BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038359
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K88|A Chain A, Association Of Subunit D (Vma6p) And E (Vma4p) With G
          (Vma10p) And The Nmr Solution Structure Of Subunit G
          (G1- 59) Of The Saccharomyces Cerevisiae V1vo Atpase
          Length = 60

 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 7  QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYK 50
          + GI  LL AE+EA  IVS AR  +  +LKQAK +A KE+  YK
Sbjct: 5  KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYK 48


>pdb|4DL0|K Chain K, Crystal Structure Of The Heterotrimeric Egchead
          Peripheral Stalk Complex Of The Yeast Vacuolar Atpase
 pdb|4DL0|G Chain G, Crystal Structure Of The Heterotrimeric Egchead
          Peripheral Stalk Complex Of The Yeast Vacuolar Atpase
 pdb|4EFA|G Chain G, Crystal Structure Of The Heterotrimeric Egchead
          Peripheral Stalk Complex Of The Yeast Vacuolar Atpase -
          Second Conformation
          Length = 119

 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 28/42 (66%)

Query: 9  GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYK 50
          GI  LL AE+EA  IVS AR  +  +LKQAK +A KE+  YK
Sbjct: 11 GIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYK 52


>pdb|1SNY|A Chain A, Carbonyl Reductase Sniffer Of D. Melanogaster
          Length = 267

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 6   GQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETE----YQKRI 61
           G G ++ LLN  Q  QH+ ++ RN + A  K+ +D A+    ++   ++      Y K +
Sbjct: 34  GLGLVKALLNLPQPPQHLFTTCRNREQA--KELEDLAKNHSNIHILEIDLRNFDAYDKLV 91

Query: 62  SETSG-SSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLL 101
           ++  G + +  +  L     I  K  + +A++ S+E+ D L
Sbjct: 92  ADIEGVTKDQGLNVLFNNAGIAPKSARITAVR-SQELLDTL 131


>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
           Sexta Apolipophorin-Iii
          Length = 166

 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 35  LKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETE---IKIKQLKDSAL 91
           L++A  + EKE   +K  L+   Q  + E+   ++     +EE  +    KIKQ  D  +
Sbjct: 90  LRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFV 149

Query: 92  KVSKEV 97
           K ++EV
Sbjct: 150 KHAEEV 155


>pdb|2IC7|A Chain A, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus
 pdb|2IC7|B Chain B, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus
 pdb|2IC7|C Chain C, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus
 pdb|2P2O|A Chain A, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus P2(1) Crystal Form
 pdb|2P2O|B Chain B, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus P2(1) Crystal Form
 pdb|2P2O|C Chain C, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus P2(1) Crystal Form
 pdb|2P2O|D Chain D, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus P2(1) Crystal Form
 pdb|2P2O|E Chain E, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus P2(1) Crystal Form
 pdb|2P2O|F Chain F, Crystal Structure Of Maltose Transacetylase From
          Geobacillus Kaustophilus P2(1) Crystal Form
          Length = 185

 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 35 LKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIK 82
          L + ++ A + V LY   LETEY KR         ST +RL  E   +
Sbjct: 21 LVKERERARRLVRLYNETLETEYDKRTGLLKELFGSTGERLFIEPNFR 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.122    0.300 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,476,418
Number of Sequences: 62578
Number of extensions: 74435
Number of successful extensions: 289
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 41
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)