BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038357
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRY--YGRNEDLNLLEFAYELRKNGEGTEFFDPSL 59
G S K DV+ YGV+ L++I+G+R ++D+ LL++ L K + D L
Sbjct: 210 GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDL 269
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
+ ++ + +Q+ALLC Q + +RP + E++ ML +
Sbjct: 270 QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRY--YGRNEDLNLLEFAYELRKNGEGTEFFDPSL 59
G S K DV+ YGV+ L++I+G+R ++D+ LL++ L K + D L
Sbjct: 218 GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDL 277
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
+ ++ + +Q+ALLC Q + +RP + E++ ML +
Sbjct: 278 QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 317
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLD 60
KG + K DVYS+GV+ +++ + E +NL E+A E NG+ + DP+L
Sbjct: 215 KGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLA 274
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTML 96
D L + A+ C+ ++ DRP++ ++L L
Sbjct: 275 DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLD 60
KG + K DVYS+GV+ +++ + E +NL E+A E NG+ + DP+L
Sbjct: 215 KGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLA 274
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTML 96
D L + A+ C+ ++ DRP++ ++L L
Sbjct: 275 DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL 310
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLD 60
+G + K D+YS+GV+ L+II+G + R L L + ++ D ++
Sbjct: 208 RGEITPKSDIYSFGVVLLEIITGLPAVDEH-REPQLLLDIKEEIEDEEKTIEDYIDKKMN 266
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETAN 102
D+ S + +A C+ E RP + ++ +L TA+
Sbjct: 267 DADST-SVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 307
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLD 60
+G + K D+YS+GV+ L+II+G + R L L + ++ D ++
Sbjct: 202 RGEITPKSDIYSFGVVLLEIITGLPAVDEH-REPQLLLDIKEEIEDEEKTIEDYIDKKMN 260
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETAN 102
D+ S + +A C+ E RP + ++ +L TA+
Sbjct: 261 DADST-SVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 301
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLD 60
+G + K D+YS+GV+ L+II+G + R L L + ++ D ++
Sbjct: 208 RGEITPKSDIYSFGVVLLEIITGLPAVDEH-REPQLLLDIKEEIEDEEKTIEDYIDKKMN 266
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETAN 102
D+ S + +A C+ E RP + ++ +L TA+
Sbjct: 267 DADST-SVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 307
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLD 60
+G + K D+YS+GV+ L+II+G + R L L + ++ D +
Sbjct: 199 RGEITPKSDIYSFGVVLLEIITGLPAVDEH-REPQLLLDIKEEIEDEEKTIEDYIDKKXN 257
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETAN 102
D+ S + +A C+ E RP + ++ +L TA+
Sbjct: 258 DADST-SVEAXYSVASQCLHEKKNKRPDIKKVQQLLQEXTAS 298
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
IYS K DV+SYGVL +I S S Y G D + F LR EG P
Sbjct: 277 IYSTKSDVWSYGVLLWEIFS-LGGSPYPGVQMDED---FCSRLR---EGMRMRAPE---- 325
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ QI L C + +RP E++ L +
Sbjct: 326 ---YSTPEIYQIMLDCWHRDPKERPRFAELVEKLGD 358
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 29/100 (29%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDSS 63
YS K DV+S+GVL ++ S + YE R N E E D S
Sbjct: 179 YSSKSDVWSFGVLMWEVFSEGK---------------IPYENRSNSEVVE-------DIS 216
Query: 64 SAWKLMR-------CMQIALLCVQENAADRPAVLEILTML 96
+ ++L + QI C +E DRPA +L L
Sbjct: 217 TGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQL 256
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 29/100 (29%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDSS 63
YS K DV+S+GVL ++ S + YE R N E E D S
Sbjct: 181 YSSKSDVWSFGVLMWEVFSEGK---------------IPYENRSNSEVVE-------DIS 218
Query: 64 SAWKLMR-------CMQIALLCVQENAADRPAVLEILTML 96
+ ++L + QI C +E DRPA +L L
Sbjct: 219 TGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQL 258
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 29/100 (29%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDSS 63
YS K DV+S+GVL ++ S + YE R N E E D S
Sbjct: 201 YSSKSDVWSFGVLMWEVFSEGK---------------IPYENRSNSEVVE-------DIS 238
Query: 64 SAWKLMR-------CMQIALLCVQENAADRPAVLEILTML 96
+ ++L + QI C +E DRPA +L L
Sbjct: 239 TGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQL 278
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 29/100 (29%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDSS 63
YS K DV+S+GVL ++ S + YE R N E E D S
Sbjct: 181 YSSKSDVWSFGVLMWEVFSEGK---------------IPYENRSNSEVVE-------DIS 218
Query: 64 SAWKLMR-------CMQIALLCVQENAADRPAVLEILTML 96
+ ++L + QI C +E DRPA +L L
Sbjct: 219 TGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQL 258
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 29/100 (29%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDSS 63
YS K DV+S+GVL ++ S + YE R N E E D S
Sbjct: 182 YSSKSDVWSFGVLMWEVFSEGK---------------IPYENRSNSEVVE-------DIS 219
Query: 64 SAWKLMR-------CMQIALLCVQENAADRPAVLEILTML 96
+ ++L + QI C +E DRPA +L L
Sbjct: 220 TGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQL 259
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 29/100 (29%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDSS 63
YS K DV+S+GVL ++ S + YE R N E E D S
Sbjct: 184 YSSKSDVWSFGVLMWEVFSEGK---------------IPYENRSNSEVVE-------DIS 221
Query: 64 SAWKLMR-------CMQIALLCVQENAADRPAVLEILTML 96
+ ++L + QI C +E DRPA +L L
Sbjct: 222 TGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQL 261
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNED-LNLLEFAYELRKNGEGTEFFDPSLDDS 62
++ DV+SYG++ +++S + N+D + +E Y L P +D
Sbjct: 211 FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRL----------PPPMDCP 260
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETAN 102
+ +LM L C Q+ +DRP +I+ ML+ N
Sbjct: 261 IALHQLM------LDCWQKERSDRPKFGQIVNMLDKLIRN 294
>pdb|4DKC|A Chain A, Crystal Structure Of Human Interleukin-34
pdb|4DKC|B Chain B, Crystal Structure Of Human Interleukin-34
pdb|4DKE|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
pdb|4DKE|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
pdb|4DKF|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Fab2
pdb|4DKF|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Fab2
Length = 190
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 51 GTEFFDPSLDDSSSAWKLMRCMQIALLCVQENAAD---RPAVLEILTMLNNETANIKVPR 107
TE L + +WK ++ ++ LL VQ+ D P V +L++LN N+K+ R
Sbjct: 84 ATESVQDVLLEGHPSWKYLQEVETLLLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVR 143
Query: 108 KPAF 111
A
Sbjct: 144 PKAL 147
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 23/108 (21%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNED-LNLLEFAYELRKNGEGTEFFDPSLDDS 62
++ DV+SYG++ +++S + N+D + +E Y L PS D
Sbjct: 204 FTSASDVWSYGIVMWEVVSYGERPYWEMTNQDVIKAVEEGYRL-----------PSPMDC 252
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETANIKVPRKPA 110
+A Q+ L C Q+ RP EI+ ML+ K+ R PA
Sbjct: 253 PAA-----LYQLMLDCWQKERNSRPKFDEIVNMLD------KLIRNPA 289
>pdb|4DKD|A Chain A, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
pdb|4DKD|B Chain B, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 185
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 51 GTEFFDPSLDDSSSAWKLMRCMQIALLCVQENAAD---RPAVLEILTMLNNETANIKVPR 107
TE L + +WK ++ ++ LL VQ+ D P V +L++LN N+K+ R
Sbjct: 84 ATESVQDVLLEGHPSWKYLQEVETLLLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVR 143
Query: 108 KPAF 111
A
Sbjct: 144 PKAL 147
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 1 KGIYSMKYDVYSYGVLPLQIIS 22
+GIY++K DV+SYG+L +I S
Sbjct: 248 EGIYTIKSDVWSYGILLWEIFS 269
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNED-LNLLEFAYELRKNGEGTEFFDPSLDDS 62
++ DV+SYG++ +++S + N+D + +E Y L P +D
Sbjct: 190 FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRL----------PPPMDCP 239
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETAN 102
+ +LM L C Q+ +DRP +I+ ML+ N
Sbjct: 240 IALHQLM------LDCWQKERSDRPKFGQIVNMLDKLIRN 273
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRNED-LNLLEFAYELRKNGEGTEFFDPSLDDS 62
++ DV+SYG++ +++S + N+D + +E Y L P +D
Sbjct: 196 FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRL----------PPPMDCP 245
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETAN 102
+ +LM L C Q+ +DRP +I+ ML+ N
Sbjct: 246 IALHQLM------LDCWQKERSDRPKFGQIVNMLDKLIRN 279
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNE 34
+G Y K DV+S GV+ ++SG T +YG+NE
Sbjct: 196 RGTYDEKCDVWSAGVILYILLSG--TPPFYGKNE 227
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNE 34
+G Y K DV+S GV+ ++SG T +YG+NE
Sbjct: 196 RGTYDEKCDVWSAGVILYILLSG--TPPFYGKNE 227
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 1 KGIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNE 34
+G Y K DV+S GV+ ++SG T +YG+NE
Sbjct: 196 RGTYDEKCDVWSAGVILYILLSG--TPPFYGKNE 227
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSLD 60
+Y+ DV+SYGVL +I+S T Y G E L Y L K L+
Sbjct: 207 VYTTNSDVWSYGVLLWEIVSLGGTP-YCGMTCAELYEKLPQGYRLEK----------PLN 255
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLN 97
+ LMR C +E +RP+ +IL LN
Sbjct: 256 CDDEVYDLMR------QCWREKPYERPSFAQILVSLN 286
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSLD 60
+Y+ DV+SYGVL +I+S T Y G E L Y L K L+
Sbjct: 217 VYTTNSDVWSYGVLLWEIVSLGGTP-YCGMTCAELYEKLPQGYRLEK----------PLN 265
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLN 97
+ LMR C +E +RP+ +IL LN
Sbjct: 266 CDDEVYDLMR------QCWREKPYERPSFAQILVSLN 296
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSLD 60
+Y+ DV+SYGVL +I+S T Y G E L Y L K L+
Sbjct: 214 VYTTNSDVWSYGVLLWEIVSLGGTP-YCGMTCAELYEKLPQGYRLEK----------PLN 262
Query: 61 DSSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLN 97
+ LMR C +E +RP+ +IL LN
Sbjct: 263 CDDEVYDLMR------QCWREKPYERPSFAQILVSLN 293
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 194 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 246
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 247 ----ELYQLMR------LCWKERPEDRPT 265
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 278 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 326
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 327 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 359
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 226 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 274
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 275 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 307
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 226 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 274
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 275 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 307
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 226 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 274
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 275 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 307
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 276 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 324
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 325 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 357
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 187 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 239
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 240 ----ELYQLMR------LCWKERPEDRPT 258
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 228 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 276
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 277 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 309
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 191 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 243
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 244 ----ELYQLMR------LCWKERPEDRPT 262
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 226 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 274
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 275 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 307
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 217 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 265
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 266 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 298
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 217 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 265
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 266 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 298
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 186 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 238
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 239 ----ELYQLMR------LCWKERPEDRPT 257
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 190 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 242
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 243 ----ELYQLMR------LCWKERPEDRPT 261
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 226 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 274
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 275 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 307
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 271 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 319
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 320 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 352
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 19/88 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 185 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 237
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRP 87
++LMR LC +E DRP
Sbjct: 238 ----ELYQLMR------LCWKERPEDRP 255
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 191 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 243
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 244 ----ELYQLMR------LCWKERPEDRPT 262
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 193 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 245
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 246 ----ELYQLMR------LCWKERPEDRPT 264
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 185 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 237
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 238 ----ELYQLMR------LCWKERPEDRPT 256
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 269 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 317
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 318 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 350
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 185 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 237
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 238 ----ELYQLMR------LCWKERPEDRPT 256
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 222 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFXRRLK---EGTRMRAPD---- 270
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 271 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 303
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 217 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 265
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 266 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 298
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 217 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 265
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 266 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 298
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 195 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 247
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 248 ----ELYQLMR------LCWKERPEDRPT 266
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 180 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 232
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 233 ----ELYQLMR------LCWKERPEDRPT 251
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 263 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 311
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 312 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 344
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 181 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 233
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 234 ----ELYQLMR------LCWKERPEDRPT 252
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSL 59
G +++K DV+S+G+L +I++ R Y G E + LE Y + + E
Sbjct: 185 GTFTIKSDVWSFGILLTEIVTHGRIP-YPGMTNPEVIQNLERGYRMVRPDNCPE------ 237
Query: 60 DDSSSAWKLMRCMQIALLCVQENAADRPA 88
++LMR LC +E DRP
Sbjct: 238 ----ELYQLMR------LCWKERPEDRPT 256
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 IYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDDS 62
+Y+++ DV+S+GVL +I S S Y G D EF L+ EGT P
Sbjct: 222 VYTIQSDVWSFGVLLWEIFS-LGASPYPGVKID---EEFCRRLK---EGTRMRAPD---- 270
Query: 63 SSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNN 98
+ Q L C + RP E++ L N
Sbjct: 271 ---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 303
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 194 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 242
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 243 PEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 194 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 242
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 243 PEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 190 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 238
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 239 PEKVYELMRA------CWQWNPSDRPSFAEI 263
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 193 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 241
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 242 PEKVYELMRA------CWQWNPSDRPSFAEI 266
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 194 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 242
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 243 PEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|2IUM|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUN|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|D Chain D, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|E Chain E, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|F Chain F, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
Length = 248
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 38 LLEFAYELRKNGEGTEFFDP 57
L+ + L++N GT FFDP
Sbjct: 207 LIYLGFTLKQNSSGTNFFDP 226
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 194 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 242
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 243 PEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 190 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 238
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 239 PEKVYELMRA------CWQWNPSDRPSFAEI 263
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 187 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDPSQVYELLEKDYRMERP-EGC--------- 235
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 236 PEKVYELMRA------CWQWNPSDRPSFAEI 260
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 191 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 239
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 240 PEKVYELMRA------CWQWNPSDRPSFAEI 264
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 194 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 242
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 243 PEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 189 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 237
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 238 PEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 189 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 237
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 238 PEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 189 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 237
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 238 PEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 187 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDPSQVYELLEKDYRMERP-EGC--------- 235
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 236 PEKVYELMRA------CWQWNPSDRPSFAEI 260
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 191 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 239
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 240 PEKVYELMRA------CWQWNPSDRPSFAEI 264
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYGRN--EDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G + + LLE Y + + EG
Sbjct: 187 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDPSQVYELLEKDYRMERP-EGC--------- 235
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 236 PEKVYELMRA------CWQWNPSDRPSFAEI 260
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 189 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 237
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 238 PEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 191 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 239
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 240 PEKVYELMRA------CWQWNPSDRPSFAEI 264
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 189 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 237
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 238 PEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 202 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 250
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 251 PEKVYELMRA------CWQWNPSDRPSFAEI 275
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 189 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 237
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 238 PEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 435 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 483
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 484 PEKVYELMRA------CWQWNPSDRPSFAEI 508
>pdb|4I0P|C Chain C, Hla-do In Complex With Hla-dm
pdb|4I0P|G Chain G, Hla-do In Complex With Hla-dm
Length = 181
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 40 EFAYELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQENAADRPAV---LEILTML 96
+F +E + + F L S + W+L A Q A A+ L+IL
Sbjct: 21 QFTHEFDEE----QLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVER 76
Query: 97 NNETANIKVPRKPAFSVKSDEDECIPEVKICSVND 131
+N + I VP + KS + P + IC V++
Sbjct: 77 SNRSRAINVPPRVTVLPKSRVELGQPNILICIVDN 111
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 396 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 444
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 445 PEKVYELMRA------CWQWNPSDRPSFAEI 469
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + NE + LR EG D +
Sbjct: 215 GVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQV--------LRFVMEGG-LLDKPDNC 265
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 266 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 297
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + NE + LR EG D +
Sbjct: 215 GVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQV--------LRFVMEGG-LLDKPDNC 265
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 266 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 297
>pdb|1F3J|A Chain A, Histocompatibility Antigen I-Ag7
pdb|1F3J|D Chain D, Histocompatibility Antigen I-Ag7
Length = 182
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 50 EGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET-ANIKV 105
+G E F LD + W+L Q+ L Q +N A L ILT +N T A +
Sbjct: 28 DGDELFYVDLDKKKTVWRLPEFGQLILFEPQGGLQNIAAEKHNLGILTKRSNFTPATNEA 87
Query: 106 PRKPAFSVKSDEDECIPEVKICSVND 131
P+ F KS P IC V++
Sbjct: 88 PQATVFP-KSPVLLGQPNTLICFVDN 112
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 209 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 259
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 260 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 291
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 202 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 252
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 253 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 284
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 208 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 258
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 259 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 290
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ D++S+GV+ +I S Y G + + +L+F + + D +
Sbjct: 206 GVFTTSSDMWSFGVVLWEITSLAEQP-YQGLSNE-QVLKFVMD-------GGYLDQPDNC 256
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNETANIKVPRKPAFSVKSDEDECI 121
LMR +C Q N RP LEI+ +L ++ P P S E+
Sbjct: 257 PERVTDLMR------MCWQFNPKMRPTFLEIVNLLKDDLH----PSFPEVSFFHSEENKA 306
Query: 122 P 122
P
Sbjct: 307 P 307
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 4 YSMKYDVYSYGVLPLQIISGKRTSRYYG--RNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
+S+K DV+++GVL L I+ S Y G ++ LLE Y + + EG
Sbjct: 393 FSIKSDVWAFGVL-LWEIATYGMSPYPGIDLSQVYELLEKDYRMERP-EGC--------- 441
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEI 92
++LMR C Q N +DRP+ EI
Sbjct: 442 PEKVYELMRA------CWQWNPSDRPSFAEI 466
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 206 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 256
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 257 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 288
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 205 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 255
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 256 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 287
>pdb|4DKA|A Chain A, Structure Of Editosome Protein
pdb|4DKA|B Chain B, Structure Of Editosome Protein
Length = 127
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 10 VYSYGVLPLQIISGKRTSRYYG----RNEDLNLLEFAYELRKNGEGTEFFDP-------S 58
V + G L L + RTS Y R EF + +NG T + D S
Sbjct: 12 VQAGGSLRLSCAASGRTSSLYSMGWFRQAPGKEREFVAAISRNGANTYYTDSVKGRFTIS 71
Query: 59 LDDSSSAWKL-MRCMQIALLCVQENAADRPAVLEILTMLNNE 99
D++ + +L M ++ V AADR +E++T++ NE
Sbjct: 72 RDNAKNTVELQMNSLKPEDTAVYYCAADRFPTMEVVTIMTNE 113
>pdb|4DK3|A Chain A, Structure Of Editosome Protein
pdb|4DK3|B Chain B, Structure Of Editosome Protein
pdb|4DK6|A Chain A, Structure Of Editosome Protein
pdb|4DK6|B Chain B, Structure Of Editosome Protein
Length = 133
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 10 VYSYGVLPLQIISGKRTSRYYG----RNEDLNLLEFAYELRKNGEGTEFFDP-------S 58
V + G L L + RTS Y R EF + +NG T + D S
Sbjct: 12 VQAGGSLRLSCAASGRTSSLYSMGWFRQAPGKEREFVAAISRNGANTYYTDSVKGRFTIS 71
Query: 59 LDDSSSAWKL-MRCMQIALLCVQENAADRPAVLEILTMLNNE 99
D++ + +L M ++ V AADR +E++T++ NE
Sbjct: 72 RDNAKNTVELQMNSLKPEDTAVYYCAADRFPTMEVVTIMTNE 113
>pdb|1ES0|A Chain A, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
pdb|3CUP|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
pdb|3MBE|A Chain A, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|E Chain E, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 190
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 50 EGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET-ANIKV 105
+G E F LD + W+L Q+ L Q +N A L ILT +N T A +
Sbjct: 31 DGDELFYVDLDKKKTVWRLPEFGQLILFEPQGGLQNIAAEKHNLGILTKRSNFTPATNEA 90
Query: 106 PRKPAFSVKSDEDECIPEVKICSVND 131
P+ F KS P IC V++
Sbjct: 91 PQATVFP-KSPVLLGQPNTLICFVDN 115
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 208 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 258
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 259 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 290
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 209 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 259
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 260 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 291
>pdb|1A6A|A Chain A, The Structure Of An Intermediate In Class Ii Mhc
Maturation: Clip Bound To Hla-dr3
Length = 176
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 17 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 76
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 77 PITNVPPEVTVLTNSPVELREPNVLICFID 106
>pdb|1SEB|A Chain A, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|E Chain E, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|2SEB|A Chain A, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
pdb|1D5M|A Chain A, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1D5X|A Chain A, X-ray Crystal Structure Of Hla-dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D5Z|A Chain A, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D6E|A Chain A, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
pdb|1FV1|A Chain A, Structural Basis For The Binding Of An Immunodominant
Peptide From Myelin Basic Protein In Different Registers
By Two Hla-Dr2 Alleles
pdb|1FV1|D Chain D, Structural Basis For The Binding Of An Immunodominant
Peptide From Myelin Basic Protein In Different Registers
By Two Hla-Dr2 Alleles
pdb|1FYT|A Chain A, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
pdb|1HQR|A Chain A, Crystal Structure Of A Superantigen Bound To The High-
Affinity, Zinc-Dependent Site On Mhc Class Ii
pdb|1J8H|A Chain A, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
pdb|1ZGL|A Chain A, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|D Chain D, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|G Chain G, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|J Chain J, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|3C5J|A Chain A, Crystal Structure Of Hla Dr52c
Length = 181
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 21 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 80
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 81 PITNVPPEVTVLTNSPVELREPNVLICFID 110
>pdb|1KLU|A Chain A, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
Length = 179
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 18 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 77
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 78 PITNVPPEVTVLTNSPVELREPNVLICFID 107
>pdb|4H1L|A Chain A, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
pdb|4H1L|D Chain D, Tcr Interaction With Peptide Mimics Of Nickel Offers
Structural Insights In Nickel Contact Allergy
Length = 178
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 19 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 78
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 79 PITNVPPEVTVLTNSPVELREPNVLICFID 108
>pdb|1KLG|A Chain A, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
(Sec3-3b2)
Length = 177
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 18 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 77
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 78 PITNVPPEVTVLTNSPVELREPNVLICFID 107
>pdb|2IPK|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule Hla-Dr1 In
Complex With The Fluorogenic Peptide, Acpkxvkqntlklat
(X3-
[5-(Dimethylamino)-1,3-Dioxo-1,
3-Dihydro-2h-Isoindol-2-Yl]- L-Alanine) And The
Superantigen, Sec3 Variant 3b2
Length = 183
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 22 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 81
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 82 PITNVPPEVTVLTNSPVELREPNVLICFID 111
>pdb|1HXY|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin H In
Complex With Human Mhc Class Ii
pdb|1H15|A Chain A, X-Ray Crystal Structure Of Hla-Dra10101DRB50101 Complexed
With A Peptide From Epstein Barr Virus Dna Polymerase
pdb|1H15|D Chain D, X-Ray Crystal Structure Of Hla-Dra10101DRB50101 Complexed
With A Peptide From Epstein Barr Virus Dna Polymerase
pdb|1LO5|A Chain A, Crystal Structure Of The D227a Variant Of Staphylococcal
Enterotoxin A In Complex With Human Mhc Class Ii
pdb|1JWM|A Chain A, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1(Ha Peptide 306-318) With The
Superantigen Sec3
pdb|1JWS|A Chain A, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b1
pdb|1JWU|A Chain A, Crystal Structure Of The Complex Of The Mhc Class Ii
Molecule Hla-Dr1 (Ha Peptide 306-318) With The
Superantigen Sec3 Variant 3b2
pdb|1PYW|A Chain A, Human Class Ii Mhc Protein Hla-Dr1 Bound To A Designed
Peptide Related To Influenza Virus Hemagglutinin,
Fvkqna(Maa)al, In Complex With Staphylococcal
Enterotoxin C3 Variant 3b2 (Sec3-3b2)
pdb|2G9H|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
pdb|2IAM|A Chain A, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|A Chain A, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|F Chain F, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|K Chain K, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|P Chain P, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2Q6W|A Chain A, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
pdb|2Q6W|D Chain D, The Structure Of Hla-Dra, Drb30101 (Dr52a) With Bound
Platelet Integrin Peptide Associated With Fetal And
Neonatal Alloimmune Thrombocytopenia
pdb|2XN9|D Chain D, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|3O6F|A Chain A, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|E Chain E, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3QXA|A Chain A, Hla-Dr1 Bound With Clip Peptide
pdb|3QXA|D Chain D, Hla-Dr1 Bound With Clip Peptide
pdb|3T0E|A Chain A, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
pdb|4E41|A Chain A, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|F Chain F, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 182
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 21 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 80
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 81 PITNVPPEVTVLTNSPVELREPNVLICFID 110
>pdb|1DLH|A Chain A, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1DLH|D Chain D, Crystal Structure Of The Human Class Ii Mhc Protein
Hla-dr1 Complexed With An Influenza Virus Peptide
pdb|1KG0|A Chain A, Structure Of The Epstein-Barr Virus Gp42 Protein Bound To
The Mhc Class Ii Receptor Hla-Dr1
pdb|1SJE|A Chain A, Hla-Dr1 Complexed With A 16 Residue Hiv Capsid Peptide
Bound In A Hairpin Conformation
pdb|1SJH|A Chain A, Hla-Dr1 Complexed With A 13 Residue Hiv Capsid Peptide
Length = 180
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 19 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 78
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 79 PITNVPPEVTVLTNSPVELREPNVLICFID 108
>pdb|1T5X|A Chain A, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr) And The Superantigen Sec3-3b2
Length = 181
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 20 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 79
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 80 PITNVPPEVTVLTNSPVELREPNVLICFID 109
>pdb|1IAO|A Chain A, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
pdb|2IAD|A Chain A, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 194
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 50 EGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET-ANIKV 105
+G E F LD + W+L Q+ L Q +N A L ILT +N T A +
Sbjct: 31 DGDELFYVDLDKKKTVWRLPEFGQLILFEPQGGLQNIAAEKHNLGILTKRSNFTPATNEA 90
Query: 106 PRKPAFSVKSDEDECIPEVKICSVND 131
P+ F KS P IC V++
Sbjct: 91 PQATVFP-KSPVLLGQPNTLICFVDN 115
>pdb|3L6F|A Chain A, Structure Of Mhc Class Ii Molecule Hla-Dr1 Complexed With
Phosphopeptide Mart-1
pdb|3S4S|A Chain A, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|D Chain D, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|A Chain A, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|D Chain D, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 182
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 21 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 80
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 81 PITNVPPEVTVLTNSPVELREPNVLICFID 110
>pdb|1BX2|A Chain A, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
pdb|1BX2|D Chain D, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
pdb|1T5W|A Chain A, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
pdb|1T5W|D Chain D, Hla-Dr1 In Complex With A Synthetic Peptide
(Aaysdqatplllspr)
Length = 180
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 20 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 79
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 80 PITNVPPEVTVLTNSPVELREPNVLICFID 109
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 237 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 287
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
++LMR +C Q N RP+ LEI++ + E
Sbjct: 288 PDMLFELMR------MCWQYNPKMRPSFLEIISSIKEE 319
>pdb|1YMM|A Chain A, TcrHLA-Dr2bMBP-Peptide Complex
Length = 191
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 21 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 80
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 81 PITNVPPEVTVLTNSPVELREPNVLICFID 110
>pdb|4AEN|A Chain A, Hla-Dr1 With Covalently Linked Clip106-120 In Reversed
Orientation
Length = 207
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 36 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 95
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 96 PITNVPPEVTVLTNSPVELREPNVLICFID 125
>pdb|1AQD|A Chain A, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|D Chain D, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|G Chain G, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|J Chain J, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
Length = 192
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 21 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 80
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 81 PITNVPPEVTVLTNSPVELREPNVLICFID 110
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 200 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 250
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
+LMR +C Q N RP+ LEI++ + E
Sbjct: 251 PDMLLELMR------MCWQYNPKMRPSFLEIISSIKEE 282
>pdb|2WBJ|A Chain A, Tcr Complex
pdb|2WBJ|E Chain E, Tcr Complex
Length = 194
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 21 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 80
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 81 PITNVPPEVTVLTNSPVELREPNVLICFID 110
>pdb|3PDO|A Chain A, Crystal Structure Of Hla-Dr1 With Clip102-120
pdb|3PGC|A Chain A, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGC|D Chain D, Crystal Structure Of Hla-Dr1 With Clip106-120, Flipped
Peptide Orientation
pdb|3PGD|A Chain A, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|3PGD|D Chain D, Crystal Structure Of Hla-Dr1 With Clip106-120, Canonical
Peptide Orientation
pdb|4AH2|A Chain A, Hla-Dr1 With Covalently Linked Clip106-120 In Canonical
Orientation
Length = 193
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 22 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYT 81
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 82 PITNVPPEVTVLTNSPVELREPNVLICFID 111
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein
Phosphatase 1 Alpha (Pp1), The Pp1 Binding And Pdz
Domains Of Spinophilin And The Small Natural Molecular
Toxin Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein
Phosphatase 1 Alpha (Pp1), The Pp1 Binding And Pdz
Domains Of Spinophilin And The Small Natural Molecular
Toxin Nodularin-R
Length = 170
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 13 YGVLPLQIISGKRTSRYYGRNEDLNLLEFA--YELRKNGEGTEFFDPSLDDSSSAWKL 68
+ P+Q+ S Y RNED++ + + YEL K E E F L+ S +
Sbjct: 38 FSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGI 95
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein
Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz
Domains Of Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein
Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz
Domains Of Spinophilin
Length = 170
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 13 YGVLPLQIISGKRTSRYYGRNEDLNLLEFA--YELRKNGEGTEFFDPSLDDSSSAWKL 68
+ P+Q+ S Y RNED++ + + YEL K E E F L+ S +
Sbjct: 38 FSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGI 95
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 2 GIYSMKYDVYSYGVLPLQIISGKRTSRYYGRNEDLNLLEFAYELRKNGEGTEFFDPSLDD 61
G+++ DV+S+GV+ +I + Y G + + +L F E D +
Sbjct: 202 GVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNE-QVLRFVME-------GGLLDKPDNC 252
Query: 62 SSSAWKLMRCMQIALLCVQENAADRPAVLEILTMLNNE 99
+LMR +C Q N RP+ LEI++ + E
Sbjct: 253 PDMLLELMR------MCWQYNPKMRPSFLEIISSIKEE 284
>pdb|4FQX|A Chain A, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|A Chain A, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 191
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 44 ELRKNGEGTEFFDPSLDDSSSAWKLMRCMQIALLCVQ---ENAADRPAVLEILTMLNNET 100
E + +G E F + + W+L + A Q N A A LEI+T +N T
Sbjct: 21 EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIACDKANLEIMTKRSNYT 80
Query: 101 ANIKVPRKPAFSVKSDEDECIPEVKICSVN 130
VP + S + P V IC ++
Sbjct: 81 PITNVPPEVTVLTNSPVELREPNVLICFID 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,186,110
Number of Sequences: 62578
Number of extensions: 162086
Number of successful extensions: 628
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 128
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)