Query 038355
Match_columns 93
No_of_seqs 102 out of 225
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_k 60S ribosomal protein R 100.0 2.6E-49 8.9E-54 272.4 1.2 86 1-86 15-100 (100)
2 4a18_Q RPL36, 60S ribosomal pr 100.0 2E-47 6.9E-52 264.5 10.0 85 1-85 13-103 (104)
3 3iz5_k 60S ribosomal protein L 100.0 1.5E-49 5.2E-54 278.0 -1.5 88 1-88 18-105 (112)
4 3qks_C DNA double-strand break 53.7 4.6 0.00016 22.6 0.9 13 36-48 4-16 (34)
5 3r0a_A Putative transcriptiona 46.2 16 0.00056 23.4 2.9 27 26-52 14-40 (123)
6 2oyn_A Hypothetical protein MJ 35.4 17 0.00059 25.7 1.8 17 24-40 27-43 (146)
7 2yy0_A C-MYC-binding protein; 24.3 88 0.003 18.2 3.3 10 55-64 3-12 (53)
8 3mxn_A RECQ-mediated genome in 14.7 1.1E+02 0.0039 21.7 2.7 22 22-43 74-95 (157)
9 1sfx_A Conserved hypothetical 14.6 1.9E+02 0.0065 16.4 3.6 17 33-49 15-31 (109)
10 1xu0_A Prion protein, XLPRP; a 14.4 80 0.0027 22.1 1.7 15 21-35 109-123 (130)
No 1
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=100.00 E-value=2.6e-49 Score=272.40 Aligned_cols=86 Identities=38% Similarity=0.614 Sum_probs=75.9
Q ss_pred CccccCCCCCCCCCCCCCCcchhHHHHHHHHHhhccchhHHhHHHHhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 038355 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVL 80 (93)
Q Consensus 1 h~vtk~~~~~r~s~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~eLlk~~kdKrAlKf~KKrlGth~RAKrK~eel~~vl 80 (93)
|+||+|+++||||+++|.+|||++||||||+|||||||||+++||||++|+||+||||+|+|||||+|||+|+|||+|||
T Consensus 15 hkvtk~~~k~r~s~~kg~~tK~tkfVrdiIrEV~GfaPYErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl 94 (100)
T 3izc_k 15 KKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNII 94 (100)
T ss_dssp ---------CCCCSSCSHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred cccccCCCCCCcccccCCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 038355 81 CRMRAT 86 (93)
Q Consensus 81 ~~~Rk~ 86 (93)
++||++
T Consensus 95 ~~~Rk~ 100 (100)
T 3izc_k 95 AASRRH 100 (100)
T ss_dssp HHTTCC
T ss_pred HHHhcC
Confidence 999973
No 2
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=100.00 E-value=2e-47 Score=264.48 Aligned_cols=85 Identities=45% Similarity=0.628 Sum_probs=84.0
Q ss_pred Cccc---cCCCCCCCCCCCCCCcchhHHHHHHHHHhhccchhHHhHHHHhhhcc---hhhHHHHHHHhhhhhHHHHHHHH
Q 038355 1 HIVT---NKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGK---DKRALKLAKRKLCTYERAKMKHG 74 (93)
Q Consensus 1 h~vt---k~~~~~r~s~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~eLlk~~k---dKrAlKf~KKrlGth~RAKrK~e 74 (93)
|+|| +|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+ ||+||||+|+|||||+|||+|+|
T Consensus 13 hkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKre 92 (104)
T 4a18_Q 13 FITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKA 92 (104)
T ss_dssp CCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred cccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 8899 99999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 038355 75 EMSNVLCRMRA 85 (93)
Q Consensus 75 el~~vl~~~Rk 85 (93)
||+|||++||+
T Consensus 93 el~~vl~~~Rk 103 (104)
T 4a18_Q 93 LLEEAVRAQRK 103 (104)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999999996
No 3
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=100.00 E-value=1.5e-49 Score=278.01 Aligned_cols=88 Identities=72% Similarity=1.050 Sum_probs=68.5
Q ss_pred CccccCCCCCCCCCCCCCCcchhHHHHHHHHHhhccchhHHhHHHHhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 038355 1 HIVTNKELLPRPVDPKGKTSKRIHFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVL 80 (93)
Q Consensus 1 h~vtk~~~~~r~s~~kg~~tkr~kfvr~~IrEv~GfaPYEkr~~eLlk~~kdKrAlKf~KKrlGth~RAKrK~eel~~vl 80 (93)
|+||+|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+|||||+|||+|+|||+|||
T Consensus 18 hkvTk~~~k~r~s~~kg~ltK~tkfVrdiIrEV~GfAPYErR~mELLKvskDKRALKf~KKRlGth~RAKrKreel~~vl 97 (112)
T 3iz5_k 18 HVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVL 97 (112)
T ss_dssp ------------------CTTTSSCSHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHSSCCSHHHHHHHHHTSSCCCH
T ss_pred cccCCCCCCCCcccccCCCcchhHHHHHHHHHHhcCchHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 038355 81 CRMRATGG 88 (93)
Q Consensus 81 ~~~Rk~~a 88 (93)
++||++++
T Consensus 98 ~~~Rka~~ 105 (112)
T 3iz5_k 98 RKMRSAGG 105 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 99999654
No 4
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=53.74 E-value=4.6 Score=22.62 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=9.4
Q ss_pred cchhHHhHHHHhh
Q 038355 36 FAPYEKRIDALLK 48 (93)
Q Consensus 36 faPYEkr~~eLlk 48 (93)
|.|+|.+++||+-
T Consensus 4 Ft~~ElKiI~l~G 16 (34)
T 3qks_C 4 FTEFELKIIDILG 16 (34)
T ss_dssp --CHHHHHHHHC-
T ss_pred ccHHHHHHHHHHc
Confidence 7899999999963
No 5
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=46.15 E-value=16 Score=23.42 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=21.9
Q ss_pred HHHHHHHhhccchhHHhHHHHhhhcch
Q 038355 26 ERNVIREVAGFAPYEKRIDALLKVGKD 52 (93)
Q Consensus 26 vr~~IrEv~GfaPYEkr~~eLlk~~kd 52 (93)
+.+++..+.||.|.|..++.+|-....
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~ 40 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPD 40 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 467778889999999999999875433
No 6
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=35.41 E-value=17 Score=25.65 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhccchhH
Q 038355 24 HFERNVIREVAGFAPYE 40 (93)
Q Consensus 24 kfvr~~IrEv~GfaPYE 40 (93)
.+.++-++|.+||.||.
T Consensus 27 ~~Y~~qf~~~LGF~PfP 43 (146)
T 2oyn_A 27 PPYKEIFKKILGFEPYE 43 (146)
T ss_dssp HHHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHhCCcCCC
Confidence 45788899999999995
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.28 E-value=88 Score=18.20 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHhhh
Q 038355 55 ALKLAKRKLC 64 (93)
Q Consensus 55 AlKf~KKrlG 64 (93)
|+.|||+-||
T Consensus 3 AlefIk~~LG 12 (53)
T 2yy0_A 3 ALDFLKHHLG 12 (53)
T ss_dssp ----------
T ss_pred HHHHHHHHcC
Confidence 6677777777
No 8
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=14.74 E-value=1.1e+02 Score=21.70 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHhhccchhHHhH
Q 038355 22 RIHFERNVIREVAGFAPYEKRI 43 (93)
Q Consensus 22 r~kfvr~~IrEv~GfaPYEkr~ 43 (93)
-+.|..+|+.+..||+|-|-..
T Consensus 74 dV~f~~~VLt~lIGfS~~E~~~ 95 (157)
T 3mxn_A 74 DVDFVDEILTSLIGFSVPEMKQ 95 (157)
T ss_dssp EEEECHHHHHHHHSCCHHHHHH
T ss_pred EEEeeHHHHHhhhCCCHHHHHH
Confidence 3567889999999999999543
No 9
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=14.63 E-value=1.9e+02 Score=16.43 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=15.1
Q ss_pred hhccchhHHhHHHHhhh
Q 038355 33 VAGFAPYEKRIDALLKV 49 (93)
Q Consensus 33 v~GfaPYEkr~~eLlk~ 49 (93)
..|+.|.+..++++|..
T Consensus 15 ~~~l~~~~~~il~~l~~ 31 (109)
T 1sfx_A 15 KLSFKPSDVRIYSLLLE 31 (109)
T ss_dssp HTCCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHH
Confidence 57999999999999964
No 10
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=14.38 E-value=80 Score=22.09 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHhhc
Q 038355 21 KRIHFERNVIREVAG 35 (93)
Q Consensus 21 kr~kfvr~~IrEv~G 35 (93)
-++++++.||+|+|-
T Consensus 109 l~~rvl~r~i~emC~ 123 (130)
T 1xu0_A 109 LDTTVKSQIIREMCI 123 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999999994
Done!