Query 038352
Match_columns 258
No_of_seqs 181 out of 858
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.1 1.8E-05 6.1E-10 65.2 9.7 102 84-202 43-145 (174)
2 1xo8_A AT1G01470; structural g 98.0 9.4E-06 3.2E-10 65.4 5.9 104 84-204 20-124 (151)
3 3but_A Uncharacterized protein 97.9 0.00019 6.4E-09 56.8 11.9 72 112-185 17-89 (136)
4 3hd7_B Syntaxin-1A; membrane p 51.4 12 0.0004 27.7 3.2 6 66-71 100-105 (109)
5 2knc_B Integrin beta-3; transm 31.4 26 0.00089 24.4 2.2 21 59-79 13-33 (79)
6 1wlp_A Cytochrome B-245 light 27.8 7.9 0.00027 21.1 -0.8 15 29-43 8-22 (26)
7 2lk9_A Bone marrow stromal ant 26.3 53 0.0018 19.0 2.5 16 53-68 3-18 (35)
8 2k9j_B Integrin beta-3; transm 20.5 62 0.0021 19.7 2.2 17 62-78 15-31 (43)
9 3hd7_A Vesicle-associated memb 19.0 81 0.0028 22.2 2.9 22 57-78 70-91 (91)
10 1afo_A Glycophorin A; integral 18.8 28 0.00094 21.0 0.2 21 61-81 12-32 (40)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.09 E-value=1.8e-05 Score=65.23 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=78.1
Q ss_pred CCceEEEeeEEEeeeeccCCCCCCCceEeEEEEEEEEEeCCCceEEEEEcCcEEEEEeeCCeeeecccCC-ceeccCCCc
Q 038352 84 HRPEFSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGNGTVP-GFFSDKKNQ 162 (258)
Q Consensus 84 ~~P~fsV~s~~v~~fnls~~s~~~~~~l~~~~~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~~~vp-~F~q~~~~t 162 (258)
+.|+++++++++.+++.. ..+|.+.++++|||. ..+.+.+++.++. -+|..|++|..+ ++..+++++
T Consensus 43 ~~PeV~v~~v~~~~~~l~----------~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~-vnG~~lasG~s~~~~tIpa~g~ 110 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD----------GVDYHAKVSVKNPYS-QSIPICQISYILK-SATRTIASGTIPDPGSLVGSGT 110 (174)
T ss_dssp CCCEEEEEEEEEEEECSS----------SEEEEEEEEEEECSS-SCCBCCSEEEEEE-ESSSCEEEEEESCCCBCCSSEE
T ss_pred CCCEEEEEEeEEeccccc----------eEEEEEEEEEECCCC-CCccccceEEEEE-ECCEEEEEEecCCCceECCCCc
Confidence 679999999999876443 277999999999997 8999999999999 899999999986 489999999
Q ss_pred EEEEEEEEEcccccChhHHHHHHHhhhcCCeEEEEEEEEE
Q 038352 163 TFLKNVVVSGSIDLDTDSVKSLKSDLKKKNGVSLKIKLDT 202 (258)
Q Consensus 163 t~v~~~l~~~~~~l~~~~~~~L~~d~~s~g~v~l~v~v~~ 202 (258)
+.+.+.++.... ...++..++...+.++.++++..
T Consensus 111 ~~v~Vpv~v~~~-----~l~~~~~~l~~~~~i~Y~L~g~L 145 (174)
T 1yyc_A 111 TVLDVPVKVAYS-----IAVSLMKDMCTDWDIDYQLDIGL 145 (174)
T ss_dssp EEEEEEEEESHH-----HHHHTCCCCCSSEEECEEEEEEE
T ss_pred EEEEEEEEEEHH-----HHHHHHHhcCCCCccceEEEEEE
Confidence 999999987642 11223344443344555555543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.97 E-value=9.4e-06 Score=65.40 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=77.9
Q ss_pred CCceEEEeeEEEeeeeccCCCCCCCceEeEEEEEEEEEeCCCceEEEEEcCcEEEEEeeCCeeeecccCC-ceeccCCCc
Q 038352 84 HRPEFSVPSLRLHRLNLTSSADSSTNHVATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGNGTVP-GFFSDKKNQ 162 (258)
Q Consensus 84 ~~P~fsV~s~~v~~fnls~~s~~~~~~l~~~~~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~~~vp-~F~q~~~~t 162 (258)
+.|++++.++++.+++. ...+|.+.++++|||. ..+.+.+++.++. -+|..+++|..+ ++..+++++
T Consensus 20 ~~P~v~v~~v~~~~~~~----------~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~-vng~~lasG~~~~~~~ipa~g~ 87 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR----------DSVEYLAKVSVTNPYS-HSIPICEISFTFH-SAGREIGKGKIPDPGSLKAKDM 87 (151)
T ss_dssp CSCCCBCSEEEECCCTT----------TEECEEEEEEEECSSS-SCCCCEEEEEEEE-SSSSCEEEEEEEECCCCSSSSE
T ss_pred CCCEEEEEEeEEeccCc----------ceeEEEEEEEEECCCC-CCcccccEEEEEE-ECCEEEEEEecCCCcEECCCCc
Confidence 57999999998875533 2367999999999997 7899999999998 899999999986 589999999
Q ss_pred EEEEEEEEEcccccChhHHHHHHHhhhcCCeEEEEEEEEEEE
Q 038352 163 TFLKNVVVSGSIDLDTDSVKSLKSDLKKKNGVSLKIKLDTKV 204 (258)
Q Consensus 163 t~v~~~l~~~~~~l~~~~~~~L~~d~~s~g~v~l~v~v~~~v 204 (258)
+.+.+.++.+...+ .++..++...+.++.+++++..+
T Consensus 88 ~~v~vpv~v~~~~l-----~~~~~~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 88 TALDIPVVVPYSIL-----FNLARDVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp EEEEECCCEEHHHH-----HHHHHHHHHHSEEEEEEEEEEEE
T ss_pred EEEEEEEEEEHHHH-----HHHHHhcccCCcccEEEEEEEEE
Confidence 99998887764222 22333333335666666655543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.89 E-value=0.00019 Score=56.76 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=61.8
Q ss_pred eEEEEEEEEEeCCCceEEEEEcCcEEEEEeeCCeeeeccc-CCceeccCCCcEEEEEEEEEcccccChhHHHHHH
Q 038352 112 ATLLNFTVTSKNPNSHITFYYDPFVISALSSSDVFLGNGT-VPGFFSDKKNQTFLKNVVVSGSIDLDTDSVKSLK 185 (258)
Q Consensus 112 ~~~~~ltl~a~NPN~ki~i~Y~~~~v~v~~y~~~~Lg~~~-vp~F~q~~~~tt~v~~~l~~~~~~l~~~~~~~L~ 185 (258)
.+.|.+.+++.|||. +.+.+++++.++. .+|..||+|. ...+..++.+.+.+.+.+..+...+.+...+.|+
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~-lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ 89 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIE-MNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA 89 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEE-ETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEE-ECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence 478999999999996 8999999999999 8999999997 5789999999999999999887667665555554
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=51.35 E-value=12 Score=27.70 Aligned_cols=6 Identities=17% Similarity=0.086 Sum_probs=2.3
Q ss_pred HHHHHH
Q 038352 66 LALLAA 71 (258)
Q Consensus 66 l~~l~~ 71 (258)
+++++|
T Consensus 100 ~~~~~~ 105 (109)
T 3hd7_B 100 IASTIG 105 (109)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 333443
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.44 E-value=26 Score=24.38 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHheeee
Q 038352 59 TILVILILALLAAIAATALYV 79 (258)
Q Consensus 59 ~~~~~~~l~~l~~i~~~i~~l 79 (258)
++..+++.++|+|++++++|-
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333444455667777766663
No 6
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=27.77 E-value=7.9 Score=21.11 Aligned_cols=15 Identities=53% Similarity=1.068 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCC
Q 038352 29 PPLRPPYRPQPHARR 43 (258)
Q Consensus 29 ~~~~p~~rp~~~~~~ 43 (258)
.|.+|+.||+++.|+
T Consensus 8 pP~nPPPRpPae~r~ 22 (26)
T 1wlp_A 8 PPSNPPPRPPAEARK 22 (26)
T ss_dssp CCSSCCCCCCHHHHH
T ss_pred CCCCcCCCCchHHcc
Confidence 345677777765443
No 7
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=26.30 E-value=53 Score=19.02 Aligned_cols=16 Identities=6% Similarity=0.116 Sum_probs=7.0
Q ss_pred chhHHHHHHHHHHHHH
Q 038352 53 CCCCFWTILVILILAL 68 (258)
Q Consensus 53 ~~c~~~~~~~~~~l~~ 68 (258)
|.-..|+-.++++.++
T Consensus 3 cKL~lg~Gvl~LLviV 18 (35)
T 2lk9_A 3 SKLLLGIGILVLLIIV 18 (35)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred ceeeecccHHHHHHHH
Confidence 4556665554444333
No 8
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=20.55 E-value=62 Score=19.68 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHheee
Q 038352 62 VILILALLAAIAATALY 78 (258)
Q Consensus 62 ~~~~l~~l~~i~~~i~~ 78 (258)
.++..++++|++.+++|
T Consensus 15 gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444566777766665
No 9
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=18.99 E-value=81 Score=22.24 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHheee
Q 038352 57 FWTILVILILALLAAIAATALY 78 (258)
Q Consensus 57 ~~~~~~~~~l~~l~~i~~~i~~ 78 (258)
.+++++++++++++.+++.+.|
T Consensus 70 ~~iii~~iv~~il~ii~~~~~~ 91 (91)
T 3hd7_A 70 MMIILGVICAIILIIIIVYFST 91 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=18.77 E-value=28 Score=20.96 Aligned_cols=21 Identities=24% Similarity=0.630 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHheeeeEe
Q 038352 61 LVILILALLAAIAATALYVLY 81 (258)
Q Consensus 61 ~~~~~l~~l~~i~~~i~~lv~ 81 (258)
.++.++.+++|+++.|+++.|
T Consensus 12 i~lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Done!