Query 038356
Match_columns 78
No_of_seqs 195 out of 1287
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 17:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.8 8.7E-21 3E-25 115.3 4.7 70 1-71 77-146 (216)
2 2g3y_A GTP-binding protein GEM 99.7 6.6E-17 2.3E-21 97.8 5.1 63 2-65 104-167 (211)
3 2fu5_C RAS-related protein RAB 99.6 6.1E-16 2.1E-20 90.1 7.1 61 2-63 73-133 (183)
4 2cjw_A GTP-binding protein GEM 99.6 6.6E-16 2.2E-20 91.5 5.7 62 2-64 73-135 (192)
5 3cbq_A GTP-binding protein REM 99.6 4.5E-16 1.5E-20 92.4 4.8 61 2-63 89-150 (195)
6 3q72_A GTP-binding protein RAD 99.6 1.5E-15 5.2E-20 87.0 6.6 64 2-66 65-129 (166)
7 3t5g_A GTP-binding protein RHE 99.6 2.8E-15 9.7E-20 87.1 7.3 64 2-66 70-134 (181)
8 3tkl_A RAS-related protein RAB 99.6 2.7E-15 9.1E-20 88.1 6.5 61 2-63 81-141 (196)
9 3dz8_A RAS-related protein RAB 99.6 1.3E-15 4.3E-20 89.7 5.0 61 3-64 89-149 (191)
10 2hup_A RAS-related protein RAB 99.6 1.2E-15 4.2E-20 90.7 5.0 59 3-62 95-153 (201)
11 3q3j_B RHO-related GTP-binding 99.6 1.8E-15 6.1E-20 90.9 5.4 54 2-57 91-145 (214)
12 3q85_A GTP-binding protein REM 99.6 1.5E-15 5.3E-20 87.2 4.6 63 2-65 68-131 (169)
13 2bcg_Y Protein YP2, GTP-bindin 99.6 9.6E-15 3.3E-19 86.6 8.1 61 2-63 73-133 (206)
14 2a5j_A RAS-related protein RAB 99.6 3E-15 1E-19 88.1 5.8 61 2-63 86-146 (191)
15 2nzj_A GTP-binding protein REM 99.6 3.3E-15 1.1E-19 86.1 5.8 61 3-64 71-132 (175)
16 2ew1_A RAS-related protein RAB 99.6 2E-15 7E-20 90.2 4.7 60 3-63 92-151 (201)
17 1z0j_A RAB-22, RAS-related pro 99.6 4.9E-15 1.7E-19 84.9 6.2 61 2-63 71-131 (170)
18 2efe_B Small GTP-binding prote 99.6 7.8E-15 2.7E-19 85.0 6.9 60 2-62 77-136 (181)
19 3tw8_B RAS-related protein RAB 99.6 8.7E-15 3E-19 84.6 6.9 61 2-64 74-134 (181)
20 2gf9_A RAS-related protein RAB 99.6 6.9E-15 2.4E-19 86.3 6.5 60 2-62 87-146 (189)
21 3kkq_A RAS-related protein M-R 99.6 2.6E-15 9E-20 87.4 4.7 63 2-65 82-145 (183)
22 2g6b_A RAS-related protein RAB 99.6 7.3E-15 2.5E-19 85.1 6.5 61 2-63 76-136 (180)
23 3cpj_B GTP-binding protein YPT 99.6 4E-15 1.4E-19 89.6 5.4 61 2-63 78-138 (223)
24 2yc2_C IFT27, small RAB-relate 99.6 6.8E-15 2.3E-19 86.9 6.2 59 3-62 90-152 (208)
25 1r2q_A RAS-related protein RAB 99.6 3.9E-15 1.3E-19 85.2 4.9 59 3-62 72-130 (170)
26 3oes_A GTPase rhebl1; small GT 99.6 7.6E-15 2.6E-19 87.0 6.2 63 2-65 88-151 (201)
27 1z06_A RAS-related protein RAB 99.6 5.2E-15 1.8E-19 86.8 5.4 61 2-63 86-147 (189)
28 3c5c_A RAS-like protein 12; GD 99.6 2.1E-15 7.2E-20 88.7 3.7 59 4-63 86-147 (187)
29 3l0i_B RAS-related protein RAB 99.6 1.7E-15 5.7E-20 89.7 3.3 60 2-62 98-157 (199)
30 1zbd_A Rabphilin-3A; G protein 99.6 9.3E-15 3.2E-19 86.4 6.4 59 3-62 74-132 (203)
31 1z08_A RAS-related protein RAB 99.5 4E-15 1.4E-19 85.4 4.3 60 2-62 71-130 (170)
32 4djt_A GTP-binding nuclear pro 99.5 1.5E-14 5E-19 86.5 6.9 64 2-66 77-140 (218)
33 2o52_A RAS-related protein RAB 99.5 5.5E-15 1.9E-19 87.7 5.0 60 2-62 90-149 (200)
34 2fg5_A RAB-22B, RAS-related pr 99.5 6.9E-15 2.4E-19 86.6 5.4 60 2-62 88-147 (192)
35 2bme_A RAB4A, RAS-related prot 99.5 6E-15 2.1E-19 85.9 4.5 60 3-63 76-135 (186)
36 2iwr_A Centaurin gamma 1; ANK 99.5 1E-14 3.4E-19 84.6 5.3 58 4-62 67-129 (178)
37 1z0f_A RAB14, member RAS oncog 99.5 1E-14 3.4E-19 84.2 5.0 59 3-62 81-139 (179)
38 1ek0_A Protein (GTP-binding pr 99.5 1E-14 3.5E-19 83.4 4.9 59 3-62 69-130 (170)
39 3reg_A RHO-like small GTPase; 99.5 1.9E-14 6.5E-19 84.7 6.1 59 2-62 87-148 (194)
40 1g16_A RAS-related protein SEC 99.5 2E-14 7E-19 82.3 6.0 55 2-57 68-122 (170)
41 1m7b_A RND3/RHOE small GTP-bin 99.5 1.6E-14 5.3E-19 84.5 5.4 54 2-57 71-125 (184)
42 3ihw_A Centg3; RAS, centaurin, 99.5 1.4E-14 4.9E-19 85.1 5.2 57 6-63 82-141 (184)
43 3r7w_B Gtpase2, GTP-binding pr 99.5 1.5E-14 5.1E-19 92.8 5.5 67 3-71 66-141 (331)
44 2atx_A Small GTP binding prote 99.5 3.6E-14 1.2E-18 83.4 6.7 55 2-58 82-137 (194)
45 2y8e_A RAB-protein 6, GH09086P 99.5 9E-15 3.1E-19 84.4 3.8 61 2-63 79-139 (179)
46 2oil_A CATX-8, RAS-related pro 99.5 1.8E-14 6.1E-19 84.6 4.7 60 2-62 90-149 (193)
47 2hxs_A RAB-26, RAS-related pro 99.5 1E-14 3.5E-19 84.3 3.5 61 2-63 72-135 (178)
48 1f6b_A SAR1; gtpases, N-termin 99.5 1.4E-13 4.8E-18 81.7 8.4 56 2-58 85-141 (198)
49 2il1_A RAB12; G-protein, GDP, 99.5 1.2E-14 4.3E-19 85.6 3.6 60 3-63 92-151 (192)
50 1gwn_A RHO-related GTP-binding 99.5 3.2E-14 1.1E-18 85.1 5.4 54 2-57 92-146 (205)
51 2fn4_A P23, RAS-related protei 99.5 1.9E-14 6.4E-19 83.2 4.0 61 2-63 73-134 (181)
52 1m2o_B GTP-binding protein SAR 99.5 2.4E-13 8.1E-18 80.2 8.7 62 2-64 83-145 (190)
53 1r8s_A ADP-ribosylation factor 99.5 1.7E-13 5.9E-18 78.2 7.8 64 3-67 61-125 (164)
54 4bas_A ADP-ribosylation factor 99.5 1.2E-13 4.1E-18 81.1 7.3 65 2-67 79-151 (199)
55 3bc1_A RAS-related protein RAB 99.5 3.6E-14 1.2E-18 82.7 4.9 59 3-62 87-146 (195)
56 3cph_A RAS-related protein SEC 99.5 8.5E-14 2.9E-18 82.6 6.5 59 2-62 85-143 (213)
57 1c1y_A RAS-related protein RAP 99.5 2.3E-14 7.7E-19 81.9 3.8 60 2-62 67-127 (167)
58 2atv_A RERG, RAS-like estrogen 99.5 1.1E-14 3.6E-19 86.0 2.5 60 3-63 92-152 (196)
59 1fzq_A ADP-ribosylation factor 99.5 1.5E-13 5E-18 80.5 7.3 64 3-67 77-141 (181)
60 1ksh_A ARF-like protein 2; sma 99.5 3.6E-13 1.2E-17 78.5 9.0 65 2-67 78-143 (186)
61 1z2a_A RAS-related protein RAB 99.5 3.2E-14 1.1E-18 81.3 4.1 59 2-62 70-128 (168)
62 3c5h_A Glucocorticoid receptor 99.5 1.8E-14 6.1E-19 88.9 3.1 53 10-62 162-217 (255)
63 2f7s_A C25KG, RAS-related prot 99.5 3.1E-14 1.1E-18 85.0 4.0 59 3-62 101-160 (217)
64 2q3h_A RAS homolog gene family 99.5 6.2E-14 2.1E-18 82.8 5.3 54 2-57 84-138 (201)
65 1u8z_A RAS-related protein RAL 99.5 2.1E-14 7.1E-19 81.9 3.1 59 3-62 69-128 (168)
66 2b6h_A ADP-ribosylation factor 99.5 3E-13 1E-17 79.9 8.0 66 2-68 89-155 (192)
67 2p5s_A RAS and EF-hand domain 99.5 1.7E-14 5.8E-19 85.4 2.6 53 3-56 94-146 (199)
68 2h17_A ADP-ribosylation factor 99.5 5.2E-13 1.8E-17 77.8 8.9 64 2-66 81-145 (181)
69 3t1o_A Gliding protein MGLA; G 99.5 1.6E-13 5.3E-18 80.2 6.6 55 3-59 91-151 (198)
70 3gj0_A GTP-binding nuclear pro 99.5 2.6E-13 8.7E-18 81.4 7.5 56 2-59 80-135 (221)
71 2bov_A RAla, RAS-related prote 99.5 5.6E-14 1.9E-18 82.9 4.3 59 3-62 79-138 (206)
72 1upt_A ARL1, ADP-ribosylation 99.5 4.6E-13 1.6E-17 76.8 8.1 64 2-66 67-131 (171)
73 1ky3_A GTP-binding protein YPT 99.5 1.2E-13 4.3E-18 79.7 5.7 55 2-57 74-132 (182)
74 2j0v_A RAC-like GTP-binding pr 99.4 2.9E-14 1E-18 84.9 2.9 57 2-60 73-130 (212)
75 2x77_A ADP-ribosylation factor 99.4 7.4E-13 2.5E-17 77.4 8.8 65 2-67 82-147 (189)
76 1kao_A RAP2A; GTP-binding prot 99.4 4.4E-14 1.5E-18 80.5 3.4 60 3-63 68-128 (167)
77 2zej_A Dardarin, leucine-rich 99.4 4.4E-14 1.5E-18 82.8 3.5 59 2-62 72-131 (184)
78 1x3s_A RAS-related protein RAB 99.4 1.9E-13 6.4E-18 80.0 6.1 55 2-57 80-135 (195)
79 1moz_A ARL1, ADP-ribosylation 99.4 8.3E-13 2.8E-17 76.6 8.8 65 2-67 78-143 (183)
80 2a9k_A RAS-related protein RAL 99.4 4.2E-14 1.4E-18 82.1 3.2 59 3-62 83-142 (187)
81 3bwd_D RAC-like GTP-binding pr 99.4 3.8E-14 1.3E-18 82.1 3.0 57 2-60 72-129 (182)
82 1zj6_A ADP-ribosylation factor 99.4 4.6E-13 1.6E-17 78.3 7.7 61 2-63 76-137 (187)
83 1u0l_A Probable GTPase ENGC; p 99.4 7.8E-14 2.7E-18 88.1 4.6 57 1-61 76-133 (301)
84 1zd9_A ADP-ribosylation factor 99.4 6.5E-13 2.2E-17 77.9 8.0 65 2-67 83-148 (188)
85 2gco_A H9, RHO-related GTP-bin 99.4 2.6E-13 9E-18 80.4 6.0 55 2-58 89-144 (201)
86 2h57_A ADP-ribosylation factor 99.4 1.1E-12 3.8E-17 76.9 8.6 62 2-64 83-147 (190)
87 1wms_A RAB-9, RAB9, RAS-relate 99.4 3.9E-13 1.3E-17 77.5 6.3 58 3-62 73-134 (177)
88 3llu_A RAS-related GTP-binding 99.4 1.4E-13 4.8E-18 81.3 4.4 52 4-57 90-143 (196)
89 2j1l_A RHO-related GTP-binding 99.4 1.3E-13 4.3E-18 82.6 4.1 56 2-59 98-154 (214)
90 4dsu_A GTPase KRAS, isoform 2B 99.4 3.2E-13 1.1E-17 78.5 5.4 55 2-57 68-123 (189)
91 1mh1_A RAC1; GTP-binding, GTPa 99.4 1.9E-13 6.3E-18 79.3 4.1 55 2-58 69-124 (186)
92 1vg8_A RAS-related protein RAB 99.4 6.6E-13 2.3E-17 78.4 6.6 55 2-57 73-131 (207)
93 2erx_A GTP-binding protein DI- 99.4 5.8E-14 2E-18 80.4 1.9 60 3-63 68-129 (172)
94 3con_A GTPase NRAS; structural 99.4 7.2E-13 2.5E-17 77.5 6.3 55 2-57 85-140 (190)
95 2fv8_A H6, RHO-related GTP-bin 99.4 5.1E-13 1.7E-17 79.5 5.4 55 2-58 89-144 (207)
96 4gzl_A RAS-related C3 botulinu 99.4 5.6E-13 1.9E-17 79.3 5.1 57 2-60 94-151 (204)
97 3clv_A RAB5 protein, putative; 99.4 1.3E-12 4.5E-17 76.3 6.5 57 2-62 109-165 (208)
98 2ce2_X GTPase HRAS; signaling 99.4 8.3E-13 2.8E-17 74.9 4.7 54 3-57 68-122 (166)
99 1azs_C GS-alpha; complex (lyas 99.4 6.4E-13 2.2E-17 87.1 4.5 57 1-58 232-299 (402)
100 3o47_A ADP-ribosylation factor 99.3 3E-12 1E-16 81.6 7.1 67 2-69 225-292 (329)
101 3r7w_A Gtpase1, GTP-binding pr 99.3 7.3E-13 2.5E-17 83.7 4.2 55 2-57 73-129 (307)
102 3lvq_E ARF-GAP with SH3 domain 99.3 7.3E-12 2.5E-16 83.0 9.1 67 2-69 382-449 (497)
103 2xtz_A Guanine nucleotide-bind 99.3 8E-13 2.7E-17 85.4 3.5 56 1-57 198-264 (354)
104 2gf0_A GTP-binding protein DI- 99.3 8.7E-13 3E-17 77.4 3.3 54 3-57 73-128 (199)
105 2wkq_A NPH1-1, RAS-related C3 99.3 1.6E-12 5.5E-17 81.5 4.1 55 2-58 219-274 (332)
106 3th5_A RAS-related C3 botulinu 99.0 2E-13 6.9E-18 80.9 0.0 56 2-59 94-150 (204)
107 2f9l_A RAB11B, member RAS onco 99.3 5.8E-12 2E-16 74.5 6.0 60 2-62 70-129 (199)
108 2ged_A SR-beta, signal recogni 99.3 8.8E-12 3E-16 72.9 6.7 64 4-68 109-181 (193)
109 1oix_A RAS-related protein RAB 99.3 6.9E-12 2.3E-16 74.0 5.0 60 2-62 94-153 (191)
110 4fid_A G protein alpha subunit 99.2 3.2E-12 1.1E-16 82.3 2.8 55 2-57 177-242 (340)
111 1cip_A Protein (guanine nucleo 99.2 4.9E-12 1.7E-16 81.7 3.6 54 2-56 209-273 (353)
112 2fh5_B SR-beta, signal recogni 99.2 6.7E-11 2.3E-15 70.3 7.2 60 2-62 71-134 (214)
113 1nrj_B SR-beta, signal recogni 99.2 2.1E-11 7.3E-16 72.7 5.0 58 4-62 73-139 (218)
114 1zcb_A G alpha I/13; GTP-bindi 99.2 1.8E-11 6.2E-16 79.2 4.5 55 2-57 217-282 (362)
115 3ohm_A Guanine nucleotide-bind 99.2 2.7E-11 9.1E-16 77.7 4.5 58 1-59 182-250 (327)
116 2yv5_A YJEQ protein; hydrolase 99.1 3.4E-11 1.2E-15 76.1 4.0 54 2-59 72-126 (302)
117 2gj8_A MNME, tRNA modification 99.1 3.4E-11 1.1E-15 70.0 1.4 51 5-57 79-129 (172)
118 2qu8_A Putative nucleolar GTP- 99.0 6.1E-10 2.1E-14 67.1 5.7 57 5-63 104-162 (228)
119 3dpu_A RAB family protein; roc 99.0 6.9E-10 2.4E-14 74.4 5.1 58 2-64 114-171 (535)
120 3l82_B F-box only protein 4; T 98.9 1.4E-09 4.8E-14 66.4 3.9 67 1-69 117-189 (227)
121 2wji_A Ferrous iron transport 98.8 2.2E-09 7.6E-14 61.6 3.2 50 4-60 74-125 (165)
122 2lkc_A Translation initiation 98.8 1.3E-08 4.3E-13 58.4 6.1 49 2-58 71-122 (178)
123 2cxx_A Probable GTP-binding pr 98.8 3.8E-10 1.3E-14 65.5 -0.9 55 4-59 73-138 (190)
124 1lnz_A SPO0B-associated GTP-bi 98.8 5.4E-09 1.9E-13 67.2 4.3 55 4-59 228-290 (342)
125 1svi_A GTP-binding protein YSX 98.8 6.3E-09 2.2E-13 60.7 3.8 53 3-62 96-153 (195)
126 2dyk_A GTP-binding protein; GT 98.8 6E-09 2.1E-13 58.8 3.4 50 4-58 74-123 (161)
127 2e87_A Hypothetical protein PH 98.7 3.9E-08 1.3E-12 63.1 5.9 54 6-61 243-298 (357)
128 3iev_A GTP-binding protein ERA 98.7 1.9E-08 6.4E-13 63.6 3.8 49 4-56 87-135 (308)
129 3gee_A MNME, tRNA modification 98.6 6.1E-08 2.1E-12 64.7 5.2 56 4-62 307-362 (476)
130 1wf3_A GTP-binding protein; GT 98.6 9.3E-08 3.2E-12 60.4 5.4 53 4-60 81-134 (301)
131 3l2o_B F-box only protein 4; s 98.6 3.2E-08 1.1E-12 62.9 3.3 66 2-69 203-274 (312)
132 2wjg_A FEOB, ferrous iron tran 98.6 1.5E-08 5.2E-13 58.7 1.4 50 4-60 78-129 (188)
133 3pqc_A Probable GTP-binding pr 98.5 7.9E-08 2.7E-12 55.7 3.9 50 4-60 96-150 (195)
134 2hjg_A GTP-binding protein ENG 98.5 2.9E-07 1E-11 60.4 5.4 52 5-61 253-304 (436)
135 3qq5_A Small GTP-binding prote 98.4 5E-07 1.7E-11 59.6 5.7 50 5-61 109-158 (423)
136 3b1v_A Ferrous iron uptake tra 98.4 1.3E-07 4.4E-12 59.0 2.2 50 3-59 72-123 (272)
137 3h2y_A GTPase family protein; 98.4 1.5E-07 5.1E-12 60.9 2.5 50 3-59 63-112 (368)
138 3a1s_A Iron(II) transport prot 98.4 1.6E-07 5.6E-12 58.0 2.6 64 4-73 76-144 (258)
139 4dhe_A Probable GTP-binding pr 98.3 2.1E-07 7.2E-12 55.3 2.3 52 5-61 108-162 (223)
140 3i8s_A Ferrous iron transport 98.3 3.3E-07 1.1E-11 56.9 3.1 46 9-60 84-129 (274)
141 4dcu_A GTP-binding protein ENG 98.3 1.3E-06 4.5E-11 57.6 5.6 52 6-62 274-325 (456)
142 3geh_A MNME, tRNA modification 98.3 1.6E-06 5.5E-11 57.7 5.9 50 5-61 299-348 (462)
143 3iby_A Ferrous iron transport 98.3 2.1E-07 7.3E-12 57.4 1.5 58 9-72 82-143 (256)
144 2qtf_A Protein HFLX, GTP-bindi 98.3 2.5E-06 8.7E-11 55.2 6.5 52 6-58 254-307 (364)
145 1g7s_A Translation initiation 98.2 2.4E-06 8.3E-11 58.4 6.1 48 2-57 86-136 (594)
146 1h65_A Chloroplast outer envel 98.2 1E-06 3.5E-11 54.4 3.8 50 9-59 118-170 (270)
147 3sjy_A Translation initiation 98.2 1E-06 3.5E-11 57.3 4.0 53 5-60 94-146 (403)
148 1jny_A EF-1-alpha, elongation 98.2 3.9E-07 1.3E-11 59.9 1.9 52 4-57 102-158 (435)
149 3def_A T7I23.11 protein; chlor 98.2 1.1E-06 3.7E-11 54.1 3.7 48 10-58 116-166 (262)
150 1xzp_A Probable tRNA modificat 98.2 2.3E-06 7.7E-11 57.3 5.5 48 4-58 318-365 (482)
151 1mky_A Probable GTP-binding pr 98.2 1.9E-06 6.6E-11 56.6 4.4 47 4-57 76-124 (439)
152 3t34_A Dynamin-related protein 98.2 1.4E-06 4.9E-11 55.8 3.7 57 3-62 166-222 (360)
153 1r5b_A Eukaryotic peptide chai 98.2 7.2E-07 2.4E-11 59.2 2.3 53 4-57 139-195 (467)
154 2hjg_A GTP-binding protein ENG 98.2 2.1E-06 7.1E-11 56.4 4.3 50 4-58 77-126 (436)
155 2ywe_A GTP-binding protein LEP 98.1 7.5E-06 2.6E-10 56.1 6.4 50 5-59 92-141 (600)
156 3cb4_D GTP-binding protein LEP 98.1 3.7E-06 1.3E-10 57.6 4.8 50 5-59 90-139 (599)
157 2qag_A Septin-2, protein NEDD5 98.1 3.7E-07 1.2E-11 58.9 -0.5 45 15-63 148-194 (361)
158 3lxx_A GTPase IMAP family memb 98.0 1.9E-06 6.6E-11 52.1 2.4 55 5-62 108-164 (239)
159 3ec1_A YQEH GTPase; atnos1, at 98.0 9E-07 3.1E-11 57.3 0.9 48 4-58 66-113 (369)
160 2xtp_A GTPase IMAP family memb 98.0 9.7E-06 3.3E-10 49.5 5.2 52 6-58 102-154 (260)
161 2qpt_A EH domain-containing pr 98.0 1.2E-06 4E-11 59.4 1.2 58 5-66 184-241 (550)
162 3tr5_A RF-3, peptide chain rel 98.0 1.8E-05 6E-10 53.5 6.3 50 4-58 100-149 (528)
163 2aka_B Dynamin-1; fusion prote 97.9 8.2E-06 2.8E-10 50.5 3.9 53 4-60 156-209 (299)
164 3lxw_A GTPase IMAP family memb 97.9 1.9E-05 6.4E-10 48.3 4.6 50 9-58 104-154 (247)
165 3izy_P Translation initiation 97.9 6.8E-06 2.3E-10 55.7 2.7 51 2-57 68-118 (537)
166 1n0u_A EF-2, elongation factor 97.9 1.1E-05 3.6E-10 57.1 3.5 48 4-56 116-163 (842)
167 1s0u_A EIF-2-gamma, translatio 97.8 8.1E-05 2.8E-09 48.5 7.3 45 9-59 103-151 (408)
168 2j69_A Bacterial dynamin-like 97.8 1.4E-05 4.8E-10 55.4 3.8 51 4-58 195-245 (695)
169 3k53_A Ferrous iron transport 97.8 9.2E-06 3.1E-10 50.1 2.7 44 9-57 80-123 (271)
170 3p26_A Elongation factor 1 alp 97.8 4.5E-05 1.5E-09 50.7 6.0 54 4-59 129-187 (483)
171 1zo1_I IF2, translation initia 97.8 4.7E-05 1.6E-09 51.3 6.1 48 2-57 67-117 (501)
172 4dcu_A GTP-binding protein ENG 97.8 1.2E-05 4.1E-10 53.1 3.0 51 3-58 96-146 (456)
173 1puj_A YLQF, conserved hypothe 97.8 1.1E-05 3.8E-10 50.5 2.7 44 6-58 20-65 (282)
174 1zun_B Sulfate adenylate trans 97.8 6.1E-05 2.1E-09 49.5 6.0 49 5-57 123-171 (434)
175 2h5e_A Peptide chain release f 97.7 3.9E-05 1.3E-09 51.8 4.7 51 4-59 100-150 (529)
176 1dar_A EF-G, elongation factor 97.7 4.5E-05 1.5E-09 52.9 5.1 50 4-58 95-144 (691)
177 2c78_A Elongation factor TU-A; 97.7 2.9E-05 1E-09 50.5 3.8 48 5-57 94-142 (405)
178 1ega_A Protein (GTP-binding pr 97.7 5.3E-05 1.8E-09 47.6 4.7 48 4-57 83-130 (301)
179 1d2e_A Elongation factor TU (E 97.7 7.2E-05 2.5E-09 48.6 5.2 49 4-57 84-133 (397)
180 1mky_A Probable GTP-binding pr 97.7 6.3E-05 2.2E-09 49.4 4.9 51 5-60 259-309 (439)
181 3j2k_7 ERF3, eukaryotic polype 97.7 2.4E-05 8.2E-10 51.6 2.9 52 5-57 114-169 (439)
182 1f60_A Elongation factor EEF1A 97.7 1.2E-05 4.3E-10 53.2 1.4 49 5-57 104-159 (458)
183 2xex_A Elongation factor G; GT 97.6 7.7E-05 2.6E-09 51.8 5.1 50 4-58 93-142 (693)
184 1wb1_A Translation elongation 97.6 7.6E-05 2.6E-09 49.8 4.8 46 5-58 92-140 (482)
185 3izq_1 HBS1P, elongation facto 97.6 2.8E-05 9.4E-10 53.3 2.7 54 4-58 263-320 (611)
186 1jwy_B Dynamin A GTPase domain 97.6 3E-05 1E-09 48.3 2.5 53 4-60 162-215 (315)
187 2qag_C Septin-7; cell cycle, c 97.6 3.3E-05 1.1E-09 50.9 2.7 56 2-62 129-186 (418)
188 2rdo_7 EF-G, elongation factor 97.6 0.00011 3.7E-09 51.1 5.3 50 4-58 100-149 (704)
189 1kk1_A EIF2gamma; initiation o 97.5 0.00015 5.3E-09 47.2 5.2 45 9-59 105-153 (410)
190 2elf_A Protein translation elo 97.5 5.2E-05 1.8E-09 49.1 2.9 48 5-59 79-128 (370)
191 1udx_A The GTP-binding protein 97.4 0.00022 7.7E-09 46.9 4.5 49 9-58 234-284 (416)
192 3avx_A Elongation factor TS, e 97.3 0.00028 9.6E-09 52.0 4.7 48 5-57 378-426 (1289)
193 1t9h_A YLOQ, probable GTPase E 97.2 0.00062 2.1E-08 43.2 5.3 47 9-58 85-132 (307)
194 1wxq_A GTP-binding protein; st 97.1 0.00038 1.3E-08 45.5 3.4 18 5-23 97-114 (397)
195 3t5d_A Septin-7; GTP-binding p 97.0 0.00051 1.7E-08 42.3 3.4 46 10-59 115-160 (274)
196 2x2e_A Dynamin-1; nitration, h 96.9 0.00056 1.9E-08 43.7 2.9 54 4-60 161-214 (353)
197 2dy1_A Elongation factor G; tr 96.9 0.0017 5.7E-08 45.0 5.0 48 4-56 92-139 (665)
198 2rcn_A Probable GTPase ENGC; Y 96.8 0.0029 9.8E-08 41.0 5.4 47 9-59 129-176 (358)
199 3cnl_A YLQF, putative uncharac 96.8 0.00015 5.2E-09 44.9 -0.7 44 6-58 18-61 (262)
200 1pui_A ENGB, probable GTP-bind 96.6 0.0032 1.1E-07 36.7 4.3 43 9-57 107-151 (210)
201 3mca_A HBS1, elongation factor 96.5 7.2E-05 2.5E-09 51.1 -3.9 46 4-57 273-329 (592)
202 1yrb_A ATP(GTP)binding protein 95.6 0.0056 1.9E-07 36.9 1.9 48 9-59 137-187 (262)
203 3p32_A Probable GTPase RV1496/ 95.4 0.00086 2.9E-08 42.9 -2.3 42 9-58 191-232 (355)
204 2p67_A LAO/AO transport system 95.0 0.0034 1.2E-07 40.0 -0.3 45 9-61 168-212 (341)
205 2wsm_A Hydrogenase expression/ 94.9 0.016 5.5E-07 33.9 2.5 41 9-57 128-168 (221)
206 3vqt_A RF-3, peptide chain rel 94.6 0.12 4.2E-06 35.0 6.4 46 9-58 122-167 (548)
207 2qnr_A Septin-2, protein NEDD5 94.4 0.005 1.7E-07 38.6 -0.7 19 42-60 154-172 (301)
208 3zvr_A Dynamin-1; hydrolase, D 93.7 0.1 3.5E-06 37.0 4.7 49 9-60 186-234 (772)
209 2www_A Methylmalonic aciduria 92.9 0.078 2.7E-06 33.9 2.9 41 9-57 186-226 (349)
210 4fn5_A EF-G 1, elongation fact 92.6 0.21 7.1E-06 34.8 4.9 45 9-57 107-151 (709)
211 3ea0_A ATPase, para family; al 90.0 1.8 6.3E-05 25.3 8.0 61 9-70 139-199 (245)
212 3j25_A Tetracycline resistance 89.8 0.18 6.2E-06 34.8 2.3 46 9-58 89-134 (638)
213 4a9a_A Ribosome-interacting GT 86.1 0.84 2.9E-05 29.7 3.6 48 9-57 148-196 (376)
214 2hf9_A Probable hydrogenase ni 83.0 0.27 9.2E-06 28.7 0.2 15 44-58 165-179 (226)
215 1jal_A YCHF protein; nucleotid 82.9 1.5 5.2E-05 28.4 3.7 16 6-22 93-108 (363)
216 4dzz_A Plasmid partitioning pr 80.9 5.5 0.00019 22.5 5.4 46 9-56 96-143 (206)
217 2qm8_A GTPase/ATPase; G protei 77.2 1.2 4.1E-05 28.2 1.9 41 9-57 167-207 (337)
218 3k9g_A PF-32 protein; ssgcid, 73.5 12 0.00041 22.3 7.2 44 9-54 165-208 (267)
219 3end_A Light-independent proto 73.3 13 0.00045 22.7 7.7 46 9-55 178-225 (307)
220 2ohf_A Protein OLA1, GTP-bindi 71.0 1.4 4.7E-05 29.0 1.0 23 5-28 112-134 (396)
221 3cwq_A Para family chromosome 63.8 19 0.00064 20.8 6.1 46 9-57 89-134 (209)
222 2dby_A GTP-binding protein; GD 61.0 12 0.00042 24.1 4.0 16 6-22 96-111 (368)
223 1zpw_X Hypothetical protein TT 60.2 16 0.00054 18.7 3.7 19 13-31 5-23 (90)
224 2xzm_U Ribosomal protein L7AE 56.6 9.3 0.00032 21.0 2.5 40 10-55 40-79 (126)
225 1wcv_1 SOJ, segregation protei 56.4 29 0.00098 20.5 6.2 47 9-56 132-182 (257)
226 2oze_A ORF delta'; para, walke 55.7 31 0.0011 20.8 5.6 48 9-57 175-226 (298)
227 2ivy_A Hypothetical protein SS 55.6 21 0.00071 18.7 3.7 20 13-32 4-23 (101)
228 2fz5_A Flavodoxin; alpha/beta 54.0 20 0.00068 18.8 3.6 43 9-52 45-89 (137)
229 3q9l_A Septum site-determining 53.7 31 0.0011 20.1 4.9 46 9-55 134-185 (260)
230 3dz1_A Dihydrodipicolinate syn 53.3 14 0.00049 23.1 3.3 46 10-56 102-151 (313)
231 2ark_A Flavodoxin; FMN, struct 52.4 25 0.00087 19.8 4.0 44 9-52 51-97 (188)
232 2vzf_A NADH-dependent FMN redu 50.7 12 0.0004 21.5 2.4 43 9-51 68-110 (197)
233 3exc_X Uncharacterized protein 49.8 26 0.00088 18.0 3.9 20 13-32 5-24 (91)
234 1uoz_A Putative cellulase; hyd 48.2 27 0.00092 22.4 3.9 39 10-49 89-137 (315)
235 2yxb_A Coenzyme B12-dependent 47.6 36 0.0012 19.1 4.7 40 10-51 69-108 (161)
236 3rl5_A Metallophosphoesterase 47.5 11 0.00037 23.7 2.0 44 9-55 78-122 (296)
237 2j37_W Signal recognition part 47.4 33 0.0011 23.1 4.5 41 10-57 213-254 (504)
238 3k1y_A Oxidoreductase; structu 46.2 27 0.00091 20.2 3.5 43 9-51 84-126 (191)
239 1bif_A 6-phosphofructo-2-kinas 45.8 37 0.0013 22.3 4.4 34 4-39 115-148 (469)
240 4h7p_A Malate dehydrogenase; s 45.7 30 0.001 22.1 3.9 48 7-55 98-155 (345)
241 3sop_A Neuronal-specific septi 45.4 26 0.00088 21.4 3.5 43 10-58 111-155 (270)
242 2wkj_A N-acetylneuraminate lya 45.4 29 0.00099 21.6 3.7 40 10-50 106-145 (303)
243 1ccw_A Protein (glutamate muta 44.8 37 0.0013 18.4 4.1 40 10-51 54-93 (137)
244 3j21_Z 50S ribosomal protein L 44.1 33 0.0011 17.6 4.6 41 10-57 31-72 (99)
245 3kjh_A CO dehydrogenase/acetyl 43.3 46 0.0016 19.1 5.5 43 9-54 152-194 (254)
246 3eb2_A Putative dihydrodipicol 42.7 51 0.0017 20.5 4.6 40 9-50 98-137 (300)
247 4hs4_A Chromate reductase; tri 42.6 40 0.0014 19.5 3.9 44 9-52 72-118 (199)
248 3jyw_G 60S ribosomal protein L 42.5 17 0.00059 19.6 2.1 41 10-56 41-81 (113)
249 3p7m_A Malate dehydrogenase; p 41.9 39 0.0013 21.3 4.0 48 6-55 70-127 (321)
250 3ro3_B Minsc, peptide of prote 41.8 17 0.00058 13.7 1.7 13 26-38 7-19 (22)
251 2yvt_A Hypothetical protein AQ 41.4 41 0.0014 19.6 3.9 18 9-26 31-48 (260)
252 4e6n_A Metallophosphoesterase; 41.4 42 0.0014 22.3 4.1 29 16-44 300-328 (427)
253 1uf3_A Hypothetical protein TT 40.5 46 0.0016 18.7 3.9 42 10-55 32-75 (228)
254 1t0i_A YLR011WP; FMN binding p 40.5 37 0.0013 19.0 3.5 42 9-51 83-124 (191)
255 5nul_A Flavodoxin; electron tr 40.3 41 0.0014 17.7 4.0 43 9-52 44-88 (138)
256 1oju_A MDH, malate dehydrogena 40.2 42 0.0014 20.9 3.9 48 6-55 66-123 (294)
257 3b4u_A Dihydrodipicolinate syn 39.7 31 0.0011 21.4 3.2 47 9-56 97-150 (294)
258 3m5v_A DHDPS, dihydrodipicolin 39.6 45 0.0016 20.7 4.0 46 9-56 102-151 (301)
259 3tak_A DHDPS, dihydrodipicolin 39.6 47 0.0016 20.5 4.0 38 10-49 96-133 (291)
260 2ph1_A Nucleotide-binding prot 39.4 59 0.002 19.2 4.9 42 10-55 152-194 (262)
261 3gfs_A FMN-dependent NADPH-azo 39.4 11 0.00037 21.1 1.0 43 9-51 62-104 (174)
262 3qze_A DHDPS, dihydrodipicolin 39.3 47 0.0016 20.8 4.0 46 9-56 117-166 (314)
263 2pd2_A Hypothetical protein ST 39.1 40 0.0014 17.2 5.2 33 16-49 3-35 (108)
264 3l21_A DHDPS, dihydrodipicolin 38.8 46 0.0016 20.7 3.9 46 9-56 109-158 (304)
265 2vc6_A MOSA, dihydrodipicolina 38.6 50 0.0017 20.4 4.0 46 9-56 94-143 (292)
266 1dfm_A Endonuclease bglii; res 38.6 63 0.0022 19.7 4.3 35 23-57 142-176 (223)
267 3nep_X Malate dehydrogenase; h 38.6 47 0.0016 20.9 3.9 48 6-55 66-123 (314)
268 3flu_A DHDPS, dihydrodipicolin 38.5 50 0.0017 20.4 4.0 46 9-56 101-150 (297)
269 2ehh_A DHDPS, dihydrodipicolin 38.5 51 0.0018 20.3 4.1 46 9-56 94-143 (294)
270 2yxg_A DHDPS, dihydrodipicolin 38.2 51 0.0017 20.3 4.0 38 10-49 95-132 (289)
271 3daq_A DHDPS, dihydrodipicolin 38.1 42 0.0014 20.7 3.7 45 10-56 97-145 (292)
272 1w3i_A EDA, 2-keto-3-deoxy glu 37.7 55 0.0019 20.2 4.1 39 9-49 90-129 (293)
273 3jte_A Response regulator rece 37.6 43 0.0015 17.2 4.7 40 10-54 49-88 (143)
274 1xky_A Dihydrodipicolinate syn 37.6 53 0.0018 20.4 4.0 39 9-49 106-144 (301)
275 2a5l_A Trp repressor binding p 37.1 54 0.0018 18.3 3.8 45 9-53 70-118 (200)
276 3cpr_A Dihydrodipicolinate syn 37.0 56 0.0019 20.3 4.1 46 9-56 110-159 (304)
277 3si9_A DHDPS, dihydrodipicolin 36.9 53 0.0018 20.6 4.0 46 9-56 116-165 (315)
278 1o5k_A DHDPS, dihydrodipicolin 36.9 55 0.0019 20.4 4.0 45 10-56 107-155 (306)
279 2ojp_A DHDPS, dihydrodipicolin 36.6 55 0.0019 20.2 4.0 39 9-49 95-133 (292)
280 3hhp_A Malate dehydrogenase; M 36.4 56 0.0019 20.5 4.0 47 7-55 67-123 (312)
281 3ezx_A MMCP 1, monomethylamine 35.9 68 0.0023 18.9 4.9 44 10-53 143-187 (215)
282 3tl2_A Malate dehydrogenase; c 35.4 57 0.002 20.5 4.0 48 6-55 75-132 (315)
283 2q9u_A A-type flavoprotein; fl 35.3 58 0.002 20.6 4.1 44 9-52 306-350 (414)
284 1rtt_A Conserved hypothetical 34.4 28 0.00094 19.7 2.2 44 9-52 71-117 (193)
285 2d4a_B Malate dehydrogenase; a 34.0 74 0.0025 19.8 4.3 46 7-54 65-120 (308)
286 3u7r_A NADPH-dependent FMN red 33.7 42 0.0014 19.4 3.0 44 9-52 66-113 (190)
287 2pjd_A Ribosomal RNA small sub 33.4 87 0.003 19.4 4.9 41 10-54 76-116 (343)
288 2v9d_A YAGE; dihydrodipicolini 33.4 64 0.0022 20.5 4.0 38 10-49 126-163 (343)
289 2nuw_A 2-keto-3-deoxygluconate 33.0 54 0.0018 20.2 3.5 39 9-49 90-129 (288)
290 1y80_A Predicted cobalamin bin 33.0 72 0.0025 18.4 4.5 42 10-53 139-181 (210)
291 2r91_A 2-keto-3-deoxy-(6-phosp 32.4 54 0.0019 20.1 3.5 39 9-49 89-128 (286)
292 2i0x_A Hypothetical protein PF 32.4 43 0.0015 16.9 2.5 9 14-22 3-11 (85)
293 7mdh_A Protein (malate dehydro 32.1 84 0.0029 20.4 4.4 47 9-55 107-163 (375)
294 2rfg_A Dihydrodipicolinate syn 31.8 56 0.0019 20.2 3.5 38 10-49 95-132 (297)
295 2qag_B Septin-6, protein NEDD5 31.6 61 0.0021 21.5 3.7 20 42-61 175-194 (427)
296 1rli_A Trp repressor binding p 31.6 62 0.0021 17.8 3.4 28 9-36 70-97 (184)
297 2r8w_A AGR_C_1641P; APC7498, d 31.5 55 0.0019 20.7 3.4 38 10-49 129-166 (332)
298 3gvi_A Malate dehydrogenase; N 31.5 85 0.0029 19.8 4.3 48 6-55 72-129 (324)
299 3hxl_A Uncharacterized protein 31.5 98 0.0033 20.6 4.7 38 15-53 202-239 (446)
300 3oq2_A Crispr-associated prote 31.4 60 0.0021 16.9 3.5 11 13-23 9-19 (103)
301 3gv0_A Transcriptional regulat 31.3 73 0.0025 18.7 3.9 36 9-54 65-100 (288)
302 3d0c_A Dihydrodipicolinate syn 31.2 57 0.0019 20.4 3.4 40 9-50 105-144 (314)
303 4es1_A BH0342 protein; ferredo 30.9 62 0.0021 16.9 3.7 11 13-23 6-16 (100)
304 3svl_A Protein YIEF; E. coli C 30.8 78 0.0027 18.1 4.0 44 9-52 71-117 (193)
305 1f6k_A N-acetylneuraminate lya 30.7 56 0.0019 20.1 3.3 38 10-49 99-136 (293)
306 2ewd_A Lactate dehydrogenase,; 30.6 93 0.0032 19.2 4.3 46 9-55 71-126 (317)
307 3e96_A Dihydrodipicolinate syn 30.6 50 0.0017 20.7 3.1 45 10-56 106-150 (316)
308 1sqs_A Conserved hypothetical 30.6 70 0.0024 18.8 3.7 43 9-51 78-124 (242)
309 2lbw_A H/ACA ribonucleoprotein 30.6 15 0.0005 19.9 0.6 40 10-55 36-75 (121)
310 2v6b_A L-LDH, L-lactate dehydr 30.3 74 0.0025 19.6 3.9 47 7-55 65-121 (304)
311 1g3q_A MIND ATPase, cell divis 30.3 80 0.0027 18.0 7.1 46 9-57 132-177 (237)
312 3hdv_A Response regulator; PSI 30.2 59 0.002 16.5 3.8 39 12-54 54-92 (136)
313 1hyq_A MIND, cell division inh 30.2 85 0.0029 18.3 5.3 45 9-56 131-175 (263)
314 3hcw_A Maltose operon transcri 30.0 59 0.002 19.3 3.3 37 9-55 67-103 (295)
315 2fcr_A Flavodoxin; electron tr 29.7 72 0.0025 17.6 3.5 43 9-51 44-92 (173)
316 3v7e_A Ribosome-associated pro 29.7 9.7 0.00033 19.1 -0.2 14 42-55 52-65 (82)
317 3f6c_A Positive transcription 29.5 60 0.002 16.3 3.9 40 11-55 47-86 (134)
318 3kcn_A Adenylate cyclase homol 29.5 65 0.0022 16.8 3.5 38 12-54 50-87 (151)
319 3rui_B Autophagy-related prote 29.4 46 0.0016 18.0 2.5 36 21-56 8-44 (118)
320 1qkk_A DCTD, C4-dicarboxylate 29.4 66 0.0023 16.8 4.0 39 11-54 48-86 (155)
321 4hhu_A OR280; engineered prote 29.3 77 0.0026 17.5 4.9 45 9-54 80-125 (170)
322 2hmc_A AGR_L_411P, dihydrodipi 29.3 68 0.0023 20.5 3.6 39 10-50 118-158 (344)
323 3na8_A Putative dihydrodipicol 29.3 64 0.0022 20.2 3.4 46 9-56 118-167 (315)
324 2qsj_A DNA-binding response re 29.0 67 0.0023 16.7 3.3 39 11-54 51-89 (154)
325 1ldn_A L-lactate dehydrogenase 29.0 94 0.0032 19.3 4.2 46 7-54 72-127 (316)
326 3fvw_A Putative NAD(P)H-depend 28.6 65 0.0022 18.3 3.2 46 9-54 66-121 (192)
327 2xmo_A LMO2642 protein; phosph 28.6 47 0.0016 21.3 2.8 42 10-55 92-137 (443)
328 5mdh_A Malate dehydrogenase; o 28.5 91 0.0031 19.7 4.1 47 9-55 78-134 (333)
329 2zki_A 199AA long hypothetical 28.4 72 0.0025 17.8 3.4 45 9-53 69-117 (199)
330 2pcq_A Putative dihydrodipicol 28.3 39 0.0013 20.8 2.3 36 10-49 88-124 (283)
331 3eul_A Possible nitrate/nitrit 28.1 69 0.0024 16.6 4.0 40 10-54 61-100 (152)
332 3dmg_A Probable ribosomal RNA 28.1 85 0.0029 20.1 3.9 37 19-55 108-144 (381)
333 3hdg_A Uncharacterized protein 27.8 64 0.0022 16.3 2.9 39 11-54 52-90 (137)
334 2ale_A SNU13, NHP2/L7AE family 27.7 10 0.00035 21.0 -0.4 39 11-55 49-87 (134)
335 3sf4_D Protein inscuteable hom 27.7 52 0.0018 15.1 3.7 29 27-55 9-37 (52)
336 1eo6_A GATE-16, golgi-associat 27.6 55 0.0019 17.6 2.6 33 23-55 8-41 (117)
337 2zqz_A L-LDH, L-lactate dehydr 27.6 71 0.0024 20.1 3.4 47 7-55 74-130 (326)
338 3hzh_A Chemotaxis response reg 27.2 75 0.0026 16.7 3.4 39 11-54 84-122 (157)
339 1ez4_A Lactate dehydrogenase; 26.9 80 0.0027 19.7 3.6 47 7-55 70-126 (318)
340 2hjr_A Malate dehydrogenase; m 26.8 1.1E+02 0.0039 19.0 4.3 47 7-55 80-136 (328)
341 2m1z_A LMO0427 protein; homolo 26.7 30 0.001 18.5 1.4 24 2-26 50-75 (106)
342 2zjd_A Microtubule-associated 26.7 57 0.002 18.0 2.6 32 23-54 15-47 (130)
343 1y6j_A L-lactate dehydrogenase 26.6 1E+02 0.0034 19.2 4.0 47 7-55 72-128 (318)
344 3huu_A Transcription regulator 26.6 69 0.0024 19.0 3.2 37 9-55 82-118 (305)
345 2ohh_A Type A flavoprotein FPR 26.2 41 0.0014 21.1 2.2 43 9-51 306-351 (404)
346 2kkm_A Translation machinery-a 26.2 32 0.0011 19.3 1.5 19 15-33 100-118 (144)
347 3bfv_A CAPA1, CAPB2, membrane 26.0 1.1E+02 0.0039 18.4 4.6 45 9-57 213-258 (271)
348 3b6i_A Flavoprotein WRBA; flav 25.8 52 0.0018 18.4 2.4 44 9-52 67-114 (198)
349 2r2q_A Gamma-aminobutyric acid 25.8 63 0.0021 17.1 2.6 29 23-51 7-35 (110)
350 2bog_X Endoglucanase E-2; hydr 25.8 79 0.0027 19.9 3.3 37 12-49 67-113 (286)
351 3k4h_A Putative transcriptiona 25.4 68 0.0023 18.8 3.0 37 9-55 68-104 (292)
352 3cg0_A Response regulator rece 25.3 75 0.0026 16.0 4.3 38 11-54 55-93 (140)
353 4e7p_A Response regulator; DNA 25.2 80 0.0027 16.4 4.0 39 11-54 67-105 (150)
354 4dad_A Putative pilus assembly 25.1 79 0.0027 16.2 5.2 40 10-54 67-106 (146)
355 3eqz_A Response regulator; str 25.0 74 0.0025 15.9 4.3 39 11-54 47-85 (135)
356 3h9d_A ATG8, microtubule-assoc 25.0 66 0.0023 17.4 2.6 34 23-56 11-45 (119)
357 4fe7_A Xylose operon regulator 24.7 1.3E+02 0.0045 18.9 4.4 34 9-54 75-108 (412)
358 3h5d_A DHDPS, dihydrodipicolin 24.7 1.1E+02 0.0038 19.1 3.9 45 10-56 102-151 (311)
359 2i2x_B MTAC, methyltransferase 24.5 1.1E+02 0.0039 18.3 3.9 41 10-53 174-214 (258)
360 1ag9_A Flavodoxin; electron tr 24.5 97 0.0033 17.1 3.6 43 9-51 44-87 (175)
361 3ldh_A Lactate dehydrogenase; 24.5 1.2E+02 0.004 19.3 4.0 47 7-55 87-143 (330)
362 1obo_A Flavodoxin; electron tr 24.5 93 0.0032 16.9 3.3 44 9-52 45-89 (169)
363 1f4p_A Flavodoxin; electron tr 24.5 34 0.0012 18.2 1.4 43 9-51 46-92 (147)
364 2zay_A Response regulator rece 24.4 81 0.0028 16.2 4.2 41 10-54 52-93 (147)
365 3qk7_A Transcriptional regulat 24.2 91 0.0031 18.4 3.4 36 9-54 64-99 (294)
366 2v3c_C SRP54, signal recogniti 24.1 1.5E+02 0.0051 19.4 4.6 41 10-57 210-252 (432)
367 3snk_A Response regulator CHEY 23.7 82 0.0028 15.9 4.2 40 10-54 59-98 (135)
368 3m95_A Autophagy related prote 23.5 72 0.0025 17.5 2.6 34 23-56 16-50 (125)
369 3jy6_A Transcriptional regulat 23.5 1.2E+02 0.004 17.7 3.8 36 9-55 62-97 (276)
370 1t5b_A Acyl carrier protein ph 23.4 85 0.0029 17.4 3.0 29 9-37 85-113 (201)
371 1s2d_A Purine trans deoxyribos 23.3 1.1E+02 0.0038 17.3 4.4 37 9-50 80-116 (167)
372 2d3d_A VTS1 protein; RNA bindi 22.9 14 0.00049 19.2 -0.4 19 20-38 12-30 (88)
373 2i6t_A Ubiquitin-conjugating e 22.9 1.3E+02 0.0045 18.6 4.0 45 9-54 76-129 (303)
374 2q62_A ARSH; alpha/beta, flavo 22.6 76 0.0026 19.1 2.8 44 9-52 97-145 (247)
375 3s5o_A 4-hydroxy-2-oxoglutarat 22.5 1.5E+02 0.005 18.4 4.3 39 9-49 108-148 (307)
376 3pqe_A L-LDH, L-lactate dehydr 22.3 1.3E+02 0.0045 18.9 3.9 47 7-55 71-127 (326)
377 3eod_A Protein HNR; response r 22.2 86 0.0029 15.6 4.1 39 11-54 52-90 (130)
378 3iz5_f 60S ribosomal protein L 22.1 71 0.0024 17.0 2.3 15 42-56 67-82 (112)
379 2x0j_A Malate dehydrogenase; o 22.1 1.3E+02 0.0045 18.7 3.9 47 7-55 67-123 (294)
380 3ib7_A ICC protein; metallopho 22.0 66 0.0022 19.4 2.5 40 10-51 66-109 (330)
381 3kto_A Response regulator rece 22.0 91 0.0031 15.8 3.1 37 13-54 51-91 (136)
382 2vyc_A Biodegradative arginine 21.9 1.9E+02 0.0066 20.4 5.0 43 11-54 54-96 (755)
383 3cpq_A 50S ribosomal protein L 21.7 22 0.00076 18.7 0.2 38 11-55 38-76 (110)
384 4ehx_A Tetraacyldisaccharide 4 21.5 42 0.0014 21.1 1.5 12 42-53 34-45 (315)
385 3v7q_A Probable ribosomal prot 21.5 33 0.0011 17.7 0.9 14 42-55 60-73 (101)
386 3hv2_A Response regulator/HD d 21.4 99 0.0034 16.1 4.4 40 10-54 58-97 (153)
387 2c1c_A Carboxypeptidase B; ins 21.2 1E+02 0.0036 19.0 3.3 22 19-40 2-23 (312)
388 3a5f_A Dihydrodipicolinate syn 20.9 57 0.002 20.1 2.0 38 10-49 96-133 (291)
389 3cz5_A Two-component response 20.9 1E+02 0.0035 16.0 4.2 39 11-54 52-90 (153)
390 3fkr_A L-2-keto-3-deoxyarabona 20.9 88 0.003 19.5 2.9 39 9-49 102-143 (309)
391 3r6w_A FMN-dependent NADH-azor 20.9 1.3E+02 0.0044 17.1 3.7 28 9-36 86-113 (212)
392 4a17_F RPL7A, 60S ribosomal pr 20.6 62 0.0021 20.1 2.1 41 9-55 139-179 (255)
393 2xxj_A L-LDH, L-lactate dehydr 20.3 1.5E+02 0.005 18.4 3.8 47 7-55 65-121 (310)
394 3h5t_A Transcriptional regulat 20.1 97 0.0033 19.0 3.0 13 42-54 150-162 (366)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.82 E-value=8.7e-21 Score=115.35 Aligned_cols=70 Identities=27% Similarity=0.524 Sum_probs=61.1
Q ss_pred CccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchHHHHhccCc
Q 038356 1 VINSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMSIFQSLSGL 71 (78)
Q Consensus 1 sl~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~~~~~~~~~ 71 (78)
++++.|| ++++++++|||+++++||+++..|+..+.+..++++|++|||||+||.+.|.|+...++..+.
T Consensus 77 ~l~~~~~-~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~ 146 (216)
T 4dkx_A 77 SLIPSYI-RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK 146 (216)
T ss_dssp GGHHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred hHHHHHh-ccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH
Confidence 3577899 999999999999999999999999999988877889999999999999889888655544333
No 2
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=6.6e-17 Score=97.80 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=53.1
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIF 65 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~ 65 (78)
+++.|| ++++++++|||+++++||+.+..|...+.+.. .+++|++|||||+||.+.+.+....
T Consensus 104 l~~~~~-~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e 167 (211)
T 2g3y_A 104 LHDHCM-QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE 167 (211)
T ss_dssp HHHCCC-CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHH
T ss_pred HHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHH
Confidence 346788 99999999999999999999999998887643 3579999999999998777776443
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.64 E-value=6.1e-16 Score=90.09 Aligned_cols=61 Identities=38% Similarity=0.857 Sum_probs=51.7
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.....++.|+++||||+|+.+.+.++.
T Consensus 73 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~ 133 (183)
T 2fu5_C 73 ITTAYY-RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSK 133 (183)
T ss_dssp -CCTTT-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCH
T ss_pred hHHHHH-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCH
Confidence 456788 9999999999999999999999999999887667899999999999987766653
No 4
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.62 E-value=6.6e-16 Score=91.51 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=52.7
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSI 64 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~ 64 (78)
+++.|| ++++++++|||+++++||+++..|...+.+.. .++.|+++||||+|+.+.+.+...
T Consensus 73 ~~~~~~-~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~ 135 (192)
T 2cjw_A 73 LHDHCM-QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVS 135 (192)
T ss_dssp TGGGHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHH
T ss_pred HHHhhc-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHH
Confidence 567788 99999999999999999999999998887653 357999999999999766666543
No 5
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.62 E-value=4.5e-16 Score=92.41 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=52.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
+++.|+ ++++++++|||+++++||+.+..|+.++..... .++|+++||||+|+.+.+.++.
T Consensus 89 ~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~ 150 (195)
T 3cbq_A 89 LRDHCL-QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL 150 (195)
T ss_dssp HHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCH
T ss_pred hHHHhh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCH
Confidence 345678 999999999999999999999999999877653 5799999999999987777653
No 6
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.61 E-value=1.5e-15 Score=87.01 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=47.4
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQ 66 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~ 66 (78)
+++.|+ ++++++++|||+++++||+.+..|+..+.+.. .++.|+++||||+|+.+.+.++....
T Consensus 65 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 129 (166)
T 3q72_A 65 LPGHCM-AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG 129 (166)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHH
T ss_pred hhhhhh-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHH
Confidence 456788 99999999999999999999999999987654 36899999999999988777764433
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.60 E-value=2.8e-15 Score=87.11 Aligned_cols=64 Identities=30% Similarity=0.310 Sum_probs=53.0
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCchHHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSMSIFQ 66 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~~~~~ 66 (78)
++..|+ +++|++++|||+++++||+.+..|+.++.+... .+.|+++||||+|+.+.+.+.....
T Consensus 70 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 134 (181)
T 3t5g_A 70 FPQTYS-IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEG 134 (181)
T ss_dssp CCGGGT-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred HHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHH
Confidence 467888 999999999999999999999999999876653 5799999999999987777764433
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=88.06 Aligned_cols=61 Identities=41% Similarity=0.745 Sum_probs=54.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||++++++|+.+..|+..+......+.|+++||||+|+.+.+.+..
T Consensus 81 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 141 (196)
T 3tkl_A 81 ITSSYY-RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY 141 (196)
T ss_dssp THHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH
T ss_pred hHHHHH-hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH
Confidence 346788 9999999999999999999999999999888767899999999999987776653
No 9
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.3e-15 Score=89.67 Aligned_cols=61 Identities=31% Similarity=0.642 Sum_probs=53.9
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchHH
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMSI 64 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~~ 64 (78)
+..|+ +++|++++|||++++++|+.+..|+..+.....++.|+++||||+|+.+.+.+...
T Consensus 89 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 149 (191)
T 3dz8_A 89 TTAYY-RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTE 149 (191)
T ss_dssp HHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred HHHHH-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence 45688 99999999999999999999999999998877678999999999999877666543
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=90.73 Aligned_cols=59 Identities=46% Similarity=0.802 Sum_probs=52.8
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++|+|||+++++||+.+..|+..+.+....+.|+++||||+|+.+.+.++
T Consensus 95 ~~~~~-~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~ 153 (201)
T 2hup_A 95 TQSYY-RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS 153 (201)
T ss_dssp HHHHH-TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC
T ss_pred HHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC
Confidence 45788 999999999999999999999999999988776789999999999998766655
No 11
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.59 E-value=1.8e-15 Score=90.93 Aligned_cols=54 Identities=24% Similarity=0.574 Sum_probs=49.4
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHH-HHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFEN-VSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
+++.|+ +++|++|+|||+++++||++ +..|+..+.+.. +++|+++||||+|+.+
T Consensus 91 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 91 VRPLCY-SDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 145 (214)
T ss_dssp TGGGGC-TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGG
T ss_pred HHHHHc-CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcc
Confidence 567889 99999999999999999999 699999998876 7899999999999975
No 12
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.58 E-value=1.5e-15 Score=87.19 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=52.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCchHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSMSIF 65 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~~~~ 65 (78)
+++.|+ +++|++++|||+++++||+.+..|+.++....+ ++.|+++||||+|+.+.+.++...
T Consensus 68 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 131 (169)
T 3q85_A 68 LQDHCL-QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE 131 (169)
T ss_dssp --CHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred hhhhhh-ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHH
Confidence 456678 999999999999999999999999999987764 589999999999998777666443
No 13
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.58 E-value=9.6e-15 Score=86.64 Aligned_cols=61 Identities=39% Similarity=0.744 Sum_probs=54.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.....++.|+++||||+|+.+.+.+..
T Consensus 73 ~~~~~~-~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 133 (206)
T 2bcg_Y 73 ITSSYY-RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY 133 (206)
T ss_dssp CCGGGG-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH
T ss_pred HHHHhc-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence 467789 9999999999999999999999999999887767899999999999987766653
No 14
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.58 E-value=3e-15 Score=88.07 Aligned_cols=61 Identities=51% Similarity=0.904 Sum_probs=53.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||++++++|+.+..|+..+.....++.|+++||||+|+.+.+.+..
T Consensus 86 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~ 146 (191)
T 2a5j_A 86 ITRSYY-RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKR 146 (191)
T ss_dssp CCHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH
T ss_pred hHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCH
Confidence 456788 9999999999999999999999999999887667899999999999977666653
No 15
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=86.11 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=50.7
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHH
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSI 64 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~ 64 (78)
++.|+ ++++++++|||+++++||+.+..|...+.+.. .++.|+++||||+|+.+.+.++..
T Consensus 71 ~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 132 (175)
T 2nzj_A 71 QESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132 (175)
T ss_dssp HHHTT-TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHH
T ss_pred HHhhc-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHH
Confidence 45678 99999999999999999999999999887653 357999999999999877776543
No 16
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=2e-15 Score=90.17 Aligned_cols=60 Identities=28% Similarity=0.619 Sum_probs=53.3
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
+..|+ +++|++++|||+++++||+.+..|+..+......+.|+++||||+|+.+.+.+..
T Consensus 92 ~~~~~-~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~ 151 (201)
T 2ew1_A 92 TQSYY-RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQ 151 (201)
T ss_dssp HGGGS-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCH
T ss_pred HHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence 46788 9999999999999999999999999999887767899999999999977666653
No 17
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.57 E-value=4.9e-15 Score=84.91 Aligned_cols=61 Identities=38% Similarity=0.793 Sum_probs=53.5
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||++++.+++.+..|+..+.....+..|+++||||+|+.+.+++..
T Consensus 71 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~ 131 (170)
T 1z0j_A 71 LAPMYY-RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME 131 (170)
T ss_dssp GTHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH
T ss_pred ccHhhC-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCH
Confidence 346778 9999999999999999999999999999887668899999999999987666653
No 18
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.57 E-value=7.8e-15 Score=85.01 Aligned_cols=60 Identities=35% Similarity=0.744 Sum_probs=53.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++++|||++++.+|+.+..|+..+.....++.|+++|+||+|+.+.+.+.
T Consensus 77 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~ 136 (181)
T 2efe_B 77 LAPMYY-RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT 136 (181)
T ss_dssp GTHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC
T ss_pred hhHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC
Confidence 346788 999999999999999999999999999988766789999999999998766654
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.57 E-value=8.7e-15 Score=84.58 Aligned_cols=61 Identities=36% Similarity=0.724 Sum_probs=53.4
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMSI 64 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~~ 64 (78)
++..|+ +++|++++|||++++++|+.+..|+..+.... ++.|+++||||+|+.+.+.+...
T Consensus 74 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 134 (181)
T 3tw8_B 74 ITSTYY-RGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETE 134 (181)
T ss_dssp CCGGGG-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHH
T ss_pred hHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHH
Confidence 456788 99999999999999999999999999998776 68999999999999876666533
No 20
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.57 E-value=6.9e-15 Score=86.26 Aligned_cols=60 Identities=35% Similarity=0.679 Sum_probs=53.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++++|||++++++|+.+..|+..+.....++.|+++||||+|+.+.+.+.
T Consensus 87 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 146 (189)
T 2gf9_A 87 ITTAYY-RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP 146 (189)
T ss_dssp SGGGGG-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC
T ss_pred hHHHhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCC
Confidence 456788 999999999999999999999999999988766789999999999998766654
No 21
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.57 E-value=2.6e-15 Score=87.38 Aligned_cols=63 Identities=29% Similarity=0.445 Sum_probs=53.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIF 65 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~ 65 (78)
+++.|+ +++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.+.+....
T Consensus 82 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~ 145 (183)
T 3kkq_A 82 MREQYM-RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQ 145 (183)
T ss_dssp SHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHH
T ss_pred HHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHH
Confidence 456788 99999999999999999999999999986643 4679999999999998877776443
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=7.3e-15 Score=85.06 Aligned_cols=61 Identities=36% Similarity=0.727 Sum_probs=52.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..
T Consensus 76 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 136 (180)
T 2g6b_A 76 VTHAYY-RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR 136 (180)
T ss_dssp ---CCG-GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH
T ss_pred HHHHHc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCH
Confidence 456788 9999999999999999999999999999887767899999999999987666553
No 23
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4e-15 Score=89.60 Aligned_cols=61 Identities=52% Similarity=0.977 Sum_probs=51.5
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++|+|||++++.+|+.+..|+..+......+.|+++||||+|+.+.+.++.
T Consensus 78 ~~~~~~-~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~ 138 (223)
T 3cpj_B 78 ITSAYY-RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT 138 (223)
T ss_dssp CCGGGT-TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH
T ss_pred hHHHHh-ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH
Confidence 567889 9999999999999999999999999999887667899999999999987666653
No 24
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.56 E-value=6.8e-15 Score=86.86 Aligned_cols=59 Identities=29% Similarity=0.479 Sum_probs=47.9
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCC-CCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD---SNIVIMMIGNKTDLKH-LPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~lvgnK~Dl~~-~~~v~ 62 (78)
+..|+ +++|++++|||++++.||+.+..|+..+..... .+.|+++||||+|+.+ .+.++
T Consensus 90 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~ 152 (208)
T 2yc2_C 90 ISQYW-NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR 152 (208)
T ss_dssp HSTTC-CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC
T ss_pred HHHHH-hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC
Confidence 46788 999999999999999999999999999988775 5899999999999987 66665
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.56 E-value=3.9e-15 Score=85.18 Aligned_cols=59 Identities=41% Similarity=0.724 Sum_probs=52.2
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++++|||++++++|+.+..|+..+.....+++|+++||||+|+.+.+.++
T Consensus 72 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~ 130 (170)
T 1r2q_A 72 APMYY-RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130 (170)
T ss_dssp HHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC
T ss_pred hHHhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC
Confidence 45678 999999999999999999999999999987766789999999999997666554
No 26
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=86.99 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=52.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIF 65 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~ 65 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.+.. ..++|+++||||+|+.+.+.+....
T Consensus 88 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 151 (201)
T 3oes_A 88 LPYSFI-IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVE 151 (201)
T ss_dssp CCGGGT-TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHH
T ss_pred HHHHHH-hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHH
Confidence 467888 99999999999999999999999999997764 3579999999999998777766443
No 27
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.56 E-value=5.2e-15 Score=86.80 Aligned_cols=61 Identities=26% Similarity=0.591 Sum_probs=53.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||+++++||+.+..|+.++.+.. ..+.|+++||||+|+.+.+.+..
T Consensus 86 ~~~~~~-~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~ 147 (189)
T 1z06_A 86 MVQHYY-RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT 147 (189)
T ss_dssp THHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH
T ss_pred hhHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH
Confidence 456788 99999999999999999999999999998775 46799999999999977666653
No 28
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=88.74 Aligned_cols=59 Identities=29% Similarity=0.453 Sum_probs=51.3
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeCCCCCCCCCchH
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA---DSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
..|+ ++++++++|||+++++||+.+..|+..+.+.. .++.|+++||||+|+.+.+.++.
T Consensus 86 ~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~ 147 (187)
T 3c5c_A 86 ERYL-NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK 147 (187)
T ss_dssp HHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCH
T ss_pred HHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCH
Confidence 4578 99999999999999999999999999997764 26799999999999987776653
No 29
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=89.74 Aligned_cols=60 Identities=42% Similarity=0.768 Sum_probs=47.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++++|||++++++|+.+..|+..+......+.|+++||||+|+.+.+.+.
T Consensus 98 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~ 157 (199)
T 3l0i_B 98 ITSSYY-RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD 157 (199)
T ss_dssp CSCC---CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCC
T ss_pred HHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCC
Confidence 456788 999999999999999999999999999988776789999999999997665443
No 30
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.55 E-value=9.3e-15 Score=86.43 Aligned_cols=59 Identities=32% Similarity=0.673 Sum_probs=52.7
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++++|||++++++|+.+..|+..+......+.|+++||||+|+.+.+.+.
T Consensus 74 ~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 132 (203)
T 1zbd_A 74 TTAYY-RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS 132 (203)
T ss_dssp HHTTG-GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC
T ss_pred HHHhh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccC
Confidence 45788 999999999999999999999999999987766789999999999998776665
No 31
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.55 E-value=4e-15 Score=85.39 Aligned_cols=60 Identities=35% Similarity=0.708 Sum_probs=51.7
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+++.|+ +++|++++|||+++++||+.+..|+..+.....++.|+++|+||+|+.+.+.++
T Consensus 71 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 130 (170)
T 1z08_A 71 LGPIYY-RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 130 (170)
T ss_dssp --CCSS-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC
T ss_pred hHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC
Confidence 456788 999999999999999999999999999877665679999999999997766655
No 32
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.55 E-value=1.5e-14 Score=86.47 Aligned_cols=64 Identities=31% Similarity=0.563 Sum_probs=52.7
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchHHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMSIFQ 66 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~~~~ 66 (78)
++..|+ +++|++++|||++++.||+.+..|+..+......+.|+++||||+|+.+.+.+.....
T Consensus 77 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 140 (218)
T 4djt_A 77 LKDVYY-IGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLV 140 (218)
T ss_dssp CCHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHH
T ss_pred HHHHHh-hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHH
Confidence 456788 9999999999999999999999999999887767799999999999987766665444
No 33
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.55 E-value=5.5e-15 Score=87.74 Aligned_cols=60 Identities=43% Similarity=0.776 Sum_probs=53.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++|+|||++++++|+.+..|+..+.....++.|+++||||+|+.+.+.++
T Consensus 90 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 149 (200)
T 2o52_A 90 VTRSYY-RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVT 149 (200)
T ss_dssp CCHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSC
T ss_pred HHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccC
Confidence 456788 999999999999999999999999999987766789999999999997666665
No 34
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=6.9e-15 Score=86.64 Aligned_cols=60 Identities=38% Similarity=0.784 Sum_probs=52.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++++|||++++++|+.+..|+..+.+...++.|+++||||+|+.+.+.+.
T Consensus 88 ~~~~~~-~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~ 147 (192)
T 2fg5_A 88 LAPMYY-RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP 147 (192)
T ss_dssp GTHHHH-TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC
T ss_pred hhHHhh-ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC
Confidence 356788 999999999999999999999999999988776789999999999997656554
No 35
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.54 E-value=6e-15 Score=85.91 Aligned_cols=60 Identities=45% Similarity=0.726 Sum_probs=52.7
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
+..|+ +++|++++|||++++++|+.+..|+..+......+.|+++||||+|+.+.+.++.
T Consensus 76 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 135 (186)
T 2bme_A 76 TRSYY-RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF 135 (186)
T ss_dssp HHTTS-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH
T ss_pred HHHHH-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH
Confidence 45688 9999999999999999999999999998877667899999999999976666653
No 36
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.53 E-value=1e-14 Score=84.58 Aligned_cols=58 Identities=14% Similarity=0.290 Sum_probs=47.2
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhh---cCCCCeEEEEeeCCCCC--CCCCch
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDH---ADSNIVIMMIGNKTDLK--HLPTSM 62 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~~lvgnK~Dl~--~~~~v~ 62 (78)
..|+ +++|++++|||+++++||+.+..|++.+... ..+++|+++||||+|+. ..+.++
T Consensus 67 ~~~~-~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~ 129 (178)
T 2iwr_A 67 AKFS-GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG 129 (178)
T ss_dssp HHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSC
T ss_pred hHHH-HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCC
Confidence 4578 9999999999999999999999976666443 33689999999999993 445555
No 37
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.53 E-value=1e-14 Score=84.18 Aligned_cols=59 Identities=44% Similarity=0.834 Sum_probs=52.3
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++++|||++++.+++.+..|+..+.....++.|+++||||+|+.+.+.+.
T Consensus 81 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 139 (179)
T 1z0f_A 81 TRSYY-RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 139 (179)
T ss_dssp HHHHH-HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC
T ss_pred HHHHh-ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC
Confidence 45678 999999999999999999999999999988776789999999999997666654
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=1e-14 Score=83.42 Aligned_cols=59 Identities=39% Similarity=0.696 Sum_probs=51.7
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC---CCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL---PTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~---~~v~ 62 (78)
+..|+ +++|++++|||++++++++.+..|+..+.....++.|+++||||+|+.+. +.+.
T Consensus 69 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~ 130 (170)
T 1ek0_A 69 APXYY-RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVA 130 (170)
T ss_dssp HHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSC
T ss_pred hhhhh-ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCC
Confidence 45678 99999999999999999999999999998876678999999999999654 4554
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.53 E-value=1.9e-14 Score=84.69 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=50.9
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC--CCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENV-SRWLKDLGDHADSNIVIMMIGNKTDLKHL--PTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~--~~v~ 62 (78)
+++.|+ +++|++++|||+++++||+.+ ..|...+.... ++.|+++||||+|+.+. +.+.
T Consensus 87 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~ 148 (194)
T 3reg_A 87 LRPLSY-ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVT 148 (194)
T ss_dssp TGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCC
T ss_pred HhHhhc-cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCccc
Confidence 567789 999999999999999999998 78999888765 78999999999999753 4444
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.53 E-value=2e-14 Score=82.29 Aligned_cols=55 Identities=44% Similarity=0.981 Sum_probs=49.4
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
++..|+ +++|++++|||++++++|+.+..|+..+.....++.|+++||||+|+.+
T Consensus 68 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 68 ITTAYY-RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp CCHHHH-TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 456788 9999999999999999999999999999887767899999999999943
No 41
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.52 E-value=1.6e-14 Score=84.53 Aligned_cols=54 Identities=20% Similarity=0.594 Sum_probs=48.7
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENV-SRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
+++.|+ +++|++++|||+++++||+++ ..|+..+++.. ++.|+++||||+|+.+
T Consensus 71 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 71 VRPLSY-PDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp TGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred hHHhhc-CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhc
Confidence 457788 999999999999999999999 78999998775 6899999999999974
No 42
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.52 E-value=1.4e-14 Score=85.14 Aligned_cols=57 Identities=11% Similarity=0.289 Sum_probs=49.1
Q ss_pred chhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCC--CCCCchH
Q 038356 6 YYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLK--HLPTSMS 63 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~--~~~~v~~ 63 (78)
|+ +++|++++|||+++++||+++..|+..+..... .++|+++||||+|+. ..+.++.
T Consensus 82 ~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~ 141 (184)
T 3ihw_A 82 FA-AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDD 141 (184)
T ss_dssp HH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCH
T ss_pred ee-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCH
Confidence 67 899999999999999999999999999987653 679999999999994 4455553
No 43
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.52 E-value=1.5e-14 Score=92.83 Aligned_cols=67 Identities=12% Similarity=0.007 Sum_probs=48.8
Q ss_pred cccchhcCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC-------CCchHHHHhccCc
Q 038356 3 NSAYYNRGALGALLVYDVTKS--TTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL-------PTSMSIFQSLSGL 71 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~-------~~v~~~~~~~~~~ 71 (78)
++.|| |+|+++|+|||++++ ++++.+..|+.++.+.. +++|++++|||+||.++ |+++...++..+.
T Consensus 66 ~~~yy-r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~ 141 (331)
T 3r7w_B 66 SERLF-KSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE 141 (331)
T ss_dssp HHHHH-TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhc-cCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHh
Confidence 57899 999999999999998 33334444455555444 78999999999999764 4566655554444
No 44
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=3.6e-14 Score=83.38 Aligned_cols=55 Identities=25% Similarity=0.523 Sum_probs=49.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
++..|+ +++|++++|||+++++||+.+. .|+..+.+.. ++.|+++||||+|+.+.
T Consensus 82 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 82 LRPLSY-PMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp TGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTC
T ss_pred HHHHhc-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 457788 9999999999999999999996 8999998775 58999999999999763
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.51 E-value=9e-15 Score=84.38 Aligned_cols=61 Identities=33% Similarity=0.677 Sum_probs=53.1
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..
T Consensus 79 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 139 (179)
T 2y8e_A 79 LIPSYI-RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 139 (179)
T ss_dssp GSHHHH-HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH
T ss_pred HHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH
Confidence 345678 9999999999999999999999999999877667899999999999977666553
No 46
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=84.63 Aligned_cols=60 Identities=57% Similarity=0.961 Sum_probs=52.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++|+|||++++.+|+.+..|+..+......+.|+++||||+|+.+.+.+.
T Consensus 90 ~~~~~~-~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 149 (193)
T 2oil_A 90 ITSAYY-RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP 149 (193)
T ss_dssp THHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC
T ss_pred hhHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC
Confidence 356788 999999999999999999999999999987766789999999999997766554
No 47
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.50 E-value=1e-14 Score=84.31 Aligned_cols=61 Identities=34% Similarity=0.654 Sum_probs=50.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD---SNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.+... ...|+++||||+|+.+.+.++.
T Consensus 72 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~ 135 (178)
T 2hxs_A 72 MLDKYI-YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP 135 (178)
T ss_dssp THHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH
T ss_pred hhhHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH
Confidence 456788 999999999999999999999999999876532 3345899999999987666653
No 48
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.50 E-value=1.4e-13 Score=81.66 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=49.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~ 58 (78)
+++.|+ +++|++++|||+++++||+++..|+.++.+.. ..+.|+++||||+|+.+.
T Consensus 85 ~~~~~~-~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 141 (198)
T 1f6b_A 85 VWKNYL-PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 141 (198)
T ss_dssp GGGGGG-GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred HHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc
Confidence 467899 99999999999999999999999999886653 367999999999999764
No 49
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=85.64 Aligned_cols=60 Identities=37% Similarity=0.689 Sum_probs=52.8
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
+..|+ +++|++++|||++++.||+.+..|+..+......+.|+++||||+|+.+.+.+..
T Consensus 92 ~~~~~-~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~ 151 (192)
T 2il1_A 92 TSAYY-RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITR 151 (192)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH
T ss_pred HHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH
Confidence 45678 9999999999999999999999999999887767899999999999987666653
No 50
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.50 E-value=3.2e-14 Score=85.11 Aligned_cols=54 Identities=20% Similarity=0.594 Sum_probs=48.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENV-SRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
+++.|+ ++++++++|||+++++||+++ ..|+..+++.. ++.|+++||||+|+.+
T Consensus 92 ~~~~~~-~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 92 VRPLSY-PDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp TGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred HHHhhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhcc
Confidence 467788 999999999999999999999 79999998775 6899999999999964
No 51
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.49 E-value=1.9e-14 Score=83.16 Aligned_cols=61 Identities=21% Similarity=0.457 Sum_probs=51.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDH-ADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||++++++|+.+..|+..+.+. ...+.|+++||||+|+.+.+.+..
T Consensus 73 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~ 134 (181)
T 2fn4_A 73 MREQYM-RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR 134 (181)
T ss_dssp CHHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH
T ss_pred HHHHHH-hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence 346788 9999999999999999999999999988443 346899999999999987666653
No 52
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.49 E-value=2.4e-13 Score=80.15 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=51.1
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSI 64 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~ 64 (78)
+++.|+ +++|++++|||+++++||+++..|+..+.+.. ..+.|+++||||+|+.+.....+.
T Consensus 83 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~ 145 (190)
T 1m2o_B 83 LWKDYF-PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAEL 145 (190)
T ss_dssp SGGGGC-TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHH
T ss_pred HHHHHH-hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHH
Confidence 456789 99999999999999999999999998886543 367999999999999764333333
No 53
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.49 E-value=1.7e-13 Score=78.20 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=51.4
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHh
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQS 67 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~ 67 (78)
++.|+ +++|++++|||+++++||+.+..|+..+.... .++.|+++||||+|+.+.....+....
T Consensus 61 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 125 (164)
T 1r8s_A 61 WRHYF-QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 125 (164)
T ss_dssp HHHHT-TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred HHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHH
Confidence 45678 99999999999999999999999998886542 367999999999999775444444333
No 54
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.49 E-value=1.2e-13 Score=81.11 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=52.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC--------CCCeEEEEeeCCCCCCCCCchHHHHh
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD--------SNIVIMMIGNKTDLKHLPTSMSIFQS 67 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~~lvgnK~Dl~~~~~v~~~~~~ 67 (78)
++..|+ +++|++|+|||+++++||+.+..|+..+.+... ++.|+++||||+|+.+.....+....
T Consensus 79 ~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~ 151 (199)
T 4bas_A 79 LWETYY-DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEI 151 (199)
T ss_dssp GGGGGC-TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred HHHHHH-hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHH
Confidence 456788 999999999999999999999999888865421 37999999999999877555544433
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.48 E-value=3.6e-14 Score=82.66 Aligned_cols=59 Identities=37% Similarity=0.663 Sum_probs=51.7
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+.
T Consensus 87 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 146 (195)
T 3bc1_A 87 TTAFF-RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK 146 (195)
T ss_dssp HHHTT-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC
T ss_pred HHHHH-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC
Confidence 35678 999999999999999999999999999987764 689999999999997766554
No 56
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=8.5e-14 Score=82.59 Aligned_cols=59 Identities=42% Similarity=0.897 Sum_probs=50.9
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++++|||++++.+|+.+..|+..+......+.|+++|+||+|+. .+.+.
T Consensus 85 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~ 143 (213)
T 3cph_A 85 ITTAYY-RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVT 143 (213)
T ss_dssp CCHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSC
T ss_pred HHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccC
Confidence 456788 999999999999999999999999999988776689999999999994 34433
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.48 E-value=2.3e-14 Score=81.90 Aligned_cols=60 Identities=22% Similarity=0.426 Sum_probs=51.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+++.|+ +++|++++|||+++++||+.+..|+..+.+.. .++.|+++||||+|+.+.+.++
T Consensus 67 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 127 (167)
T 1c1y_A 67 MRDLYM-KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG 127 (167)
T ss_dssp HHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC
T ss_pred HHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC
Confidence 345778 99999999999999999999999999887654 3689999999999998766654
No 58
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=1.1e-14 Score=85.97 Aligned_cols=60 Identities=30% Similarity=0.460 Sum_probs=51.9
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchH
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
+..|+ +++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.+.++.
T Consensus 92 ~~~~~-~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~ 152 (196)
T 2atv_A 92 REGHM-RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST 152 (196)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCH
T ss_pred hhhhh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCH
Confidence 45678 99999999999999999999999999987754 36899999999999987666653
No 59
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.48 E-value=1.5e-13 Score=80.47 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=52.5
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHh
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQS 67 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~ 67 (78)
+..|+ +++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.+...+....
T Consensus 77 ~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~ 141 (181)
T 1fzq_A 77 WRSYF-ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEG 141 (181)
T ss_dssp HHHHH-TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred HHHHh-CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHH
Confidence 45688 99999999999999999999999988875542 367999999999999876665554443
No 60
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.48 E-value=3.6e-13 Score=78.52 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=53.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHh
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQS 67 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~ 67 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.+.. .++.|+++||||+|+.+.....+....
T Consensus 78 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 143 (186)
T 1ksh_A 78 YWRNYF-ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEA 143 (186)
T ss_dssp TGGGGC-TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred HHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHH
Confidence 456788 99999999999999999999999988886543 367999999999999876665544443
No 61
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.47 E-value=3.2e-14 Score=81.31 Aligned_cols=59 Identities=32% Similarity=0.549 Sum_probs=51.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++++|||+++++|++.+..|+..+.... ++.|+++|+||+|+.+.+.+.
T Consensus 70 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~ 128 (168)
T 1z2a_A 70 ITKAYY-RGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIK 128 (168)
T ss_dssp CCHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSC
T ss_pred HHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccC
Confidence 456788 99999999999999999999999999997776 779999999999997766554
No 62
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.8e-14 Score=88.93 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=44.5
Q ss_pred CCcEEEEEEECCCh--hhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCCCCCCCCch
Q 038356 10 GALGALLVYDVTKS--TTFENVSRWLKDLGDH-ADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 10 ~a~~~ilv~d~~~~--~s~~~~~~~~~~~~~~-~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+||++|+|||++++ +||+.+..|+.++.+. ..+++|+++||||+|+.+.+.+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~ 217 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR 217 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHH
Confidence 79999999999999 9999999999998765 33679999999999997766654
No 63
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.47 E-value=3.1e-14 Score=85.02 Aligned_cols=59 Identities=37% Similarity=0.651 Sum_probs=51.3
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++|+|||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.+.
T Consensus 101 ~~~~~-~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~ 160 (217)
T 2f7s_A 101 TTAFF-RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN 160 (217)
T ss_dssp HHHHH-TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred HHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC
Confidence 45678 999999999999999999999999988876654 679999999999998766655
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.47 E-value=6.2e-14 Score=82.76 Aligned_cols=54 Identities=26% Similarity=0.599 Sum_probs=48.5
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
+++.|+ +++|++++|||+++++||+.+. .|+..+.... ++.|+++||||+|+.+
T Consensus 84 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 84 LRPLCY-TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRE 138 (201)
T ss_dssp SGGGGG-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGG
T ss_pred HhHhhc-CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhh
Confidence 456788 9999999999999999999996 7999998776 5899999999999965
No 65
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.47 E-value=2.1e-14 Score=81.88 Aligned_cols=59 Identities=22% Similarity=0.471 Sum_probs=51.6
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++.|+ +++|++++|||++++++|+.+..|+..+.+... .+.|+++|+||+|+.+.+.+.
T Consensus 69 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 128 (168)
T 1u8z_A 69 RDNYF-RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128 (168)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC
T ss_pred HHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC
Confidence 45678 999999999999999999999999999987664 579999999999997766654
No 66
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.47 E-value=3e-13 Score=79.86 Aligned_cols=66 Identities=15% Similarity=0.287 Sum_probs=52.9
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHhc
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQSL 68 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~~ 68 (78)
+++.|+ +++|++++|||+++++||+.+..|+..+.... .++.|+++||||+|+.+.....+.....
T Consensus 89 ~~~~~~-~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 155 (192)
T 2b6h_A 89 LWRHYF-QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL 155 (192)
T ss_dssp THHHHH-HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred HHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence 345688 99999999999999999999999998886543 3679999999999997765544444433
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=1.7e-14 Score=85.36 Aligned_cols=53 Identities=40% Similarity=0.779 Sum_probs=45.8
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLK 56 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~ 56 (78)
+..|+ +++|++|+|||++++.+|+.+..|+..+......+.|+++||||+|+.
T Consensus 94 ~~~~~-~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 94 AKSYF-RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHH-hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 45678 999999999999999999999999999987766789999999999995
No 68
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.46 E-value=5.2e-13 Score=77.81 Aligned_cols=64 Identities=22% Similarity=0.207 Sum_probs=52.3
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQ 66 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~ 66 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.....+...
T Consensus 81 ~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~ 145 (181)
T 2h17_A 81 SWNTYY-TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQ 145 (181)
T ss_dssp GGGGGG-TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHH
T ss_pred HHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHH
Confidence 456789 99999999999999999999999988886543 36799999999999976544444433
No 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.46 E-value=1.6e-13 Score=80.23 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=47.1
Q ss_pred cccchhcCCcEEEEEEECC------ChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 3 NSAYYNRGALGALLVYDVT------KSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
++.|+ +++|++++|||++ ++++|+.+..|+.+++.. .++.|+++||||+|+.+..
T Consensus 91 ~~~~~-~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~NK~Dl~~~~ 151 (198)
T 3t1o_A 91 RKLIL-RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVNKRDLPDAL 151 (198)
T ss_dssp HHHHT-TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEECTTSTTCC
T ss_pred HHHHH-hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEEchhccccc
Confidence 45788 9999999999999 778999999999888543 3789999999999997653
No 70
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.46 E-value=2.6e-13 Score=81.38 Aligned_cols=56 Identities=38% Similarity=0.661 Sum_probs=50.3
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
++..|+ ++++++++|||++++.||+.+..|+..+.+.. ++.|+++||||+|+.+.+
T Consensus 80 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 80 LRDGYY-IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp CCHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS
T ss_pred HHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc
Confidence 456788 99999999999999999999999999998876 689999999999997543
No 71
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.46 E-value=5.6e-14 Score=82.91 Aligned_cols=59 Identities=22% Similarity=0.471 Sum_probs=51.6
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++++|||+++++||+.+..|+..+.+... .+.|+++||||+|+.+.+.++
T Consensus 79 ~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 138 (206)
T 2bov_A 79 RDNYF-RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 138 (206)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC
T ss_pred HHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc
Confidence 45678 999999999999999999999999999987763 579999999999998766654
No 72
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.45 E-value=4.6e-13 Score=76.76 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=52.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQ 66 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~ 66 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.... ..+.|+++||||+|+.+.+...+...
T Consensus 67 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 131 (171)
T 1upt_A 67 YWRCYY-SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMAN 131 (171)
T ss_dssp GGGGGC-TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHH
T ss_pred HHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHH
Confidence 456788 99999999999999999999988888876543 26799999999999987655444433
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.45 E-value=1.2e-13 Score=79.72 Aligned_cols=55 Identities=38% Similarity=0.739 Sum_probs=46.7
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD----SNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~~lvgnK~Dl~~ 57 (78)
++..|+ +++|++++|||++++++|+.+..|+..+..... .+.|+++||||+|+.+
T Consensus 74 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 74 LGVAFY-RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ---CCS-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hhHHHh-hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 356788 999999999999999999999999999876653 6789999999999953
No 74
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.45 E-value=2.9e-14 Score=84.86 Aligned_cols=57 Identities=30% Similarity=0.578 Sum_probs=49.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
+++.|+ +++|++++|||+++++||+.+. .|+..+.... ++.|+++||||+|+.+.+.
T Consensus 73 ~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 73 LRPLSY-RGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp --CGGG-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHH
T ss_pred HHHhhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCcc
Confidence 467789 9999999999999999999996 8999998776 5899999999999976543
No 75
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.45 E-value=7.4e-13 Score=77.45 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=52.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHh
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQS 67 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~ 67 (78)
+++.|+ +++|++++|||+++++||+.+..|+..+.... .++.|+++||||+|+.+.....+....
T Consensus 82 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 147 (189)
T 2x77_A 82 YWRCYF-SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQ 147 (189)
T ss_dssp CCSSSS-TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred HHHHHh-hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHH
Confidence 456788 99999999999999999999999888876543 367999999999999876554444433
No 76
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.45 E-value=4.4e-14 Score=80.46 Aligned_cols=60 Identities=20% Similarity=0.421 Sum_probs=51.3
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCchH
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
+..|+ ++++++++|||++++++|+.+..|...+.+... .+.|+++|+||+|+.+.+++..
T Consensus 68 ~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 128 (167)
T 1kao_A 68 RDLYI-KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSS 128 (167)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCH
T ss_pred HHHHh-ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCH
Confidence 45678 999999999999999999999999998876653 6799999999999976666553
No 77
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.45 E-value=4.4e-14 Score=82.77 Aligned_cols=59 Identities=19% Similarity=0.373 Sum_probs=50.8
Q ss_pred ccccchhcCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKS-TTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+++.|+ ++++++++|||++++ ++|+.+..|+.++.... ++.|+++||||+|+.+.+.++
T Consensus 72 ~~~~~~-~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 72 THPHFM-TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp TSHHHH-HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHH
T ss_pred hhHHHc-cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhH
Confidence 456788 999999999999997 68999999999987765 579999999999998766654
No 78
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=1.9e-13 Score=79.95 Aligned_cols=55 Identities=44% Similarity=0.851 Sum_probs=48.5
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~ 57 (78)
++..|+ +++|++++|||++++.+++.+..|+.++..... .+.|+++|+||+|+.+
T Consensus 80 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 80 LTPSYY-RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp SHHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred hhHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 456788 999999999999999999999999999987653 6799999999999953
No 79
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=8.3e-13 Score=76.59 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=53.4
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHh
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQS 67 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~ 67 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.+.. ..+.|+++|+||+|+.+.....+....
T Consensus 78 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~ 143 (183)
T 1moz_A 78 YWRCYY-ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKE 143 (183)
T ss_dssp TGGGTT-TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred HHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHH
Confidence 456788 99999999999999999999999998887654 367999999999999775544444443
No 80
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.45 E-value=4.2e-14 Score=82.05 Aligned_cols=59 Identities=22% Similarity=0.471 Sum_probs=51.4
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++++|||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+.+.
T Consensus 83 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 142 (187)
T 2a9k_A 83 RDNYF-RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 142 (187)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC
T ss_pred HHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC
Confidence 45678 999999999999999999999999999977664 579999999999997766554
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.44 E-value=3.8e-14 Score=82.12 Aligned_cols=57 Identities=30% Similarity=0.594 Sum_probs=50.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
++..|+ +++|++++|||+++++||+.+. .|+..+.... ++.|+++||||+|+.+.+.
T Consensus 72 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 72 LRPLSY-RGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp TGGGGG-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHH
T ss_pred hHHhhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcc
Confidence 467788 9999999999999999999996 7999998775 5899999999999976554
No 82
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=4.6e-13 Score=78.33 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=51.0
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
++..|+ +++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.....+
T Consensus 76 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~ 137 (187)
T 1zj6_A 76 SWNTYY-TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 137 (187)
T ss_dssp GGHHHH-TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred HHHHHh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHH
Confidence 356788 99999999999999999999999998887653 26799999999999976544333
No 83
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.44 E-value=7.8e-14 Score=88.06 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=49.3
Q ss_pred CccccchhcCCcEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc
Q 038356 1 VINSAYYNRGALGALLVYDVTKST-TFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS 61 (78)
Q Consensus 1 sl~~~y~~~~a~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v 61 (78)
++++.|| +++|++|+|||+++++ +|+.+..|+..+.. .++|+++||||+||.+.+.+
T Consensus 76 ~l~~~~~-~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v 133 (301)
T 1u0l_A 76 LLTKPHV-ANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL 133 (301)
T ss_dssp EETTTTE-ESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH
T ss_pred eeecccc-ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH
Confidence 3678899 9999999999999998 79999999988764 46899999999999876553
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.44 E-value=6.5e-13 Score=77.92 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=52.0
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHh
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQS 67 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~ 67 (78)
++..|+ +++|++++|||++++++|+.+..|+..+.+.. ..+.|+++||||+|+.+.....+....
T Consensus 83 ~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~ 148 (188)
T 1zd9_A 83 MWERYC-RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK 148 (188)
T ss_dssp THHHHH-TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred HHHHHH-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHH
Confidence 456788 99999999999999999999999988886543 367999999999999765444443333
No 85
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.43 E-value=2.6e-13 Score=80.41 Aligned_cols=55 Identities=22% Similarity=0.543 Sum_probs=49.0
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENV-SRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
++..|+ +++|++++|||++++++|+.+ ..|...+.... ++.|+++||||+|+.+.
T Consensus 89 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 89 LRPLSY-PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD 144 (201)
T ss_dssp TGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTC
T ss_pred HHHHhc-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcC
Confidence 456788 999999999999999999999 78999888765 68999999999999765
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=76.85 Aligned_cols=62 Identities=26% Similarity=0.400 Sum_probs=51.5
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEeeCCCCCCCCCchHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD---SNIVIMMIGNKTDLKHLPTSMSI 64 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~lvgnK~Dl~~~~~v~~~ 64 (78)
++..|+ +++|++++|||+++++||+.+..|+..+..... .+.|+++||||+|+.+.....+.
T Consensus 83 ~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 147 (190)
T 2h57_A 83 LWEHYY-KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKV 147 (190)
T ss_dssp GGGGGG-GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHH
T ss_pred HHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHH
Confidence 456788 999999999999999999999999988866543 57999999999999765444433
No 87
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.42 E-value=3.9e-13 Score=77.52 Aligned_cols=58 Identities=31% Similarity=0.576 Sum_probs=49.6
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD----SNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+..|+ +++|++++|||++++++++.+..|+..+..... .+.|+++||||+|+. .+.+.
T Consensus 73 ~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~ 134 (177)
T 1wms_A 73 RTPFY-RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVS 134 (177)
T ss_dssp HGGGG-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSC
T ss_pred HHHHH-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccC
Confidence 45788 999999999999999999999999999876653 678999999999997 34443
No 88
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.42 E-value=1.4e-13 Score=81.31 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=44.8
Q ss_pred ccchhcCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKS--TTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
+.|| +++|++|+|||++++ ++++.+..|+.++.... +++|+++||||+|+.+
T Consensus 90 ~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 90 EMIF-RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLS 143 (196)
T ss_dssp HHHH-HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSC
T ss_pred cccc-ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCc
Confidence 6788 999999999999998 78888888888775544 7899999999999865
No 89
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=82.64 Aligned_cols=56 Identities=30% Similarity=0.628 Sum_probs=44.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
+++.|+ +++|++++|||+++++||+.+. .|+..+.... ++.|+++||||+|+.+.+
T Consensus 98 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 98 LRPLFY-PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCH
T ss_pred HHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccc
Confidence 456788 9999999999999999999995 7999998765 679999999999997653
No 90
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.41 E-value=3.2e-13 Score=78.48 Aligned_cols=55 Identities=22% Similarity=0.540 Sum_probs=48.7
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~ 57 (78)
+++.|+ +++|++++|||++++++|+.+..|...+.... ..+.|+++||||+|+.+
T Consensus 68 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 68 MRDQYM-RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp THHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred HHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 456788 99999999999999999999999999997755 36899999999999974
No 91
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.41 E-value=1.9e-13 Score=79.34 Aligned_cols=55 Identities=25% Similarity=0.563 Sum_probs=48.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
++..|+ +++|++++|||++++.||+.+. .|+..+.... ++.|+++||||+|+.+.
T Consensus 69 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 69 LRPLSY-PQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124 (186)
T ss_dssp TGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTC
T ss_pred HHHHhc-cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEccccccc
Confidence 456788 9999999999999999999996 7999998775 58999999999999654
No 92
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.40 E-value=6.6e-13 Score=78.41 Aligned_cols=55 Identities=36% Similarity=0.678 Sum_probs=48.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC----CCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD----SNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~~lvgnK~Dl~~ 57 (78)
++..|+ +++|++|+|||++++++|+.+..|+..+..... .+.|+++||||+|+.+
T Consensus 73 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 73 LGVAFY-RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp SCCGGG-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred hHHHHH-hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 456788 999999999999999999999999998876542 4789999999999973
No 93
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=5.8e-14 Score=80.40 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=50.1
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCCCchH
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD--SNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
+..|+ +++|++++|||++++++++.+..|+..+.+... ++.|+++||||+|+.+.+.+..
T Consensus 68 ~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~ 129 (172)
T 2erx_A 68 QRLSI-SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS 129 (172)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH
T ss_pred HHHhc-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH
Confidence 45678 899999999999999999999999888876542 5799999999999977666653
No 94
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.40 E-value=7.2e-13 Score=77.46 Aligned_cols=55 Identities=24% Similarity=0.539 Sum_probs=45.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~ 57 (78)
++..|+ ++++++++|||++++.+|+.+..|...+..... .+.|+++|+||+|+.+
T Consensus 85 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 85 MRDQYM-RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----C-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHhh-CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 356788 999999999999999999999999999877653 5799999999999975
No 95
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=5.1e-13 Score=79.48 Aligned_cols=55 Identities=22% Similarity=0.518 Sum_probs=48.9
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENV-SRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
++..|+ +++|++++|||++++++|+.+ ..|...+.... ++.|+++||||+|+.+.
T Consensus 89 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 89 LRPLSY-PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144 (207)
T ss_dssp TGGGGC-TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred HHHhhc-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence 456788 999999999999999999999 78999888765 68999999999999654
No 96
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.38 E-value=5.6e-13 Score=79.31 Aligned_cols=57 Identities=25% Similarity=0.520 Sum_probs=50.1
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
++..|+ +++|++++|||+++++||+.+. .|+..+.... ++.|+++||||+|+.+.+.
T Consensus 94 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 94 LRPLSY-PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp TGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHH
T ss_pred HHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchh
Confidence 456788 9999999999999999999996 8999998776 7899999999999976543
No 97
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.38 E-value=1.3e-12 Score=76.30 Aligned_cols=57 Identities=32% Similarity=0.606 Sum_probs=47.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ +++|++++|||++++.+++.+..|+..+....+ .|+++|+||+| ...+.+.
T Consensus 109 ~~~~~~-~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~ 165 (208)
T 3clv_A 109 IVPLYY-RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVD 165 (208)
T ss_dssp THHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSC
T ss_pred HHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCC
Confidence 346778 999999999999999999999999999987653 99999999999 4444444
No 98
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.36 E-value=8.3e-13 Score=74.92 Aligned_cols=54 Identities=24% Similarity=0.578 Sum_probs=47.8
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCC
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKH 57 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~ 57 (78)
+..|+ +++|++++|||++++++++.+..|...+..... .+.|+++|+||+|+.+
T Consensus 68 ~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 68 RDQYM-RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHhh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 34678 999999999999999999999999999877653 4799999999999976
No 99
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.35 E-value=6.4e-13 Score=87.11 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=50.3
Q ss_pred CccccchhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCC
Q 038356 1 VINSAYYNRGALGALLVYDVTK----------STTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 1 sl~~~y~~~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~ 58 (78)
++++.|| ++++++|+|||+++ +++|+++..|++.+..+. .+++|++|+|||+||.++
T Consensus 232 ~~w~~yf-~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ 299 (402)
T 1azs_C 232 RKWIQCF-NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 299 (402)
T ss_dssp GGGGGGT-TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHH
T ss_pred hhhHhhc-cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhh
Confidence 3678999 99999999999999 999999999999987653 478999999999998543
No 100
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.34 E-value=3e-12 Score=81.62 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=53.5
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHhcc
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQSLS 69 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~~~ 69 (78)
++..|+ +++|++|+|||++++++|+.+..|+..+.... .+++|+++||||+|+.+.....+....++
T Consensus 225 ~~~~~~-~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~ 292 (329)
T 3o47_A 225 LWRHYF-QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 292 (329)
T ss_dssp SHHHHH-TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred HHHHHh-ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhc
Confidence 456788 99999999999999999999988777765433 36899999999999987766555554443
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.34 E-value=7.3e-13 Score=83.70 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=45.6
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA--DSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~lvgnK~Dl~~ 57 (78)
+++.|+ +++|++++|||+++++||+++..|...+.+.. .+++|+++||||+|+.+
T Consensus 73 ~~~~~~-~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 73 QKDHIF-QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp THHHHH-TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHHHh-ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 456788 99999999999999999999987755553321 36899999999999976
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.34 E-value=7.3e-12 Score=83.04 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=54.8
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCCCchHHHHhcc
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLPTSMSIFQSLS 69 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~~v~~~~~~~~ 69 (78)
++..|| +++|++|+|||++++++|+.+..|+.++.+.. ..+.|+++||||+|+.+.....+....++
T Consensus 382 ~~~~~~-~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 449 (497)
T 3lvq_E 382 LWRHYY-TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 449 (497)
T ss_dssp GGGGGG-TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTT
T ss_pred HHHHHh-ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhc
Confidence 456789 99999999999999999999998888886543 26799999999999987665555555443
No 103
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.32 E-value=8e-13 Score=85.39 Aligned_cols=56 Identities=9% Similarity=0.098 Sum_probs=49.2
Q ss_pred CccccchhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCC
Q 038356 1 VINSAYYNRGALGALLVYDVT----------KSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 1 sl~~~y~~~~a~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~ 57 (78)
++++.|| ++++++|+|||++ +.++|+++..|++.+.++. .+++|++|+|||+||.+
T Consensus 198 ~~~~~y~-~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 198 RKWIHLF-EGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 264 (354)
T ss_dssp GGTGGGC-TTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred HHHHHHh-CCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhh
Confidence 3678999 9999999999999 8899999999999887653 36899999999999854
No 104
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=8.7e-13 Score=77.39 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=46.5
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCC
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD--SNIVIMMIGNKTDLKH 57 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~lvgnK~Dl~~ 57 (78)
+..|+ +++|++++|||++++++|+.+..|+..+.+... ++.|+++||||+|+.+
T Consensus 73 ~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 73 QRLSI-SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHH-HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHhh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 45678 999999999999999999999989887766542 4789999999999975
No 105
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.30 E-value=1.6e-12 Score=81.49 Aligned_cols=55 Identities=22% Similarity=0.507 Sum_probs=48.4
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
++..|+ +++|++++|||++++.||+.+. .|+..+.... ++.|+++||||+|+.+.
T Consensus 219 ~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 219 LRPLSY-PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 274 (332)
T ss_dssp TGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTC
T ss_pred HHHHhc-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccc
Confidence 456788 9999999999999999999996 7999988775 58999999999999653
No 106
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.97 E-value=2e-13 Score=80.88 Aligned_cols=56 Identities=25% Similarity=0.529 Sum_probs=48.4
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
+++.|+ +++|++++|||++++++|+.+. .|+..+.... ++.|+++||||+|+.+.+
T Consensus 94 ~~~~~~-~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 94 LRPLSY-PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
Confidence 456788 9999999999999999999996 8988887665 489999999999997543
No 107
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.29 E-value=5.8e-12 Score=74.47 Aligned_cols=60 Identities=70% Similarity=1.149 Sum_probs=51.3
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
++..|+ ++++++++|||+++..+|+++..|+..+......+.|++++|||+|+.+.+.++
T Consensus 70 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~ 129 (199)
T 2f9l_A 70 ITSAYY-RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 129 (199)
T ss_dssp CCHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC
T ss_pred hhHHHH-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcC
Confidence 345678 999999999999999999999999988876655678999999999998766554
No 108
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=8.8e-12 Score=72.94 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=51.1
Q ss_pred ccchhcC----CcEEEEEEECC-ChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeCCCCCCCCCchHHHHhc
Q 038356 4 SAYYNRG----ALGALLVYDVT-KSTTFENVSRWLKDLGDH----ADSNIVIMMIGNKTDLKHLPTSMSIFQSL 68 (78)
Q Consensus 4 ~~y~~~~----a~~~ilv~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~~lvgnK~Dl~~~~~v~~~~~~~ 68 (78)
..|+ ++ +|++++|||++ ++++|+.+..|+..+... ..++.|+++||||+|+.+.+.+.+....+
T Consensus 109 ~~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 109 SDYL-KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp HHHH-HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred HHHH-HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 3455 55 89999999999 999999998888877543 23679999999999998888776555443
No 109
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.26 E-value=6.9e-12 Score=73.98 Aligned_cols=60 Identities=70% Similarity=1.149 Sum_probs=51.1
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+.+.|+ ++++++++|||+++..+|+++..|+..+.+....+.|+++++||+|+.+.+.+.
T Consensus 94 ~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~ 153 (191)
T 1oix_A 94 ITSAYY-RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 153 (191)
T ss_dssp CCHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC
T ss_pred hhHHHh-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC
Confidence 456788 999999999999999999999999988876655678999999999997665554
No 110
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.23 E-value=3.2e-12 Score=82.27 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=48.1
Q ss_pred ccccchhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVT----------KSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~ 57 (78)
++..|| ++++|+|+|||++ +.++|++...|+..+..+. .+++|++|+|||+||.+
T Consensus 177 ~w~~yy-~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 177 XWVSFF-SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHTTS-CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred cHHHHh-ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 567899 9999999999999 8899999988988886654 37899999999999864
No 111
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.23 E-value=4.9e-12 Score=81.68 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=47.5
Q ss_pred ccccchhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTK----------STTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLK 56 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~ 56 (78)
++..|| ++++++|+|||+++ .++|++...|++.+..+. ..++|++|+|||+||.
T Consensus 209 ~w~~yf-~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 209 KWIHCF-EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGGGGC-TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHH-hcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCch
Confidence 678999 99999999999999 578999999999887653 3679999999999995
No 112
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.20 E-value=6.7e-11 Score=70.30 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=44.5
Q ss_pred ccccchhcCCcEEEEEEECCChh-hHHHHHH-HHHHHhhh--cCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKST-TFENVSR-WLKDLGDH--ADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+++.|+ ++++++++|||+++.+ ++..+.. |...+... ...+.|+++||||+|+.+.+...
T Consensus 71 ~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 134 (214)
T 2fh5_B 71 LLDRFK-SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAK 134 (214)
T ss_dssp HHHHHG-GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHH
T ss_pred HHHHHH-hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHH
Confidence 345688 9999999999999964 5776644 55444432 23579999999999998766543
No 113
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.20 E-value=2.1e-11 Score=72.65 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=48.6
Q ss_pred ccchhcC----CcEEEEEEECC-ChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeCCCCCCCCCch
Q 038356 4 SAYYNRG----ALGALLVYDVT-KSTTFENVSRWLKDLGDH----ADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 4 ~~y~~~~----a~~~ilv~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
..|+ ++ ++++++|+|.+ ++++|+.+..|+.++... ..+++|+++|+||+|+.+.+.+.
T Consensus 73 ~~~~-~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 73 SDYL-KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp HHHH-HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred HHHH-HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 4566 66 89999999999 999999999998888654 34689999999999998877654
No 114
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.18 E-value=1.8e-11 Score=79.25 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=47.7
Q ss_pred ccccchhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTK----------STTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~ 57 (78)
++..|| ++++++|+|||+++ .++|+++..|+..+..+. ..++|++|+|||+||.+
T Consensus 217 ~w~~~f-~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 217 RWFECF-DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 282 (362)
T ss_dssp -CTTSC-TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred hHHHHh-CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhh
Confidence 578899 99999999999999 789999999998886653 36799999999999853
No 115
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.16 E-value=2.7e-11 Score=77.66 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=48.0
Q ss_pred CccccchhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeCCCCCCCC
Q 038356 1 VINSAYYNRGALGALLVYDVT----------KSTTFENVSRWLKDLGDHA-DSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 1 sl~~~y~~~~a~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK~Dl~~~~ 59 (78)
+++..|| ++++|+|+|||++ +.++|++...|++.+..+. ..++|++|+|||+||.+++
T Consensus 182 ~~w~~yf-~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k 250 (327)
T 3ohm_A 182 RKWIHCF-ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK 250 (327)
T ss_dssp TTGGGGC-SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHH
T ss_pred HHHHHHh-CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhh
Confidence 4688999 9999999999654 7888999988888886543 3689999999999996543
No 116
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.13 E-value=3.4e-11 Score=76.08 Aligned_cols=54 Identities=11% Similarity=-0.012 Sum_probs=46.8
Q ss_pred ccccchhcCCcEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKST-TFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
+.+.|+ +++|++++|+|+++++ |++.+..|+..+.. .++|+++|+||+||.+.+
T Consensus 72 l~r~~~-~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 72 LIRPKV-ANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp EETTEE-ESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH
T ss_pred HhHHHH-HhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc
Confidence 456789 9999999999999997 99999999987764 568999999999997654
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.06 E-value=3.4e-11 Score=69.97 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=43.2
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
.++ +++|++++|||.+++.|++ ...|+..+.+....++|+++||||+|+.+
T Consensus 79 ~~~-~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 79 QEI-EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHH-HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHH-HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 468 9999999999999999987 45788888776656799999999999854
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.01 E-value=6.1e-10 Score=67.06 Aligned_cols=57 Identities=16% Similarity=0.036 Sum_probs=42.5
Q ss_pred cchhcCCcEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 5 AYYNRGALGALLVYDVTKSTTFEN--VSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
.++ +.+|++++|||++++.||+. ...|+..+.... ++.|+++||||+|+.+.+.+..
T Consensus 104 ~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~ 162 (228)
T 2qu8_A 104 ALA-HINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSI 162 (228)
T ss_dssp HHH-TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCH
T ss_pred Hhh-ccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHH
Confidence 356 89999999999999988763 246776665543 5799999999999987766653
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.97 E-value=6.9e-10 Score=74.43 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=47.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchHH
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMSI 64 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~~ 64 (78)
+.+.|+ ++++++++|||+++. +.+..|..++.... ++.|+++||||+|+.+.+.+...
T Consensus 114 ~~~~~l-~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~ 171 (535)
T 3dpu_A 114 SHQFFM-TRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQK 171 (535)
T ss_dssp TCHHHH-HSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHH
T ss_pred HHHHHc-cCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHH
Confidence 445677 999999999998765 55678999998876 57999999999999877776543
No 120
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.89 E-value=1.4e-09 Score=66.42 Aligned_cols=67 Identities=7% Similarity=-0.019 Sum_probs=49.0
Q ss_pred CccccchhcCCcEEEEEEECCChhhHHHHHHHHHHH----hhhc-CCCCeEEEEeeCC-CCCCCCCchHHHHhcc
Q 038356 1 VINSAYYNRGALGALLVYDVTKSTTFENVSRWLKDL----GDHA-DSNIVIMMIGNKT-DLKHLPTSMSIFQSLS 69 (78)
Q Consensus 1 sl~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~----~~~~-~~~~~~~lvgnK~-Dl~~~~~v~~~~~~~~ 69 (78)
++|+.|| .++||+|+|.|.+|++.++ .+.-++++ .+.. -.++|++|.+||. |+++.....+....++
T Consensus 117 plWr~Yy-~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~ 189 (227)
T 3l82_B 117 PQIQKVC-EVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 189 (227)
T ss_dssp CCHHHHH-HHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred HHHHHHh-cCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC
Confidence 4678999 9999999999999997655 33333222 2221 2578999999995 8888777777777664
No 121
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.82 E-value=2.2e-09 Score=61.60 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=38.7
Q ss_pred ccchhc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 4 SAYYNR--GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 4 ~~y~~~--~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
+.|+ + +++++++|+|.++.++ ...|+.++.+ .+.|+++||||+|+.+.+.
T Consensus 74 ~~~~-~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~ 125 (165)
T 2wji_A 74 RDYI-INEKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLG 125 (165)
T ss_dssp HHHH-HHHCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTT
T ss_pred HHHH-hcCCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccC
Confidence 5667 6 8999999999998654 4557777754 3689999999999865443
No 122
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.81 E-value=1.3e-08 Score=58.45 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=36.5
Q ss_pred ccccchhcCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTK---STTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
++..++ +++|++++|||+++ +++++.+. .+ ...+.|+++||||+|+.+.
T Consensus 71 ~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~l~----~~---~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 71 MRARGA-QVTDIVILVVAADDGVMPQTVEAIN----HA---KAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp SCCSSC-CCCCEEEEEEETTCCCCHHHHHHHH----HH---GGGSCCEEEEEETTTSSCS
T ss_pred HHHHHH-hhCCEEEEEEECCCCCcHHHHHHHH----HH---HhCCCCEEEEEECccCCcC
Confidence 456778 99999999999998 45554432 22 2256899999999999763
No 123
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.79 E-value=3.8e-10 Score=65.47 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=42.8
Q ss_pred ccchhcC-CcEEEEEEECCChhhHHHH-HHHHHH--------Hhh-hcCCCCeEEEEeeCCCCCCCC
Q 038356 4 SAYYNRG-ALGALLVYDVTKSTTFENV-SRWLKD--------LGD-HADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 4 ~~y~~~~-a~~~ilv~d~~~~~s~~~~-~~~~~~--------~~~-~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
..|+ ++ +++++++|++++.++|+++ ..|... +.. ....+.|+++||||+|+.+.+
T Consensus 73 ~~~~-~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 73 VHFI-EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHH-HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HHHH-HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 4567 77 9999999999999999998 778753 222 223579999999999997654
No 124
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.78 E-value=5.4e-09 Score=67.21 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=46.0
Q ss_pred ccchhcC---CcEEEEEEECCC---hhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCC
Q 038356 4 SAYYNRG---ALGALLVYDVTK---STTFENVSRWLKDLGDHAD--SNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 4 ~~y~~~~---a~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~--~~~~~~lvgnK~Dl~~~~ 59 (78)
..|+ +. ++++++|+|+++ +++++.+..|..++....+ .+.|+++|+||+|+.+.+
T Consensus 228 ~~fl-~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 228 HQFL-RHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp HHHH-HHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred HHHH-HHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 4455 54 999999999999 8999999999999987653 478999999999997543
No 125
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.76 E-value=6.3e-09 Score=60.66 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=40.4
Q ss_pred cccchhcCC---cEEEEEEECCChhhHHHHH--HHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGA---LGALLVYDVTKSTTFENVS--RWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a---~~~ilv~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
.+.|+ +++ +++++|+|.+++.++.... .|+. . .+.|+++|+||+|+.+.+.+.
T Consensus 96 ~~~~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~---~~~p~i~v~nK~Dl~~~~~~~ 153 (195)
T 1svi_A 96 IETYI-TTREELKAVVQIVDLRHAPSNDDVQMYEFLK---Y---YGIPVIVIATKADKIPKGKWD 153 (195)
T ss_dssp HHHHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCGGGHH
T ss_pred HHHHH-hhhhcCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEECcccCChHHHH
Confidence 34566 777 9999999999988887643 3332 2 568999999999998776654
No 126
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.75 E-value=6e-09 Score=58.85 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=35.1
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
..++ +++|++++|+|.++..+... .|+...... .+.|+++||||+|+.+.
T Consensus 74 ~~~~-~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 74 DRAL-EDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHT-TTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG
T ss_pred HHHH-HhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc
Confidence 3567 89999999999998644322 222222222 46899999999999754
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.68 E-value=3.9e-08 Score=63.11 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=45.4
Q ss_pred chhcCCcEEEEEEECCChh--hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc
Q 038356 6 YYNRGALGALLVYDVTKST--TFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS 61 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v 61 (78)
+. ..+|++++|+|+++.. +++....|+..+.... ++.|+++|+||+|+.+...+
T Consensus 243 ~~-~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~ 298 (357)
T 2e87_A 243 LR-YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENI 298 (357)
T ss_dssp GG-GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHH
T ss_pred HH-hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHH
Confidence 44 5799999999999988 7888889999988765 37999999999999765554
No 128
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.65 E-value=1.9e-08 Score=63.55 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=43.0
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLK 56 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~ 56 (78)
..++ +++|++++|+|.++..++.....|...+.. .+.|+++|+||+|+.
T Consensus 87 ~~~l-~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 87 KQSL-EEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHH-HHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGS
T ss_pred HHHh-hcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCC
Confidence 4577 899999999999999999998888888765 358999999999997
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.60 E-value=6.1e-08 Score=64.68 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=41.7
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
..++ +++|++++|+|.+++.+++.+..+...+... .+.|+++|+||+|+.+.+.+.
T Consensus 307 ~~~~-~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~ 362 (476)
T 3gee_A 307 RMKM-AEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADAL 362 (476)
T ss_dssp -CCC-SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHHH
T ss_pred Hhhc-ccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccchh
Confidence 4578 9999999999999999887544443333332 268999999999998766543
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.58 E-value=9.3e-08 Score=60.37 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=39.9
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHH-HHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWL-KDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
..|+ +++|++++|+|.++..+.. ..|+ +.+.+.. ++.|+++|+||+|+.+.+.
T Consensus 81 ~~~l-~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 81 YEAL-ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp HHHT-SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH
T ss_pred HHHH-hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH
Confidence 3578 9999999999999875543 3454 4555543 5799999999999976544
No 131
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.58 E-value=3.2e-08 Score=62.92 Aligned_cols=66 Identities=8% Similarity=-0.058 Sum_probs=48.1
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHH----HHHhhhc-CCCCeEEEEeeC-CCCCCCCCchHHHHhcc
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWL----KDLGDHA-DSNIVIMMIGNK-TDLKHLPTSMSIFQSLS 69 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~----~~~~~~~-~~~~~~~lvgnK-~Dl~~~~~v~~~~~~~~ 69 (78)
+++.|| .++||+|+|.|.+|++.++ .+.-+ ..+.+.. -.++|++|.+|| .|+.+.....+..+.++
T Consensus 203 lWr~Yy-~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 203 QIQKVC-EVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp HHHHHH-HHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred HHHHHh-cCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 567899 9999999999999998665 32222 2222221 267999999997 69988777777777665
No 132
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.57 E-value=1.5e-08 Score=58.72 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=38.2
Q ss_pred ccchhc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 4 SAYYNR--GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 4 ~~y~~~--~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
..|+ + +++++++|+|.++ ++....|...+.. .+.|+++||||+|+.+.+.
T Consensus 78 ~~~~-~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 78 RDYI-INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp HHHH-HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTT
T ss_pred HHHH-hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccccc
Confidence 4566 5 4999999999875 5666778877765 4689999999999965443
No 133
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.53 E-value=7.9e-08 Score=55.70 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=35.7
Q ss_pred ccchhcCC---cEEEEEEECCChhh--HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 4 SAYYNRGA---LGALLVYDVTKSTT--FENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 4 ~~y~~~~a---~~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
+.|+ +++ +++++|+|.++..+ ...+..|+.. .+.|+++||||+|+.+...
T Consensus 96 ~~~~-~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~ 150 (195)
T 3pqc_A 96 EDYF-KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSE 150 (195)
T ss_dssp HHHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGG
T ss_pred HHHH-hcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHH
Confidence 4566 666 99999999987643 4444555543 2589999999999975443
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.45 E-value=2.9e-07 Score=60.44 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=42.8
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS 61 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v 61 (78)
.++ +++|++++|+|.++..+++.. .|...+.+ .+.|+++|+||+|+.+.+.+
T Consensus 253 ~~~-~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~ 304 (436)
T 2hjg_A 253 KAI-DRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDES 304 (436)
T ss_dssp HHH-HHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTT
T ss_pred HHH-HhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchH
Confidence 367 899999999999999888775 57776654 46899999999999776554
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.41 E-value=5e-07 Score=59.58 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=38.4
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS 61 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v 61 (78)
.++ +++|++++|+|.+..+. ...|+..+.+. +.|+++|+||+|+.+.+..
T Consensus 109 ~~l-~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 109 RVF-YRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp HHH-TSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT
T ss_pred HHH-hcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH
Confidence 477 89999999999944433 35677766654 6899999999999876654
No 136
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.38 E-value=1.3e-07 Score=59.00 Aligned_cols=50 Identities=20% Similarity=0.075 Sum_probs=37.9
Q ss_pred cccchhc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 3 NSAYYNR--GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 3 ~~~y~~~--~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
++.|+ + ++|++++|+|.++.++. ..|..++.+ .+.|+++|+||+|+.+.+
T Consensus 72 ~~~~~-~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~ 123 (272)
T 3b1v_A 72 ARDYL-LSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQ 123 (272)
T ss_dssp HHHHH-HTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHT
T ss_pred HHHHH-hcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcC
Confidence 35667 6 59999999999987654 446666654 468999999999986443
No 137
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.37 E-value=1.5e-07 Score=60.93 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=39.9
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
.+.++ ++++++++|+|++++. ..|..++.+.. .+.|+++|+||+||.+..
T Consensus 63 l~~i~-~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 63 LNGIG-KSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHH-HSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT
T ss_pred HHHHh-ccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc
Confidence 35678 8999999999999864 45777777665 478999999999996543
No 138
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.37 E-value=1.6e-07 Score=57.98 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=42.7
Q ss_pred ccchh-cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc----hHHHHhccCccc
Q 038356 4 SAYYN-RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS----MSIFQSLSGLLF 73 (78)
Q Consensus 4 ~~y~~-~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v----~~~~~~~~~~~f 73 (78)
+.|+. +++|++++|+|.++.++.. .|..++.+ .+.|+++|+||+|+.+.+.+ ......++.+.+
T Consensus 76 ~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi 144 (258)
T 3a1s_A 76 RDYLLKGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVV 144 (258)
T ss_dssp HHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEE
T ss_pred HHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEE
Confidence 34540 3899999999999976543 46666654 36899999999998654433 344444454433
No 139
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.33 E-value=2.1e-07 Score=55.29 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=36.4
Q ss_pred cchhcC---CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc
Q 038356 5 AYYNRG---ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS 61 (78)
Q Consensus 5 ~y~~~~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v 61 (78)
.|+ ++ +|++++|+|.++.-+- .-..|+..+.. .+.|+++|+||+|+.+.+.+
T Consensus 108 ~~~-~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~ 162 (223)
T 4dhe_A 108 SYL-QTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQES 162 (223)
T ss_dssp HHH-HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHH
T ss_pred HHH-hcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhH
Confidence 455 55 7889999999875432 22445555554 45899999999999765543
No 140
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.32 E-value=3.3e-07 Score=56.93 Aligned_cols=46 Identities=15% Similarity=-0.016 Sum_probs=34.8
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
+++|++++|+|.++.++...+..| +.+. +.|+++|+||+|+.+.+.
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~ 129 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQN 129 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTT
T ss_pred cCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhh
Confidence 699999999999997766554444 3332 589999999999865443
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.29 E-value=1.3e-06 Score=57.64 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=39.0
Q ss_pred chhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 6 YYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
|+ +++|++++|+|.++.-+ +....|...+.+ .+.|+++|+||+|+.+.+.+.
T Consensus 274 ~~-~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~ 325 (456)
T 4dcu_A 274 AI-DRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDEST 325 (456)
T ss_dssp HH-HHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSH
T ss_pred HH-hhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHH
Confidence 66 89999999999987533 233556666554 458999999999998766553
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.28 E-value=1.6e-06 Score=57.70 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=38.7
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS 61 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v 61 (78)
.++ +++|++++|+|.+++.+... ..|+..+. +.|+++|+||+|+.+.+.+
T Consensus 299 ~~~-~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 299 QAA-NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp CCC-CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGS
T ss_pred hhh-hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhh
Confidence 467 89999999999999877655 45555543 3699999999999765543
No 143
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.27 E-value=2.1e-07 Score=57.43 Aligned_cols=58 Identities=10% Similarity=-0.072 Sum_probs=40.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc----hHHHHhccCcc
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS----MSIFQSLSGLL 72 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v----~~~~~~~~~~~ 72 (78)
+++|++++|+|.++.+++..+..| +.+ .+.|+++|+||+|+.+.+.+ ......++.+.
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~v 143 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSV 143 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCE
T ss_pred CCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCE
Confidence 589999999999998777665444 332 36899999999998654433 23444444433
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.27 E-value=2.5e-06 Score=55.16 Aligned_cols=52 Identities=23% Similarity=0.087 Sum_probs=42.2
Q ss_pred chhcCCcEEEEEEECCChh--hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 6 YYNRGALGALLVYDVTKST--TFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
++ +.+|++++|+|.+++. +.+.+..|.+.+......+.|+++|+||+|+...
T Consensus 254 ~~-~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 254 EA-KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GG-GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HH-HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 46 8999999999999987 6777777777666654467899999999998654
No 145
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.24 E-value=2.4e-06 Score=58.41 Aligned_cols=48 Identities=21% Similarity=0.115 Sum_probs=38.3
Q ss_pred ccccchhcCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTK---STTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
++..++ +.+|++|+|+|.++ +.|++.+..+ +. .++|+++++||+|+.+
T Consensus 86 ~~~r~~-~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 86 LRKRGG-ALADLAILIVDINEGFKPQTQEALNIL----RM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp SBCSSS-BSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TTCCEEEEEECGGGST
T ss_pred HHHHHH-hhCCEEEEEEECCCCccHhHHHHHHHH----HH---cCCeEEEEeccccccc
Confidence 455677 89999999999999 8888776532 22 4689999999999964
No 146
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.23 E-value=1e-06 Score=54.37 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=38.3
Q ss_pred cCCcEEEEEEECCChhhHHHH-HHHHHHHhhhcCCC--CeEEEEeeCCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENV-SRWLKDLGDHADSN--IVIMMIGNKTDLKHLP 59 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~--~~~~lvgnK~Dl~~~~ 59 (78)
+++|++++|+|++.. ++... ..|+..+.+..+.+ .|+++|+||+|+.+.+
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 589999999999764 45554 57888887664433 6999999999997544
No 147
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.23 E-value=1e-06 Score=57.33 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=42.6
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
.++ +++|++++|+|.++..++.....|+..+.... ..|+++|+||+|+.+...
T Consensus 94 ~~~-~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~ 146 (403)
T 3sjy_A 94 SGA-ALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEE 146 (403)
T ss_dssp HHH-TTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHH
T ss_pred HHH-hhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHH
Confidence 456 89999999999999888888888887766543 258999999999976543
No 148
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.22 E-value=3.9e-07 Score=59.92 Aligned_cols=52 Identities=21% Similarity=0.107 Sum_probs=39.5
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC----CC-CeEEEEeeCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD----SN-IVIMMIGNKTDLKH 57 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~-~~~~lvgnK~Dl~~ 57 (78)
..++ +.+|++|+|+|.++ .+|+++..|..+.+++.. .+ .|+++++||+|+.+
T Consensus 102 ~~~~-~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 102 ITGA-SQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp HHTS-SCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred Hhhh-hhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 3567 89999999999999 899977666555544331 23 36899999999976
No 149
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.22 E-value=1.1e-06 Score=54.11 Aligned_cols=48 Identities=4% Similarity=0.002 Sum_probs=37.2
Q ss_pred CCcEEEEEEECCChhhHHHH-HHHHHHHhhhcCCC--CeEEEEeeCCCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENV-SRWLKDLGDHADSN--IVIMMIGNKTDLKHL 58 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~--~~~~lvgnK~Dl~~~ 58 (78)
++|++++|+++++.. +... ..|++.+.+..+.+ .|+++|+||+|+.+.
T Consensus 116 ~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 116 TIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred CCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999998765 5544 57888887765443 499999999999643
No 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.21 E-value=2.3e-06 Score=57.27 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=37.7
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
..|+ +++|++++|+|.+++.+++...-| +.+ .+.|+++|+||+|+.+.
T Consensus 318 ~~~~-~~aD~vl~VvD~s~~~s~~~~~il-~~l-----~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 318 LQEI-EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHH-HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCC
T ss_pred HHHh-hcccEEEEEecCCCCCCHHHHHHH-HHh-----cCCCEEEEEECcccccc
Confidence 3577 899999999999999888764332 332 36799999999999754
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.17 E-value=1.9e-06 Score=56.60 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=34.6
Q ss_pred ccchhcCCcEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFEN--VSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
..|+ ++||++++|+|.++.-+... +..|+.. .+.|+++|+||+|+.+
T Consensus 76 ~~~~-~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 76 LNMI-READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLR 124 (439)
T ss_dssp HHHH-TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHH
T ss_pred HHHH-HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCcc
Confidence 4578 99999999999987655432 3334322 3579999999999853
No 152
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.17 E-value=1.4e-06 Score=55.79 Aligned_cols=57 Identities=16% Similarity=0.014 Sum_probs=40.9
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
...|+ ++++++|+++|.++.+... ..|...++...+.+.|+++|+||+|+.+.....
T Consensus 166 ~~~~i-~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~ 222 (360)
T 3t34_A 166 VRSYI-EKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDA 222 (360)
T ss_dssp HHHHH-HSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCS
T ss_pred HHHHh-hcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCccCCCcccH
Confidence 45788 9999999999876654332 345555555555568999999999997654433
No 153
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.16 E-value=7.2e-07 Score=59.24 Aligned_cols=53 Identities=17% Similarity=0.043 Sum_probs=35.5
Q ss_pred ccchhcCCcEEEEEEECCCh---hhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKS---TTFENVSRWLKDLGDHADSNIV-IMMIGNKTDLKH 57 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-~~lvgnK~Dl~~ 57 (78)
..++ +.+|++|+|+|.++. +||+...+|.+.+......++| +++++||+|+.+
T Consensus 139 ~~~~-~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 139 INGA-SQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp ---T-TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred Hhhc-ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 3466 899999999999986 4565444444444322224576 999999999954
No 154
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.16 E-value=2.1e-06 Score=56.41 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=35.6
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
..++ ++||++++|+|.++..++.. .|+....+ ..+.|+++|+||+|+.+.
T Consensus 77 ~~~~-~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 77 EIAM-DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHH-HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---
T ss_pred HHHH-HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccc
Confidence 4578 99999999999998766554 33333322 256899999999998653
No 155
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.11 E-value=7.5e-06 Score=56.14 Aligned_cols=50 Identities=26% Similarity=0.372 Sum_probs=41.2
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
.++ +.+|++++|+|.++..+......|..... .++|+++++||+|+.+.+
T Consensus 92 r~l-~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 92 RAL-AACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp HHH-HTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC
T ss_pred HHH-HhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC
Confidence 456 89999999999999888888888865543 468999999999997643
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.10 E-value=3.7e-06 Score=57.57 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=40.9
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
.++ +.+|++++|+|.++..++.....|..... .++|+++++||+|+.+.+
T Consensus 90 ~~l-~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 90 RSL-AACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp HHH-HHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC
T ss_pred HHH-HHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc
Confidence 456 89999999999999888777777865543 468999999999997643
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.08 E-value=3.7e-07 Score=58.90 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=32.2
Q ss_pred EEEEECCC-hhhHHHHH-HHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchH
Q 038356 15 LLVYDVTK-STTFENVS-RWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMS 63 (78)
Q Consensus 15 ilv~d~~~-~~s~~~~~-~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~ 63 (78)
+++|++++ ..++..+. .|+..+ ..++|+++|+||+|+...+++..
T Consensus 148 ~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 148 CCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp EEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHH
T ss_pred EEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHH
Confidence 48888887 67777774 555544 36789999999999987665543
No 158
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.05 E-value=1.9e-06 Score=52.08 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=32.6
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCCCCch
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHAD--SNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
.++ +++|++++|+|+++..+- ...|+..+.+..+ ...|+++|+||+|+.+.+.+.
T Consensus 108 ~~~-~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 108 LTS-PGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HTT-TCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred hcC-CCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 456 789999999999765442 1233333332211 235899999999986554443
No 159
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.04 E-value=9e-07 Score=57.27 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=38.2
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
+.++ ++++++++|+|++++++ .|..++.+.. .+.|+++|+||+||.+.
T Consensus 66 ~~~~-~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 66 HRIG-ESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR 113 (369)
T ss_dssp HHHH-HHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT
T ss_pred HHhh-ccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC
Confidence 4567 88999999999999874 4666666555 47899999999999654
No 160
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.03 E-value=9.7e-06 Score=49.45 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=31.8
Q ss_pred chhcCCcEEEEEEECCChhhHH-HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 6 YYNRGALGALLVYDVTKSTTFE-NVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
++ +++|++++|+|.++..... .+..|+...........++++++||+|+.+.
T Consensus 102 ~~-~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 102 SA-PGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HT-TCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred cC-CCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 67 8999999999998733322 2334444332211123456666669999753
No 161
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.02 E-value=1.2e-06 Score=59.38 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=43.8
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchHHHH
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMSIFQ 66 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~~~~ 66 (78)
.++ +++|++++|+|.++....+....|++.+.. .+.|+++|+||+|+.+..++.+..+
T Consensus 184 ~~l-~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~~~~el~~~~~ 241 (550)
T 2qpt_A 184 WFA-ERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMVETQQLMRVYG 241 (550)
T ss_dssp HHH-HHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGSCHHHHHHHHH
T ss_pred HHH-HhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCccCHHHHHHHHH
Confidence 466 889999999999887666677777766653 3478999999999976555544433
No 162
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.98 E-value=1.8e-05 Score=53.51 Aligned_cols=50 Identities=20% Similarity=0.054 Sum_probs=39.2
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
..++ +.+|++++|+|.++..+......|. .+.. .++|+++++||+|+.+.
T Consensus 100 ~~~l-~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 100 YRTL-TAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHGG-GGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCCS
T ss_pred HHHH-HhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCccc
Confidence 4577 9999999999999987777766663 3332 46899999999999654
No 163
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.94 E-value=8.2e-06 Score=50.45 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=37.7
Q ss_pred ccchhcCCcEEE-EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 4 SAYYNRGALGAL-LVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 4 ~~y~~~~a~~~i-lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
..|+ +++++++ +|+|.++.-+......|...+. ..+.|+++|+||+|+.+...
T Consensus 156 ~~~~-~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~ 209 (299)
T 2aka_B 156 MQFV-TKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp HHHH-TSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEECGGGSCTTC
T ss_pred HHHH-cCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEccccCCCCc
Confidence 4578 8898887 6899987655444444555543 24689999999999976544
No 164
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.88 E-value=1.9e-05 Score=48.29 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=32.5
Q ss_pred cCCcEEEEEEECCChhhHH-HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFE-NVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
+++|++++|+|+++....+ .+..|+.++......+.|+++++||.|+.+.
T Consensus 104 ~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 104 PGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp TCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred CCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 7999999999998643222 2233333332111136899999999999753
No 165
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.87 E-value=6.8e-06 Score=55.68 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=37.2
Q ss_pred ccccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
++..++ +.+|++++|+|.++.........|. .+. ..++|+++++||+|+.+
T Consensus 68 ~~~~~~-~~aD~vILVVDa~dg~~~qt~e~l~-~~~---~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 68 MRARGT-QVTDIVILVVAADDGVMKQTVESIQ-HAK---DAHVPIVLAINKCDKAE 118 (537)
T ss_dssp SBBSSS-BSBSSCEEECBSSSCCCHHHHHHHH-HHH---TTTCCEEECCBSGGGTT
T ss_pred HHHHHH-ccCCEEEEEEECCCCccHHHHHHHH-HHH---HcCCcEEEEEecccccc
Confidence 456788 9999999999999865544433332 222 35689999999999964
No 166
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.85 E-value=1.1e-05 Score=57.10 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=39.5
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLK 56 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~ 56 (78)
..++ +.+|++|+|+|.++..++.....|..... .++|+++++||+|+.
T Consensus 116 ~~~l-~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 116 TAAL-RVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHH-HTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred HHHH-HhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 4577 99999999999999988888777754332 468999999999985
No 167
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.83 E-value=8.1e-05 Score=48.47 Aligned_cols=45 Identities=24% Similarity=0.160 Sum_probs=32.3
Q ss_pred cCCcEEEEEEECCC----hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 9 RGALGALLVYDVTK----STTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 9 ~~a~~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
..+|++++|+|.++ +.+++.+..| ... ...|+++++||+|+.+..
T Consensus 103 ~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l--~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 103 SLMDGAILVIAANEPCPQPQTKEHLMAL----EIL--GIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp SCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT--TCCCEEEEEECTTSSCTT
T ss_pred hhCCEEEEEEECCCCCCCchhHHHHHHH----HHc--CCCeEEEEEEccCCCCHH
Confidence 45699999999994 5667666544 211 224799999999997644
No 168
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.83 E-value=1.4e-05 Score=55.42 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=40.9
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
..|+ +++|++++|+|.++..+......|...+.. .+.|+++|+||+|+...
T Consensus 195 ~~~i-~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 195 LGYV-NNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp THHH-HSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG
T ss_pred HHHH-HhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccc
Confidence 4678 999999999999998888887777655543 35689999999998643
No 169
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.83 E-value=9.2e-06 Score=50.11 Aligned_cols=44 Identities=20% Similarity=-0.001 Sum_probs=32.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
+++|++++|+|.++.+ ....|..++.+. ...|+++|+||+|+.+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLK 123 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCc
Confidence 4799999999998864 334455555443 2389999999999854
No 170
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.82 E-value=4.5e-05 Score=50.74 Aligned_cols=54 Identities=17% Similarity=-0.007 Sum_probs=31.9
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHH--HHHHH---HHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENV--SRWLK---DLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~--~~~~~---~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
..++ +++|++++|+|.++..++..+ ..+.. .+.... ...|+++|+||+|+.+.+
T Consensus 129 ~~~~-~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 129 IMGI-SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp HHHH-TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred HHhh-hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence 3567 899999999999997655432 11111 111111 234699999999997643
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.82 E-value=4.7e-05 Score=51.27 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=34.8
Q ss_pred ccccchhcCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 2 INSAYYNRGALGALLVYDVTK---STTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
++..++ +.+|++++|+|.++ +.+.+.+. .+.. .++|+++++||+|+.+
T Consensus 67 ~~~~~~-~~aD~aILVVda~~g~~~qT~e~l~----~~~~---~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 67 MRARGA-QATDIVVLVVAADDGVMPQTIEAIQ----HAKA---AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp SBCSSS-BSCSSEEEEEETTTBSCTTTHHHHH----HHHH---TTCCEEEEEECSSSST
T ss_pred HHHHHH-hhCCEEEEEeecccCccHHHHHHHH----HHHh---cCceEEEEEEeccccc
Confidence 345567 89999999999988 45554432 2221 4688999999999964
No 172
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.81 E-value=1.2e-05 Score=53.06 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=32.1
Q ss_pred cccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 3 NSAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 3 ~~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
...++ ++||++++|+|.++. +.....|+....+. .+.|+++|+||+|+.+.
T Consensus 96 ~~~~~-~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 96 AEIAM-DEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHH-HHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-----
T ss_pred HHhhH-hhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhh
Confidence 34677 899999999997663 33333344443332 56899999999998643
No 173
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.81 E-value=1.1e-05 Score=50.49 Aligned_cols=44 Identities=16% Similarity=0.011 Sum_probs=35.1
Q ss_pred chhcCCcEEEEEEECCChhhHH--HHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 6 YYNRGALGALLVYDVTKSTTFE--NVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
.. ..+|+++.|.|..++.+.. .+.+|. .+.|.++|.||+||.+.
T Consensus 20 ~l-~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 20 KL-KLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HG-GGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH
T ss_pred HH-hhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH
Confidence 45 7999999999999998765 344443 46899999999999764
No 174
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.78 E-value=6.1e-05 Score=49.45 Aligned_cols=49 Identities=16% Similarity=-0.023 Sum_probs=34.4
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
.++ +++|++++|+|.++... .....|+..+... ...|+++|+||+|+.+
T Consensus 123 ~~~-~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 123 TGA-STCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp HHH-TTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred HHH-hhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 457 89999999999988542 3334454444432 2236999999999975
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.74 E-value=3.9e-05 Score=51.84 Aligned_cols=51 Identities=16% Similarity=0.056 Sum_probs=35.1
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
..++ +.+|++|+|+|.++...- ....++..+. ..++|+++++||+|+.+..
T Consensus 100 ~~~l-~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 100 YRTL-TAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp HHGG-GGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCCSC
T ss_pred HHHH-HHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcccc
Confidence 3577 999999999999875321 1122222222 2468999999999997643
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.73 E-value=4.5e-05 Score=52.92 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=40.1
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
..++ +.+|++++|+|.++..++.....|.. +.. .++|+++++||+|+...
T Consensus 95 ~~~l-~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 95 ERSM-RVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp HHHH-HHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred HHHH-HHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence 3567 89999999999999888887777754 332 46899999999999754
No 177
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.72 E-value=2.9e-05 Score=50.48 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=36.0
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIV-IMMIGNKTDLKH 57 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~lvgnK~Dl~~ 57 (78)
.++ +++|++|+|+|.++... .....|+..+.. .++| +++++||+|+.+
T Consensus 94 ~~~-~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 94 TGA-AQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHH-TTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCC
T ss_pred HHH-HHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccC
Confidence 467 89999999999988653 344556555544 3577 899999999974
No 178
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.70 E-value=5.3e-05 Score=47.62 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=34.9
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
..++ +.+|++++|+|.++ +.....|+..... ..+.|+++++||+|+.+
T Consensus 83 ~~~l-~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 83 SSSI-GDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TSCC-CCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC
T ss_pred HHHH-hcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc
Confidence 4567 89999999999977 3334345433322 24689999999999976
No 179
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.68 E-value=7.2e-05 Score=48.60 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=34.4
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIV-IMMIGNKTDLKH 57 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~lvgnK~Dl~~ 57 (78)
..++ +.+|++|+|+|.++.........| ..+.. .++| +++++||+|+.+
T Consensus 84 ~~~~-~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 84 ITGT-APLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHTS-SCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCS
T ss_pred HhhH-hhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCC
Confidence 3467 899999999999985433333333 33333 3577 789999999974
No 180
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.68 E-value=6.3e-05 Score=49.42 Aligned_cols=51 Identities=20% Similarity=0.079 Sum_probs=37.0
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
.++ +.++++++++|.++..+.... .+...+.+ .+.|+++|+||+|+.+.+.
T Consensus 259 ~~i-~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~ 309 (439)
T 1mky_A 259 DSI-EKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHRE 309 (439)
T ss_dssp HHH-HHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGG
T ss_pred HHH-hhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchh
Confidence 356 889999999999987766542 22233332 4689999999999976554
No 181
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.67 E-value=2.4e-05 Score=51.59 Aligned_cols=52 Identities=19% Similarity=0.073 Sum_probs=32.2
Q ss_pred cchhcCCcEEEEEEECCChh---hHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKST---TFENVSRWLKDLGDHADSNIV-IMMIGNKTDLKH 57 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~-~~lvgnK~Dl~~ 57 (78)
.++ +++|++++|+|.++.. +|+...++.+.+......++| +++++||+|+.+
T Consensus 114 ~~~-~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 114 GGA-SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred hhH-hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 456 8999999999998853 222111222222211123456 899999999953
No 182
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.66 E-value=1.2e-05 Score=53.19 Aligned_cols=49 Identities=12% Similarity=-0.047 Sum_probs=32.8
Q ss_pred cchhcCCcEEEEEEECCCh---hhHH---HHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKS---TTFE---NVSRWLKDLGDHADSNIV-IMMIGNKTDLKH 57 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~---~s~~---~~~~~~~~~~~~~~~~~~-~~lvgnK~Dl~~ 57 (78)
.++ +++|++|+|+|.++. .||+ ....+...+.. .++| +++++||+|+.+
T Consensus 104 ~~~-~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 104 TGT-SQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp HSS-SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred hhh-hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 467 899999999999875 2442 23222222222 3454 999999999963
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.64 E-value=7.7e-05 Score=51.77 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=39.4
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
..++ +.+|++++|+|.++..+......|.. +.+ .+.|+++|+||+|+...
T Consensus 93 ~~~l-~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 93 ERSL-RVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHH-HHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred HHHH-HHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 3567 89999999999999888777666643 333 36899999999999764
No 184
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.63 E-value=7.6e-05 Score=49.79 Aligned_cols=46 Identities=26% Similarity=0.131 Sum_probs=34.2
Q ss_pred cchhcCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTK---STTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
.++ +++|++++|+|.++ +.+++.+. .+.. .++|.++++||+|+.+.
T Consensus 92 ~~~-~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 92 SAA-DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGT 140 (482)
T ss_dssp HHT-TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCH
T ss_pred HHH-hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccc
Confidence 456 89999999999988 56665543 2222 34778999999999753
No 185
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.63 E-value=2.8e-05 Score=53.34 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=32.8
Q ss_pred ccchhcCCcEEEEEEECCChh---hHHHHHHHHHHHhhhcC-CCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKST---TFENVSRWLKDLGDHAD-SNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~Dl~~~ 58 (78)
..++ +++|++|+|+|.++.. +|....++...+..... ...|+++|+||+|+.+.
T Consensus 263 ~~~~-~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 263 IMGI-SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp TTTS-SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred HHHH-hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 3567 8999999999998742 11111122222211111 23469999999999763
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.61 E-value=3e-05 Score=48.32 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=34.3
Q ss_pred ccchhcCCcEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTF-ENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
..|+ +++|++++|+|.++.... .....+...+. ..+.|+++|+||+|+.+...
T Consensus 162 ~~~~-~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 162 MAYI-KKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp HHHH-HSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSC
T ss_pred HHHH-cCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcch
Confidence 4577 899999999997544311 11112333332 24689999999999975544
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.60 E-value=3.3e-05 Score=50.93 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=39.6
Q ss_pred ccccchhcCCcEEEEEEECCCh-hhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCch
Q 038356 2 INSAYYNRGALGALLVYDVTKS-TTFENV-SRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSM 62 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~~~-~s~~~~-~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~ 62 (78)
+.+.++ +++++.+++|.++.. .+++.+ ..|+..+. .++|+++|+||+|+...+.+.
T Consensus 129 IaRal~-~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 129 VNRRQM-PDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp -CCCCC-CCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHhc-cCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHH
Confidence 456678 888887888877765 577776 36777664 368999999999987655444
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.59 E-value=0.00011 Score=51.15 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=37.7
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
..++ +.+|++|+|+|.++..+......|. .+.. .++|+++++||+|+...
T Consensus 100 ~~~l-~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 100 ERSM-RVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHH-HHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCcccc
Confidence 4567 8999999999999876665555553 2222 46899999999998754
No 189
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.53 E-value=0.00015 Score=47.15 Aligned_cols=45 Identities=22% Similarity=0.149 Sum_probs=31.9
Q ss_pred cCCcEEEEEEECCC----hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 9 RGALGALLVYDVTK----STTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 9 ~~a~~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
..+|++++|+|.++ +.+++.+..|. .. ...|+++++||+|+.+..
T Consensus 105 ~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~--~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 105 SLMDGAILVIAANEPCPRPQTREHLMALQ----II--GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp GGCSEEEEEEETTSCSSCHHHHHHHHHHH----HH--TCCCEEEEEECGGGSCHH
T ss_pred hhCCEEEEEEECCCCCCChhHHHHHHHHH----Hc--CCCcEEEEEECccCCCHH
Confidence 45699999999984 55666655442 22 225799999999997643
No 190
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.53 E-value=5.2e-05 Score=49.08 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=34.8
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeE-EEEee-CCCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVI-MMIGN-KTDLKHLP 59 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~lvgn-K~Dl~~~~ 59 (78)
.++ +.+|++++|+| +...+...+.|...+... ++|. +++.| |+|+ +..
T Consensus 79 ~~~-~~aD~ailVvd--~~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~ 128 (370)
T 2elf_A 79 TAL-NISDIAVLCIP--PQGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMH 128 (370)
T ss_dssp HHH-HTCSEEEEEEC--TTCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHH
T ss_pred HHH-HHCCEEEEEEc--CCCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHH
Confidence 346 79999999999 555667777776666543 3565 78888 9999 543
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.38 E-value=0.00022 Score=46.94 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=39.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC--CCCeEEEEeeCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHAD--SNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~lvgnK~Dl~~~ 58 (78)
..++.++.++|++ +++++.+..|..++..... ...|.++++||+|+...
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 3689999999998 7788888888888766542 35788999999999764
No 192
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.31 E-value=0.00028 Score=51.96 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=34.9
Q ss_pred cchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q 038356 5 AYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIV-IMMIGNKTDLKH 57 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~lvgnK~Dl~~ 57 (78)
.++ +.+|++|+|+|.++.... ....|+..+... ++| +++++||+|+.+
T Consensus 378 ~ga-s~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 378 TGA-AQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HTS-CCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCC
T ss_pred HHH-hhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccc
Confidence 467 899999999999985432 334454555432 467 789999999975
No 193
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.25 E-value=0.00062 Score=43.23 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=34.6
Q ss_pred cCCcEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTT-FENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
.++|.+++|.|..++.+ ...+..++..+. ..++|.++|.||+||.+.
T Consensus 85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIED 132 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCC
T ss_pred HhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCch
Confidence 68999999999987653 444455544333 256888999999999765
No 194
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.11 E-value=0.00038 Score=45.52 Aligned_cols=18 Identities=28% Similarity=0.135 Sum_probs=15.9
Q ss_pred cchhcCCcEEEEEEECCCh
Q 038356 5 AYYNRGALGALLVYDVTKS 23 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~ 23 (78)
.++ +++|++++|+|.++.
T Consensus 97 ~~i-~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 97 DDL-RMASALIHVVDATGK 114 (397)
T ss_dssp CSS-TTCSEEEEEEETTCC
T ss_pred HHH-hcCCEEEEEEecccc
Confidence 457 999999999999886
No 195
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.04 E-value=0.00051 Score=42.34 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=30.2
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
.+|+++++.+.++......-..+++.+.. .+|+++|+||+|+....
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 37788888876653322222445555543 68999999999986443
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.93 E-value=0.00056 Score=43.70 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=31.9
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
..|+ ++++.+++++...+. .+... .|...++...+.+.|+++|+||+|+.+...
T Consensus 161 ~~~~-~~~~~iiL~v~~a~~-~~~~~-~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~ 214 (353)
T 2x2e_A 161 MQFV-TKENCLILAVSPANS-DLANS-DALKVAKEVDPQGQRTIGVITKLDLMDEGT 214 (353)
T ss_dssp HHHH-TSTTEEEEEEEETTS-CGGGC-HHHHHHHHHCTTCTTEEEEEECGGGSCTTC
T ss_pred HHHH-cCCCeEEEEEecCCC-ccchh-HHHHHHHHhCcCCCceEEEeccccccCcch
Confidence 4577 788877776643332 12211 222223333345789999999999975443
No 197
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.87 E-value=0.0017 Score=44.97 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=34.9
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLK 56 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~ 56 (78)
..++ +.+|++++|+|.++.-.... ..++..+.. .++|+++++||+|+.
T Consensus 92 ~~~l-~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 92 RGAL-EAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH-HHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred HHHH-hhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 3567 89999999999877544332 344444443 358999999999987
No 198
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.80 E-value=0.0029 Score=41.03 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=32.0
Q ss_pred cCCcEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 9 RGALGALLVYDVTKST-TFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
.++|.+++|.+.. +. +...+..++..... .+.|.+||.||+||.+..
T Consensus 129 anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 129 ANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp ECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHH
T ss_pred hcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCch
Confidence 5889999987764 54 44445555544332 356779999999997643
No 199
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.77 E-value=0.00015 Score=44.87 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=32.9
Q ss_pred chhcCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 6 YYNRGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
.. .++|.++.|.|..++.+..+. .+. .. +.|.++|.||+||.+.
T Consensus 18 ~l-~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 18 LL-RLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp HH-TTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCH
T ss_pred HH-hhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCH
Confidence 45 799999999999988776431 111 11 6899999999999764
No 200
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.61 E-value=0.0032 Score=36.66 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=31.2
Q ss_pred cCCcEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFEN--VSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
+.++++++++|+++..++.. +..|... .+.|+++++||+|+..
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVLLTKADKLA 151 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSC
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEecccCCC
Confidence 36899999999998766532 3344321 4588999999999864
No 201
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.47 E-value=7.2e-05 Score=51.12 Aligned_cols=46 Identities=33% Similarity=0.168 Sum_probs=24.9
Q ss_pred ccchhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhcCCCCe-EEEEeeCCCCCC
Q 038356 4 SAYYNRGALGALLVYDVTKS----------TTFENVSRWLKDLGDHADSNIV-IMMIGNKTDLKH 57 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~-~~lvgnK~Dl~~ 57 (78)
..++ +++|++|+|+|.++. .+.+.+ ..+.. .++| +++|+||+|+.+
T Consensus 273 ~~~~-~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 273 IAGA-SSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp CC--------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH---SSCCCEEEEEECGGGGT
T ss_pred HHHH-hhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH---cCCCeEEEEEecccccc
Confidence 3567 899999999999853 333322 22222 2354 899999999965
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.56 E-value=0.0056 Score=36.91 Aligned_cols=48 Identities=13% Similarity=-0.074 Sum_probs=27.3
Q ss_pred cCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCC
Q 038356 9 RGALGALLVYDVTK---STTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLP 59 (78)
Q Consensus 9 ~~a~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~ 59 (78)
.. +.++.+.|.+. ..++.....+...... ..+.|+++|+||+|+...+
T Consensus 137 ~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 137 PY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCCHH
T ss_pred hh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccccc
Confidence 45 67777777643 3333332222211111 1457999999999997644
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.40 E-value=0.00086 Score=42.94 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=29.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
+.+|.+++|+|.+..+.+..+..+ -.+.|.++|.||+|+.+.
T Consensus 191 ~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 191 NMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHH 232 (355)
T ss_dssp TTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGH
T ss_pred HhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcCh
Confidence 689999999998766554332211 123688999999998654
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.05 E-value=0.0034 Score=39.97 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=26.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCc
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTS 61 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v 61 (78)
+.+|++++|+|.++.+.+..+... . .+.|.++|.||+|+.+....
T Consensus 168 ~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~ 212 (341)
T 2p67_A 168 RMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNV 212 (341)
T ss_dssp TTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHH
T ss_pred HhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHH
Confidence 789999999998765432211110 0 13578999999999764333
No 205
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.95 E-value=0.016 Score=33.95 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=26.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
.++++.++|+|.++... ....+... .+.|.++|+||+|+.+
T Consensus 128 ~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 128 LGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAE 168 (221)
T ss_dssp CSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHH
T ss_pred cccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCc
Confidence 46788999999876542 11111111 1367899999999854
No 206
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=94.61 E-value=0.12 Score=35.03 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=31.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
+-+|++++|.|...----....-| +...+ .++|.+++-||+|....
T Consensus 122 ~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 122 TAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREAL 167 (548)
T ss_dssp HSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCCC
T ss_pred HhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchhc
Confidence 678999999998763222222345 33333 46899999999998654
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.38 E-value=0.005 Score=38.65 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.4
Q ss_pred CCCeEEEEeeCCCCCCCCC
Q 038356 42 SNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 42 ~~~~~~lvgnK~Dl~~~~~ 60 (78)
++.|+++|+||.|+...++
T Consensus 154 ~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTSCEEEEECCGGGSCHHH
T ss_pred hcCCEEEEEEeCCCCCHHH
Confidence 5689999999999976443
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=93.73 E-value=0.1 Score=37.03 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=31.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPT 60 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~ 60 (78)
..+|.+++|.|.+..-+-.....+...+. ..+.|+++|.||+|+.+...
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECTTSSCTTC
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCcccCCcch
Confidence 46789999999876432222222333333 34689999999999865433
No 209
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.92 E-value=0.078 Score=33.89 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=23.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
..+|.+++|+|.++.+....+.. .+ -..|.++|.||+|+.+
T Consensus 186 ~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 186 DMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDL 226 (349)
T ss_dssp TTCSEEEEEECCC--------------------CCSCSEEEECCCSGGG
T ss_pred hhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCC
Confidence 68899999999887543322211 11 2357789999999864
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=92.61 E-value=0.21 Score=34.84 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=29.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
|-+|++++|.|...==.-....-|. +..+ .++|.+++-||+|...
T Consensus 107 r~~DgavlvVDaveGV~~qT~~v~~-~a~~---~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 107 RVLDGAVVVFCGTSGVEPQSETVWR-QANK---YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp HHCSEEEEEEETTTCSCHHHHHHHH-HHHH---HTCCEEEEEECSSSTT
T ss_pred HHhCeEEEEEECCCCCchhHHHHHH-HHHH---cCCCeEEEEccccccC
Confidence 5689999999987532211112333 3332 3589999999999754
No 211
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.01 E-value=1.8 Score=25.35 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=41.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCCCCchHHHHhccC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHLPTSMSIFQSLSG 70 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~~~v~~~~~~~~~ 70 (78)
..+|.++++... +..+...+....+.+++...+...+.+|.|+.+-..........+..+.
T Consensus 139 ~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~ 199 (245)
T 3ea0_A 139 EHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRITSDEIEKVIGR 199 (245)
T ss_dssp GGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHHHTS
T ss_pred HHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCCHHHHHHHhCC
Confidence 678998888764 5778888888888887654344567899999987554333344444443
No 212
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=89.84 E-value=0.18 Score=34.77 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=29.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
+-+|++++|.|...==.-.....|. .+.+ .++|.+++-||+|....
T Consensus 89 ~~~DgavlVVDa~~GV~~qT~~v~~-~a~~---~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 89 SVLDGAILLISAKDGVQAQTRILFH-ALRK---MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp TTCSEEECCEESSCTTCSHHHHHHH-HHHH---HTCSCEECCEECCSSSC
T ss_pred HHhCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCeEEEEeccccccC
Confidence 7789999999987521111112342 3333 34788999999997653
No 213
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=86.12 E-value=0.84 Score=29.69 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=30.5
Q ss_pred cCCcEEEEEEECCChhh-HHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTT-FENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
+.||++++|.|.+++-. ++.+..-+....... ...|..++.||.|..+
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGG 196 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSC
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhh
Confidence 78999999999998743 333333332222111 3457788899999743
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.02 E-value=0.27 Score=28.69 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=11.7
Q ss_pred CeEEEEeeCCCCCCC
Q 038356 44 IVIMMIGNKTDLKHL 58 (78)
Q Consensus 44 ~~~~lvgnK~Dl~~~ 58 (78)
.|.++|+||+|+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 165 TADLIVINKIDLADA 179 (226)
T ss_dssp TCSEEEEECGGGHHH
T ss_pred cCCEEEEeccccCch
Confidence 345999999998653
No 215
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=82.89 E-value=1.5 Score=28.37 Aligned_cols=16 Identities=13% Similarity=-0.147 Sum_probs=14.6
Q ss_pred chhcCCcEEEEEEECCC
Q 038356 6 YYNRGALGALLVYDVTK 22 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~ 22 (78)
++ +++|++++|+|.++
T Consensus 93 ~i-r~ad~il~VvD~~~ 108 (363)
T 1jal_A 93 NI-RETDAIGHVVRCFE 108 (363)
T ss_dssp HH-HTCSEEEEEEECSC
T ss_pred HH-HhcCeEEEEEecCC
Confidence 47 99999999999987
No 216
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=80.86 E-value=5.5 Score=22.54 Aligned_cols=46 Identities=0% Similarity=-0.174 Sum_probs=32.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhc--CCCCeEEEEeeCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHA--DSNIVIMMIGNKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~lvgnK~Dl~ 56 (78)
..+|.++++...+.. + ..+....+.+++.. .++.++.+|.|+.|-.
T Consensus 96 ~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 96 MVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp HHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred HHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 568888888865444 4 66666666665543 2567889999999854
No 217
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=77.25 E-value=1.2 Score=28.24 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=22.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
..+|.+++++|.+..+..+.+..+. . ..+.+++.||+|+..
T Consensus 167 ~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 167 DLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGD 207 (337)
T ss_dssp TTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTC
T ss_pred hhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccC
Confidence 5789999999876543322221111 1 234466669999753
No 218
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=73.47 E-value=12 Score=22.26 Aligned_cols=44 Identities=7% Similarity=-0.051 Sum_probs=32.3
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
..+|.+|++... +..+...+....+.+++.. .+.++.+|.|+.+
T Consensus 165 ~~aD~vivv~~~-~~~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 165 LCSDYVIIPMTA-EKWAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEEES-CTTHHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred HHCCeEEEEeCC-ChHHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 578999998876 4566777777777776553 4567788999984
No 219
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=73.31 E-value=13 Score=22.66 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=33.8
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhc-CCCCeEE-EEeeCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHA-DSNIVIM-MIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~-lvgnK~Dl 55 (78)
..+|.++++.. .+..+...+....+.+++.. ..+.+++ +|.|+.+-
T Consensus 178 ~~aD~viiv~~-~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 178 QHADQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp GTCSEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHCCEEEEEec-CcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 67899888875 46777888877777776543 2556655 89999984
No 220
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=71.01 E-value=1.4 Score=28.97 Aligned_cols=23 Identities=4% Similarity=0.034 Sum_probs=13.8
Q ss_pred cchhcCCcEEEEEEECCChhhHHH
Q 038356 5 AYYNRGALGALLVYDVTKSTTFEN 28 (78)
Q Consensus 5 ~y~~~~a~~~ilv~d~~~~~s~~~ 28 (78)
.++ +++|++++|+|.++.+++.+
T Consensus 112 ~~i-r~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 112 SHI-SACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp HHH-HTSSSEEEEEEC--------
T ss_pred HHH-HhcCeEEEEEecCCCcchhh
Confidence 567 99999999999998766543
No 221
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=63.81 E-value=19 Score=20.80 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=33.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
..+|.+|++... +..+...+....+.+++.. +.++.+|.|+.|-..
T Consensus 89 ~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 89 DGCDLLVIPSTP-DALALDALMLTIETLQKLG--NNRFRILLTIIPPYP 134 (209)
T ss_dssp HTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTT
T ss_pred HHCCEEEEEecC-CchhHHHHHHHHHHHHhcc--CCCEEEEEEecCCcc
Confidence 578888888764 5677777777777776532 456789999998653
No 222
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=61.03 E-value=12 Score=24.09 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=14.5
Q ss_pred chhcCCcEEEEEEECCC
Q 038356 6 YYNRGALGALLVYDVTK 22 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~ 22 (78)
++ +++|++++|+|.++
T Consensus 96 ~i-r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 96 HI-REVAAIAHVLRCFP 111 (368)
T ss_dssp HH-HTCSEEEEEEECCC
T ss_pred HH-HhCCEEEEEEECCC
Confidence 57 89999999999986
No 223
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=60.19 E-value=16 Score=18.72 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=13.5
Q ss_pred EEEEEEECCChhhHHHHHH
Q 038356 13 GALLVYDVTKSTTFENVSR 31 (78)
Q Consensus 13 ~~ilv~d~~~~~s~~~~~~ 31 (78)
-++++||+++......+.+
T Consensus 5 ~~lV~YDI~~~kr~~kv~k 23 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKLAN 23 (90)
T ss_dssp EEEEEEECCCHHHHHHHHH
T ss_pred EEEEEEeCCChHHHHHHHH
Confidence 4789999998765555543
No 224
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=56.61 E-value=9.3 Score=20.96 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=25.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
.+..+|+.=|.+.++.-..+..+..+ .++|++.+++|.+|
T Consensus 40 ka~LViiA~D~~p~~~~~~i~~lc~~------~~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 40 QALFVCVAEDCDQGNYVKLVKALCAK------NEIKYVSVPKRASL 79 (126)
T ss_dssp CCSEEEEESSCCSTTHHHHHHHHHHH------TTCCEEEESCSHHH
T ss_pred CceEEEEeCCCChHHHHHHHHHHHHH------hCCCEEEECCHHHH
Confidence 56667777677655554444333222 57999999888876
No 225
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=56.37 E-value=29 Score=20.53 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=30.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHH---hhhcCCCCeEE-EEeeCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDL---GDHADSNIVIM-MIGNKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~---~~~~~~~~~~~-lvgnK~Dl~ 56 (78)
..+|.+|++...+ ..++..+....+.+ .+...++.+++ +|.|+.|-.
T Consensus 132 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 132 AAAEGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHCSEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHCCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 4688999988754 45555554444444 33333567764 899999864
No 226
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=55.65 E-value=31 Score=20.76 Aligned_cols=48 Identities=6% Similarity=0.137 Sum_probs=28.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHH---hhhcCCCCeE-EEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDL---GDHADSNIVI-MMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~---~~~~~~~~~~-~lvgnK~Dl~~ 57 (78)
..+|.++++... +..+...+....+.+ .+...++.++ -+|-|+.|...
T Consensus 175 ~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 175 VASDYVMIPLQA-EEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp HHCSEEEEEECG-GGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred HHCCeEEEEecC-cHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 457888888754 344555554444443 3333356774 48999998653
No 227
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=55.55 E-value=21 Score=18.70 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=12.6
Q ss_pred EEEEEEECCChhhHHHHHHH
Q 038356 13 GALLVYDVTKSTTFENVSRW 32 (78)
Q Consensus 13 ~~ilv~d~~~~~s~~~~~~~ 32 (78)
-++++||+++......+.+.
T Consensus 4 ~~lV~YDI~~~kr~~kv~k~ 23 (101)
T 2ivy_A 4 LYLIFYDITDDNLRNRVAEF 23 (101)
T ss_dssp EEEEEEEECCHHHHHHHHHH
T ss_pred EEEEEEeCCChHHHHHHHHH
Confidence 46788888876555554433
No 228
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=54.03 E-value=20 Score=18.78 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=25.6
Q ss_pred cCCcEEEEEEECCChhhHHH--HHHHHHHHhhhcCCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFEN--VSRWLKDLGDHADSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~lvgnK 52 (78)
..+|+++++..+-.-.-... ++.+++.+.... .+.++.++|+-
T Consensus 45 ~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l-~~k~~~~~~t~ 89 (137)
T 2fz5_A 45 ASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKL-KGKKVGLFGSY 89 (137)
T ss_dssp HTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGC-SSCEEEEEEEE
T ss_pred hcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhc-CCCEEEEEEec
Confidence 57888988876643221122 555666554432 56788888874
No 229
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=53.66 E-value=31 Score=20.12 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=32.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC------CCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHAD------SNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------~~~~~~lvgnK~Dl 55 (78)
..+|.++++... +..+...+....+.+..... +..++.+|.|+.+-
T Consensus 134 ~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 134 YFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred HhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 578998888764 57778887777777754431 23567899999875
No 230
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=53.28 E-value=14 Score=23.14 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=31.4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
|+|+++++--. ...+-+.+..|++.+-+..++++|+++-= +..++.
T Consensus 102 Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~ 151 (313)
T 3dz1_A 102 GAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMT 151 (313)
T ss_dssp TCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCC
T ss_pred CCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCC
Confidence 78998886444 34567788888888876654458987753 455654
No 231
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=52.37 E-value=25 Score=19.82 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=28.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhh---hcCCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGD---HADSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~---~~~~~~~~~lvgnK 52 (78)
..+|++|+..-+-.-.--..++.|++.+.. ..-.+.++.++++-
T Consensus 51 ~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~ 97 (188)
T 2ark_A 51 LWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSS 97 (188)
T ss_dssp HHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEE
T ss_pred HhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEEC
Confidence 568899998876654444456777777654 11245677777774
No 232
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=50.71 E-value=12 Score=21.50 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=23.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
..+|++|++.-+-+-.--..++.|++.+....-.+.|++++++
T Consensus 68 ~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 68 CNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp HHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred HHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence 5678888877655433222335555444322224567777776
No 233
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=49.83 E-value=26 Score=18.04 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=13.5
Q ss_pred EEEEEEECCChhhHHHHHHH
Q 038356 13 GALLVYDVTKSTTFENVSRW 32 (78)
Q Consensus 13 ~~ilv~d~~~~~s~~~~~~~ 32 (78)
-++++||+++...-..+.+.
T Consensus 5 ~vlV~YDI~~~krr~kv~k~ 24 (91)
T 3exc_X 5 KLLVVYDVSDDSKRNKLANN 24 (91)
T ss_dssp EEEEEEECCSHHHHHHHHHH
T ss_pred EEEEEEeCCCchHHHHHHHH
Confidence 57899999987554444333
No 234
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=48.24 E-value=27 Score=22.36 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=26.4
Q ss_pred CCcEEEEEEECCChh----------hHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKST----------TFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
+.-.++++|++.+++ +.+.=+.|++.+.... .+.|+++|
T Consensus 89 g~~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i-~~~~~vvI 137 (315)
T 1uoz_A 89 GAMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGL-GSSPATII 137 (315)
T ss_dssp TCBCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHh-CCCceEEE
Confidence 334578899998877 5555578988886655 34455554
No 235
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=47.61 E-value=36 Score=19.10 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=26.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
++|.+.+ +.+...+.+.++...+.+++...+++++++-|.
T Consensus 69 ~~diV~l--S~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 69 DVDVIGV--SILNGAHLHLMKRLMAKLRELGADDIPVVLGGT 108 (161)
T ss_dssp TCSEEEE--EESSSCHHHHHHHHHHHHHHTTCTTSCEEEEEC
T ss_pred CCCEEEE--EeechhhHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 5565554 444456777788888888776435677776664
No 236
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=47.53 E-value=11 Score=23.72 Aligned_cols=44 Identities=20% Similarity=0.096 Sum_probs=27.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIM-MIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-lvgnK~Dl 55 (78)
..+|.+|+.=|+++..+.+.+....+.+.+. +..+++ +.|| -|.
T Consensus 78 ~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l--~~~~v~~V~GN-HD~ 122 (296)
T 3rl5_A 78 PYGDILLHTGDFTELGLPSEVKKFNDWLGNL--PYEYKIVIAGN-HEL 122 (296)
T ss_dssp CSCSEEEECSCCSSSCCHHHHHHHHHHHHTS--CCSEEEECCCT-TCG
T ss_pred CCCCEEEECCcccCCCCHHHHHHHHHHHHhC--CCCeEEEEcCC-ccc
Confidence 5789999999999876665555555545443 223444 4455 554
No 237
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=47.39 E-value=33 Score=23.14 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=25.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeE-EEEeeCCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVI-MMIGNKTDLKH 57 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~lvgnK~Dl~~ 57 (78)
.+|.+++|.|.+....-.. ....+.+ ..|+ .+|.||.|...
T Consensus 213 ~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 213 QPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDGHA 254 (504)
T ss_dssp CCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTSCC
T ss_pred cCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCcccc
Confidence 6789999999876433111 1222222 1564 78899999864
No 238
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=46.15 E-value=27 Score=20.25 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=25.3
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
..||++|++.-+=+-.--..++.|++.+....-.+.|++++++
T Consensus 84 ~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t 126 (191)
T 3k1y_A 84 SASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAAT 126 (191)
T ss_dssp HHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEE
T ss_pred HHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEe
Confidence 5789999877655443333445566555432224567777766
No 239
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=45.76 E-value=37 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.3
Q ss_pred ccchhcCCcEEEEEEECCChhhHHHHHHHHHHHhhh
Q 038356 4 SAYYNRGALGALLVYDVTKSTTFENVSRWLKDLGDH 39 (78)
Q Consensus 4 ~~y~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~ 39 (78)
..|+ ..+.|.++|+|.++. +.+....|.+.+++.
T Consensus 115 ~~~l-~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFL-SEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHH-HTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHH-HhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 3466 778898999999998 667777887777654
No 240
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=45.71 E-value=30 Score=22.15 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=31.7
Q ss_pred hhcCCcEEEEEEECCChh------hHHH----HHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKST------TFEN----VSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~------s~~~----~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ +++|.+|++-.+.+.. -|+. ++...+.+.+++++++.+++++|=.|.
T Consensus 98 ~-~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~ 155 (345)
T 4h7p_A 98 F-DGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANT 155 (345)
T ss_dssp T-TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred h-CCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcch
Confidence 5 7999999987765533 2221 244555566666678888899986663
No 241
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=45.40 E-value=26 Score=21.36 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=25.7
Q ss_pred CCcEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCCC
Q 038356 10 GALGALLVYDVTKS--TTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKHL 58 (78)
Q Consensus 10 ~a~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~~ 58 (78)
.+++.+++.|-+.. +..+ ...+..+.+ . .++++|.+|.|.-..
T Consensus 111 Ral~~lllldep~~gL~~lD--~~~l~~L~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLD--LEFMKHLSK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHH--HHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred eeeeeeEEEecCCCcCCHHH--HHHHHHHHh---c-CcEEEEEeccccCCH
Confidence 46788888875422 2222 223333332 3 899999999997543
No 242
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=45.37 E-value=29 Score=21.63 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=28.4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG 50 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg 50 (78)
|+|+++++--.-.+.|-+.+..+++.+-+.. +++|+++-=
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~~lPiilYn 145 (303)
T 2wkj_A 106 GFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA-DGLPMVVYN 145 (303)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCEEEecCCCCCCCCHHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 8899988866555557778877887776654 348887753
No 243
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=44.75 E-value=37 Score=18.43 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=25.4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
++|.+.+.. +...+...+++..+.+++...+++++++-|.
T Consensus 54 ~~d~v~lS~--~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 54 KADAILVSS--LYGQGEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp TCSEEEEEE--CSSTHHHHHTTHHHHHHHTTCTTCEEEEEES
T ss_pred CCCEEEEEe--cCcCcHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 566665544 3455666777788888776534677766664
No 244
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.07 E-value=33 Score=17.62 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=23.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE-eeCCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI-GNKTDLKH 57 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv-gnK~Dl~~ 57 (78)
.+..+|+.=| .+++.-..+..+. +. .++|++.+ ++|.+|..
T Consensus 31 ka~lViiA~D-~~~~~~~~i~~~c----~~--~~ip~~~~~~s~~eLG~ 72 (99)
T 3j21_Z 31 GAKLIIVAKN-APKEIKDDIYYYA----KL--SDIPVYEFEGTSVELGT 72 (99)
T ss_dssp CCSEEEEECC-CCHHHHHHHHHHH----HH--TTCCEEEECCCSCGGGG
T ss_pred CccEEEEeCC-CCHHHHHHHHHHH----HH--cCCCEEEeCCCHHHHHH
Confidence 4556666666 3444433333332 11 57998666 99999853
No 245
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=43.32 E-value=46 Score=19.08 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=30.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
..+|.++++... +..++..+....+...+.. -..+.++.|+.+
T Consensus 152 ~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 152 KAVDMMIAVIEP-NLNSIKTGLNIEKLAGDLG--IKKVRYVINKVR 194 (254)
T ss_dssp TTCSEEEEEECS-SHHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred HHCCEEEEecCC-CHHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence 678999988865 5677777766666444442 245678889998
No 246
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=42.71 E-value=51 Score=20.46 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=29.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG 50 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg 50 (78)
.|+|+++++--.-.+.+-+.+..|++.+-+.. ++|+++-=
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilYn 137 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV--EIPVVIYT 137 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC--SSCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEE
Confidence 38899999876655667778888888887664 48887764
No 247
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=42.57 E-value=40 Score=19.49 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=23.8
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhc---CCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHA---DSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~lvgnK 52 (78)
+.||++|++.-.=+..-=..++.|++.+.... -.+.|+.++++=
T Consensus 72 ~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 72 ATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 57888888765443322222345555554311 145677777763
No 248
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=42.50 E-value=17 Score=19.58 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=24.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLK 56 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~ 56 (78)
.+..+++.-|++..+-...+..+. +. .++|++.+++|.+|.
T Consensus 41 ka~LVvIA~D~~p~~i~~~l~~lC----~~--~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 41 KAKLVLIANDVDPIELVVFLPALC----KK--MGVPYAIVKGKARLG 81 (113)
T ss_dssp CCSEEEECSCCSSHHHHTTHHHHH----HH--TTCCCEECSCSTTTH
T ss_pred CceEEEEeCCCCHHHHHHHHHHHH----HH--cCCCEEEECCHHHHH
Confidence 455666666665433222222222 11 579999999999984
No 249
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=41.94 E-value=39 Score=21.26 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=31.6
Q ss_pred chhcCCcEEEEEEECCCh------hhH----HHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 6 YYNRGALGALLVYDVTKS------TTF----ENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~------~s~----~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
-+ ++||.+|+.-..... +.+ .-++...+.+.+.+ ++..+++++|=+|.
T Consensus 70 a~-~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~ 127 (321)
T 3p7m_A 70 DL-ENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDI 127 (321)
T ss_dssp GG-TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred HH-CCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHH
Confidence 35 799999998654432 222 22356666777776 78888888887664
No 250
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=41.81 E-value=17 Score=13.72 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhh
Q 038356 26 FENVSRWLKDLGD 38 (78)
Q Consensus 26 ~~~~~~~~~~~~~ 38 (78)
.++++.|.+.++-
T Consensus 7 vDSV~rWmeDLr~ 19 (22)
T 3ro3_B 7 VDSVQRWMEDLKL 19 (26)
T ss_pred hHHHHHHHHHHHh
Confidence 3567889988753
No 251
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=41.40 E-value=41 Score=19.56 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=14.3
Q ss_pred cCCcEEEEEEECCChhhH
Q 038356 9 RGALGALLVYDVTKSTTF 26 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~ 26 (78)
.++|.+++.=|+.+....
T Consensus 31 ~~~D~vi~~GDl~~~~~~ 48 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEAL 48 (260)
T ss_dssp HCCSEEEEESCCCCCHHH
T ss_pred cCCCEEEECCCCCCccCc
Confidence 368999999999887543
No 252
>4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A*
Probab=41.36 E-value=42 Score=22.34 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=23.7
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCC
Q 038356 16 LVYDVTKSTTFENVSRWLKDLGDHADSNI 44 (78)
Q Consensus 16 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 44 (78)
++.|.+|++|-.....|..++....+..+
T Consensus 300 ~~VDl~d~~s~~~a~~WW~~lT~~GgEGM 328 (427)
T 4e6n_A 300 ILVDVTDAESVDKGIKWWEDLTASGGEGM 328 (427)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEeeCCCHHHHHHHHHHHHHHhcCCCcee
Confidence 46799999999999999999987665443
No 253
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=40.55 E-value=46 Score=18.74 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=26.5
Q ss_pred CCcEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCC
Q 038356 10 GALGALLVYDVTKST-TFENVSRWLKDLGDHADSNIVIM-MIGNKTDL 55 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~-lvgnK~Dl 55 (78)
++|.+++.=|+.+.. ..+....+++.+.+. ..|++ +.|| -|.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GN-HD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGP-QDA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCT-TSC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCC-CCc
Confidence 789999999998765 555555555555442 34554 5566 443
No 254
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=40.53 E-value=37 Score=19.02 Aligned_cols=42 Identities=5% Similarity=-0.134 Sum_probs=22.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
..||++|++.-+=.-.--..++.|++.+.... .+.|++++++
T Consensus 83 ~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l-~gK~~~~~~~ 124 (191)
T 1t0i_A 83 NALDIIVFVTPQYNWGYPAALKNAIDRLYHEW-HGKPALVVSY 124 (191)
T ss_dssp HTCSEEEEEEECBTTBCCHHHHHHHHTCSTTT-TTCEEEEEEE
T ss_pred HhCCEEEEEeceECCCCCHHHHHHHHHHHhhc-CCCEEEEEEe
Confidence 57888888776655432233456665553222 3445555543
No 255
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=40.30 E-value=41 Score=17.69 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=26.8
Q ss_pred cCCcEEEEEEECCChhhHH--HHHHHHHHHhhhcCCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFE--NVSRWLKDLGDHADSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~lvgnK 52 (78)
..+|.++++..+-...-.. .+..+++.+... -++.++.++|+-
T Consensus 44 ~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t~ 88 (138)
T 5nul_A 44 LNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGSY 88 (138)
T ss_dssp TTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEEE
T ss_pred hhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEec
Confidence 5788999888764432221 345566666543 356788888873
No 256
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=40.19 E-value=42 Score=20.87 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=31.3
Q ss_pred chhcCCcEEEEEEECCChh------hH----HHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 6 YYNRGALGALLVYDVTKST------TF----ENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~------s~----~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
-+ ++||.+|+.-...... -+ .-++...+.+.+.+ ++..+++++|=.|.
T Consensus 66 a~-~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsNPvd~ 123 (294)
T 1oju_A 66 LL-KGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDV 123 (294)
T ss_dssp GG-TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHH
T ss_pred Hh-CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcchH
Confidence 35 7999999987655322 12 11245556666664 78888899887664
No 257
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=39.65 E-value=31 Score=21.37 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=30.8
Q ss_pred cCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhcCC--CCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKS-TTFENVSRWLKDLGDHADS--NIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~--~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+ .|-+.+..++..+-+.. + +.|+++-= +..|+.
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-p~~~lPiilYn~P~~tg~~l~ 150 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFAWFSAVFSKI-GKDARDILVYNIPSVTMVTLS 150 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHH-CTTCCCEEEEECHHHHSCCCC
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc-CCCCCcEEEEECcchhCcCCC
Confidence 378888887554444 56677877777776654 3 68887753 355553
No 258
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=39.63 E-value=45 Score=20.68 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=31.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.|-+.+..+++.+-+.. ++|+++-= +..++.
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l~ 151 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQSV--DIPVLLYNVPGRTGCEIS 151 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEEECHHHHSCCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCchhhCcCCC
Confidence 37899998865544556677877888876654 68888763 355554
No 259
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=39.60 E-value=47 Score=20.47 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
|+|+++++--.-.+.+-+.+..+++.+-+.. +.|+++-
T Consensus 96 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilY 133 (291)
T 3tak_A 96 GADAALLVTPYYNKPTQEGLYQHYKAIAEAV--ELPLILY 133 (291)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 7899988765544556677777888876653 6888776
No 260
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=39.37 E-value=59 Score=19.22 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=28.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIM-MIGNKTDL 55 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-lvgnK~Dl 55 (78)
.+|.+|++...+ ..+...+...++.+++. +.+++ +|.|+.|.
T Consensus 152 ~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 152 KPTGVVVVSTPQ-ELTAVIVEKAINMAEET---NTSVLGLVENMSYF 194 (262)
T ss_dssp CCSEEEEEECSS-SCCHHHHHHHHHHHHTT---TCCEEEEEETTCCE
T ss_pred cCCeEEEEecCc-cchHHHHHHHHHHHHhC---CCCEEEEEECCCcc
Confidence 678888887644 45566666666666543 35655 89999874
No 261
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=39.37 E-value=11 Score=21.10 Aligned_cols=43 Identities=12% Similarity=-0.032 Sum_probs=22.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
..+|++|++.-+=+-.--..++.|++.+....-.+.|+.++++
T Consensus 62 ~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~ 104 (174)
T 3gfs_A 62 TKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAV 104 (174)
T ss_dssp HHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEE
T ss_pred HHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEE
Confidence 4677777776655443333344454433221113456666664
No 262
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=39.34 E-value=47 Score=20.81 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=31.3
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.+-+.+..|++.+-+.. +.|+++-= +..++.
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l~ 166 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV--AIPQILYNVPGRTSCDML 166 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS--CSCEEEEECHHHHSCCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCCCC
Confidence 37899988865444556677877888876654 68888763 355553
No 263
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=39.12 E-value=40 Score=17.18 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=18.0
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 16 LVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 16 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
++|++++++.+...-.....+.+.. ++..+.++
T Consensus 3 vv~~v~d~~~~~~al~~~~n~~~~~-~~~~v~vv 35 (108)
T 2pd2_A 3 VVVQIKDFDKVPQALRSVINLYNDI-KDAEIEVV 35 (108)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHS-TTCEEEEE
T ss_pred EEEEeCChHHHHHHHHHHHHHHhhC-CCCeEEEE
Confidence 3566667777766655555444433 34454444
No 264
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=38.80 E-value=46 Score=20.74 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=31.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.|-+.+..+++.+-+.. ++|+++-= +..++.
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l~ 158 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT--ELPMLLYDIPGRSAVPIE 158 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC--SSCEEEEECHHHHSSCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCCCC
Confidence 37899988865544556777877877776653 68888773 355653
No 265
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=38.65 E-value=50 Score=20.38 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=31.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.|-+.+..++..+-+.. ++|+++-= +..++.
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiilYn~P~~tg~~l~ 143 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS--TIPIIVYNIPGRSAIEIH 143 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEEECHHHHSCCCC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCccccCcCCC
Confidence 38899988876555556778877877776653 58887753 455553
No 266
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=38.63 E-value=63 Score=19.66 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 23 STTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 23 ~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
...|+.+...+..+.+.....+|++|+|=.-|...
T Consensus 142 v~yyEq~l~~L~~~~~~~~~~vPI~vIGI~~~~~~ 176 (223)
T 1dfm_A 142 SLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFET 176 (223)
T ss_dssp BCCHHHHHHHHHHHHHTTCCCSCEEEEEEECCTTC
T ss_pred chhHHHHHHHhhhhccCCCCCCCEEEEEecCcccc
Confidence 34577766656555533458899999999888753
No 267
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=38.56 E-value=47 Score=20.87 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=29.5
Q ss_pred chhcCCcEEEEEEECCChh------hHH----HHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 6 YYNRGALGALLVYDVTKST------TFE----NVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~~------s~~----~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
-+ ++||.+|+.-...... -+. -++...+.+.+++ ++..+++++|=.|.
T Consensus 66 a~-~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~ 123 (314)
T 3nep_X 66 PT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVANPLDV 123 (314)
T ss_dssp GG-TTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCSSHHH
T ss_pred Hh-CCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCCchhH
Confidence 35 7999999986554322 221 1245556666665 77888898887664
No 268
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=38.52 E-value=50 Score=20.45 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=31.3
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.+-+.+..|++.+-+.. +.|+++-= +..++.
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l~ 150 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT--SIPMIIYNVPGRTVVSMT 150 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEEECHHHHSSCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEECCchhccCCC
Confidence 37899988865544556677877888876654 68888763 455553
No 269
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=38.51 E-value=51 Score=20.34 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=31.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.|-+.+..++..+-+.. +.|+++-= +..|+.
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l~ 143 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQEV--DIPIIIYNIPSRTCVEIS 143 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEEECHHHHSCCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCcCCC
Confidence 38899988866555557778877877776653 57877653 355553
No 270
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=38.16 E-value=51 Score=20.29 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
|+|+++++--.-.+.|-+.+..+++.+-+.. +.|+++-
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiilY 132 (289)
T 2yxg_A 95 GADAVLSITPYYNKPTQEGLRKHFGKVAESI--NLPIVLY 132 (289)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 8899988766555557778877777776653 5787765
No 271
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=38.10 E-value=42 Score=20.72 Aligned_cols=45 Identities=11% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
|+|+++++--.-.+.+-+.+..|++.+-+.. ++|+++-= +..++.
T Consensus 97 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilYn~P~~tg~~l~ 145 (292)
T 3daq_A 97 GADAIMLITPYYNKTNQRGLVKHFEAIADAV--KLPVVLYNVPSRTNMTIE 145 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CSCEEEEECHHHHSCCCC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Confidence 8899998865444556677877888776653 58887762 455553
No 272
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=37.67 E-value=55 Score=20.20 Aligned_cols=39 Identities=8% Similarity=0.069 Sum_probs=27.9
Q ss_pred cCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 9 RGALGALLVYDVTKS-TTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
.|+|+++++--.-.+ .|-+.+..+++.+-+.. ++|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiilY 129 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS--PHPVYLY 129 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEEE
Confidence 388999888665555 57778877887776653 5787765
No 273
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=37.63 E-value=43 Score=17.19 Aligned_cols=40 Identities=5% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
..|.+++-+++.+.+.++-++. +++.. +.+|++++....|
T Consensus 49 ~~dlvi~d~~l~~~~g~~~~~~----l~~~~-~~~~ii~ls~~~~ 88 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMDILRE----IKKIT-PHMAVIILTGHGD 88 (143)
T ss_dssp TCCEEEEESCCSSSCHHHHHHH----HHHHC-TTCEEEEEECTTC
T ss_pred CCCEEEEeCCCCCCcHHHHHHH----HHHhC-CCCeEEEEECCCC
Confidence 4566666666666556554333 33333 6789988877665
No 274
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=37.63 E-value=53 Score=20.41 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=28.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
.|+|+++++--.-.+.|-+.+..++..+-+. .++|+++-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a--~~lPiilY 144 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAES--TPLPVMLY 144 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHT--CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Confidence 3889998887655555667887787777654 35888765
No 275
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=37.12 E-value=54 Score=18.32 Aligned_cols=45 Identities=7% Similarity=-0.007 Sum_probs=26.8
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDH----ADSNIVIMMIGNKT 53 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~lvgnK~ 53 (78)
..+|++|+..-+-.-.--..++.|++.+... .-.+.|+.++++--
T Consensus 70 ~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g 118 (200)
T 2a5l_A 70 KNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTA 118 (200)
T ss_dssp HTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBS
T ss_pred HHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecC
Confidence 6899999988765543333446666655331 11456777776643
No 276
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=37.00 E-value=56 Score=20.34 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=31.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.+-+.+..++..+-+.. ++|+++-= +..|+.
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilYn~P~~tg~~l~ 159 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT--EVPICLYDIPGRSGIPIE 159 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEEECHHHHSSCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCcCCC
Confidence 38899988866555556777877887776653 58887753 355553
No 277
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=36.92 E-value=53 Score=20.63 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=31.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.+-+.+..+++.+-+.. +.|+++-= +..|+.
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l~ 165 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI--SIPIIIYNIPSRSVIDMA 165 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEEECHHHHSCCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC--CCCEEEEeCchhhCCCCC
Confidence 37899988865544556677877888876653 68888763 455654
No 278
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=36.86 E-value=55 Score=20.39 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
|+|+++++--.-.+.|-+.+..+++.+-+. .+.|+++-= +..|+.
T Consensus 107 Gadavlv~~P~y~~~s~~~l~~~f~~va~a--~~lPiilYn~P~~tg~~l~ 155 (306)
T 1o5k_A 107 GANGVLVVTPYYNKPTQEGLYQHYKYISER--TDLGIVVYNVPGRTGVNVL 155 (306)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHTT--CSSCEEEEECHHHHSCCCC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCccccCcCCC
Confidence 889988876555555667887788777654 358887753 355553
No 279
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=36.59 E-value=55 Score=20.16 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=27.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
.|+|+++++--.-.+.|-+.+..+++.+-+. .+.|+++-
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a--~~lPiilY 133 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH--TDLPQILY 133 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTT--CSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Confidence 3789998876655555677787777777654 35787765
No 280
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=36.41 E-value=56 Score=20.49 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=30.2
Q ss_pred hhcCCcEEEEEEECCChh------hHH----HHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKST------TFE----NVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~------s~~----~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ +++|.+|+.-...... -++ -++...+.+.+++ ++..+++++|=.|.
T Consensus 67 ~-~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvd~ 123 (312)
T 3hhp_A 67 L-EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNT 123 (312)
T ss_dssp H-TTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHH
T ss_pred h-CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecCcchh
Confidence 6 8999999987554422 221 1245556666665 67778888886653
No 281
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=35.91 E-value=68 Score=18.89 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=33.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKT 53 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~ 53 (78)
++|.+.+.++.....+...+++..+.+++... +++|+++-|.=.
T Consensus 143 ~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 143 KGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp TTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSC
T ss_pred CCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 56777777788888889889999999987753 367876666533
No 282
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=35.39 E-value=57 Score=20.46 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=30.8
Q ss_pred chhcCCcEEEEEEECCCh------hhHH----HHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 6 YYNRGALGALLVYDVTKS------TTFE----NVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~~------~s~~----~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
-+ ++||.+|+.-..... +-+. -++...+.+.+.+ ++..+++++|=.|.
T Consensus 75 a~-~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPvd~ 132 (315)
T 3tl2_A 75 DT-ADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPVDA 132 (315)
T ss_dssp GG-TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred Hh-CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChHHH
Confidence 35 799999998654432 2222 1245666666665 77888888886654
No 283
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=35.29 E-value=58 Score=20.63 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=26.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK 52 (78)
..+|+++++..+-.-.--..++.+++.+..... .+.++.++++=
T Consensus 306 ~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~ 350 (414)
T 2q9u_A 306 YDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAF 350 (414)
T ss_dssp HTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEE
T ss_pred HhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEec
Confidence 578999998765554333345666666554332 45666666653
No 284
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=34.39 E-value=28 Score=19.68 Aligned_cols=44 Identities=11% Similarity=-0.025 Sum_probs=20.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhh---cCCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDH---ADSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~~lvgnK 52 (78)
..+|++|++.-+=.-.--..++.|++.+... .-.+.|++++++-
T Consensus 71 ~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 71 RAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193)
T ss_dssp HHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC
T ss_pred HhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeC
Confidence 4567777654332222112335555555432 1134566666654
No 285
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=34.03 E-value=74 Score=19.76 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=29.3
Q ss_pred hhcCCcEEEEEEECCCh------h-hHHH---HHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 7 YNRGALGALLVYDVTKS------T-TFEN---VSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~------~-s~~~---~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
+ ++||.+|+.-..... + -+.+ +++..+.+.+.+ ++..++++.|=+|
T Consensus 65 ~-~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~ 120 (308)
T 2d4a_B 65 M-RGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVD 120 (308)
T ss_dssp G-TTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred h-CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 6 899999988544431 1 1222 456666777776 7777788888444
No 286
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=33.74 E-value=42 Score=19.43 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=25.5
Q ss_pred cCCcEEEEEE---ECCChhhHHHHHHHHHHHhhhc-CCCCeEEEEeeC
Q 038356 9 RGALGALLVY---DVTKSTTFENVSRWLKDLGDHA-DSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~---d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~lvgnK 52 (78)
..||++|++- .-+=+..+.+.-+|+....... =.+.|+.+++.=
T Consensus 66 ~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S 113 (190)
T 3u7r_A 66 EHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTS 113 (190)
T ss_dssp HTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEE
T ss_pred HhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeC
Confidence 6789988864 3333556777777764211111 145787777653
No 287
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=33.42 E-value=87 Score=19.44 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=27.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
+.+.+++.+ +.+-..+..++..+.....+...++++|.|.+
T Consensus 76 ~~~~~~~~~----pk~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~ 116 (343)
T 2pjd_A 76 DCDTLIYYW----PKNKPEAQFQLMNLLSLLPVGTDIFVVGENRS 116 (343)
T ss_dssp TCSEEEEEC----CSSHHHHHHHHHHHHTTSCTTCEEEEEEEGGG
T ss_pred CCCEEEEEC----CCChHHHHHHHHHHHHhCCCCCEEEEEEecCC
Confidence 345555554 33344556777777777767889999998775
No 288
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=33.36 E-value=64 Score=20.52 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=27.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
|+|+++++--.-.+.|-+.+..++..+-+. .++|+++-
T Consensus 126 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a--~~lPiilY 163 (343)
T 2v9d_A 126 GADGIVVINPYYWKVSEANLIRYFEQVADS--VTLPVMLY 163 (343)
T ss_dssp TCSEEEEECCSSSCCCHHHHHHHHHHHHHT--CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Confidence 889988886655555677787777777654 35787765
No 289
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=33.03 E-value=54 Score=20.20 Aligned_cols=39 Identities=5% Similarity=0.038 Sum_probs=27.2
Q ss_pred cCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 9 RGALGALLVYDVTKS-TTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
.|+|+++++--.-.+ .|-+.+..++..+-+.. +.|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiilY 129 (288)
T 2nuw_A 90 MDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS--SHSLYIY 129 (288)
T ss_dssp SCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 378998887655445 56677877877776653 5787765
No 290
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=33.00 E-value=72 Score=18.37 Aligned_cols=42 Identities=12% Similarity=0.015 Sum_probs=28.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcC-CCCeEEEEeeCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHAD-SNIVIMMIGNKT 53 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~lvgnK~ 53 (78)
++|++.+ +.....+...+++..+.+++... +++|+++-|.-.
T Consensus 139 ~~d~v~l--S~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~ 181 (210)
T 1y80_A 139 QPDIVGM--SALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPL 181 (210)
T ss_dssp CCSEEEE--ECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTC
T ss_pred CCCEEEE--eccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCC
Confidence 4455444 45556678888888888877642 468877777654
No 291
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=32.45 E-value=54 Score=20.13 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=27.2
Q ss_pred cCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 9 RGALGALLVYDVTKS-TTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
.|+|+++++--.-.+ .|-+.+..+++.+-+.. +.|+++-
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiilY 128 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV--SIPVFLY 128 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 378888887655455 56677877877776653 5787765
No 292
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=32.45 E-value=43 Score=16.86 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=7.2
Q ss_pred EEEEEECCC
Q 038356 14 ALLVYDVTK 22 (78)
Q Consensus 14 ~ilv~d~~~ 22 (78)
++++||+++
T Consensus 3 vlv~YDI~~ 11 (85)
T 2i0x_A 3 IVVVYDVGV 11 (85)
T ss_dssp EEEEEECCS
T ss_pred EEEEeeCCh
Confidence 678888877
No 293
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=32.11 E-value=84 Score=20.44 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=29.9
Q ss_pred cCCcEEEEEEECCChh---hHHH-------HHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTKST---TFEN-------VSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~---s~~~-------~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
++||.+|++-...+.. ..+- ++...+.+.++..++..+++++|=.|.
T Consensus 107 ~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~ 163 (375)
T 7mdh_A 107 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163 (375)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhH
Confidence 7999999986655421 2221 234445556654578889999997664
No 294
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=31.81 E-value=56 Score=20.23 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=26.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
|+|+++++--.-.+.|-+.+..+++.+-+.. +.|+++-
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 132 (297)
T 2rfg_A 95 GADAVLCVAGYYNRPSQEGLYQHFKMVHDAI--DIPIIVY 132 (297)
T ss_dssp TCSEEEECCCTTTCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 7888888765555556677877777776553 5787765
No 295
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=31.63 E-value=61 Score=21.45 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=15.5
Q ss_pred CCCeEEEEeeCCCCCCCCCc
Q 038356 42 SNIVIMMIGNKTDLKHLPTS 61 (78)
Q Consensus 42 ~~~~~~lvgnK~Dl~~~~~v 61 (78)
.++|+++|.||+|.-...++
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHH
T ss_pred hCCCEEEEEcchhccchHHH
Confidence 67899999999997544333
No 296
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=31.59 E-value=62 Score=17.79 Aligned_cols=28 Identities=0% Similarity=-0.143 Sum_probs=18.6
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHH
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDL 36 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~ 36 (78)
..+|++|+++-+=.-.--..++.|++.+
T Consensus 70 ~~aD~ii~~~P~y~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 70 LQCHILIFATPIYWFGMSGTLKLFIDRW 97 (184)
T ss_dssp HTCSEEEEEEECBTTBCCHHHHHHHHTH
T ss_pred HhCCEEEEEeCccccCCcHHHHHHHHHh
Confidence 6899999988766544333446666655
No 297
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=31.53 E-value=55 Score=20.70 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=26.9
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
|+|+++++--.-.+.|-+.+..+++.+-+.. ++|+++-
T Consensus 129 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiilY 166 (332)
T 2r8w_A 129 GADALLLAPVSYTPLTQEEAYHHFAAVAGAT--ALPLAIY 166 (332)
T ss_dssp TCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 7888888765545556677877877776653 5787765
No 298
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=31.52 E-value=85 Score=19.79 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=31.8
Q ss_pred chhcCCcEEEEEEECCC------hhhHH----HHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 6 YYNRGALGALLVYDVTK------STTFE----NVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 6 y~~~~a~~~ilv~d~~~------~~s~~----~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
-+ ++||.+|+...... .+.+. -++...+.+.+.+ ++..+++++|=.|.
T Consensus 72 a~-~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~ 129 (324)
T 3gvi_A 72 AI-EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDA 129 (324)
T ss_dssp GG-TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred HH-CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHH
Confidence 35 79999999754432 22232 2355666677776 78888999987664
No 299
>3hxl_A Uncharacterized protein DSY3957; alpha-beta three-domained protein., structural genomics, PSI protein structure initiative; 1.90A {Desulfitobacterium hafniense}
Probab=31.46 E-value=98 Score=20.61 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=27.0
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCC
Q 038356 15 LLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKT 53 (78)
Q Consensus 15 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~ 53 (78)
+++++.++......+..|++.+++.. ......++|+..
T Consensus 202 ~i~~p~~d~~~~~~l~a~ikr~r~~~-g~~~~aV~g~~~ 239 (446)
T 3hxl_A 202 TIALPSTDDALKATFTAFAKRLRDDE-GKKIQVVLENYP 239 (446)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHT-CCCCEEEEESCG
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEcCCC
Confidence 45667788888888899999887733 444556677643
No 300
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=31.36 E-value=60 Score=16.93 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=9.1
Q ss_pred EEEEEEECCCh
Q 038356 13 GALLVYDVTKS 23 (78)
Q Consensus 13 ~~ilv~d~~~~ 23 (78)
-++++||+++.
T Consensus 9 ~vlV~YDI~~~ 19 (103)
T 3oq2_A 9 LVLISYDVSFE 19 (103)
T ss_dssp EEEEEEECCTT
T ss_pred EEEEEEECCCC
Confidence 57889999875
No 301
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.28 E-value=73 Score=18.75 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=20.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
++.||+|++- ....+ ..++.+.+ .++|+|+++...+
T Consensus 65 ~~vdgiIi~~-~~~~~------~~~~~l~~---~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 65 GSADGVIISK-IEPND------PRVRFMTE---RNMPFVTHGRSDM 100 (288)
T ss_dssp TCCSEEEEES-CCTTC------HHHHHHHH---TTCCEEEESCCCS
T ss_pred CCccEEEEec-CCCCc------HHHHHHhh---CCCCEEEECCcCC
Confidence 5789988753 22111 11222322 4689999887654
No 302
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=31.24 E-value=57 Score=20.42 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=27.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG 50 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg 50 (78)
.|+|+++++--.-.+.|-+.+..++..+-+.. ++|+++-=
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn 144 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL--DAPSIIYF 144 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS--SSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEe
Confidence 37899888765544556677877887776654 48877653
No 303
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=30.85 E-value=62 Score=16.93 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=8.6
Q ss_pred EEEEEEECCCh
Q 038356 13 GALLVYDVTKS 23 (78)
Q Consensus 13 ~~ilv~d~~~~ 23 (78)
-++++||+++.
T Consensus 6 ~vlv~YDI~~~ 16 (100)
T 4es1_A 6 LVLITYDVQTS 16 (100)
T ss_dssp EEEEEEECCTT
T ss_pred EEEEEEECCCC
Confidence 47889999874
No 304
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=30.85 E-value=78 Score=18.10 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=23.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhh---cCCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDH---ADSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~~lvgnK 52 (78)
+.||++|++.-.=+..--..++.|++.+... .-.+.|+.++++-
T Consensus 71 ~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s 117 (193)
T 3svl_A 71 RQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSS 117 (193)
T ss_dssp HHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEEC
T ss_pred HHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeC
Confidence 5788888876554433222234444444331 1145677777763
No 305
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=30.68 E-value=56 Score=20.14 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=27.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
|+|+++++--.-.+.+-+.+..+++.+-+.. +.|+++-
T Consensus 99 Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY 136 (293)
T 1f6k_A 99 GYDCLSAVTPFYYKFSFPEIKHYYDTIIAET--GSNMIVY 136 (293)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CCCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 8899988866555556777877777776553 4687765
No 306
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=30.60 E-value=93 Score=19.17 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=29.3
Q ss_pred cCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTK----------STTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+++|.+|+...... ++...-.+...+.+.+.+ ++..++++.|=+|+
T Consensus 71 ~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~ 126 (317)
T 2ewd_A 71 SGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDV 126 (317)
T ss_dssp TTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHH
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHH
Confidence 78898888763332 233344466777777776 57777777774443
No 307
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=30.57 E-value=50 Score=20.68 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=30.9
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLK 56 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~ 56 (78)
|+|+++++--.-.+.|-+.+..++..+-+.. ++|+++-=+..++.
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~g~~l~ 150 (316)
T 3e96_A 106 GADAVMIHMPIHPYVTAGGVYAYFRDIIEAL--DFPSLVYFKDPEIS 150 (316)
T ss_dssp TCSEEEECCCCCSCCCHHHHHHHHHHHHHHH--TSCEEEEECCTTSC
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCCC
Confidence 7899988754445557778878888886654 48887764444543
No 308
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=30.56 E-value=70 Score=18.76 Aligned_cols=43 Identities=5% Similarity=0.037 Sum_probs=25.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhh----cCCCCeEEEEee
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDH----ADSNIVIMMIGN 51 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~lvgn 51 (78)
..||++|+..-+=.-.--..++.|++.+... .-.+.|++++++
T Consensus 78 ~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t 124 (242)
T 1sqs_A 78 LESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDV 124 (242)
T ss_dssp HHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEE
T ss_pred HHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEe
Confidence 5789999987665544334456677665321 113456666554
No 309
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=30.56 E-value=15 Score=19.87 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
.+..+|+.=|++..+.-..+..+.+ . .++|++.+++|.+|
T Consensus 36 kakLViiA~D~~~~~~~~~l~~lc~----~--~~VP~~~v~sk~eL 75 (121)
T 2lbw_A 36 EKGLVVIAGDIWPADVISHIPVLCE----D--HSVPYIFIPSKQDL 75 (121)
T ss_dssp CCCEEEECTTCSCTTHHHHHHHHHH----H--TCCCEEECCCHHHH
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHH----h--cCCcEEEECCHHHH
Confidence 4555555556654433333333221 1 46888888887776
No 310
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=30.29 E-value=74 Score=19.59 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=27.5
Q ss_pred hhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKS----------TTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+|+....... ....-++...+.+.+.+ ++..++++.|=.|.
T Consensus 65 ~-~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 65 L-ADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDL 121 (304)
T ss_dssp G-TTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHH
T ss_pred h-CCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHH
Confidence 5 789999887644332 23333456666777665 67777777775553
No 311
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=30.27 E-value=80 Score=18.02 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=32.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~~ 57 (78)
..+|.++++... +..+...+....+.+++. ...+..+|.|+.+-..
T Consensus 132 ~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 132 LSGEEALLVTNP-EISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRSD 177 (237)
T ss_dssp TTCSEEEEEECS-CHHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred HHCCeEEEEecC-CcccHHHHHHHHHHHHhC--CCceEEEEEecCCccc
Confidence 678888888754 566777777777776654 2245568889998643
No 312
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.23 E-value=59 Score=16.47 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=21.7
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 12 LGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 12 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
|.+|+-+++.+.+.++- .+.+++...+.+|++++....|
T Consensus 54 dlvi~D~~l~~~~g~~~----~~~l~~~~~~~~~ii~~s~~~~ 92 (136)
T 3hdv_A 54 GLMITDLRMQPESGLDL----IRTIRASERAALSIIVVSGDTD 92 (136)
T ss_dssp EEEEECSCCSSSCHHHH----HHHHHTSTTTTCEEEEEESSCC
T ss_pred cEEEEeccCCCCCHHHH----HHHHHhcCCCCCCEEEEeCCCC
Confidence 44444444445555543 3444443236789988887665
No 313
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=30.15 E-value=85 Score=18.30 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=31.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl~ 56 (78)
..+|.+|++.. .+..+...+....+.+.+. ...++.+|.|+.+-.
T Consensus 131 ~~ad~vi~v~~-~~~~~~~~~~~~~~~l~~~--~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 131 AAAQELLLVVN-PEISSITDGLKTKIVAERL--GTKVLGVVVNRITTL 175 (263)
T ss_dssp HHSSEEEEEEC-SSHHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTT
T ss_pred HHCCEEEEEeC-CChhHHHHHHHHHHHHHhc--CCCeeEEEEccCCcc
Confidence 56788888875 4566777777777776654 224556889999864
No 314
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.96 E-value=59 Score=19.29 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=20.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
++.||+|++-...+.+ ..+.+.+ .++|+|+++...+-
T Consensus 67 ~~vdGiI~~~~~~~~~-------~~~~l~~---~~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 67 RMVDAFILLYSKENDP-------IKQMLID---ESMPFIVIGKPTSD 103 (295)
T ss_dssp TCCSEEEESCCCTTCH-------HHHHHHH---TTCCEEEESCCCSS
T ss_pred CCcCEEEEcCcccChH-------HHHHHHh---CCCCEEEECCCCcc
Confidence 5788888763221111 1222222 46899999876653
No 315
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=29.73 E-value=72 Score=17.62 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=26.1
Q ss_pred cCCcEEEEEEECCChhhH-----HHHHHHH-HHHhhhcCCCCeEEEEee
Q 038356 9 RGALGALLVYDVTKSTTF-----ENVSRWL-KDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~-----~~~~~~~-~~~~~~~~~~~~~~lvgn 51 (78)
...|.+++.+.+-....+ ..+..|+ +.+....-++.++.+.|+
T Consensus 44 ~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~~~l~gk~~avfg~ 92 (173)
T 2fcr_A 44 KDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGL 92 (173)
T ss_dssp GGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGGCCCTTCEEEEEEE
T ss_pred ccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccccccCCCEEEEEEE
Confidence 577899998887553222 2345566 555433234567777777
No 316
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=29.65 E-value=9.7 Score=19.09 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.3
Q ss_pred CCCeEEEEeeCCCC
Q 038356 42 SNIVIMMIGNKTDL 55 (78)
Q Consensus 42 ~~~~~~lvgnK~Dl 55 (78)
.++|++.+.+|.+|
T Consensus 52 ~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 52 QGISVSMVESMKKL 65 (82)
T ss_dssp HTCCEEEESCHHHH
T ss_pred cCCCEEEECCHHHH
Confidence 46899999888776
No 317
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=29.55 E-value=60 Score=16.34 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=21.5
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
.|.+++-+++.+.+.++-+ ..+++.. ++.|++++....|.
T Consensus 47 ~dlii~d~~l~~~~g~~~~----~~l~~~~-~~~~ii~~s~~~~~ 86 (134)
T 3f6c_A 47 PDIVIIDVDIPGVNGIQVL----ETLRKRQ-YSGIIIIVSAKNDH 86 (134)
T ss_dssp CSEEEEETTCSSSCHHHHH----HHHHHTT-CCSEEEEEECC---
T ss_pred CCEEEEecCCCCCChHHHH----HHHHhcC-CCCeEEEEeCCCCh
Confidence 4555555555555555443 3344443 67898888877664
No 318
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=29.54 E-value=65 Score=16.77 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=23.6
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 12 LGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 12 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
|.+++-+++.+.+.++-++. +++.. +.+|++++....|
T Consensus 50 dlvi~D~~l~~~~g~~~~~~----l~~~~-~~~~ii~~s~~~~ 87 (151)
T 3kcn_A 50 SVIMVDMRMPGMEGTEVIQK----ARLIS-PNSVYLMLTGNQD 87 (151)
T ss_dssp SEEEEESCCSSSCHHHHHHH----HHHHC-SSCEEEEEECGGG
T ss_pred CEEEEeCCCCCCcHHHHHHH----HHhcC-CCcEEEEEECCCC
Confidence 66776666666666654433 33333 6789888876554
No 319
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=29.40 E-value=46 Score=18.03 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=23.7
Q ss_pred CChhhHHHHHHHHHHHhhhcCCCCeEEEE-eeCCCCC
Q 038356 21 TKSTTFENVSRWLKDLGDHADSNIVIMMI-GNKTDLK 56 (78)
Q Consensus 21 ~~~~s~~~~~~~~~~~~~~~~~~~~~~lv-gnK~Dl~ 56 (78)
-.+.||+.-..-...++...+..+|+++- ..++|++
T Consensus 8 K~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P 44 (118)
T 3rui_B 8 KSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIP 44 (118)
T ss_dssp TTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSC
T ss_pred hccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCC
Confidence 34567877766667777766677888764 3455553
No 320
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=29.38 E-value=66 Score=16.79 Aligned_cols=39 Identities=5% Similarity=0.018 Sum_probs=22.7
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+++-+++.+.+.++-++ .+++.. +.+|++++....|
T Consensus 48 ~dliild~~l~~~~g~~~~~----~l~~~~-~~~pii~ls~~~~ 86 (155)
T 1qkk_A 48 AGIVISDIRMPGMDGLALFR----KILALD-PDLPMILVTGHGD 86 (155)
T ss_dssp CSEEEEESCCSSSCHHHHHH----HHHHHC-TTSCEEEEECGGG
T ss_pred CCEEEEeCCCCCCCHHHHHH----HHHhhC-CCCCEEEEECCCC
Confidence 46666655555555554333 333333 6789988877654
No 321
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=29.32 E-value=77 Score=17.53 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=31.2
Q ss_pred cCCcEEEEEEECCChhhHHHH-HHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 9 RGALGALLVYDVTKSTTFENV-SRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.++-...++|.-+|.+.|+.. +..+.+.+... ..+...+-||...
T Consensus 80 sgsgvm~i~f~gddlea~ekalkemirqarkfa-gtvtytl~gn~l~ 125 (170)
T 4hhu_A 80 SGSGVMVIVFEGDDLEALEKALKEMIRQARKFA-GTVTYTLSGNRLV 125 (170)
T ss_dssp TTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTT-CEEEEEECSSEEE
T ss_pred CCceEEEEEEecCcHHHHHHHHHHHHHHHHhhc-ceEEEEEeCCEEE
Confidence 356677789999999999987 66777776665 4444555555443
No 322
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=29.32 E-value=68 Score=20.48 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCCh-hhHHHHHHHHHHHhh-hcCCCCeEEEEe
Q 038356 10 GALGALLVYDVTKS-TTFENVSRWLKDLGD-HADSNIVIMMIG 50 (78)
Q Consensus 10 ~a~~~ilv~d~~~~-~s~~~~~~~~~~~~~-~~~~~~~~~lvg 50 (78)
|+|+++++--.-.+ .+-+.+..++..+-+ . .++|+++-=
T Consensus 118 Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa--~~lPiilYn 158 (344)
T 2hmc_A 118 GAKGLMVIPRVLSRGSVIAAQKAHFKAILSAA--PEIPAVIYN 158 (344)
T ss_dssp TCSEEEECCCCSSSTTCHHHHHHHHHHHHHHS--TTSCEEEEE
T ss_pred CCCEEEECCCccCCCCCHHHHHHHHHHHHhhC--CCCcEEEEe
Confidence 78998887655555 566778778777765 3 358877654
No 323
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=29.27 E-value=64 Score=20.21 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=30.8
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
.|+|+++++--.-.+.+-+.+..+++.+-+.. ++|+++-= +..++.
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l~ 167 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI--GVPVMLYNNPGTSGIDMS 167 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEEEECHHHHSCCCC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCcchhCcCCC
Confidence 37899888755444456677877888886654 47887764 355553
No 324
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=29.02 E-value=67 Score=16.71 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=15.7
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+++-+++.+.+.++-+ ..+++.. +.+|++++....+
T Consensus 51 ~dlvi~d~~l~~~~g~~~~----~~l~~~~-~~~~ii~ls~~~~ 89 (154)
T 2qsj_A 51 VDLILLDVNLPDAEAIDGL----VRLKRFD-PSNAVALISGETD 89 (154)
T ss_dssp CSEEEECC------CHHHH----HHHHHHC-TTSEEEEC-----
T ss_pred CCEEEEeCCCCCCchHHHH----HHHHHhC-CCCeEEEEeCCCC
Confidence 4555555544444444433 3344433 6789888876554
No 325
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=28.95 E-value=94 Score=19.26 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=29.1
Q ss_pred hhcCCcEEEEEEECCChh----------hHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 7 YNRGALGALLVYDVTKST----------TFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
+ ++||.+|+...+.... +..-.+...+.+.+.+ ++..+++++|=+|
T Consensus 72 l-~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~ 127 (316)
T 1ldn_A 72 C-RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVD 127 (316)
T ss_dssp T-TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHH
T ss_pred h-CCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchH
Confidence 5 7999999885544322 1122355666677776 6777788888554
No 326
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=28.63 E-value=65 Score=18.31 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=26.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhh----------cCCCCeEEEEeeCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDH----------ADSNIVIMMIGNKTD 54 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~----------~~~~~~~~lvgnK~D 54 (78)
..||++|++.-+=+-.--..++.|++.+... .-.+.|++++++--.
T Consensus 66 ~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg 121 (192)
T 3fvw_A 66 QEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANG 121 (192)
T ss_dssp HHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCC
T ss_pred HhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCC
Confidence 6789999976544433223346677776531 114567777766443
No 327
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=28.62 E-value=47 Score=21.28 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=25.2
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHhhhcCCCCeEEEE-eeCCCC
Q 038356 10 GALGALLVYDVTKS---TTFENVSRWLKDLGDHADSNIVIMMI-GNKTDL 55 (78)
Q Consensus 10 ~a~~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~lv-gnK~Dl 55 (78)
+.|.+|+.=|+.+. .+++.+..++..+.. .+.|++.+ || -|.
T Consensus 92 ~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~---~~~~~~~v~GN-HD~ 137 (443)
T 2xmo_A 92 KTDVLIISGDLTNNGEKTSHEELAKKLTQVEK---NGTQVFVVPGN-HDI 137 (443)
T ss_dssp TCSEEEEESCCBSSCCHHHHHHHHHHHHHHHH---TTCEEEEECCT-TTS
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEECCc-CCC
Confidence 56888888888764 344554455554432 35777666 77 443
No 328
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=28.50 E-value=91 Score=19.71 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=30.4
Q ss_pred cCCcEEEEEEECCC------hhhHH----HHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTK------STTFE----NVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~------~~s~~----~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+++|.+++.-...+ .+-++ -++...+.+.+.+++.+.+++++|=.|.
T Consensus 78 ~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~ 134 (333)
T 5mdh_A 78 KDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT 134 (333)
T ss_dssp TTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHH
Confidence 79999998765432 22222 2356677777776445568899987664
No 329
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=28.36 E-value=72 Score=17.83 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=25.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDH----ADSNIVIMMIGNKT 53 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~lvgnK~ 53 (78)
..+|++|+..-+=.-.--..++.|++.+... .-.+.|+.++++--
T Consensus 69 ~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g 117 (199)
T 2zki_A 69 RWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEAS 117 (199)
T ss_dssp HHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBS
T ss_pred HhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCC
Confidence 5789999987665533333456666655221 12456776666543
No 330
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=28.32 E-value=39 Score=20.76 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=24.7
Q ss_pred CCcEEEEEEECCChh-hHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKST-TFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
|+|+++++--.-.+. |-+.+..+++.+-+ +.|+++-
T Consensus 88 Gadavlv~~P~y~~~~~~~~l~~~f~~va~----~lPiilY 124 (283)
T 2pcq_A 88 GAMALLATPPRYYHGSLGAGLLRYYEALAE----KMPLFLY 124 (283)
T ss_dssp TCSEEEECCCCTTGGGTTTHHHHHHHHHHH----HSCEEEE
T ss_pred CCCEEEecCCcCCCCCCHHHHHHHHHHHhc----CCCEEEE
Confidence 788888876555555 66677677777655 5787765
No 331
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=28.13 E-value=69 Score=16.64 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=23.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
..|.+++-+++.+.+.++-++ .+++.. +.+|++++....|
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~----~l~~~~-~~~~ii~~s~~~~ 100 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAA----AVRSYE-LPTRVLLISAHDE 100 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHH----HHHHTT-CSCEEEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhcC-CCCeEEEEEccCC
Confidence 345665555555555554433 344443 6789888877655
No 332
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=28.06 E-value=85 Score=20.14 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=24.8
Q ss_pred ECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 19 DVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 19 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
-+....+...++..+.++.....++.+++++|.|.+.
T Consensus 108 ~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g 144 (381)
T 3dmg_A 108 ALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKG 144 (381)
T ss_dssp ECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred ECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHH
Confidence 3443344445566666776666678899999988763
No 333
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=27.81 E-value=64 Score=16.33 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=22.3
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+|+-+++.+.+.++-+ ..+++.. +.+|++++....+
T Consensus 52 ~dlvi~d~~l~~~~g~~~~----~~l~~~~-~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 52 PDVIITDIRMPKLGGLEML----DRIKAGG-AKPYVIVISAFSE 90 (137)
T ss_dssp CSEEEECSSCSSSCHHHHH----HHHHHTT-CCCEEEECCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHH----HHHHhcC-CCCcEEEEecCcC
Confidence 4555555555555555443 3344443 6788888776554
No 334
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=27.73 E-value=10 Score=21.01 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=21.8
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+..+|+.=|++..+.-..+..+.++ .++|++.+++|.+|
T Consensus 49 akLViiA~D~~p~~~~~~l~~lc~~------~~VP~~~v~sk~eL 87 (134)
T 2ale_A 49 SEFIIMAADCEPIEILLHLPLLCED------KNVPYVFVPSRVAL 87 (134)
T ss_dssp EEEEEEETTCSSGGGGTHHHHHHHH------HTCCEEEESCHHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHh------cCCCEEEECCHHHH
Confidence 4445555566554444444433222 35788888887776
No 335
>3sf4_D Protein inscuteable homolog; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=27.66 E-value=52 Score=15.07 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 27 ENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
++++.|.+.++....-.+-.++-+.-+-.
T Consensus 9 DSVqrWmeDLr~MTe~ECMcvLQ~Kpi~~ 37 (52)
T 3sf4_D 9 DSVQRWMEDLKLMTECECMCVLQAKPISL 37 (52)
T ss_dssp HHHHHHHHHHTTCCCCCCSEEEECCCCCC
T ss_pred HHHHHHHHHHHhhhhceEEEEeecCccCc
Confidence 56789999998776555555655544444
No 336
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=27.64 E-value=55 Score=17.59 Aligned_cols=33 Identities=3% Similarity=0.061 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCeEEEE-eeCCCC
Q 038356 23 STTFENVSRWLKDLGDHADSNIVIMMI-GNKTDL 55 (78)
Q Consensus 23 ~~s~~~~~~~~~~~~~~~~~~~~~~lv-gnK~Dl 55 (78)
+.||+.-..-...++...+..+|+++= ..+.|+
T Consensus 8 ~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~ 41 (117)
T 1eo6_A 8 DHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQI 41 (117)
T ss_dssp HSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSS
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCC
Confidence 346776666666776666678898876 334444
No 337
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=27.61 E-value=71 Score=20.08 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=29.2
Q ss_pred hhcCCcEEEEEEECCChhh------H----HHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKSTT------F----ENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~s------~----~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+|+......... + .-++...+.+.+++ ++..++++.|=.|.
T Consensus 74 ~-~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 130 (326)
T 2zqz_A 74 A-KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDI 130 (326)
T ss_dssp G-GGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHH
T ss_pred h-CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcHHH
Confidence 5 79999998776554321 1 22355666666675 77777888886664
No 338
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=27.22 E-value=75 Score=16.73 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=22.6
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+|+-+++.+.+.++-++ .+++.. +.+|++++....|
T Consensus 84 ~dliilD~~l~~~~g~~~~~----~lr~~~-~~~~ii~ls~~~~ 122 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLS----NIMEFD-KNARVIMISALGK 122 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHH----HHHHHC-TTCCEEEEESCCC
T ss_pred CCEEEEeccCCCccHHHHHH----HHHhhC-CCCcEEEEeccCc
Confidence 35566555555555555433 344443 6788888877554
No 339
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=26.92 E-value=80 Score=19.72 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=28.6
Q ss_pred hhcCCcEEEEEEECCChhh----------HHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKSTT----------FENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+|+......... ..-++...+.+.+.+ ++..++++.|=.|.
T Consensus 70 ~-~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 126 (318)
T 1ez4_A 70 C-KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDI 126 (318)
T ss_dssp G-TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred h-CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCcHHH
Confidence 5 79999998765543321 122355666666665 77777788876664
No 340
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=26.76 E-value=1.1e+02 Score=19.04 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=29.8
Q ss_pred hhcCCcEEEEEEECCC------hhh----HHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTK------STT----FENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~------~~s----~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+|+...+.. .+. ..-.++..+.+.+.+ ++..++++.|=+|.
T Consensus 80 l-~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~ 136 (328)
T 2hjr_A 80 L-QNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDA 136 (328)
T ss_dssp G-TTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred H-CCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHH
Confidence 5 78999988764332 222 222456677777776 67777778885553
No 341
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=26.72 E-value=30 Score=18.47 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=17.5
Q ss_pred ccccchhcCCcEEEEEEECC--ChhhH
Q 038356 2 INSAYYNRGALGALLVYDVT--KSTTF 26 (78)
Q Consensus 2 l~~~y~~~~a~~~ilv~d~~--~~~s~ 26 (78)
|++... ..||++|+.-|+. +.+.|
T Consensus 50 Lt~~~I-~~AD~VIia~d~~v~~~~RF 75 (106)
T 2m1z_A 50 LTEKDV-NIGEVVIFAVDTKVRNKERF 75 (106)
T ss_dssp CCHHHH-HHCSEEEEEESSCCSTHHHH
T ss_pred CCHHHH-hhCCEEEEeccccccchhcc
Confidence 345567 7899999999975 45555
No 342
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=26.72 E-value=57 Score=17.99 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCeEEEE-eeCCC
Q 038356 23 STTFENVSRWLKDLGDHADSNIVIMMI-GNKTD 54 (78)
Q Consensus 23 ~~s~~~~~~~~~~~~~~~~~~~~~~lv-gnK~D 54 (78)
+.||+.-..-...+++.-+..+|+++- ..+.+
T Consensus 15 ~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~ 47 (130)
T 2zjd_A 15 RRTFEQRVEDVRLIREQHPTKIPVIIERYKGEK 47 (130)
T ss_dssp HSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCC
T ss_pred hCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCC
Confidence 346766666666777666678898873 45555
No 343
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=26.59 E-value=1e+02 Score=19.21 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=27.2
Q ss_pred hhcCCcEEEEEEECCChh------h----HHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKST------T----FENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~------s----~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+|+........ . ..-++...+.+.+.+ ++.-++++.|=.|.
T Consensus 72 ~-~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~ 128 (318)
T 1y6j_A 72 V-KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDI 128 (318)
T ss_dssp G-TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHH
T ss_pred h-CCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCcHHH
Confidence 5 7999999876554321 1 111355666666665 67777777775543
No 344
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=26.59 E-value=69 Score=19.03 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=20.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
++.||+|++-.-.+.+ .++.+.+ .++|+|++++..+.
T Consensus 82 ~~vdgiIi~~~~~~~~-------~~~~l~~---~~iPvV~i~~~~~~ 118 (305)
T 3huu_A 82 KSVDGFILLYSLKDDP-------IEHLLNE---FKVPYLIVGKSLNY 118 (305)
T ss_dssp TCCSEEEESSCBTTCH-------HHHHHHH---TTCCEEEESCCCSS
T ss_pred CCCCEEEEeCCcCCcH-------HHHHHHH---cCCCEEEECCCCcc
Confidence 5788888753211111 1222222 46899999987743
No 345
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=26.17 E-value=41 Score=21.13 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=23.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcC---CCCeEEEEee
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHAD---SNIVIMMIGN 51 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~lvgn 51 (78)
..+|+++++...-.-.-...++.+++.+..... .+.|+.++++
T Consensus 306 ~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~~~ 351 (404)
T 2ohh_A 306 LESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGS 351 (404)
T ss_dssp HTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEEEE
T ss_pred HHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEEEe
Confidence 578899887554332212234455554443222 4567777766
No 346
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=26.15 E-value=32 Score=19.32 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=16.4
Q ss_pred EEEEECCChhhHHHHHHHH
Q 038356 15 LLVYDVTKSTTFENVSRWL 33 (78)
Q Consensus 15 ilv~d~~~~~s~~~~~~~~ 33 (78)
+.+-|+++...++.++.|-
T Consensus 100 ~~iPDLtd~~nvk~Lr~W~ 118 (144)
T 2kkm_A 100 FLCPDLSDAKNMEFLRNWN 118 (144)
T ss_dssp EEEECSCCHHHHHHHHTCS
T ss_pred ccCCCCCCHHHHHHHHHcC
Confidence 4678999999999999883
No 347
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=26.01 E-value=1.1e+02 Score=18.37 Aligned_cols=45 Identities=7% Similarity=0.064 Sum_probs=27.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEE-EEeeCCCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIM-MIGNKTDLKH 57 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-lvgnK~Dl~~ 57 (78)
+.+|++++|.... ..+...+....+.+++. +.+++ +|.|+.|...
T Consensus 213 ~~aD~vilVv~~~-~~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 213 KFTGNVVYVVNSE-NNNKDEVKKGKELIEAT---GAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHCEEEEEEETT-SCCHHHHHHHHHHHHTT---TCEEEEEEEEEECC--
T ss_pred HHCCEEEEEEeCC-CCcHHHHHHHHHHHHhC---CCCEEEEEEeCCcCCC
Confidence 4578888888653 34555555555555532 35554 8899998653
No 348
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=25.81 E-value=52 Score=18.37 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=23.9
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhh----cCCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDH----ADSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~lvgnK 52 (78)
..+|++|+..-+-.-.--..++.|++.+... .-.+.|+.++++-
T Consensus 67 ~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~ 114 (198)
T 3b6i_A 67 ADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSST 114 (198)
T ss_dssp GGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEE
T ss_pred HHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeC
Confidence 6889999877554433223345555544321 1144566666554
No 349
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=25.80 E-value=63 Score=17.10 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCeEEEEee
Q 038356 23 STTFENVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 23 ~~s~~~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
+.||+.-..-...++...+..+|+++-..
T Consensus 7 ~~~~e~R~~e~~~ir~k~p~~IPVive~~ 35 (110)
T 2r2q_A 7 DHPFEYRKKEGEKIRKKYPDRVPVIVEKA 35 (110)
T ss_dssp HSCHHHHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhCCCceEEEEEec
Confidence 34666666666667666667788877654
No 350
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold, glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A {Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X* 1tml_A* 3ru8_X 3rpt_X
Probab=25.78 E-value=79 Score=19.92 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=23.0
Q ss_pred cEEEEEEECCChh----------hHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 12 LGALLVYDVTKST----------TFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 12 ~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
-.++.+|++.+++ +.+.=+.|++.+.... .+.|+++|
T Consensus 67 ~pvlVvY~lP~RDCa~aS~Gg~~~~~~Yk~~Id~ia~~i-~~~~~vvI 113 (286)
T 2bog_X 67 IPILVVSNAPGRDCGNHSSGGAPSHSAYRSWIDEFAAGL-KNRPAYII 113 (286)
T ss_dssp BCEEEECCCSCSCCC------CSSHHHHHHHHHHHHHTT-TTCCCEEE
T ss_pred ceEEEEeCCCCCCcccccCCCCCCHHHHHHHHHHHHHHh-CCCceEEE
Confidence 3467888887765 3444467888886665 33454443
No 351
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.43 E-value=68 Score=18.78 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=20.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
++.||+|++-.-.+.+ .++.+.+ .++|++++++..+-
T Consensus 68 ~~vdgiIi~~~~~~~~-------~~~~l~~---~~iPvV~~~~~~~~ 104 (292)
T 3k4h_A 68 RQIGGIILLYSRENDR-------IIQYLHE---QNFPFVLIGKPYDR 104 (292)
T ss_dssp TCCCEEEESCCBTTCH-------HHHHHHH---TTCCEEEESCCSSC
T ss_pred CCCCEEEEeCCCCChH-------HHHHHHH---CCCCEEEECCCCCC
Confidence 4778888753221111 2222222 46899999887653
No 352
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=25.29 E-value=75 Score=16.05 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=21.4
Q ss_pred CcEEEEEEECC-ChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVT-KSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+++-++.. +.+.++-++. +++. +.+|++++....+
T Consensus 55 ~dlii~d~~~~~~~~g~~~~~~----l~~~--~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 55 PDIALVDIMLCGALDGVETAAR----LAAG--CNLPIIFITSSQD 93 (140)
T ss_dssp CSEEEEESSCCSSSCHHHHHHH----HHHH--SCCCEEEEECCCC
T ss_pred CCEEEEecCCCCCCCHHHHHHH----HHhC--CCCCEEEEecCCC
Confidence 46666655554 4455544333 3333 5688888877654
No 353
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.16 E-value=80 Score=16.37 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=22.3
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+++-+++.+.+.++-+ ..+++.. +++|++++....|
T Consensus 67 ~dlii~D~~l~~~~g~~~~----~~l~~~~-~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVL----EWIRSEK-LETKVVVVTTFKR 105 (150)
T ss_dssp CSEEEECSSCSSSCHHHHH----HHHHHTT-CSCEEEEEESCCC
T ss_pred CCEEEEeCCCCCCcHHHHH----HHHHHhC-CCCeEEEEeCCCC
Confidence 4555554455555555433 3344433 6789988877655
No 354
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.06 E-value=79 Score=16.23 Aligned_cols=40 Identities=3% Similarity=0.081 Sum_probs=24.2
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
..|.+|+-+++.+.+.++-++. +++.. +.+|++++....|
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~----l~~~~-~~~~ii~lt~~~~ 106 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEK----LSRLH-PGLTCLLVTTDAS 106 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHH----HHHHC-TTCEEEEEESCCC
T ss_pred CCCEEEEeCCCCCccHHHHHHH----HHHhC-CCCcEEEEeCCCC
Confidence 3466666666666665554433 34333 6789888877654
No 355
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=25.03 E-value=74 Score=15.90 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=22.1
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+++-+.+.+.+.++-+ +.+++.. +..|++++....+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~----~~l~~~~-~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVI----RHLAEHK-SPASLILISGYDS 85 (135)
T ss_dssp TEEEEEECCTTTTHHHHHH----HHHHHTT-CCCEEEEEESSCH
T ss_pred CCEEEEeCCCCCCCHHHHH----HHHHhCC-CCCCEEEEEeccc
Confidence 3555555555555555443 3344443 6789888876554
No 356
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=24.98 E-value=66 Score=17.44 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCeEEEE-eeCCCCC
Q 038356 23 STTFENVSRWLKDLGDHADSNIVIMMI-GNKTDLK 56 (78)
Q Consensus 23 ~~s~~~~~~~~~~~~~~~~~~~~~~lv-gnK~Dl~ 56 (78)
+.||+.-..-...++...+..+|+++- ..|.|++
T Consensus 11 ~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P 45 (119)
T 3h9d_A 11 SHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIG 45 (119)
T ss_dssp HSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCC
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCC
Confidence 346666655566666666677887764 3445543
No 357
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=24.73 E-value=1.3e+02 Score=18.92 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=20.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
++.||+|+ ...+.+ ..+.+. ..++|+|+++...+
T Consensus 75 ~~vDGiIi--~~~~~~-------~~~~l~---~~~iPvV~i~~~~~ 108 (412)
T 4fe7_A 75 WLGDGVIA--DFDDKQ-------IEQALA---DVDVPIVGVGGSYH 108 (412)
T ss_dssp CCCSEEEE--ETTCHH-------HHHHHT---TCCSCEEEEEECCS
T ss_pred CCCCEEEE--ecCChH-------HHHHHh---hCCCCEEEecCCcc
Confidence 57899987 332221 222222 35799999998765
No 358
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=24.70 E-value=1.1e+02 Score=19.06 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=29.8
Q ss_pred CC-cEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe----eCCCCC
Q 038356 10 GA-LGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG----NKTDLK 56 (78)
Q Consensus 10 ~a-~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg----nK~Dl~ 56 (78)
|+ |+++++--.-.+.+-+.+..|++.+-+.. ++|+++-= +..++.
T Consensus 102 Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l~ 151 (311)
T 3h5d_A 102 GGFAAGLAIVPYYNKPSQEGMYQHFKAIADAS--DLPIIIYNIPGRVVVELT 151 (311)
T ss_dssp CCCSEEEEECCCSSCCCHHHHHHHHHHHHHSC--SSCEEEEECHHHHSSCCC
T ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEecccccCCCCC
Confidence 55 88888765544556677777887776653 68888763 355553
No 359
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.54 E-value=1.1e+02 Score=18.34 Aligned_cols=41 Identities=12% Similarity=-0.052 Sum_probs=25.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKT 53 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~ 53 (78)
+++++.+ +.....+...++...+.+++.. .++|+++-|.-.
T Consensus 174 ~~d~V~l--S~l~~~~~~~~~~~i~~l~~~~-~~~~v~vGG~~~ 214 (258)
T 2i2x_B 174 KPIMLTG--TALMTTTMYAFKEVNDMLLENG-IKIPFACGGGAV 214 (258)
T ss_dssp CCSEEEE--ECCCTTTTTHHHHHHHHHHTTT-CCCCEEEESTTC
T ss_pred CCCEEEE--EeeccCCHHHHHHHHHHHHhcC-CCCcEEEECccC
Confidence 4454444 4444556667778888887764 458877776544
No 360
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=24.53 E-value=97 Score=17.12 Aligned_cols=43 Identities=9% Similarity=-0.044 Sum_probs=23.8
Q ss_pred cCCcEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEee
Q 038356 9 RGALGALLVYDVTKSTTF-ENVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
...|.+++.+.+-..... ..+..+++.+....-.+.++.++|+
T Consensus 44 ~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~l~gk~vavfg~ 87 (175)
T 1ag9_A 44 EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGC 87 (175)
T ss_dssp HTCSEEEEECCEETTTEECHHHHHHHHHHTTCCCTTCEEEEEEE
T ss_pred hhCCEEEEEEeecCCCcChHHHHHHHhhhhhcccCCCEEEEEEE
Confidence 567888887655221111 2244455555432235577888877
No 361
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=24.53 E-value=1.2e+02 Score=19.35 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=30.9
Q ss_pred hhcCCcEEEEEEECCCh------hh-HHH---HHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKS------TT-FEN---VSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~------~s-~~~---~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+|+.-..... +- ..+ ++...+.+.+++ ++.-+++++|=.|.
T Consensus 87 ~-~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi 143 (330)
T 3ldh_A 87 S-AGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTD 143 (330)
T ss_dssp C-SSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH
T ss_pred h-CCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHH
Confidence 5 789999887544321 22 222 356667777775 78888999987764
No 362
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=24.50 E-value=93 Score=16.88 Aligned_cols=44 Identities=7% Similarity=0.035 Sum_probs=25.0
Q ss_pred cCCcEEEEEEECCChhhH-HHHHHHHHHHhhhcCCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTF-ENVSRWLKDLGDHADSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~lvgnK 52 (78)
..+|.+++++.+-..... ..+..+++.+....-.+.++.++|+-
T Consensus 45 ~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~tg 89 (169)
T 1obo_A 45 NDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFGTG 89 (169)
T ss_dssp GGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEEEC
T ss_pred hhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEEEC
Confidence 577899998776432111 22344554444322256788888873
No 363
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=24.46 E-value=34 Score=18.24 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=23.0
Q ss_pred cC-CcEEEEEEECCChhh--HH-HHHHHHHHHhhhcCCCCeEEEEee
Q 038356 9 RG-ALGALLVYDVTKSTT--FE-NVSRWLKDLGDHADSNIVIMMIGN 51 (78)
Q Consensus 9 ~~-a~~~ilv~d~~~~~s--~~-~~~~~~~~~~~~~~~~~~~~lvgn 51 (78)
.. +|+++++..+-.... +. .++.+++.+....-.+.++.++|+
T Consensus 46 ~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v~~~ 92 (147)
T 1f4p_A 46 FEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGC 92 (147)
T ss_dssp TTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEEEEE
T ss_pred cCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEEEee
Confidence 56 888888765542211 11 234455544332224567777777
No 364
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=24.45 E-value=81 Score=16.16 Aligned_cols=41 Identities=7% Similarity=0.164 Sum_probs=24.0
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhh-cCCCCeEEEEeeCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDH-ADSNIVIMMIGNKTD 54 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~lvgnK~D 54 (78)
..|.+|+-++..+.+.++- ...+++. ..+.+|++++....+
T Consensus 52 ~~dlii~d~~l~~~~g~~~----~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 52 HPHLIITEANMPKISGMDL----FNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp CCSEEEEESCCSSSCHHHH----HHHHHTSTTTTTSCEEEEESSCC
T ss_pred CCCEEEEcCCCCCCCHHHH----HHHHHcCcccCCCCEEEEeCCCC
Confidence 3466666555555555543 3344442 236789998887655
No 365
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=24.24 E-value=91 Score=18.42 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=20.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
++.||+|++-.-.+.+ .++.+.+ .++|+|+++...+
T Consensus 64 ~~vdGiIi~~~~~~~~-------~~~~l~~---~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDF-------RLQYLQK---QNFPFLALGRSHL 99 (294)
T ss_dssp TCCSEEEECSCCSSCH-------HHHHHHH---TTCCEEEESCCCC
T ss_pred CCCCEEEEeCCCCChH-------HHHHHHh---CCCCEEEECCCCC
Confidence 4788888754322221 1222222 4689999988654
No 366
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=24.14 E-value=1.5e+02 Score=19.45 Aligned_cols=41 Identities=20% Similarity=0.059 Sum_probs=24.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCC-e-EEEEeeCCCCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNI-V-IMMIGNKTDLKH 57 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~-~-~~lvgnK~Dl~~ 57 (78)
.+|.+++|.|.+... + .......+. ... | ..+|.||.|...
T Consensus 210 ~~d~vllVvda~~g~--~-~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQ--Q-AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CCSEEEEEEEGGGGG--G-HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred cCcceeEEeeccccH--H-HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 678899998875432 1 111122222 234 5 789999999853
No 367
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=23.69 E-value=82 Score=15.94 Aligned_cols=40 Identities=3% Similarity=-0.065 Sum_probs=25.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
..|.+++-+++.+.+.++-+ ..+++.. +++|++++....+
T Consensus 59 ~~dlvi~D~~l~~~~g~~~~----~~l~~~~-~~~~ii~~s~~~~ 98 (135)
T 3snk_A 59 RPGIVILDLGGGDLLGKPGI----VEARALW-ATVPLIAVSDELT 98 (135)
T ss_dssp CCSEEEEEEETTGGGGSTTH----HHHHGGG-TTCCEEEEESCCC
T ss_pred CCCEEEEeCCCCCchHHHHH----HHHHhhC-CCCcEEEEeCCCC
Confidence 45777777777776665543 3344444 5789888876554
No 368
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=23.55 E-value=72 Score=17.49 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCeEEEEe-eCCCCC
Q 038356 23 STTFENVSRWLKDLGDHADSNIVIMMIG-NKTDLK 56 (78)
Q Consensus 23 ~~s~~~~~~~~~~~~~~~~~~~~~~lvg-nK~Dl~ 56 (78)
..||+.-+.-...++..-+..+|+++-- .|.|++
T Consensus 16 ~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP 50 (125)
T 3m95_A 16 EHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLG 50 (125)
T ss_dssp HSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSC
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCc
Confidence 3467666666666766666778887643 345543
No 369
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.47 E-value=1.2e+02 Score=17.65 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=20.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
++.||+|+.-... ...++.+. ..++|+++++...+-
T Consensus 62 ~~vdgiIi~~~~~--------~~~~~~l~---~~~iPvV~i~~~~~~ 97 (276)
T 3jy6_A 62 RGFDGLILQSFSN--------PQTVQEIL---HQQMPVVSVDREMDA 97 (276)
T ss_dssp TTCSEEEEESSCC--------HHHHHHHH---TTSSCEEEESCCCTT
T ss_pred CCCCEEEEecCCc--------HHHHHHHH---HCCCCEEEEecccCC
Confidence 4677877653222 11222332 257899999876653
No 370
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=23.35 E-value=85 Score=17.44 Aligned_cols=29 Identities=0% Similarity=-0.013 Sum_probs=19.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLG 37 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~ 37 (78)
..||++|+++-+=.-.-=..++.|++.+.
T Consensus 85 ~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 113 (201)
T 1t5b_A 85 KAHDVIVIAAPMYNFNIPTQLKNYFDLIA 113 (201)
T ss_dssp HHCSEEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred HhCCEEEEEeCcccCcCCHHHHHHHHHhe
Confidence 58899999876554432234577888775
No 371
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=23.30 E-value=1.1e+02 Score=17.34 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=25.3
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEe
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIG 50 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvg 50 (78)
+.||++|.++|.+.+++-...+--+... .+.|++++-
T Consensus 80 ~~aD~vVA~ldg~~~D~GTa~EiGyA~a-----lgKPVv~l~ 116 (167)
T 1s2d_A 80 SNATCGVFLYDMDQLDDGSAFXIGFMRA-----MHKPVILVP 116 (167)
T ss_dssp HHCSEEEEEEESSSCCHHHHHHHHHHHH-----TTCCEEEEE
T ss_pred HhCCEEEEECCCCCCCCCceeehhhHhh-----CCCeEEEEE
Confidence 6899999999988887766543332222 457877773
No 372
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=22.93 E-value=14 Score=19.16 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=14.9
Q ss_pred CCChhhHHHHHHHHHHHhh
Q 038356 20 VTKSTTFENVSRWLKDLGD 38 (78)
Q Consensus 20 ~~~~~s~~~~~~~~~~~~~ 38 (78)
.++...++.+..|++.++-
T Consensus 12 ~~d~~~~~~V~~WL~sLrL 30 (88)
T 2d3d_A 12 LTDPKLLKNIPMWLKSLRL 30 (88)
T ss_dssp HTCHHHHTCHHHHHHHTTC
T ss_pred ccCccccccHHHHHHHccc
Confidence 4677888899999987643
No 373
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=22.89 E-value=1.3e+02 Score=18.64 Aligned_cols=45 Identities=7% Similarity=0.158 Sum_probs=28.1
Q ss_pred cCCcEEEEEEECCC---------hhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 9 RGALGALLVYDVTK---------STTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 9 ~~a~~~ilv~d~~~---------~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
++||.+|+..-... .+...-.++..+.+.+.+ ++..++++.|=+|
T Consensus 76 ~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~ 129 (303)
T 2i6t_A 76 AHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVE 129 (303)
T ss_dssp TTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHH
T ss_pred CCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHH
Confidence 78998888753321 112222356677777776 7777788888555
No 374
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.57 E-value=76 Score=19.11 Aligned_cols=44 Identities=5% Similarity=-0.083 Sum_probs=24.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhh-----cCCCCeEEEEeeC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDH-----ADSNIVIMMIGNK 52 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~-----~~~~~~~~lvgnK 52 (78)
..||++|++.-.=+-.--..++.|++.+... .-.+.|+.++++-
T Consensus 97 ~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 97 IWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp HHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 5788888877655543333345555555321 1145677776663
No 375
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=22.48 E-value=1.5e+02 Score=18.43 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=26.6
Q ss_pred cCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 9 RGALGALLVYDVTKS--TTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
.|+|+++++--.-.+ .|-+.+..+++.+-+.. ++|+++-
T Consensus 108 ~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~--~lPiilY 148 (307)
T 3s5o_A 108 VGADAAMVVTPCYYRGRMSSAALIHHYTKVADLS--PIPVVLY 148 (307)
T ss_dssp TTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhc--CCCEEEE
Confidence 378999988654443 36677777777776553 5787765
No 376
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=22.29 E-value=1.3e+02 Score=18.94 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=30.2
Q ss_pred hhcCCcEEEEEEECCChh---hHH----H---HHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKST---TFE----N---VSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~---s~~----~---~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+|+........ ..+ + ++...+.+.+.+ ++.-+++++|=.|.
T Consensus 71 ~-~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvvtNPvd~ 127 (326)
T 3pqe_A 71 C-KDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASG-FDGIFLVATNPVDI 127 (326)
T ss_dssp G-TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred h-CCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcCChHHH
Confidence 5 7999999986543321 111 1 245556666665 67888898887764
No 377
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.18 E-value=86 Score=15.64 Aligned_cols=39 Identities=3% Similarity=0.107 Sum_probs=19.2
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+++-+++.+.+.++-+ ..+++.. +.+|++++....+
T Consensus 52 ~dlvi~d~~l~~~~g~~~~----~~l~~~~-~~~~ii~~t~~~~ 90 (130)
T 3eod_A 52 PDLMICDIAMPRMNGLKLL----EHIRNRG-DQTPVLVISATEN 90 (130)
T ss_dssp CSEEEECCC-----CHHHH----HHHHHTT-CCCCEEEEECCCC
T ss_pred CCEEEEecCCCCCCHHHHH----HHHHhcC-CCCCEEEEEcCCC
Confidence 4555554444444444433 3344433 6788888877654
No 378
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=22.12 E-value=71 Score=16.95 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.5
Q ss_pred CCCeEEEE-eeCCCCC
Q 038356 42 SNIVIMMI-GNKTDLK 56 (78)
Q Consensus 42 ~~~~~~lv-gnK~Dl~ 56 (78)
.++|++.+ ++|.+|.
T Consensus 67 ~~ipv~~~~~s~~eLG 82 (112)
T 3iz5_f 67 AKISVHHFHGNNVDLG 82 (112)
T ss_dssp TTCCEECCCCTTCTHH
T ss_pred cCCcEEEeCCCHHHHH
Confidence 56999988 9999884
No 379
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=22.08 E-value=1.3e+02 Score=18.68 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=30.8
Q ss_pred hhcCCcEEEEEEECCChh------hHHH----HHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKST------TFEN----VSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~------s~~~----~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+++.-.+.+.. -|+. ++...+.+.+++ ++..+++|.|=+|.
T Consensus 67 ~-~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd~ 123 (294)
T 2x0j_A 67 L-KGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDV 123 (294)
T ss_dssp G-TTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHH
T ss_pred h-CCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcchh
Confidence 5 7999999987655532 2221 245566666665 67778899887763
No 380
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=21.96 E-value=66 Score=19.35 Aligned_cols=40 Identities=8% Similarity=0.260 Sum_probs=24.1
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHhhhcCCCCeEE-EEee
Q 038356 10 GALGALLVYDVTKS---TTFENVSRWLKDLGDHADSNIVIM-MIGN 51 (78)
Q Consensus 10 ~a~~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~-lvgn 51 (78)
++|.+++.=|+.+. +.++.+..+++.+.+.. ++|++ +.||
T Consensus 66 ~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~--~~pv~~v~GN 109 (330)
T 3ib7_A 66 RPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQL--GAELVWVMGN 109 (330)
T ss_dssp CCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHH--TCEEEECCCT
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhc--CCCEEEeCCC
Confidence 67888888888774 44555556665553321 35554 4455
No 381
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.95 E-value=91 Score=15.82 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=20.4
Q ss_pred EEEEEEECCChh----hHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 13 GALLVYDVTKST----TFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 13 ~~ilv~d~~~~~----s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.-+++.|+.-++ .++ ....+++.. +++|++++....|
T Consensus 51 ~dlvi~D~~l~~~~~~g~~----~~~~l~~~~-~~~~ii~~s~~~~ 91 (136)
T 3kto_A 51 AIGMIIEAHLEDKKDSGIE----LLETLVKRG-FHLPTIVMASSSD 91 (136)
T ss_dssp EEEEEEETTGGGBTTHHHH----HHHHHHHTT-CCCCEEEEESSCC
T ss_pred CCEEEEeCcCCCCCccHHH----HHHHHHhCC-CCCCEEEEEcCCC
Confidence 344555655433 333 333444443 7789888876654
No 382
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=21.88 E-value=1.9e+02 Score=20.38 Aligned_cols=43 Identities=14% Similarity=0.402 Sum_probs=24.6
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|++|+=+++.+.+.-.+-..+++++++.. .++|++++..+.+
T Consensus 54 ~d~vilDi~lp~~~~~~~G~~ll~~iR~~~-~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 54 IDCLMFSYQMEHPDEHQNVRQLIGKLHERQ-QNVPVFLLGDREK 96 (755)
T ss_dssp CSEEEEECCCCSHHHHHHHHHHHHHHHHHS-TTCCEEEEECHHH
T ss_pred CcEEEEeCCCCcccccccHHHHHHHHHHhC-CCCCEEEEecCCc
Confidence 567766555544111111124556666553 6799999988754
No 383
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=21.66 E-value=22 Score=18.72 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=20.5
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE-eeCCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI-GNKTDL 55 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv-gnK~Dl 55 (78)
+..+|+.=|. .++.-..+..+..+ .++|++.+ ++|.+|
T Consensus 38 a~lViiA~D~-~~~~~~~l~~~c~~------~~Vp~~~~~~sk~eL 76 (110)
T 3cpq_A 38 GKLVVLAGNI-PKDLEEDVKYYAKL------SNIPVYQHKITSLEL 76 (110)
T ss_dssp CSEEEECTTC-BHHHHHHHHHHHHH------TTCCEEECCSCHHHH
T ss_pred ceEEEEeCCC-CHHHHHHHHHHHHH------cCCCEEEEcCCHHHH
Confidence 4455555555 44444333333221 46887776 888776
No 384
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=21.53 E-value=42 Score=21.13 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=10.0
Q ss_pred CCCeEEEEeeCC
Q 038356 42 SNIVIMMIGNKT 53 (78)
Q Consensus 42 ~~~~~~lvgnK~ 53 (78)
.++|++.|||=.
T Consensus 34 ~~vPVI~VGNit 45 (315)
T 4ehx_A 34 LPVPVISVGNLS 45 (315)
T ss_dssp CSSCEEEEEESB
T ss_pred CCCCEEEECCEE
Confidence 579999999954
No 385
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=21.48 E-value=33 Score=17.71 Aligned_cols=14 Identities=7% Similarity=0.104 Sum_probs=11.9
Q ss_pred CCCeEEEEeeCCCC
Q 038356 42 SNIVIMMIGNKTDL 55 (78)
Q Consensus 42 ~~~~~~lvgnK~Dl 55 (78)
.++|++.+++|.+|
T Consensus 60 ~~vp~~~~~s~~eL 73 (101)
T 3v7q_A 60 YKVPYKKVESRAVL 73 (101)
T ss_dssp TTCCEEEESCHHHH
T ss_pred cCCCeeeechHHHH
Confidence 57899999998887
No 386
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=21.37 E-value=99 Score=16.05 Aligned_cols=40 Identities=5% Similarity=0.035 Sum_probs=24.0
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
..|.+|+-+++.+.+.++-++. +++.. +++|++++....+
T Consensus 58 ~~dlvi~D~~l~~~~g~~~~~~----l~~~~-~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 58 EVDLVISAAHLPQMDGPTLLAR----IHQQY-PSTTRILLTGDPD 97 (153)
T ss_dssp CCSEEEEESCCSSSCHHHHHHH----HHHHC-TTSEEEEECCCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHH----HHhHC-CCCeEEEEECCCC
Confidence 3466666666666666654443 33333 6789888876554
No 387
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP: c.56.5.1
Probab=21.23 E-value=1e+02 Score=18.96 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=16.8
Q ss_pred ECCChhhHHHHHHHHHHHhhhc
Q 038356 19 DVTKSTTFENVSRWLKDLGDHA 40 (78)
Q Consensus 19 d~~~~~s~~~~~~~~~~~~~~~ 40 (78)
|-+...+++.+..|++.+....
T Consensus 2 ~~~~y~~~~ei~~~l~~l~~~~ 23 (312)
T 2c1c_A 2 PYDNYQELEVIDEYLDYIGEKY 23 (312)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
Confidence 4556678899999999886654
No 388
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.93 E-value=57 Score=20.08 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 10 GALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 10 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
|+|+++++--.-.+.|-+.+..+++.+-+. .+.|+++-
T Consensus 96 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a--~~lPiilY 133 (291)
T 3a5f_A 96 GVDGLLVITPYYNKTTQKGLVKHFKAVSDA--VSTPIIIY 133 (291)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHC-CTGGG--CCSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Confidence 788888876554445666666666665543 35787765
No 389
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.92 E-value=1e+02 Score=15.97 Aligned_cols=39 Identities=5% Similarity=0.059 Sum_probs=21.4
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCC
Q 038356 11 ALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTD 54 (78)
Q Consensus 11 a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~D 54 (78)
.|.+++-++..+.+.++-+ ..+++.. +.+|++++....|
T Consensus 52 ~dlii~D~~l~~~~g~~~~----~~l~~~~-~~~~ii~ls~~~~ 90 (153)
T 3cz5_A 52 PDIVVMDLTLPGPGGIEAT----RHIRQWD-GAARILIFTMHQG 90 (153)
T ss_dssp CSEEEECSCCSSSCHHHHH----HHHHHHC-TTCCEEEEESCCS
T ss_pred CCEEEEecCCCCCCHHHHH----HHHHHhC-CCCeEEEEECCCC
Confidence 4555554444444544433 3344433 6788888876654
No 390
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.89 E-value=88 Score=19.49 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=24.6
Q ss_pred cCCcEEEEEEECC---ChhhHHHHHHHHHHHhhhcCCCCeEEEE
Q 038356 9 RGALGALLVYDVT---KSTTFENVSRWLKDLGDHADSNIVIMMI 49 (78)
Q Consensus 9 ~~a~~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~lv 49 (78)
.|+|+++++--.- .+.|-+.+..+++.+-+.. ++|+++-
T Consensus 102 ~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~--~lPiilY 143 (309)
T 3fkr_A 102 LGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAI--AIPIMVQ 143 (309)
T ss_dssp TTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 3788888874332 2345667777777776553 5777765
No 391
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=20.88 E-value=1.3e+02 Score=17.14 Aligned_cols=28 Identities=4% Similarity=0.096 Sum_probs=20.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHH
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDL 36 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~ 36 (78)
..||++|+..-+=+-.-=-.++.|++.+
T Consensus 86 ~~AD~iV~~~P~y~~~~pa~lK~~iD~~ 113 (212)
T 3r6w_A 86 FDSDLLVISTPMYNFSVPSGLKAWIDQI 113 (212)
T ss_dssp HHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HhCCEEEEEcCcccccCCHHHHHHHHHH
Confidence 6799999988765544334457788887
No 392
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=20.61 E-value=62 Score=20.10 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=26.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 9 RGALGALLVYDVTKSTTFENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 9 ~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+.|..+|+.-|++-.+-.. ++..+-+. .++|.+.|.+|.+|
T Consensus 139 gKAqLVVIA~DvdPielv~----~LPaLCee--~~VPY~~V~sK~~L 179 (255)
T 4a17_F 139 KQAKLVVIAHDVDPIELVI----FLPQLCRK--NDVPFAFVKGKAAL 179 (255)
T ss_dssp SCCSEEEEESCCSSTHHHH----HHHHHHHH--TTCCEEEESCHHHH
T ss_pred CCceEEEEeCCCChHHHHH----HHHHHHHH--cCCCEEEECCHHHH
Confidence 3567788888886554333 23233222 56899999988887
No 393
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=20.25 E-value=1.5e+02 Score=18.39 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=29.5
Q ss_pred hhcCCcEEEEEEECCChh------h----HHHHHHHHHHHhhhcCCCCeEEEEeeCCCC
Q 038356 7 YNRGALGALLVYDVTKST------T----FENVSRWLKDLGDHADSNIVIMMIGNKTDL 55 (78)
Q Consensus 7 ~~~~a~~~ilv~d~~~~~------s----~~~~~~~~~~~~~~~~~~~~~~lvgnK~Dl 55 (78)
+ ++||.+|+........ . ..-++...+.+.+.+ ++..++++.|=.|.
T Consensus 65 ~-~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 121 (310)
T 2xxj_A 65 L-EGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVATNPVDV 121 (310)
T ss_dssp G-TTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH
T ss_pred h-CCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEecCchHH
Confidence 5 7899888876555431 1 222355666666675 77777777775554
No 394
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.11 E-value=97 Score=19.02 Aligned_cols=13 Identities=0% Similarity=0.110 Sum_probs=9.6
Q ss_pred CCCeEEEEeeCCC
Q 038356 42 SNIVIMMIGNKTD 54 (78)
Q Consensus 42 ~~~~~~lvgnK~D 54 (78)
.++|+|+++...+
T Consensus 150 ~~iPvV~i~~~~~ 162 (366)
T 3h5t_A 150 RGLPAVIADQPAR 162 (366)
T ss_dssp HTCCEEEESSCCS
T ss_pred CCCCEEEECCccC
Confidence 3589999987654
Done!