BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038353
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 76 GKIHGVITANPANVEHILKTNFENYPKGQRFV----TLLEDFLGR--GIFNSDGELWKVQ 129
G + V +P +V + K+ P +RF+ + R G+ WK
Sbjct: 51 GNVESVYVIDPEDVALLFKSE---GPNPERFLIPPWVAYHQYYQRPIGVLLKKSAAWKKD 107
Query: 130 RKTASYE-FNTKSLRNFV--MDSVRFETLSRLVPILTKASRTGLALDLQDILERYAFDNI 186
R + E ++ +NF+ +D+V + +S L + KA + D+ D L R+AF++I
Sbjct: 108 RVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESI 167
Query: 187 CKVAFNFDPGCL 198
V F G L
Sbjct: 168 TNVIFGERQGML 179
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 76 GKIHGVITANPANVEHILKTNFENYPKGQRFV----TLLEDFLGR--GIFNSDGELWKVQ 129
G + V +P +V + K+ P +RF+ + R G+ WK
Sbjct: 54 GNVESVYVIDPEDVALLFKSE---GPNPERFLIPPWVAYHQYYQRPIGVLLKKSAAWKKD 110
Query: 130 RKTASYE-FNTKSLRNFV--MDSVRFETLSRLVPILTKASRTGLALDLQDILERYAFDNI 186
R + E ++ +NF+ +D+V + +S L + KA + D+ D L R+AF++I
Sbjct: 111 RVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESI 170
Query: 187 CKVAFNFDPGCL 198
V F G L
Sbjct: 171 TNVIFGERQGML 182
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 112 DFLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTG 169
++L G +++ +LW VQ++ K LRN S R +LS IL+ SR+G
Sbjct: 80 NYLAVGTSSAEVQLWDVQQQ--------KRLRNMTSHSARVGSLSWNSYILSSGSRSG 129
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 112 DFLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTG 169
++L G +++ +LW VQ++ K LRN S R +LS IL+ SR+G
Sbjct: 171 NYLAVGTSSAEVQLWDVQQQ--------KRLRNMTSHSARVGSLSWNSYILSSGSRSG 220
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 112 DFLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTG 169
++L G +++ +LW VQ++ K LRN S R +LS IL+ SR+G
Sbjct: 160 NYLAVGTSSAEVQLWDVQQQ--------KRLRNMTSHSARVGSLSWNSYILSSGSRSG 209
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 113 FLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLAL 172
F+ I ++ E WK R S F + L+ V ++ + LV L + + TG +
Sbjct: 93 FMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDV--LVRNLRREAETGKPV 150
Query: 173 DLQDILERYAFDNICKVAF 191
L+D+ Y+ D I +F
Sbjct: 151 TLKDVFGAYSMDVITSTSF 169
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 113 FLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLAL 172
F+ I ++ E WK R S F + L+ V ++ + LV L + + TG +
Sbjct: 91 FMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDV--LVRNLRREAETGKPV 148
Query: 173 DLQDILERYAFDNICKVAF 191
L+D+ Y+ D I +F
Sbjct: 149 TLKDVFGAYSMDVITSTSF 167
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 113 FLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLAL 172
F+ I ++ E WK R S F + L+ V ++ + LV L + + TG +
Sbjct: 92 FMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDV--LVRNLRREAETGKPV 149
Query: 173 DLQDILERYAFDNICKVAF 191
L+D+ Y+ D I +F
Sbjct: 150 TLKDVFGAYSMDVITSTSF 168
>pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
Length = 306
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 159 VPILTKASRTGLALDLQDILERYAFDNICKVAFNFDPGCLGGDGTAGSEFMRAFEDAATL 218
+P++ K SR G ++ + ++ A + ++AF D L +G EF A L
Sbjct: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198
Query: 219 SSGRFR 224
S R +
Sbjct: 199 PSIRIQ 204
>pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 159 VPILTKASRTGLALDLQDILERYAFDNICKVAFNFDPGCLGGDGTAGSEFMRAFEDAATL 218
+P++ K SR G ++ + ++ A + ++AF D L +G EF A L
Sbjct: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198
Query: 219 SSGRFR 224
S R +
Sbjct: 199 PSIRIQ 204
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 126 WKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLALDLQDILERYAFDN 185
W + K + E N + RN DS +F+ R +L+K GL + D + N
Sbjct: 296 WDAREKGQALEANWQGQRNLFKDSPKFDEFER---VLSKELPVGLESAINDYIAS-QLSN 351
Query: 186 ICKVA 190
KVA
Sbjct: 352 PVKVA 356
>pdb|4EZI|A Chain A, Crystal Structure Of A Hypothetical Protein (Lpg1103) From
Legionella Pneumophila Subsp. Pneumophila Str.
Philadelphia 1 At 1.15 A Resolution
Length = 377
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 60 EILKHCPTGTAIFYRPGKIHGVITANPANVEHILKTNFENY 100
EIL+ P + ++P +G+I+ N E ILK NF +Y
Sbjct: 263 EILQALPQDPLLIFQPKFSNGIISKTDRNTE-ILKINFNHY 302
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 70 AIFYRPGKIHGVITANPANVEHILKTNFENYPKGQRFVTLLEDFLGRGIFNSDGELWKVQ 129
A+ + P + G + A E K F+ L GRG+ GE WK
Sbjct: 44 ALIFDPEGVEGALLA-----EGTTKATFQ--------YRALSRLTGRGLLTDWGESWKEA 90
Query: 130 RKTASYEFNTKSLRNF 145
RK F K++R +
Sbjct: 91 RKALKDPFLPKNVRGY 106
>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
Length = 389
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 70 AIFYRPGKIHGVITANPANVEHILKTNFENYPKGQRFVTLLEDFLGRGIFNSDGELWKVQ 129
A+ + P + G + A E K F+ L GRG+ G+ WK
Sbjct: 44 ALIFDPEGVEGALLA-----EGTTKATFQ--------YRALSRLTGRGLLTDWGKSWKEA 90
Query: 130 RKTASYEFNTKSLRNF 145
RK F KS+R +
Sbjct: 91 RKALKDPFLPKSVRGY 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,696,916
Number of Sequences: 62578
Number of extensions: 275459
Number of successful extensions: 767
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 14
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)