.6 56 0.0012 23.7 1.7 11 73-83 20-30 (85)
90 PRK14762 membrane protein; Pro 23.6 1.5E+02 0.0031 16.8 2.9 10 56-65 4-13 (27)
91 COG3671 Predicted membrane pro 23.5 31 0.00067 27.1 0.4 6 77-82 98-103 (125)
92 PF14257 DUF4349: Domain of un 23.3 84 0.0018 27.6 3.2 14 69-82 249-262 (262)
93 PF14979 TMEM52: Transmembrane 23.1 93 0.002 25.4 3.0 23 55-77 20-42 (154)
94 PF07423 DUF1510: Protein of u 22.7 54 0.0012 28.5 1.7 6 182-187 153-158 (217)
95 PF14283 DUF4366: Domain of un 22.5 85 0.0018 27.3 2.9 19 73-91 172-190 (218)
96 PF06129 Chordopox_G3: Chordop 22.3 1.1E+02 0.0023 23.7 3.1 26 115-140 51-82 (109)
97 PF06024 DUF912: Nucleopolyhed 22.1 1.3E+02 0.0027 22.8 3.5 9 75-83 80-89 (101)
98 PF02476 US2: US2 family; Int 21.9 77 0.0017 25.2 2.3 7 49-55 120-126 (126)
99 COG5353 Uncharacterized protei 21.8 45 0.00098 27.3 1.0 28 56-83 6-33 (161)
100 PF03083 MtN3_slv: Sugar efflu 21.6 1.1E+02 0.0023 21.9 3.0 33 52-84 43-85 (87)
101 PRK11901 hypothetical protein; 21.6 1.8E+02 0.0039 26.9 4.9 8 96-103 77-84 (327)
102 PRK13159 cytochrome c-type bio 20.8 4.8E+02 0.01 21.4 8.2 16 172-187 124-139 (155)
103 PF12751 Vac7: Vacuolar segreg 20.2 87 0.0019 29.6 2.6 29 47-75 297-325 (387)
104 PF13807 GNVR: G-rich domain o 20.2 38 0.00083 24.3 0.2 7 70-76 68-74 (82)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=8.1e-36 Score=258.27 Aligned_cols=184 Identities=18% Similarity=0.269 Sum_probs=150.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHheeeeEeeCCCceEEEeeEEEeeeeccCCCCCCCceEeEEEEEEEEEeCCCceEE
Q 038352 50 SYRCCCCFWTILVILILALLAAIAATALYVLYRPHRPEFSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHIT 129 (258)
Q Consensus 50 ~~~~~c~~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P~fsV~s~~v~~fnls~~s~~~~~~l~~~~~ltl~a~NPN~ki~ 129 (258)
++||+||+|+++++++ |++++++++|++||||+|+|+|++++|++|++++.+ .....+|++++++++++|||. ++
T Consensus 34 ~~~~~c~~~~~a~~l~---l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~-~~~~~~n~tl~~~v~v~NPN~-~~ 108 (219)
T PLN03160 34 RNCIKCCGCITATLLI---LATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNT-TLRPGTNITLIADVSVKNPNV-AS 108 (219)
T ss_pred ccceEEHHHHHHHHHH---HHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCC-CCceeEEEEEEEEEEEECCCc-ee
Confidence 4455555555555443 355667778999999999999999999999997632 123478899999999999998 89
Q ss_pred EEEcCcEEEEEeeCCeeeecccCCceeccCCCcEEEEEEEEEcccccChhHHHHHHHhhhcCCeEEEEEEEEEEEEEEEe
Q 038352 130 FYYDPFVISALSSSDVFLGNGTVPGFFSDKKNQTFLKNVVVSGSIDLDTDSVKSLKSDLKKKNGVSLKIKLDTKVKVKVG 209 (258)
Q Consensus 130 i~Y~~~~v~v~~y~~~~Lg~~~vp~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~~d~~s~g~v~l~v~v~~~vr~kvg 209 (258)
|+|++++++++ |+|..+|.+.+|+|+|++++++.+.+++...+..+.++ ..|.+|+.+ |.++|++.+++++++++|
T Consensus 109 ~~Y~~~~~~v~-Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~-G~v~l~~~~~v~gkVkv~ 184 (219)
T PLN03160 109 FKYSNTTTTIY-YGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISS-GLLNMNSYTRIGGKVKIL 184 (219)
T ss_pred EEEcCeEEEEE-ECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhC-CeEEEEEEEEEEEEEEEE
Confidence 99999999999 99999999999999999999999999987655444332 468899665 899999999999999999
Q ss_pred EEEeceeeEEEEcCceEecccCCCCCccceeccCcceeee
Q 038352 210 KLSSKKVGIRVTCEGFRAALPKGKTPSVATVDKSKCKVDL 249 (258)
Q Consensus 210 ~~~s~~~~v~V~C~~v~~~~~~~~~~~~~~~~~~~C~v~~ 249 (258)
+++++++.++++|+ +.+.+. ...+++++|+.++
T Consensus 185 ~i~k~~v~~~v~C~-v~V~~~------~~~i~~~~C~~~~ 217 (219)
T PLN03160 185 KIIKKHVVVKMNCT-MTVNIT------SQAIQGQKCKRHV 217 (219)
T ss_pred EEEEEEEEEEEEeE-EEEECC------CCEEeccEecccc
Confidence 99999999999999 444442 2478899998664
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.37 E-value=2.5e-12 Score=97.13 Aligned_cols=98 Identities=27% Similarity=0.370 Sum_probs=75.0
Q ss_pred EEEEeCCCceEEEEEcCcEEEEEeeCCeeee-cccCCceeccCCCcEEEEEEEEEcccccChhHHHHHHHhhhcCCeEEE
Q 038352 118 TVTSKNPNSHITFYYDPFVISALSSSDVFLG-NGTVPGFFSDKKNQTFLKNVVVSGSIDLDTDSVKSLKSDLKKKNGVSL 196 (258)
Q Consensus 118 tl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg-~~~vp~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~~d~~s~g~v~l 196 (258)
+|+++|||. ++++|++++++++ |+|..+| ....++|.|++++++.+.+.+..+...+ .+.|.++. + |...+
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~-~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~-~~~~~ 72 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVY-YNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-A-GRVPF 72 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEE-ESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-H-TTSCE
T ss_pred CEEEECCCc-eeEEEeCEEEEEE-ECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-c-cccce
Confidence 689999998 9999999999999 9999999 7788999999999999999888876544 44555664 3 57788
Q ss_pred EEEEEEEEEEEE-eEEEeceeeEEEEcC
Q 038352 197 KIKLDTKVKVKV-GKLSSKKVGIRVTCE 223 (258)
Q Consensus 197 ~v~v~~~vr~kv-g~~~s~~~~v~V~C~ 223 (258)
++.+++++++++ +.....++.+.++|+
T Consensus 73 ~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 73 DVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 888888888884 444334455666654
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.42 E-value=4.1e-06 Score=63.77 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=66.7
Q ss_pred eEeEEEEEEEEEeCCCceEEEEEcCcEEEEEeeCCeeeecccCC-ceeccCCCcEEEEEEEEEcccccChhHHHHHHHhh
Q 038352 110 HVATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGNGTVP-GFFSDKKNQTFLKNVVVSGSIDLDTDSVKSLKSDL 188 (258)
Q Consensus 110 ~l~~~~~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~~~vp-~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~~d~ 188 (258)
.++.++.+++.+.|||. +.+.|++++.+++ |+|..+|++..+ ++..++++++.+++++..+ ... ...+..++
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~-~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~----~~~~~~~l 84 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLY-LNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL----AEALIWHI 84 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEE-ECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH----hHHHHHhh
Confidence 57799999999999996 8999999999999 999999999985 7999999999999999873 222 23455555
Q ss_pred hcCCeEEEEEEEE
Q 038352 189 KKKNGVSLKIKLD 201 (258)
Q Consensus 189 ~s~g~v~l~v~v~ 201 (258)
.++..++++++.+
T Consensus 85 ~~~~~~~y~l~g~ 97 (100)
T smart00769 85 ANGEEIPYRLDGK 97 (100)
T ss_pred ccCCCccEEEEEE
Confidence 5433355544443
No 4
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.62 E-value=0.00042 Score=64.17 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=49.6
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHheeeeEeeCCCceEEEeeEEEeeee-ccCCCCCCCceEeEEEEEEEEEeCCCce
Q 038352 49 RSYRCCCCFWTILVILILALLAAIAATALYVLYRPHRPEFSVPSLRLHRLN-LTSSADSSTNHVATLLNFTVTSKNPNSH 127 (258)
Q Consensus 49 r~~~~~c~~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P~fsV~s~~v~~fn-ls~~s~~~~~~l~~~~~ltl~a~NPN~k 127 (258)
|++|.+..+|+++.+++|+++.++++++| ..-+| ++++.|..+. +-.+ .--.-|+++|.|.|||.
T Consensus 296 r~~~~r~~~c~~~~i~~lL~ig~~~gFv~-AttKp------L~~v~v~~I~NVlaS------~qELmfdl~V~A~NPn~- 361 (387)
T PF12751_consen 296 RSWFSRFASCIYLSILLLLVIGFAIGFVF-ATTKP------LTDVQVVSIQNVLAS------EQELMFDLTVEAFNPNW- 361 (387)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHhhh-hcCcc------cccceEEEeeeeeec------cceEEEeeEEEEECCCe-
Confidence 44554444444444444444444444433 34455 4555554442 2111 23477999999999995
Q ss_pred EEEEEcCcEEEEEeeCCeeee
Q 038352 128 ITFYYDPFVISALSSSDVFLG 148 (258)
Q Consensus 128 i~i~Y~~~~v~v~~y~~~~Lg 148 (258)
+.|..++.+++|+ -+...+|
T Consensus 362 ~~V~I~d~dldIF-AKS~yvg 381 (387)
T PF12751_consen 362 FTVTIDDMDLDIF-AKSRYVG 381 (387)
T ss_pred EEEEeccceeeeE-ecCCccC
Confidence 8999999999998 4443333
No 5
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.54 E-value=0.0026 Score=55.65 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=60.4
Q ss_pred eeCCCceEEEeeEEEeeeeccCCCCCCCceEeEEEEEEEEEeCCCceEEEEEcCcEEEEEeeCCeeeecccCCc-eeccC
Q 038352 81 YRPHRPEFSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGNGTVPG-FFSDK 159 (258)
Q Consensus 81 ~rP~~P~fsV~s~~v~~fnls~~s~~~~~~l~~~~~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~~~vp~-F~q~~ 159 (258)
+=||.-.++-.++......++... .++..++.-+|.++|+|- ..+.-..+++++. |....+|.+.... ...++
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~~----~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~-~~~~VVG~~~~~~~~~I~P 169 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPDK----STVQLNITNTLNISNPNF-YPVTVTNLSIQVL-YMKTVVGKGKNSNITVIGP 169 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCCC----CEEEEEEEEEEEccCCCE-EEEEEEeEEEEEE-EEEeEEeeeEecceEEecc
Confidence 347665555555444444444332 278889999999999995 8899999999999 8889999997754 36666
Q ss_pred CCcEEEEEEEEE
Q 038352 160 KNQTFLKNVVVS 171 (258)
Q Consensus 160 ~~tt~v~~~l~~ 171 (258)
++.+.+..++..
T Consensus 170 rs~~q~~~tV~t 181 (238)
T PF07092_consen 170 RSSKQVNYTVKT 181 (238)
T ss_pred cCCceEEEEeeE
Confidence 766666665543
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=96.85 E-value=0.095 Score=42.78 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=63.1
Q ss_pred CCceEEEeeEEEeeeeccCCCCCCCceEeEEEEEEEEEeCCCceEEEEEcCcEEEEEeeCCeeeecccC-CceeccCCCc
Q 038352 84 HRPEFSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGNGTV-PGFFSDKKNQ 162 (258)
Q Consensus 84 ~~P~fsV~s~~v~~fnls~~s~~~~~~l~~~~~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~~~v-p~F~q~~~~t 162 (258)
+.|...--.+..-.. +. ...++..++.+.|||. +.+-..+.+..++ -+|..+|.|.. .++..++++.
T Consensus 31 ~~p~ve~~ka~wGkv--t~--------s~~EiV~t~KiyNPN~-fPipVtgl~y~vy-mN~Iki~eG~~~k~~~v~p~S~ 98 (161)
T COG5608 31 KKPGVESMKAKWGKV--TN--------SETEIVGTLKIYNPNP-FPIPVTGLQYAVY-MNDIKIGEGEILKGTTVPPNSR 98 (161)
T ss_pred CCCCceEEEEEEEEE--ec--------cceEEEEEEEecCCCC-cceeeeceEEEEE-EcceEeeccccccceEECCCCe
Confidence 456655545544432 22 2368999999999997 8888889999998 89999999976 5699999999
Q ss_pred EEEEEEEEEcccccC
Q 038352 163 TFLKNVVVSGSIDLD 177 (258)
Q Consensus 163 t~v~~~l~~~~~~l~ 177 (258)
..+.+.+..+.-.+.
T Consensus 99 ~tvdv~l~~d~~~~k 113 (161)
T COG5608 99 ETVDVPLRLDNSKIK 113 (161)
T ss_pred EEEEEEEEEehHHHH
Confidence 999999987764443
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=96.43 E-value=0.02 Score=49.80 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=59.2
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHheeeeEeeC--CCceEEEeeEEEee-------eeccCCCCCCCceEeEEEEEE
Q 038352 48 RRSYRCCCCFWTILVILILALLAAIAATALYVLYRP--HRPEFSVPSLRLHR-------LNLTSSADSSTNHVATLLNFT 118 (258)
Q Consensus 48 ~r~~~~~c~~~~~~~~~~l~~l~~i~~~i~~lv~rP--~~P~fsV~s~~v~~-------fnls~~s~~~~~~l~~~~~lt 118 (258)
++.+||+|++-+++++.+++++ ++++++=-=.| +.-.++|+++.+.. +|++-..+- ..-|.|. +.
T Consensus 35 ~~~~c~~~~~a~~l~l~~v~~~---l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v--~v~NPN~-~~ 108 (219)
T PLN03160 35 NCIKCCGCITATLLILATTILV---LVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADV--SVKNPNV-AS 108 (219)
T ss_pred cceEEHHHHHHHHHHHHHHHHh---eeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEE--EEECCCc-ee
Confidence 5677777777777777776543 34455555666 35667777776643 222110000 0113444 44
Q ss_pred EEEeCCCceEEEEEcCcEEEEEeeCCeeeecccCCceeccCCCcEE
Q 038352 119 VTSKNPNSHITFYYDPFVISALSSSDVFLGNGTVPGFFSDKKNQTF 164 (258)
Q Consensus 119 l~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~~~vp~F~q~~~~tt~ 164 (258)
+.-. |..+.++|++..+.- ..+..+.++++.+..-+.+.
T Consensus 109 ~~Y~--~~~~~v~Y~g~~vG~-----a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 109 FKYS--NTTTTIYYGGTVVGE-----ARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred EEEc--CeEEEEEECCEEEEE-----EEcCCcccCCCCeEEEEEEE
Confidence 4444 345889998755443 34666777777777777664
No 8
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=86.99 E-value=0.043 Score=35.96 Aligned_cols=6 Identities=67% Similarity=2.400 Sum_probs=2.3
Q ss_pred ccchhH
Q 038352 51 YRCCCC 56 (258)
Q Consensus 51 ~~~~c~ 56 (258)
||||||
T Consensus 26 cccccc 31 (56)
T TIGR03602 26 CCCCCC 31 (56)
T ss_pred eEEEec
Confidence 333333
No 9
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=84.78 E-value=2.1 Score=37.65 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=19.6
Q ss_pred CCceEeEEEEEEEEEeCCCceEEE
Q 038352 107 STNHVATLLNFTVTSKNPNSHITF 130 (258)
Q Consensus 107 ~~~~l~~~~~ltl~a~NPN~ki~i 130 (258)
++..+...=++++.++|||.++.=
T Consensus 102 ~~l~~~S~rnvtvnarn~~g~v~~ 125 (292)
T KOG3950|consen 102 SPLYLQSARNVTVNARNPNGKVTG 125 (292)
T ss_pred CceEEEeccCeeEEccCCCCceee
Confidence 346778888999999999998763
No 10
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=78.40 E-value=6.6 Score=30.97 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHheeee--EeeCCCceEEEeeEEEeeeeccCCCCCCCceEeEEEEEEEEEeCCCc
Q 038352 67 ALLAAIAATALYV--LYRPHRPEFSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNS 126 (258)
Q Consensus 67 ~~l~~i~~~i~~l--v~rP~~P~fsV~s~~v~~fnls~~s~~~~~~l~~~~~ltl~a~NPN~ 126 (258)
++|++++++++|. .-+++.|.+++......+ .....+-+-++++|--.
T Consensus 13 ~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r------------~~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 13 LILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER------------MQTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEeehheeE------------EeCCEEEEEEEEEeCCC
Confidence 3455666777664 466789999887766643 22344666677777654
No 11
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=76.81 E-value=8 Score=31.35 Aligned_cols=31 Identities=39% Similarity=0.494 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHheeeeEeeCC
Q 038352 52 RCCCCFWTILVILILALLAAIAATALYVLYRPH 84 (258)
Q Consensus 52 ~~~c~~~~~~~~~~l~~l~~i~~~i~~lv~rP~ 84 (258)
.||-..++++++-+|++++|++..++ =|.|+
T Consensus 34 rl~s~Sg~~l~lG~lvllvGiaMAv~--GYwp~ 64 (141)
T PF10177_consen 34 RLCSPSGLFLLLGILVLLVGIAMAVL--GYWPK 64 (141)
T ss_pred EEecHHHHHHHHHHHHHHHhhHhhee--ecccc
Confidence 33344444455555666677665543 24666
No 12
>PRK05529 cell division protein FtsQ; Provisional
Probab=72.67 E-value=7.8 Score=34.36 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=12.6
Q ss_pred CceEEEeeEEEeeee
Q 038352 85 RPEFSVPSLRLHRLN 99 (258)
Q Consensus 85 ~P~fsV~s~~v~~fn 99 (258)
.|.|.|.++.|++-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 489999999998754
No 13
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=71.88 E-value=25 Score=28.18 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=38.1
Q ss_pred HHHheeeeEeeC--CCceEEEeeEEEeeeeccCCCCCCCceEeEEEEEEEEEeCCCceEEEEEcCcEEEEEeeCCeeeec
Q 038352 72 IAATALYVLYRP--HRPEFSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGN 149 (258)
Q Consensus 72 i~~~i~~lv~rP--~~P~fsV~s~~v~~fnls~~s~~~~~~l~~~~~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~ 149 (258)
++.+++|.++.. +.+..++.+.+- ++. +-.+.+..+++|-.+ ..+..=..++++. .++...++
T Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~--l~~-----------~~~~~v~g~V~N~g~-~~i~~c~i~~~l~-~~~~~~~n 96 (149)
T PF09624_consen 32 LIPFFGYYWLDKYLKKIELTLTSQKR--LQY-----------SESFYVDGTVTNTGK-FTIKKCKITVKLY-NDKQVSGN 96 (149)
T ss_pred HHHHHHHHHHhhhcCCceEEEeeeee--eee-----------ccEEEEEEEEEECCC-CEeeEEEEEEEEE-eCCCccCc
Confidence 344455555544 456666655432 322 244777789999885 5677767788887 65544444
Q ss_pred c
Q 038352 150 G 150 (258)
Q Consensus 150 ~ 150 (258)
.
T Consensus 97 ~ 97 (149)
T PF09624_consen 97 K 97 (149)
T ss_pred h
Confidence 3
No 14
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=69.66 E-value=6.7 Score=30.37 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=14.9
Q ss_pred eCCeeeeccc--CCceeccCCCcEEEEEEEEEcc
Q 038352 142 SSDVFLGNGT--VPGFFSDKKNQTFLKNVVVSGS 173 (258)
Q Consensus 142 y~~~~Lg~~~--vp~F~q~~~~tt~v~~~l~~~~ 173 (258)
|++..+|.-. +|+ +...+..+.+.+....
T Consensus 72 ~d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt~ 102 (112)
T PF14155_consen 72 YDGAEVGRREVLVPP---SGERTVRVTVTVRTTA 102 (112)
T ss_pred CCCCEEEEEEEEECC---CCCcEEEEEEEEEecC
Confidence 5666677553 355 3334444555554433
No 15
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=66.75 E-value=1.9 Score=33.68 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHheeeeEee
Q 038352 49 RSYRCCCCFWTILVILILALLAAIAATALYVLYR 82 (258)
Q Consensus 49 r~~~~~c~~~~~~~~~~l~~l~~i~~~i~~lv~r 82 (258)
|+.|.+++.|..+.+|+.++|+|-++ ..|++|.
T Consensus 25 ~~s~sra~~vagltvLa~LLiAGQa~-TaYfv~~ 57 (114)
T PF09307_consen 25 RGSCSRALKVAGLTVLACLLIAGQAV-TAYFVFQ 57 (114)
T ss_dssp ----------------------------------
T ss_pred CCCccchhHHHHHHHHHHHHHHhHHH-HHHHHHH
Confidence 45677889998888887777766554 4576776
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=65.63 E-value=2.9 Score=33.07 Aligned_cols=7 Identities=29% Similarity=1.232 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 038352 58 WTILVIL 64 (258)
Q Consensus 58 ~~~~~~~ 64 (258)
|++++++
T Consensus 2 W~l~~ii 8 (130)
T PF12273_consen 2 WVLFAII 8 (130)
T ss_pred eeeHHHH
Confidence 4444333
No 17
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=65.44 E-value=19 Score=29.62 Aligned_cols=14 Identities=7% Similarity=-0.325 Sum_probs=7.2
Q ss_pred EEEcCcEEEEEeeCC
Q 038352 130 FYYDPFVISALSSSD 144 (258)
Q Consensus 130 i~Y~~~~v~v~~y~~ 144 (258)
.+|=..++++. +.+
T Consensus 78 ~rylkv~i~L~-~~~ 91 (162)
T PRK07021 78 DRVLYVGLTLR-LPD 91 (162)
T ss_pred ceEEEEEEEEE-ECC
Confidence 45555555555 443
No 18
>PHA02844 putative transmembrane protein; Provisional
Probab=65.40 E-value=4.5 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHheeee
Q 038352 54 CCCFWTILVILILALLAAIAATALYV 79 (258)
Q Consensus 54 ~c~~~~~~~~~~l~~l~~i~~~i~~l 79 (258)
|+..|..+++++++++++++...+||
T Consensus 44 ~~~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 44 CSSSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777766555555555555555
No 19
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.11 E-value=13 Score=31.39 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHheeeeEeeCCCceEEEeeEE
Q 038352 56 CFWTILVILILALLAAIAATALYVLYRPHRPEFSVPSLR 94 (258)
Q Consensus 56 ~~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P~fsV~s~~ 94 (258)
.-|+|.+|++|.++ ++++++.+++.|+.|...+.+.+
T Consensus 11 WKw~f~iLLAln~l--~~~~i~~~vlsp~ee~t~~~~a~ 47 (197)
T COG4698 11 WKWLFFILLALNTL--LAVLIALFVLSPREEPTHLEDAS 47 (197)
T ss_pred HHHHHHHHHHHHHH--HHHHhheeeccCCCCCchhhccC
Confidence 45555555554443 44667777899998766665554
No 20
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=64.50 E-value=9.7 Score=24.73 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHheeeeEeeC
Q 038352 60 ILVILILALLAAIAATALYVLYRP 83 (258)
Q Consensus 60 ~~~~~~l~~l~~i~~~i~~lv~rP 83 (258)
++++++..+|+++.+..+|..|-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 455667778889999999999887
No 21
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=63.98 E-value=19 Score=29.81 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHheeeeEe
Q 038352 56 CFWTILVILILALLAAIAATALYVLY 81 (258)
Q Consensus 56 ~~~~~~~~~~l~~l~~i~~~i~~lv~ 81 (258)
..|++.++++.++++|+++..+|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 67888777777777777777777775
No 22
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=63.64 E-value=58 Score=25.28 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=41.8
Q ss_pred eeecccCCceeccCCCcE--EEEEEEEEcccccChhHHHHHHHhhhcCCeEEEEEEEEEEEEEEEeEEEeceeeEEEE
Q 038352 146 FLGNGTVPGFFSDKKNQT--FLKNVVVSGSIDLDTDSVKSLKSDLKKKNGVSLKIKLDTKVKVKVGKLSSKKVGIRVT 221 (258)
Q Consensus 146 ~Lg~~~vp~F~q~~~~tt--~v~~~l~~~~~~l~~~~~~~L~~d~~s~g~v~l~v~v~~~vr~kvg~~~s~~~~v~V~ 221 (258)
++|...+|+... +++.+ .....+.. .+.+...++.+++-.+..+.+.++.+ .+.++|+++...+.++..
T Consensus 2 ~f~~~~lP~~~~-~~~~~~~~~~~~l~i----~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~~k~ 72 (125)
T PF12505_consen 2 PFATLDLPQIKI-KGNGTISIIDQTLTI----TDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPFDKT 72 (125)
T ss_pred ceEEEECCCEEe-cCCceEEEeeeeEEe----cCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEeecce
Confidence 467788898888 33322 22323322 34455667777766656677777766 478889887665554443
No 23
>PHA02819 hypothetical protein; Provisional
Probab=63.13 E-value=5.1 Score=28.38 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHheee
Q 038352 54 CCCFWTILVILILALLAAIAATALY 78 (258)
Q Consensus 54 ~c~~~~~~~~~~l~~l~~i~~~i~~ 78 (258)
|+..|..+++++++++++++...+|
T Consensus 42 ~~~~~~~~ii~l~~~~~~~~~~flY 66 (71)
T PHA02819 42 KSFLRYYLIIGLVTIVFVIIFIIFY 66 (71)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577776666655444444444444
No 24
>PHA03054 IMV membrane protein; Provisional
Probab=62.64 E-value=5.2 Score=28.38 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHheee
Q 038352 54 CCCFWTILVILILALLAAIAATALY 78 (258)
Q Consensus 54 ~c~~~~~~~~~~l~~l~~i~~~i~~ 78 (258)
||..|..+++++++++++++...+|
T Consensus 44 ~~~~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567766666654444444433344
No 25
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=62.62 E-value=9.9 Score=26.56 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=12.3
Q ss_pred HHHHHHheeeeEeeCC
Q 038352 69 LAAIAATALYVLYRPH 84 (258)
Q Consensus 69 l~~i~~~i~~lv~rP~ 84 (258)
+.+.++.+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4556677789999997
No 26
>PHA02650 hypothetical protein; Provisional
Probab=61.40 E-value=5.5 Score=28.87 Aligned_cols=26 Identities=12% Similarity=0.099 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHheeee
Q 038352 54 CCCFWTILVILILALLAAIAATALYV 79 (258)
Q Consensus 54 ~c~~~~~~~~~~l~~l~~i~~~i~~l 79 (258)
|+..|..+++++++++++++...+||
T Consensus 45 ~~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777776666555554444444554
No 27
>CHL00020 psbN photosystem II protein N
Probab=61.22 E-value=11 Score=24.16 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHheeeeEeeC
Q 038352 60 ILVILILALLAAIAATALYVLYRP 83 (258)
Q Consensus 60 ~~~~~~l~~l~~i~~~i~~lv~rP 83 (258)
++++++..+|+++.+..+|..|-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 455666778889999999998887
No 28
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=58.16 E-value=25 Score=28.28 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=4.5
Q ss_pred HHHHHHhhh
Q 038352 181 VKSLKSDLK 189 (258)
Q Consensus 181 ~~~L~~d~~ 189 (258)
...|++|+.
T Consensus 111 ~~~Lr~el~ 119 (142)
T PRK07718 111 LEALKEQLK 119 (142)
T ss_pred HHHHHHHHH
Confidence 345555544
No 29
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=57.19 E-value=17 Score=30.71 Aligned_cols=27 Identities=33% Similarity=0.812 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHheeeeEeeCCCc
Q 038352 58 WTILVILILALLAAIAATALYVLYRPHRP 86 (258)
Q Consensus 58 ~~~~~~~~l~~l~~i~~~i~~lv~rP~~P 86 (258)
|.|++|+ .+++++++.+++.+++|..|
T Consensus 5 ~aF~~Ll--a~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 5 WAFLILL--ALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHH--HHHHHHHhheeeEEEccCCC
Confidence 5555544 44566677788889999866
No 30
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.72 E-value=37 Score=28.08 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=7.6
Q ss_pred EEEcCcEEEEEeeCC
Q 038352 130 FYYDPFVISALSSSD 144 (258)
Q Consensus 130 i~Y~~~~v~v~~y~~ 144 (258)
.+|=...+++. +.+
T Consensus 86 ~ryLkv~i~L~-~~~ 99 (166)
T PRK12785 86 VQYLKLKVVLE-VKD 99 (166)
T ss_pred ceEEEEEEEEE-ECC
Confidence 35655556665 444
No 31
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=55.55 E-value=9.6 Score=24.44 Aligned_cols=23 Identities=39% Similarity=0.701 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHheeeeEeeC
Q 038352 61 LVILILALLAAIAATALYVLYRP 83 (258)
Q Consensus 61 ~~~~~l~~l~~i~~~i~~lv~rP 83 (258)
+.+++..+|+++.+..+|..|-|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 45566677888899999999876
No 32
>PHA02975 hypothetical protein; Provisional
Probab=54.35 E-value=8.5 Score=27.13 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHheee
Q 038352 54 CCCFWTILVILILALLAAIAATALY 78 (258)
Q Consensus 54 ~c~~~~~~~~~~l~~l~~i~~~i~~ 78 (258)
++..|..+++++++++++++...+|
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flY 64 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLY 64 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5567766666654444444433344
No 33
>PRK01844 hypothetical protein; Provisional
Probab=52.35 E-value=14 Score=26.37 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhee
Q 038352 58 WTILVILILALLAAIAATAL 77 (258)
Q Consensus 58 ~~~~~~~~l~~l~~i~~~i~ 77 (258)
|+.+++.++.+++|++++.+
T Consensus 4 ~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555666677666544
No 34
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=50.53 E-value=21 Score=30.04 Aligned_cols=13 Identities=31% Similarity=0.071 Sum_probs=7.7
Q ss_pred EEcCcEEEEEeeCC
Q 038352 131 YYDPFVISALSSSD 144 (258)
Q Consensus 131 ~Y~~~~v~v~~y~~ 144 (258)
+|=..++++- ..+
T Consensus 103 ryLkv~i~Le-~~~ 115 (182)
T PRK08455 103 RYLKTSISLE-LSN 115 (182)
T ss_pred eEEEEEEEEE-ECC
Confidence 6666666666 444
No 35
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.07 E-value=14 Score=29.12 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 038352 56 CFWTILVILILAL 68 (258)
Q Consensus 56 ~~~~~~~~~~l~~ 68 (258)
.+|+++|+++|++
T Consensus 3 ~l~~iii~~i~l~ 15 (130)
T PF12273_consen 3 VLFAIIIVAILLF 15 (130)
T ss_pred eeHHHHHHHHHHH
Confidence 3444444444433
No 36
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=48.90 E-value=7 Score=30.46 Aligned_cols=12 Identities=8% Similarity=0.390 Sum_probs=7.8
Q ss_pred HheeeeEeeCCC
Q 038352 74 ATALYVLYRPHR 85 (258)
Q Consensus 74 ~~i~~lv~rP~~ 85 (258)
++++|+++||+.
T Consensus 13 ~~i~yf~iRPQk 24 (113)
T PRK06531 13 LGLIFFMQRQQK 24 (113)
T ss_pred HHHHHheechHH
Confidence 334577899954
No 37
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=48.39 E-value=1.2e+02 Score=24.98 Aligned_cols=67 Identities=7% Similarity=0.115 Sum_probs=30.1
Q ss_pred EEEEEEeCCCceEEEEEcCcEEEEEeeCCe-eeecccCCceeccCCCcEEEEEEEEEcccccChhHHHHHHHh
Q 038352 116 NFTVTSKNPNSHITFYYDPFVISALSSSDV-FLGNGTVPGFFSDKKNQTFLKNVVVSGSIDLDTDSVKSLKSD 187 (258)
Q Consensus 116 ~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~-~Lg~~~vp~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~~d 187 (258)
.+.+.+..-+..+.+.|++.-=+++ -.|. .+..|.+ ++.+.-.--++...=++...+++++++|++.
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlF-rEG~gVVveG~~----~~~g~F~A~evLAKhdekYmPpEv~~al~~~ 146 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLF-REGQGVVVQGTL----EKGNHVLAHEVLAKHDENYTPPEVEKAMQEN 146 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccc-cCCCeEEEEEEE----CCCCEEEEeEEEeCCCCCCCCHHHHHHHHHh
Confidence 3444444445556666665544444 2322 2333333 1111000011112223456888888888654
No 38
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=47.14 E-value=7.4 Score=21.99 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=10.7
Q ss_pred HHHHHHHheeeeEeeCCC
Q 038352 68 LLAAIAATALYVLYRPHR 85 (258)
Q Consensus 68 ~l~~i~~~i~~lv~rP~~ 85 (258)
+.+++++..+|.+++|.+
T Consensus 7 v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 7 VAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 344455556666678853
No 39
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.93 E-value=19 Score=25.59 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhe
Q 038352 58 WTILVILILALLAAIAATA 76 (258)
Q Consensus 58 ~~~~~~~~l~~l~~i~~~i 76 (258)
|+..++++|.+++|++++.
T Consensus 4 ~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 4 WLAILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555666777777763
No 40
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=45.96 E-value=1.4e+02 Score=25.24 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=16.6
Q ss_pred eCCCceEEEeeEEEeeeecc
Q 038352 82 RPHRPEFSVPSLRLHRLNLT 101 (258)
Q Consensus 82 rP~~P~fsV~s~~v~~fnls 101 (258)
.++.|.|.+++++...|+.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46789999999999888653
No 41
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=44.68 E-value=21 Score=31.11 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=6.3
Q ss_pred eEeeCCCceE
Q 038352 79 VLYRPHRPEF 88 (258)
Q Consensus 79 lv~rP~~P~f 88 (258)
-++||+....
T Consensus 181 K~~K~K~~~~ 190 (218)
T PF14283_consen 181 KFYKPKQEEK 190 (218)
T ss_pred EEeccccccc
Confidence 3688876543
No 42
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=42.20 E-value=13 Score=38.46 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 038352 52 RCCCCFWTILVILILALLAAIAA 74 (258)
Q Consensus 52 ~~~c~~~~~~~~~~l~~l~~i~~ 74 (258)
|-++|+.++++++++++++|++.
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVIC 159 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 33444545555555555666554
No 43
>PF15050 SCIMP: SCIMP protein
Probab=41.88 E-value=10 Score=29.82 Aligned_cols=25 Identities=32% Similarity=0.769 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHheeeeEee
Q 038352 57 FWTILVILILALLAAIAATALYVLYR 82 (258)
Q Consensus 57 ~~~~~~~~~l~~l~~i~~~i~~lv~r 82 (258)
+|+++++. ++++-.++++|+|.++|
T Consensus 8 FWiiLAVa-II~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 8 FWIILAVA-IILVSVVLGLILYCVCR 32 (133)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 56665544 33344466778887765
No 44
>PRK00523 hypothetical protein; Provisional
Probab=41.86 E-value=26 Score=25.06 Aligned_cols=20 Identities=15% Similarity=-0.106 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhee
Q 038352 58 WTILVILILALLAAIAATAL 77 (258)
Q Consensus 58 ~~~~~~~~l~~l~~i~~~i~ 77 (258)
|+..++.++++++|++++.+
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444455666555543
No 45
>PF07509 DUF1523: Protein of unknown function (DUF1523); InterPro: IPR011088 This entry is represented by Bacteriophage phiNM3, A0EWY4 from SWISSPROT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are restricted to the Gammaproteobacteria and Epsilonproteobacteria, the function of these proteins is unknown.
Probab=41.66 E-value=1.4e+02 Score=25.07 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=18.7
Q ss_pred EeeCCCceEEEeeEEEeeeeccC
Q 038352 80 LYRPHRPEFSVPSLRLHRLNLTS 102 (258)
Q Consensus 80 v~rP~~P~fsV~s~~v~~fnls~ 102 (258)
..-|+.=...|++..+.+.+++.
T Consensus 23 Y~lP~~dvvrItgtevkR~d~~~ 45 (175)
T PF07509_consen 23 YTLPQYDVVRITGTEVKRMDLDK 45 (175)
T ss_pred ccCCcceEEEEeceEEEEecCCc
Confidence 45688888899999999987665
No 46
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=40.80 E-value=28 Score=30.57 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=8.3
Q ss_pred HHHheeeeEeeC
Q 038352 72 IAATALYVLYRP 83 (258)
Q Consensus 72 i~~~i~~lv~rP 83 (258)
+++++.|+.|||
T Consensus 237 ~~Ia~aW~~yRP 248 (248)
T PF07787_consen 237 LTIALAWLFYRP 248 (248)
T ss_pred HHHHHhheeeCc
Confidence 445567888887
No 47
>PHA02692 hypothetical protein; Provisional
Probab=40.72 E-value=17 Score=25.80 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=6.2
Q ss_pred hhHHHHHHHHH
Q 038352 54 CCCFWTILVIL 64 (258)
Q Consensus 54 ~c~~~~~~~~~ 64 (258)
|+..|..++++
T Consensus 41 ~~~~~~~~ii~ 51 (70)
T PHA02692 41 KGVPWTTVFLI 51 (70)
T ss_pred CCcchHHHHHH
Confidence 34666665555
No 48
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=40.54 E-value=35 Score=27.89 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHheeeeEeeCCCceEEE
Q 038352 64 LILALLAAIAATALYVLYRPHRPEFSV 90 (258)
Q Consensus 64 ~~l~~l~~i~~~i~~lv~rP~~P~fsV 90 (258)
++|++|+..+++.+|-+=+...-.|++
T Consensus 17 ~Ll~lLl~cgiGcvwhwkhr~~~~ftL 43 (158)
T PF11770_consen 17 SLLLLLLLCGIGCVWHWKHRDSTRFTL 43 (158)
T ss_pred HHHHHHHHHhcceEEEeeccCccccch
Confidence 333444445666777665543334443
No 49
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=40.19 E-value=1.1e+02 Score=24.19 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=34.6
Q ss_pred EEEeeEEEeeeeccCCCCCCCceEeEEEEEEEEEeCCCceEEEEEcCcEEEEEeeCCeeeecccC
Q 038352 88 FSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGNGTV 152 (258)
Q Consensus 88 fsV~s~~v~~fnls~~s~~~~~~l~~~~~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~~~v 152 (258)
-.++.+++++..+.... .-.-.+.++.+++|... ....|-.+++++.-.+|..+.+-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~-----~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVP-----DGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeec-----CCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEE
Confidence 35555555544443321 12255788889999886 4677777888886223445554443
No 50
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=39.89 E-value=21 Score=27.68 Aligned_cols=24 Identities=13% Similarity=0.415 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHheeeeEeeC
Q 038352 60 ILVILILALLAAIAATALYVLYRP 83 (258)
Q Consensus 60 ~~~~~~l~~l~~i~~~i~~lv~rP 83 (258)
..++++|++-+++..++++|+++-
T Consensus 65 vglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 65 VGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHheeec
Confidence 344455566667777777777663
No 51
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.70 E-value=20 Score=32.56 Aligned_cols=7 Identities=0% Similarity=-0.040 Sum_probs=2.8
Q ss_pred CccchhH
Q 038352 50 SYRCCCC 56 (258)
Q Consensus 50 ~~~~~c~ 56 (258)
.+||.|+
T Consensus 281 k~~~i~~ 287 (305)
T KOG0809|consen 281 KMKVILM 287 (305)
T ss_pred ceEehHH
Confidence 3444333
No 52
>PRK14758 hypothetical protein; Provisional
Probab=39.64 E-value=40 Score=19.19 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHheeee
Q 038352 62 VILILALLAAIAATALYV 79 (258)
Q Consensus 62 ~~~~l~~l~~i~~~i~~l 79 (258)
++++++++.|+++.-+|+
T Consensus 9 liLivlIlCalia~~fy~ 26 (27)
T PRK14758 9 FILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 445555667777766664
No 53
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=39.53 E-value=24 Score=25.22 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHheee
Q 038352 56 CFWTILVILILALLAAIAATALY 78 (258)
Q Consensus 56 ~~~~~~~~~~l~~l~~i~~~i~~ 78 (258)
.-|..+++.+++++++++...+|
T Consensus 46 ~~~~~~ii~ii~v~ii~~l~flY 68 (72)
T PF12575_consen 46 FNWIILIISIIFVLIIVLLTFLY 68 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333333334
No 54
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=37.53 E-value=14 Score=21.66 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=10.4
Q ss_pred HHHHHHHheeeeEeeCCC
Q 038352 68 LLAAIAATALYVLYRPHR 85 (258)
Q Consensus 68 ~l~~i~~~i~~lv~rP~~ 85 (258)
+.+|+.+..+|.++||.+
T Consensus 11 va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 11 VSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 344455555566688853
No 55
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=37.15 E-value=6.5 Score=22.45 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=10.3
Q ss_pred HHHHHHHheeeeEeeCCC
Q 038352 68 LLAAIAATALYVLYRPHR 85 (258)
Q Consensus 68 ~l~~i~~~i~~lv~rP~~ 85 (258)
+.+++.+..+|.++||.+
T Consensus 6 l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 6 LAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHhCHHh
Confidence 334455555666678753
No 56
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=36.73 E-value=1.2e+02 Score=30.65 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCCC
Q 038352 30 PLRPPYRPQPHARR 43 (258)
Q Consensus 30 ~~~p~~rp~~~~~~ 43 (258)
|++|++.++-.++|
T Consensus 305 ~~~~~~~~~~~~~~ 318 (656)
T PRK06975 305 PPNPPATPPEPPAR 318 (656)
T ss_pred CCCCCCCCcCCccc
Confidence 34445443333333
No 57
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=36.16 E-value=27 Score=33.44 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 038352 55 CCFWTILVILILALLAAIAA 74 (258)
Q Consensus 55 c~~~~~~~~~~l~~l~~i~~ 74 (258)
|..|++.+ ++++..+|+++
T Consensus 81 c~~~sLii-ltL~~~aaIi~ 99 (418)
T cd07912 81 CLKWSLVI-ATLLCCAAIGV 99 (418)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 55554433 33333444443
No 58
>PHA03049 IMV membrane protein; Provisional
Probab=35.66 E-value=15 Score=25.72 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHheeeeEeeC
Q 038352 63 ILILALLAAIAATALYVLYRP 83 (258)
Q Consensus 63 ~~~l~~l~~i~~~i~~lv~rP 83 (258)
++++++-++++++|+|-+|+-
T Consensus 5 ~~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344455566788888888764
No 59
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=35.32 E-value=31 Score=28.35 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=13.7
Q ss_pred HHHHHHheeeeEeeCCCceE
Q 038352 69 LAAIAATALYVLYRPHRPEF 88 (258)
Q Consensus 69 l~~i~~~i~~lv~rP~~P~f 88 (258)
|++++++++|+.+|+++=.|
T Consensus 63 ll~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 63 LLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHhheeEEEecccCcc
Confidence 34566777888888876443
No 60
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=34.96 E-value=47 Score=18.99 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhee
Q 038352 58 WTILVILILALLAAIAATAL 77 (258)
Q Consensus 58 ~~~~~~~~l~~l~~i~~~i~ 77 (258)
|+..+..++.+++++.++++
T Consensus 7 w~~~i~al~~lv~~iTGl~l 26 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444555443
No 61
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=33.63 E-value=44 Score=34.63 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=10.5
Q ss_pred CCCccchhHHHHHHHHHHHHHHHH
Q 038352 48 RRSYRCCCCFWTILVILILALLAA 71 (258)
Q Consensus 48 ~r~~~~~c~~~~~~~~~~l~~l~~ 71 (258)
|+|.||-.++.++.+++++.++.+
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~a 160 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVICA 160 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444444433333333
No 62
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=33.18 E-value=46 Score=29.22 Aligned_cols=10 Identities=20% Similarity=1.049 Sum_probs=5.7
Q ss_pred hHHHHHHHHH
Q 038352 55 CCFWTILVIL 64 (258)
Q Consensus 55 c~~~~~~~~~ 64 (258)
|+.|++++++
T Consensus 228 ~~~~~~i~~v 237 (251)
T PF09753_consen 228 CWTWLMIFVV 237 (251)
T ss_pred HHHHHHHHHH
Confidence 6777654443
No 63
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=32.99 E-value=50 Score=22.41 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.0
Q ss_pred HHHheeeeEeeCC
Q 038352 72 IAATALYVLYRPH 84 (258)
Q Consensus 72 i~~~i~~lv~rP~ 84 (258)
++++++|+.-||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 4566778888874
No 64
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=32.86 E-value=22 Score=36.45 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHheeeeEeeCCCceEE
Q 038352 56 CFWTILVILILALLAAIAATALYVLYRPHRPEFS 89 (258)
Q Consensus 56 ~~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P~fs 89 (258)
.+|++.++++++++.+.+++++|+.+.|..|.+.
T Consensus 5 i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~ 38 (797)
T COG5009 5 IKYLLGILVTLILLGAGALAGLYLYISPDLPDVE 38 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 4566666666666666666777778888888765
No 65
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=32.60 E-value=52 Score=25.02 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 038352 58 WTILVILILALLAA 71 (258)
Q Consensus 58 ~~~~~~~~l~~l~~ 71 (258)
|.+|++++|++|++
T Consensus 22 w~FWlv~~liill~ 35 (102)
T PF11669_consen 22 WYFWLVWVLIILLS 35 (102)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544444433
No 66
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=32.48 E-value=28 Score=26.76 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH-HHHheeeeEe
Q 038352 58 WTILVILILALLAA-IAATALYVLY 81 (258)
Q Consensus 58 ~~~~~~~~l~~l~~-i~~~i~~lv~ 81 (258)
|.+.++++|++|+. ++-++.|...
T Consensus 1 w~Ll~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 1 WLLLGILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333 3444456543
No 67
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=31.59 E-value=19 Score=25.38 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHheeeeEeeC
Q 038352 63 ILILALLAAIAATALYVLYRP 83 (258)
Q Consensus 63 ~~~l~~l~~i~~~i~~lv~rP 83 (258)
++++++-++++++|+|-+|+-
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334445566778888888764
No 68
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=31.54 E-value=30 Score=28.57 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=9.8
Q ss_pred HHHHHHheeeeEeeC
Q 038352 69 LAAIAATALYVLYRP 83 (258)
Q Consensus 69 l~~i~~~i~~lv~rP 83 (258)
|+++++.++|+.+||
T Consensus 14 l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 14 LLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHhhhhccCC
Confidence 333333778888998
No 69
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=31.47 E-value=18 Score=32.97 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=11.0
Q ss_pred HHHHHHHHHHheeeeEee
Q 038352 65 ILALLAAIAATALYVLYR 82 (258)
Q Consensus 65 ~l~~l~~i~~~i~~lv~r 82 (258)
+.++++.++.+|+||+||
T Consensus 263 iaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444456777888865
No 70
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=31.39 E-value=55 Score=20.56 Aligned_cols=24 Identities=21% Similarity=0.677 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHheeeeEeeCC
Q 038352 56 CFWTILVILILALLAAIAATALYVLYRPH 84 (258)
Q Consensus 56 ~~~~~~~~~~l~~l~~i~~~i~~lv~rP~ 84 (258)
..|++.++ ++-+++.++|++++.+
T Consensus 23 ~~W~~~i~-----~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 23 ILWLIVIL-----FFPIIGPILYLIFGRK 46 (46)
T ss_pred hHHHHHHH-----HHHHHHHhheEEEeCC
Confidence 66665443 3456778889888753
No 71
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=30.07 E-value=61 Score=30.80 Aligned_cols=13 Identities=38% Similarity=1.454 Sum_probs=7.9
Q ss_pred cchhHHHHHHHHH
Q 038352 52 RCCCCFWTILVIL 64 (258)
Q Consensus 52 ~~~c~~~~~~~~~ 64 (258)
.|||..|.+.++.
T Consensus 58 ~~~c~~~~~~ia~ 70 (406)
T PF04906_consen 58 RCCCLTWSLVIAT 70 (406)
T ss_pred CCcchHHHHHHHH
Confidence 4567888765433
No 72
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=30.03 E-value=28 Score=22.74 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=7.1
Q ss_pred HHHheeeeEeeCC
Q 038352 72 IAATALYVLYRPH 84 (258)
Q Consensus 72 i~~~i~~lv~rP~ 84 (258)
+.+++++.+|+|+
T Consensus 22 ~Figiv~wa~~p~ 34 (48)
T cd01324 22 FFLGVVVWAFRPG 34 (48)
T ss_pred HHHHHHHHHhCCC
Confidence 3444445567775
No 73
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.75 E-value=30 Score=32.25 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHheeeeEee
Q 038352 57 FWTILVILILALLAAIAATALYVLYR 82 (258)
Q Consensus 57 ~~~~~~~~~l~~l~~i~~~i~~lv~r 82 (258)
.++++.||+|+++=.|+.+|+|+++.
T Consensus 226 ~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 226 GGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555556666666677777887776
No 74
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=29.43 E-value=20 Score=23.23 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=7.0
Q ss_pred HHheeeeEeeCCC
Q 038352 73 AATALYVLYRPHR 85 (258)
Q Consensus 73 ~~~i~~lv~rP~~ 85 (258)
.+++++-+|+|+.
T Consensus 22 F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 22 FIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHcccc
Confidence 3344445668763
No 75
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.23 E-value=1.3e+02 Score=23.34 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=11.1
Q ss_pred EEEEEEEEEeCCCce
Q 038352 113 TLLNFTVTSKNPNSH 127 (258)
Q Consensus 113 ~~~~ltl~a~NPN~k 127 (258)
...+.++.+-|-|.+
T Consensus 52 ~~y~y~i~ayn~~Gk 66 (113)
T COG5294 52 PGYEYTITAYNKNGK 66 (113)
T ss_pred ccceeeehhhccCCc
Confidence 356688888888873
No 76
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=28.65 E-value=1.9e+02 Score=24.24 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=5.7
Q ss_pred eeCCCceEEEe
Q 038352 81 YRPHRPEFSVP 91 (258)
Q Consensus 81 ~rP~~P~fsV~ 91 (258)
+.+..|..+|.
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 45555655543
No 77
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=28.39 E-value=1.3e+02 Score=23.26 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=18.4
Q ss_pred eEEEEEEEEEeCCCceEEEEEcCcEEE
Q 038352 112 ATLLNFTVTSKNPNSHITFYYDPFVIS 138 (258)
Q Consensus 112 ~~~~~ltl~a~NPN~ki~i~Y~~~~v~ 138 (258)
..++..++.+.||.. +++..+...++
T Consensus 99 g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 99 GINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred cEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 366788888899985 77766555443
No 78
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=28.29 E-value=1.9e+02 Score=26.20 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=23.3
Q ss_pred ceEEEeeEEEeeeeccCC----CCCCCceEeEEEEEEEEEeCCC
Q 038352 86 PEFSVPSLRLHRLNLTSS----ADSSTNHVATLLNFTVTSKNPN 125 (258)
Q Consensus 86 P~fsV~s~~v~~fnls~~----s~~~~~~l~~~~~ltl~a~NPN 125 (258)
=+|+..++++..||+..- .|+ .+++.+-.+..+++||-
T Consensus 90 Dt~~kVDLRt~sfnVPpqeIltkDs--vtvsVdAvVyyri~dpi 131 (288)
T KOG2621|consen 90 DTFRKVDLRTQSFNVPPQEILTKDS--VTISVDAVVYYRISDPI 131 (288)
T ss_pred ceeeeeeeeEEeecCCHHHHhcccc--eEEEeceEEEEEecCHH
Confidence 367888899998987541 122 24555555555666664
No 79
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=28.01 E-value=31 Score=21.38 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.9
Q ss_pred HHHheeeeEe
Q 038352 72 IAATALYVLY 81 (258)
Q Consensus 72 i~~~i~~lv~ 81 (258)
|..+|+|+++
T Consensus 23 imliif~f~l 32 (43)
T PF11395_consen 23 IMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHH
Confidence 3344556554
No 80
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=26.80 E-value=5.8e+02 Score=24.55 Aligned_cols=19 Identities=5% Similarity=-0.043 Sum_probs=14.8
Q ss_pred ceeccCCCcEEEEEEEEEc
Q 038352 154 GFFSDKKNQTFLKNVVVSG 172 (258)
Q Consensus 154 ~F~q~~~~tt~v~~~l~~~ 172 (258)
++..++++...+.+.+...
T Consensus 382 ~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 382 PIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred eEEECCCCEEEEEEEEEec
Confidence 6888888888888777665
No 81
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.36 E-value=25 Score=27.74 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=7.4
Q ss_pred HHHHHheeeeEeeC-CCceEEEee
Q 038352 70 AAIAATALYVLYRP-HRPEFSVPS 92 (258)
Q Consensus 70 ~~i~~~i~~lv~rP-~~P~fsV~s 92 (258)
+|++++|+|++-|= |++...++.
T Consensus 78 Ig~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHhccCCCCCCC
Confidence 34555666666433 455555544
No 82
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=3.4e+02 Score=22.30 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=28.3
Q ss_pred eCCCceEEEEEcCcEEEEEeeCCe-eeecccCCceeccCCCcEEEEEEEE-EcccccChhHHHHHHHh
Q 038352 122 KNPNSHITFYYDPFVISALSSSDV-FLGNGTVPGFFSDKKNQTFLKNVVV-SGSIDLDTDSVKSLKSD 187 (258)
Q Consensus 122 ~NPN~ki~i~Y~~~~v~v~~y~~~-~Lg~~~vp~F~q~~~~tt~v~~~l~-~~~~~l~~~~~~~L~~d 187 (258)
.--|.++.+.|+.+-=+++ =.|. -++.|.+ .++ ++-.-+-.|. =+....++++.++|+..
T Consensus 79 tD~~~~v~V~Y~GiLPDLF-REGQgVVa~G~~---~~~--~~f~A~~vLAKHdEnY~P~ev~~~mk~~ 140 (153)
T COG2332 79 TDGNKSVTVSYEGILPDLF-REGQGVVAEGQL---QGG--GVFEAKEVLAKHDENYTPPEVAKAMKKN 140 (153)
T ss_pred ecCCceEEEEEeccCchhh-hcCCeEEEEEEe---cCC--CEEEeeehhhcCCcccCCHHHHHHhhhc
Confidence 3556667788876655555 3332 2333333 111 1111111121 23335777777777653
No 83
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=26.01 E-value=71 Score=28.37 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=22.1
Q ss_pred HHHHheeeeEeeCCCceEEEeeEEEeeee
Q 038352 71 AIAATALYVLYRPHRPEFSVPSLRLHRLN 99 (258)
Q Consensus 71 ~i~~~i~~lv~rP~~P~fsV~s~~v~~fn 99 (258)
++.++++|...-++.|-|.+..+.|++=+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~ 71 (269)
T COG1589 43 LLVLVVLWVLILLSLPYFPIRKVSVSGNN 71 (269)
T ss_pred HHHHHHHheehhhhcCCccceEEEEecCc
Confidence 34455667777888899999999998743
No 84
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=25.62 E-value=73 Score=24.17 Aligned_cols=20 Identities=5% Similarity=0.255 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHheeeeE
Q 038352 61 LVILILALLAAIAATALYVL 80 (258)
Q Consensus 61 ~~~~~l~~l~~i~~~i~~lv 80 (258)
+.|+..++.+|+.+++++.+
T Consensus 23 ItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 23 ITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555566666665544
No 85
>PF14828 Amnionless: Amnionless
Probab=24.27 E-value=40 Score=32.42 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=11.9
Q ss_pred HHHHHHHheeeeEeeCCCceE
Q 038352 68 LLAAIAATALYVLYRPHRPEF 88 (258)
Q Consensus 68 ~l~~i~~~i~~lv~rP~~P~f 88 (258)
++++++++++|+.+.|+.|.+
T Consensus 349 llv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 349 LLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred HHHHHHHHhheEEeccccccc
Confidence 344455555566665666655
No 86
>PTZ00116 signal peptidase; Provisional
Probab=24.15 E-value=2.9e+02 Score=23.42 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=22.2
Q ss_pred CCCceEEEeeEEEeeeeccCC--CCCCCceEeEEEEEEEEE-eCCCceEEEEE
Q 038352 83 PHRPEFSVPSLRLHRLNLTSS--ADSSTNHVATLLNFTVTS-KNPNSHITFYY 132 (258)
Q Consensus 83 P~~P~fsV~s~~v~~fnls~~--s~~~~~~l~~~~~ltl~a-~NPN~ki~i~Y 132 (258)
...|..+|+=-.|.+|.+.+. .|- ..+..+++..|+- -|=|.|--+-|
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~--a~i~fdl~~DL~~lfnWNtKqlFvy 86 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDE--AVLSLDLSYDMSKAFNWNLKQLFLY 86 (185)
T ss_pred CCCceeeEEEeecccccccCCCCcee--EEEEEeeccCchhcCCccccEEEEE
Confidence 455656666555566654332 221 1333333333332 25565554444
No 87
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=24.09 E-value=1.2e+02 Score=18.71 Aligned_cols=12 Identities=8% Similarity=0.678 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 038352 58 WTILVILILALL 69 (258)
Q Consensus 58 ~~~~~~~~l~~l 69 (258)
|++..+..++++
T Consensus 16 Wi~F~l~mi~vF 27 (38)
T PF09125_consen 16 WIAFALAMILVF 27 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 544444433333
No 88
>KOG4298 consensus CAP-binding protein complex interacting protein 2 [RNA processing and modification]
Probab=23.81 E-value=1.2e+02 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHheeeeEeeC-CCc
Q 038352 55 CCFWTILVILILALLAAIAATALYVLYRP-HRP 86 (258)
Q Consensus 55 c~~~~~~~~~~l~~l~~i~~~i~~lv~rP-~~P 86 (258)
=+.|.+..++.++++++=+++++|+-|-| ..|
T Consensus 147 elaW~FST~iGllLFL~Ei~llcwvKF~~v~~P 179 (245)
T KOG4298|consen 147 ELAWAFSTVIGLLLFLAEIVLLCWVKFLPVGYP 179 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeeecCCCc
Confidence 47899998888888888888999988777 444
No 89
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.62 E-value=56 Score=23.70 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=5.1
Q ss_pred HHheeeeEeeC
Q 038352 73 AATALYVLYRP 83 (258)
Q Consensus 73 ~~~i~~lv~rP 83 (258)
++..+|....|
T Consensus 20 ~~~~~~~~~~~ 30 (85)
T PF11337_consen 20 IGIYYFFNGNP 30 (85)
T ss_pred HHHHHhhcCch
Confidence 33444444555
No 90
>PRK14762 membrane protein; Provisional
Probab=23.60 E-value=1.5e+02 Score=16.78 Aligned_cols=10 Identities=30% Similarity=1.155 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 038352 56 CFWTILVILI 65 (258)
Q Consensus 56 ~~~~~~~~~~ 65 (258)
+.|.+.++++
T Consensus 4 ~lw~i~iifl 13 (27)
T PRK14762 4 ILWAVLIIFL 13 (27)
T ss_pred HHHHHHHHHH
Confidence 4566555544
No 91
>COG3671 Predicted membrane protein [Function unknown]
Probab=23.52 E-value=31 Score=27.11 Aligned_cols=6 Identities=33% Similarity=1.115 Sum_probs=2.8
Q ss_pred eeeEee
Q 038352 77 LYVLYR 82 (258)
Q Consensus 77 ~~lv~r 82 (258)
+|.++|
T Consensus 98 vW~i~R 103 (125)
T COG3671 98 VWYIYR 103 (125)
T ss_pred HHHHHH
Confidence 454444
No 92
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.34 E-value=84 Score=27.61 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=6.0
Q ss_pred HHHHHHheeeeEee
Q 038352 69 LAAIAATALYVLYR 82 (258)
Q Consensus 69 l~~i~~~i~~lv~r 82 (258)
+++++++++|++.|
T Consensus 249 ~~~~~~~~~~~~~R 262 (262)
T PF14257_consen 249 LILIIGLLVRFVRR 262 (262)
T ss_pred HHHHHHHHHheEeC
Confidence 33344444444443
No 93
>PF14979 TMEM52: Transmembrane 52
Probab=23.10 E-value=93 Score=25.41 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhee
Q 038352 55 CCFWTILVILILALLAAIAATAL 77 (258)
Q Consensus 55 c~~~~~~~~~~l~~l~~i~~~i~ 77 (258)
.-+|+++++++|++|-|+.+.-+
T Consensus 20 WyIwLill~~~llLLCG~ta~C~ 42 (154)
T PF14979_consen 20 WYIWLILLIGFLLLLCGLTASCV 42 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766667777777776654
No 94
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.68 E-value=54 Score=28.52 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=2.5
Q ss_pred HHHHHh
Q 038352 182 KSLKSD 187 (258)
Q Consensus 182 ~~L~~d 187 (258)
.+|...
T Consensus 153 ~Em~~A 158 (217)
T PF07423_consen 153 NEMLKA 158 (217)
T ss_pred HHHHHH
Confidence 344443
No 95
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=22.54 E-value=85 Score=27.29 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=12.0
Q ss_pred HHheeeeEeeCCCceEEEe
Q 038352 73 AATALYVLYRPHRPEFSVP 91 (258)
Q Consensus 73 ~~~i~~lv~rP~~P~fsV~ 91 (258)
+++-.|.+|+=..|+=.-.
T Consensus 172 ~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred hhcceEEEEEEeccccccc
Confidence 3334567888888875543
No 96
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=22.28 E-value=1.1e+02 Score=23.73 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=14.1
Q ss_pred EEEEEEEeCCCc----eEEEEEcC--cEEEEE
Q 038352 115 LNFTVTSKNPNS----HITFYYDP--FVISAL 140 (258)
Q Consensus 115 ~~ltl~a~NPN~----ki~i~Y~~--~~v~v~ 140 (258)
.--++-+.|||+ .+.++|++ ..|.+.
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~ 82 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVA 82 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEE
Confidence 444566778773 34466652 344555
No 97
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=22.10 E-value=1.3e+02 Score=22.76 Aligned_cols=9 Identities=22% Similarity=0.545 Sum_probs=4.0
Q ss_pred heeee-EeeC
Q 038352 75 TALYV-LYRP 83 (258)
Q Consensus 75 ~i~~l-v~rP 83 (258)
+|.|+ ++|=
T Consensus 80 ~IyYFVILRe 89 (101)
T PF06024_consen 80 AIYYFVILRE 89 (101)
T ss_pred hheEEEEEec
Confidence 34454 4543
No 98
>PF02476 US2: US2 family; InterPro: IPR003485 This is a family of unique short (US) region proteins from Herpesviridae strains. The US2 family has no known function.
Probab=21.90 E-value=77 Score=25.18 Aligned_cols=7 Identities=43% Similarity=1.004 Sum_probs=3.3
Q ss_pred CCccchh
Q 038352 49 RSYRCCC 55 (258)
Q Consensus 49 r~~~~~c 55 (258)
|+.||+|
T Consensus 120 r~~C~~~ 126 (126)
T PF02476_consen 120 RRPCCIC 126 (126)
T ss_pred CCCcccC
Confidence 4455544
No 99
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=45 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHheeeeEeeC
Q 038352 56 CFWTILVILILALLAAIAATALYVLYRP 83 (258)
Q Consensus 56 ~~~~~~~~~~l~~l~~i~~~i~~lv~rP 83 (258)
+.|+..++++++.+++.+++.+|....|
T Consensus 6 ~~~i~ii~viflai~~s~~~~~~~s~~P 33 (161)
T COG5353 6 LIIIIIILVIFLAIILSIALFFWKSMKP 33 (161)
T ss_pred eeeehhHHHHHHHHHHHHHHHHhHhcCc
Confidence 3455544444455555667777877887
No 100
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=21.65 E-value=1.1e+02 Score=21.90 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=22.6
Q ss_pred cchhHHHHHHHHHH----------HHHHHHHHHheeeeEeeCC
Q 038352 52 RCCCCFWTILVILI----------LALLAAIAATALYVLYRPH 84 (258)
Q Consensus 52 ~~~c~~~~~~~~~~----------l~~l~~i~~~i~~lv~rP~ 84 (258)
.+.|++|+.-.+++ +.++++++-+++|+.|.++
T Consensus 43 ~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~y~~~ 85 (87)
T PF03083_consen 43 FFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYIYPSK 85 (87)
T ss_pred hhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEEeCCC
Confidence 45678887765543 5566677777778888775
No 101
>PRK11901 hypothetical protein; Reviewed
Probab=21.57 E-value=1.8e+02 Score=26.90 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=4.4
Q ss_pred eeeeccCC
Q 038352 96 HRLNLTSS 103 (258)
Q Consensus 96 ~~fnls~~ 103 (258)
.+++|+.+
T Consensus 77 knIdLS~s 84 (327)
T PRK11901 77 KNIDLSGS 84 (327)
T ss_pred cceecCCC
Confidence 45666544
No 102
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.75 E-value=4.8e+02 Score=21.45 Aligned_cols=16 Identities=0% Similarity=0.050 Sum_probs=10.7
Q ss_pred cccccChhHHHHHHHh
Q 038352 172 GSIDLDTDSVKSLKSD 187 (258)
Q Consensus 172 ~~~~l~~~~~~~L~~d 187 (258)
++...++++.++|++.
T Consensus 124 de~YmP~Ev~~al~~~ 139 (155)
T PRK13159 124 DETYMPKELKDAMAEG 139 (155)
T ss_pred CCcCCCHHHHHHHHhc
Confidence 3346788888777654
No 103
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=20.25 E-value=87 Score=29.60 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=13.7
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHh
Q 038352 47 PRRSYRCCCCFWTILVILILALLAAIAAT 75 (258)
Q Consensus 47 ~~r~~~~~c~~~~~~~~~~l~~l~~i~~~ 75 (258)
+.....++|+..++++||++.+++|.+++
T Consensus 297 ~~~~r~~~c~~~~i~~lL~ig~~~gFv~A 325 (387)
T PF12751_consen 297 SWFSRFASCIYLSILLLLVIGFAIGFVFA 325 (387)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 44443334444444445555555554444
No 104
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.19 E-value=38 Score=24.26 Aligned_cols=7 Identities=0% Similarity=-0.083 Sum_probs=2.5
Q ss_pred HHHHHhe
Q 038352 70 AAIAATA 76 (258)
Q Consensus 70 ~~i~~~i 76 (258)
+|++.++
T Consensus 68 ~Gl~lgi 74 (82)
T PF13807_consen 68 LGLILGI 74 (82)
T ss_pred HHHHHHH
Confidence 3333333
Done!