BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038355
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2
SV=1
Length = 112
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 72/89 (80%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H+VT +EL PRP KGKTSKR F RN+I+EVAG APYEKRI LLKVGKDKRALK+AK
Sbjct: 18 HVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAK 77
Query: 61 RKLCTYERAKMKHGEMSNVLCRMRATGGG 89
RKL T++RAK K EMS+VL +MR+ GGG
Sbjct: 78 RKLGTHKRAKRKREEMSSVLRKMRSGGGG 106
>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2
SV=1
Length = 113
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 70/89 (78%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H+VT +EL PRP KGKTSKR F R +IREVAG APYEKRI LLKVGKDKRALK+AK
Sbjct: 18 HVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAK 77
Query: 61 RKLCTYERAKMKHGEMSNVLCRMRATGGG 89
RKL T++RAK K EMS+VL +MR+ GG
Sbjct: 78 RKLGTHKRAKRKREEMSSVLRKMRSLGGA 106
>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3
SV=1
Length = 108
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H+VT +E PRP + KGKTSKR F RN+I+EVAG APYEKRI LLKVGKDKRALK+AK
Sbjct: 14 HVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAK 73
Query: 61 RKLCTYERAKMKHGEMSNVLCRMRATGGGKKKK 93
RKL T++RAK K EMS+VL +MR+ G G +K
Sbjct: 74 RKLGTHKRAKRKREEMSSVLRKMRSGGAGASEK 106
>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2
Length = 106
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
HIVT KEL PRP D KGKTSKR HF RN+IREVAGF PYEKRI LLKVGKDKRALK+ +
Sbjct: 18 HIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQ 77
Query: 61 RKLCTYERAKMKHGEMSNVLC 81
K+ + +K + E +V C
Sbjct: 78 EKVGHSQESKEE--ERGDVQC 96
>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3
SV=1
Length = 101
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT K PRP KG S+R+ R V+REVAG+APYE+R+ LLKVGKDKRALK+ K
Sbjct: 12 HQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCK 71
Query: 61 RKLCTYERAKMKHGEMSNVLCRMRATGGG 89
RKL T+ R K K EM+ VL +M+A G
Sbjct: 72 RKLGTHMRGKKKREEMAGVLRKMQAASKG 100
>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1
Length = 110
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 57/92 (61%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT E PRP KG SK F R++IREV GFAP+E+R LLKV KDKRALK K
Sbjct: 15 HKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVLCRMRATGGGKKK 92
++L T+ R K K E+SNVL R K+K
Sbjct: 75 KRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106
>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl36a PE=3 SV=2
Length = 99
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 59/79 (74%)
Query: 2 IVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKR 61
++T ++L RP KG+ SKR F R+++REVAGFAPYE+R+ L++ +DKRA KLAK+
Sbjct: 14 VLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKK 73
Query: 62 KLCTYERAKMKHGEMSNVL 80
+L T +RAK K E+++V+
Sbjct: 74 RLGTLKRAKGKIEELTSVI 92
>sp|O94658|RL36B_SCHPO 60S ribosomal protein L36-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl36b PE=3 SV=1
Length = 99
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 58/82 (70%)
Query: 3 VTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRK 62
+T ++L RP KG SKR F R+++REVAGFAPYE+R+ L++ +DKRA KLAK++
Sbjct: 15 LTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKR 74
Query: 63 LCTYERAKMKHGEMSNVLCRMR 84
L T +RAK K E+++V+ R
Sbjct: 75 LGTLKRAKGKIEELTSVIQSSR 96
>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3
SV=1
Length = 105
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT PR +G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K
Sbjct: 15 HRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SNVL
Sbjct: 75 KRIGTHIRAKRKREELSNVL 94
>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1
Length = 105
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT PR +G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K
Sbjct: 15 HRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SNVL
Sbjct: 75 KRIGTHIRAKRKREELSNVL 94
>sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3
SV=1
Length = 105
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT PR +G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K
Sbjct: 15 HKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SNVL
Sbjct: 75 KRVGTHIRAKRKREELSNVL 94
>sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3
Length = 105
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT PR +G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K
Sbjct: 15 HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SNVL
Sbjct: 75 KRVGTHIRAKRKREELSNVL 94
>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3
Length = 105
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT PR +G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K
Sbjct: 15 HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SNVL
Sbjct: 75 KRVGTHIRAKRKREELSNVL 94
>sp|Q3T171|RL36_BOVIN 60S ribosomal protein L36 OS=Bos taurus GN=RPL36 PE=3 SV=3
Length = 105
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT PR +G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K
Sbjct: 15 HKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SNVL
Sbjct: 75 KRVGTHIRAKRKREELSNVL 94
>sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1
Length = 105
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H T + + PR KG SKR F R V++EVAG APYE+R+ LL+ KDKRA KLAK
Sbjct: 19 HKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAK 78
Query: 61 RKLCTYERAKMKHGEMSNVLCRMR 84
++L T+ RAK K E+ V+ R
Sbjct: 79 KRLGTFGRAKRKVDELQRVIAESR 102
>sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1
Length = 105
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 3 VTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRK 62
VT PR +G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K++
Sbjct: 17 VTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKR 76
Query: 63 LCTYERAKMKHGEMSNVL 80
+ T+ RAK K E+SNVL
Sbjct: 77 VGTHIRAKRKREELSNVL 94
>sp|P39032|RL36_RAT 60S ribosomal protein L36 OS=Rattus norvegicus GN=Rpl36 PE=1 SV=2
Length = 105
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT PR +G+ +K F R++IREV FAPYE+R LLKV KDKRALK K
Sbjct: 15 HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SNVL
Sbjct: 75 KRVGTHIRAKRKREELSNVL 94
>sp|Q6Q415|RL36_DANRE 60S ribosomal protein L36 OS=Danio rerio GN=rpl36 PE=3 SV=1
Length = 105
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT P+ +G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K
Sbjct: 15 HKVTKNVSKPKHSRRRGRLTKHAKFARDLIREVCGFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SN L
Sbjct: 75 KRVGTHIRAKRKREELSNTL 94
>sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila melanogaster GN=RpL36 PE=3
SV=1
Length = 115
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 25 FERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMR 84
F R+++REV G APYEKR LLKV KDKRALK KR+L T+ RAK K E+SN+L ++R
Sbjct: 49 FMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
>sp|Q90YT2|RL36_ICTPU 60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3
SV=1
Length = 105
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT P+ G+ +K F R++IREV GFAPYE+R LLKV KDKRALK K
Sbjct: 15 HPVTKNVTKPKHSRRGGRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SN+L
Sbjct: 75 KRVGTHIRAKRKREELSNIL 94
>sp|P49181|RL36_CAEEL 60S ribosomal protein L36 OS=Caenorhabditis elegans GN=rpl-36 PE=1
SV=3
Length = 104
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H T + R KG SK+ R ++RE+ GFAPYE+R+ +L++ KDKRALK K
Sbjct: 17 HAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLK 76
Query: 61 RKLCTYERAKMKHGEMSNVLCRMR 84
R++ T+ RAK K E+ NV+ R
Sbjct: 77 RRIGTHRRAKGKREELQNVIIAQR 100
>sp|P47964|RL36_MOUSE 60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2
Length = 105
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 50/80 (62%)
Query: 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAK 60
H VT PR + + + F R++IREV GFAPYE+R LLKV K KRALK K
Sbjct: 15 HKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIK 74
Query: 61 RKLCTYERAKMKHGEMSNVL 80
+++ T+ RAK K E+SNVL
Sbjct: 75 KRVGTHIRAKRKREELSNVL 94
>sp|P05745|RL36A_YEAST 60S ribosomal protein L36-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL36A PE=1 SV=3
Length = 100
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%)
Query: 3 VTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRK 62
VT+ P+ KG S R F R+++RE+AG +PYE+R+ L++ +KRA K+AK++
Sbjct: 17 VTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKR 76
Query: 63 LCTYERAKMKHGEMSNVLCRMR 84
L ++ RAK K EM+N++ R
Sbjct: 77 LGSFTRAKAKVEEMNNIIAASR 98
>sp|Q55AQ9|RL36_DICDI 60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36
PE=3 SV=1
Length = 105
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 46/60 (76%)
Query: 20 SKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNV 79
+KR+ R+VIRE++GF+PYE+R+ LLK G DKRALK+AK++L + + K K +++N+
Sbjct: 39 TKRVAAIRDVIREISGFSPYERRVSELLKSGLDKRALKVAKKRLGSIQAGKKKRDDIANI 98
>sp|O14455|RL36B_YEAST 60S ribosomal protein L36-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL36B PE=1 SV=3
Length = 100
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 3 VTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRK 62
VT P+ KG S R F R+++RE+AG +PYE+R+ L++ +KRA K+AK++
Sbjct: 17 VTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKR 76
Query: 63 LCTYERAKMKHGEMSNVLCRMR 84
L ++ RAK K EM+N++ R
Sbjct: 77 LGSFTRAKAKVEEMNNIIAASR 98
>sp|Q24F59|RL36_TETTS 60S ribosomal protein L36 OS=Tetrahymena thermophila (strain
SB210) GN=RPL36 PE=1 SV=1
Length = 104
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 12 PVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGK---DKRALKLAKRKLCTYER 68
V KGK KR+ R VIREV GFAPYEKRI L+K G K+A K+A+++L T+ R
Sbjct: 27 AVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRR 86
Query: 69 AKMK 72
AK+K
Sbjct: 87 AKVK 90
>sp|P0C6E6|RL36X_HUMAN Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5 SV=1
Length = 105
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 10 PRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERA 69
PR G+ +K R +I+EV GF PYE+ LLKV KDK+ALK K+++ T+
Sbjct: 24 PRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKDKQALKFIKKRVGTHIHT 83
Query: 70 KMKHGEMSNVLCRMRATGGGK 90
K K E+SNVL R K
Sbjct: 84 KRKREELSNVLAITRKVAAMK 104
>sp|P47834|RL36_CANAX 60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1
Length = 99
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 4 TNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKL 63
T KE+ P+ KG +S+R F R++++EVAG APYE+R+ L++ +KRA KLAK++L
Sbjct: 17 TAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRL 76
Query: 64 CTYERAKMKHGEMSNVLCRMR 84
T++RA K EM+ V+ R
Sbjct: 77 GTHKRALRKVEEMTQVIAESR 97
>sp|Q03001|DYST_HUMAN Dystonin OS=Homo sapiens GN=DST PE=1 SV=4
Length = 7570
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 24 HFERNVIREV-AGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYER---AKMKHGEMSNV 79
HF+ N IRE+ + FA ++ +D++ VG+D L+ K + + + A M + +N
Sbjct: 5175 HFQ-NTIREMFSQFAEFDDELDSMAPVGRDAETLQKQKETIKAFLKKLEALMASNDNANK 5233
Query: 80 LCRM 83
C+M
Sbjct: 5234 TCKM 5237
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 GKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKD 52
GKT+ I+F + V+ E P + RI++LLK+G D
Sbjct: 724 GKTTACINFSKMVVEECNS-NPLKGRIESLLKIGSD 758
>sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915
OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1
Length = 463
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 32 EVAGFAP----YEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLCRMRATG 87
++AG P Y +DAL K G AL+L K ++ M + + N LC+ R G
Sbjct: 146 QLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQSRFKPELMTYNILINGLCKSRRVG 205
Query: 88 GGK 90
K
Sbjct: 206 TAK 208
>sp|Q562A2|ZFR_RAT Zinc finger RNA-binding protein OS=Rattus norvegicus GN=Zfr PE=1
SV=2
Length = 1073
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 26 ERNVIREVAGFAPYEKRIDALLK-VGKDKRALKLAKRKLCTYERAKMKHGE 75
+R V+ + A P E+ + A+ K V +RALKL L +E++K K G+
Sbjct: 723 DRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKNKEGD 773
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,937,438
Number of Sequences: 539616
Number of extensions: 1171174
Number of successful extensions: 3234
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3201
Number of HSP's gapped (non-prelim): 44
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)