Query 038355
Match_columns 93
No_of_seqs 102 out of 225
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 17:30:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038355.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038355hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a1 g.39.1.3 (A:1-35) Pinc 42.1 2.5 0.00018 22.5 -0.0 8 34-41 15-22 (35)
2 d1sfxa_ a.4.5.50 (A:) Hypothet 41.0 15 0.0011 21.6 3.6 16 34-49 16-31 (109)
3 d3ctaa2 b.43.5.2 (A:90-220) CT 24.2 13 0.00093 24.2 1.2 16 26-41 26-41 (131)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 24.1 18 0.0013 19.8 1.7 16 19-34 27-42 (50)
5 d2hzaa1 a.43.1.3 (A:1-48) Nick 24.0 23 0.0016 19.3 2.1 16 19-34 25-40 (48)
6 d2vbua1 b.43.5.2 (A:2-132) CTP 23.2 14 0.001 23.9 1.3 15 26-40 26-40 (131)
7 d1tuaa1 d.51.1.1 (A:1-84) Hypo 22.0 19 0.0014 21.2 1.6 24 22-47 58-82 (84)
8 d1oywa2 c.37.1.19 (A:1-206) Re 18.5 44 0.0032 20.6 2.9 27 25-51 12-41 (206)
9 d1yioa1 a.4.6.2 (A:131-200) Re 17.1 53 0.0038 17.9 2.8 25 28-52 4-29 (70)
10 d3bqoa1 a.146.1.1 (A:62-265) T 14.5 76 0.0055 21.9 3.6 50 24-81 109-158 (204)
No 1
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.07 E-value=2.5 Score=22.51 Aligned_cols=8 Identities=75% Similarity=1.194 Sum_probs=6.9
Q ss_pred hccchhHH
Q 038355 34 AGFAPYEK 41 (93)
Q Consensus 34 ~GfaPYEk 41 (93)
.||+|.|+
T Consensus 15 ~gF~p~Ek 22 (35)
T d1g47a1 15 GGFAPAEK 22 (35)
T ss_dssp CBCCSTTT
T ss_pred cCCCchHH
Confidence 49999997
No 2
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=40.96 E-value=15 Score=21.63 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.0
Q ss_pred hccchhHHhHHHHhhh
Q 038355 34 AGFAPYEKRIDALLKV 49 (93)
Q Consensus 34 ~GfaPYEkr~~eLlk~ 49 (93)
.||.|+|.+++..|-.
T Consensus 16 lGlt~~e~~v~~~L~~ 31 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLE 31 (109)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999888753
No 3
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=24.19 E-value=13 Score=24.19 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=12.8
Q ss_pred HHHHHHHhhccchhHH
Q 038355 26 ERNVIREVAGFAPYEK 41 (93)
Q Consensus 26 vr~~IrEv~GfaPYEk 41 (93)
.++-++|.+||.||.-
T Consensus 26 Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 26 YIIQFQEKLGIIPYLG 41 (131)
T ss_dssp CHHHHHHHSCSCCCC-
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3677899999999963
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.12 E-value=18 Score=19.85 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.3
Q ss_pred CcchhHHHHHHHHHhh
Q 038355 19 TSKRIHFERNVIREVA 34 (93)
Q Consensus 19 ~tkr~kfvr~~IrEv~ 34 (93)
-+-|..+|||+||+..
T Consensus 27 y~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 27 YENRSEAIRDLIRDFI 42 (50)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4678999999999863
No 5
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.98 E-value=23 Score=19.27 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.4
Q ss_pred CcchhHHHHHHHHHhh
Q 038355 19 TSKRIHFERNVIREVA 34 (93)
Q Consensus 19 ~tkr~kfvr~~IrEv~ 34 (93)
-+-|..+|||+||+..
T Consensus 25 y~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 25 YNNRSEAIRDILRSAL 40 (48)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4779999999999863
No 6
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=23.21 E-value=14 Score=23.90 Aligned_cols=15 Identities=33% Similarity=0.964 Sum_probs=13.1
Q ss_pred HHHHHHHhhccchhH
Q 038355 26 ERNVIREVAGFAPYE 40 (93)
Q Consensus 26 vr~~IrEv~GfaPYE 40 (93)
.++-++|..||.||.
T Consensus 26 Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 26 YKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHhCCCCCC
Confidence 578899999999994
No 7
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=22.04 E-value=19 Score=21.22 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHh-hccchhHHhHHHHh
Q 038355 22 RIHFERNVIREV-AGFAPYEKRIDALL 47 (93)
Q Consensus 22 r~kfvr~~IrEv-~GfaPYEkr~~eLl 47 (93)
-..-++++|.++ -||+|=. ++.||
T Consensus 58 a~~~a~~iI~aI~rGf~Pe~--a~~ll 82 (84)
T d1tuaa1 58 NLMKAAEVVKAISLGFPPEK--AFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHHH--HGGGG
T ss_pred HHHHHHHHHHHHhCCCChHH--HHHhc
Confidence 445689999999 4999952 44443
No 8
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=18.55 E-value=44 Score=20.59 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcc---chhHHhHHHHhhhcc
Q 038355 25 FERNVIREVAGF---APYEKRIDALLKVGK 51 (93)
Q Consensus 25 fvr~~IrEv~Gf---aPYEkr~~eLlk~~k 51 (93)
-+++++++..|| .||-..+++.+-.++
T Consensus 12 ~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~ 41 (206)
T d1oywa2 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSGR 41 (206)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC
Confidence 378999999875 588888888776544
No 9
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=17.10 E-value=53 Score=17.90 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHh-hccchhHHhHHHHhhhcch
Q 038355 28 NVIREV-AGFAPYEKRIDALLKVGKD 52 (93)
Q Consensus 28 ~~IrEv-~GfaPYEkr~~eLlk~~kd 52 (93)
+-+.+. .+|+|=|..++.+|-.|..
T Consensus 4 ~~~~~~~~~LT~rE~~vl~~l~~G~s 29 (70)
T d1yioa1 4 DQLEQLFSSLTGREQQVLQLTIRGLM 29 (70)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHccCCHHHHHHHHHHHcCCC
Confidence 444555 4899999999999987653
No 10
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.53 E-value=76 Score=21.92 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhccchhHHhHHHHhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 038355 24 HFERNVIREVAGFAPYEKRIDALLKVGKDKRALKLAKRKLCTYERAKMKHGEMSNVLC 81 (93)
Q Consensus 24 kfvr~~IrEv~GfaPYEkr~~eLlk~~kdKrAlKf~KKrlGth~RAKrK~eel~~vl~ 81 (93)
.-++++|.|.+ ++=.++.+..+.|-..+++=.|.--.-+..+.+|..|+.
T Consensus 109 e~i~~lik~qA--------V~vCmekg~fk~A~eilkr~f~~~~~~~~lr~~L~~iI~ 158 (204)
T d3bqoa1 109 EEIQNLIKIQA--------IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 158 (204)
T ss_dssp HHHHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33566666654 556678899999999999877766656667778887774
Done!