BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038358
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
           Cys2his2 Zinc Finger Induces Structural Rearrangements
           Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
           Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 245 HKCSICLRVFSSGQALGGHKRCH 267
           + CS C R F S QALGGH   H
Sbjct: 7   YTCSFCKREFRSAQALGGHMNVH 29



 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 179 FECNSCKKVFGSHQALGGHRASH 201
           + C+ CK+ F S QALGGH   H
Sbjct: 7   YTCSFCKREFRSAQALGGHMNVH 29


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 81  CSECGKKFWSWKALFGHMRCH 101
           CSECGK F S   L  HMR H
Sbjct: 13  CSECGKAFRSKSYLIIHMRTH 33


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 81  CSECGKKFWSWKALFGHMRCH 101
           CSECGK F S   L  HMR H
Sbjct: 15  CSECGKAFSSKSYLIIHMRTH 35


>pdb|3U8A|A Chain A, Crystal Structure Of Monomeric Reversibly Photoswitchable
           Red Fluorescent Protein Rstagrfp In The Off State
 pdb|3U8A|B Chain B, Crystal Structure Of Monomeric Reversibly Photoswitchable
           Red Fluorescent Protein Rstagrfp In The Off State
 pdb|3U8A|C Chain C, Crystal Structure Of Monomeric Reversibly Photoswitchable
           Red Fluorescent Protein Rstagrfp In The Off State
 pdb|3U8A|D Chain D, Crystal Structure Of Monomeric Reversibly Photoswitchable
           Red Fluorescent Protein Rstagrfp In The Off State
 pdb|3U8C|A Chain A, Crystal Structure Of Monomeric Reversibly Photoswitchable
           Red Fluorescent Protein Rstagrfp In The On State
 pdb|3U8C|B Chain B, Crystal Structure Of Monomeric Reversibly Photoswitchable
           Red Fluorescent Protein Rstagrfp In The On State
 pdb|3U8C|C Chain C, Crystal Structure Of Monomeric Reversibly Photoswitchable
           Red Fluorescent Protein Rstagrfp In The On State
 pdb|3U8C|D Chain D, Crystal Structure Of Monomeric Reversibly Photoswitchable
           Red Fluorescent Protein Rstagrfp In The On State
          Length = 243

 Score = 27.7 bits (60), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 96  GHMRCHPERQWRGINPPPNFRRPASP-----VKEVTSVENVMTVEDHEVAAC 142
           GH+ C+ +  +R  NP  N + P        ++ +   +    VE HEVA  
Sbjct: 178 GHLICNLKTTYRSKNPAKNLKMPGVYFVDHRLERIKEADKETYVEQHEVAVA 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,368,436
Number of Sequences: 62578
Number of extensions: 321554
Number of successful extensions: 797
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 39
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)