Query 038359
Match_columns 110
No_of_seqs 104 out of 264
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01147 V_ATP_synt_G vacuola 100.0 1.8E-42 3.9E-47 243.6 15.7 108 1-110 1-108 (113)
2 KOG1772 Vacuolar H+-ATPase V1 100.0 1.2E-41 2.6E-46 236.2 15.1 108 1-110 1-108 (108)
3 PF03179 V-ATPase_G: Vacuolar 100.0 1.6E-31 3.6E-36 183.3 11.1 105 5-109 1-105 (105)
4 COG2811 NtpF Archaeal/vacuolar 98.1 0.00016 3.4E-09 50.9 12.8 100 7-108 6-105 (108)
5 PRK08404 V-type ATP synthase s 97.9 0.0011 2.3E-08 45.8 13.6 97 10-106 5-101 (103)
6 PRK01005 V-type ATP synthase s 97.7 0.0021 4.6E-08 49.3 13.0 71 12-82 21-91 (207)
7 TIGR02926 AhaH ATP synthase ar 96.8 0.054 1.2E-06 35.7 10.6 70 11-87 2-71 (85)
8 PRK09173 F0F1 ATP synthase sub 96.7 0.073 1.6E-06 38.4 12.1 52 11-62 61-112 (159)
9 PRK14471 F0F1 ATP synthase sub 96.6 0.1 2.2E-06 37.8 12.0 47 12-58 68-114 (164)
10 CHL00019 atpF ATP synthase CF0 96.6 0.11 2.5E-06 38.4 12.3 36 12-47 84-119 (184)
11 PRK14475 F0F1 ATP synthase sub 96.5 0.12 2.7E-06 37.7 12.3 90 12-104 70-161 (167)
12 PRK07352 F0F1 ATP synthase sub 96.4 0.17 3.7E-06 37.1 12.3 51 11-61 78-128 (174)
13 TIGR01144 ATP_synt_b ATP synth 96.3 0.22 4.7E-06 35.2 12.0 42 11-52 54-95 (147)
14 PF01991 vATP-synt_E: ATP synt 96.3 0.27 5.8E-06 35.8 12.9 48 15-62 5-52 (198)
15 PRK14472 F0F1 ATP synthase sub 96.2 0.24 5.3E-06 36.3 12.2 48 11-58 77-124 (175)
16 PF06188 HrpE: HrpE/YscL/FliH 96.2 0.36 7.8E-06 36.4 13.3 50 12-61 24-73 (191)
17 PRK13461 F0F1 ATP synthase sub 96.1 0.31 6.8E-06 35.1 12.1 41 11-51 64-104 (159)
18 PRK13453 F0F1 ATP synthase sub 96.1 0.3 6.4E-06 36.0 12.2 52 11-62 77-132 (173)
19 PRK02292 V-type ATP synthase s 96.0 0.31 6.7E-06 35.9 12.2 49 15-63 13-61 (188)
20 PRK01558 V-type ATP synthase s 96.0 0.45 9.9E-06 35.9 13.1 40 15-54 19-58 (198)
21 PRK13460 F0F1 ATP synthase sub 95.9 0.4 8.6E-06 35.2 12.1 37 13-49 77-113 (173)
22 PRK00106 hypothetical protein; 95.9 0.21 4.5E-06 43.5 12.0 53 9-61 33-85 (535)
23 PF12072 DUF3552: Domain of un 95.8 0.098 2.1E-06 39.5 8.9 56 9-64 25-80 (201)
24 TIGR03825 FliH_bacil flagellar 95.7 0.54 1.2E-05 36.6 12.9 40 13-52 46-88 (255)
25 PRK06231 F0F1 ATP synthase sub 95.7 0.44 9.6E-06 36.3 12.1 52 11-62 107-162 (205)
26 PRK03963 V-type ATP synthase s 95.6 0.59 1.3E-05 34.6 12.2 89 14-104 13-113 (198)
27 PRK14473 F0F1 ATP synthase sub 95.6 0.59 1.3E-05 33.8 12.4 50 12-61 68-121 (164)
28 PRK13455 F0F1 ATP synthase sub 95.5 0.55 1.2E-05 34.7 11.8 19 12-30 87-105 (184)
29 PRK01194 V-type ATP synthase s 95.5 0.3 6.5E-06 36.6 10.3 91 15-106 13-115 (185)
30 PRK13454 F0F1 ATP synthase sub 95.4 0.3 6.4E-06 36.4 10.1 27 75-101 136-162 (181)
31 PRK13428 F0F1 ATP synthase sub 95.3 0.5 1.1E-05 39.9 12.3 47 12-58 61-107 (445)
32 CHL00118 atpG ATP synthase CF0 95.1 0.44 9.6E-06 34.4 10.0 75 19-100 78-152 (156)
33 PF00430 ATP-synt_B: ATP synth 95.0 0.57 1.2E-05 32.0 9.8 67 17-90 53-119 (132)
34 TIGR03321 alt_F1F0_F0_B altern 95.0 0.98 2.1E-05 35.0 12.2 53 11-63 64-120 (246)
35 PRK14474 F0F1 ATP synthase sub 94.7 1.3 2.8E-05 34.7 12.2 57 9-65 62-122 (250)
36 PRK09174 F0F1 ATP synthase sub 94.6 1.5 3.3E-05 33.4 13.7 77 21-104 111-187 (204)
37 PRK06568 F0F1 ATP synthase sub 94.4 0.84 1.8E-05 33.7 10.0 62 21-89 62-123 (154)
38 TIGR02926 AhaH ATP synthase ar 94.2 0.81 1.8E-05 30.0 8.7 50 9-58 11-60 (85)
39 COG0711 AtpF F0F1-type ATP syn 94.0 1.7 3.7E-05 31.8 14.1 71 14-91 57-127 (161)
40 PRK13454 F0F1 ATP synthase sub 93.8 2 4.4E-05 31.9 13.2 48 14-61 93-140 (181)
41 PRK12704 phosphodiesterase; Pr 93.6 2.7 5.9E-05 36.3 13.0 51 12-62 32-82 (520)
42 CHL00118 atpG ATP synthase CF0 93.4 2.2 4.7E-05 30.8 13.5 30 32-61 80-109 (156)
43 PRK03963 V-type ATP synthase s 93.2 2.6 5.6E-05 31.1 13.1 46 17-62 5-50 (198)
44 COG0711 AtpF F0F1-type ATP syn 92.7 2.9 6.3E-05 30.5 12.8 50 11-60 65-114 (161)
45 PRK05759 F0F1 ATP synthase sub 92.7 2.6 5.6E-05 29.9 14.3 81 18-105 59-139 (156)
46 PRK06669 fliH flagellar assemb 92.6 4.1 8.9E-05 32.0 12.7 37 8-44 78-114 (281)
47 TIGR03319 YmdA_YtgF conserved 92.6 5.8 0.00013 34.3 13.5 51 12-62 26-76 (514)
48 PRK08476 F0F1 ATP synthase sub 92.5 2.8 6.2E-05 29.9 13.8 92 9-100 42-137 (141)
49 PRK01005 V-type ATP synthase s 92.5 3.9 8.5E-05 31.4 13.6 43 7-51 7-49 (207)
50 PRK05759 F0F1 ATP synthase sub 92.2 3 6.6E-05 29.5 12.0 49 11-59 63-115 (156)
51 PRK07353 F0F1 ATP synthase sub 91.9 3.2 6.8E-05 29.0 13.5 77 19-102 61-137 (140)
52 PRK13428 F0F1 ATP synthase sub 91.8 7.1 0.00015 33.0 14.1 46 17-62 55-100 (445)
53 PRK09174 F0F1 ATP synthase sub 91.6 4.8 0.0001 30.7 13.9 40 22-61 101-140 (204)
54 PRK14471 F0F1 ATP synthase sub 91.3 4.2 9.1E-05 29.3 14.3 75 21-102 66-140 (164)
55 PRK08404 V-type ATP synthase s 91.2 3.5 7.7E-05 28.2 10.4 51 11-61 17-71 (103)
56 PRK08475 F0F1 ATP synthase sub 91.0 4.8 0.0001 29.5 12.0 25 35-59 83-107 (167)
57 PRK14473 F0F1 ATP synthase sub 91.0 4.6 9.9E-05 29.1 14.3 71 32-102 66-140 (164)
58 PRK06568 F0F1 ATP synthase sub 90.9 5.1 0.00011 29.5 14.2 47 12-58 64-110 (154)
59 PRK00106 hypothetical protein; 90.6 9.3 0.0002 33.4 12.7 47 13-59 48-94 (535)
60 PRK08476 F0F1 ATP synthase sub 90.5 4.9 0.00011 28.7 13.5 31 15-45 59-89 (141)
61 PRK13460 F0F1 ATP synthase sub 90.2 5.7 0.00012 29.0 14.3 80 18-104 71-150 (173)
62 CHL00019 atpF ATP synthase CF0 90.1 6.1 0.00013 29.1 14.3 44 18-61 79-122 (184)
63 PRK13455 F0F1 ATP synthase sub 89.7 6.5 0.00014 28.9 14.2 75 20-101 84-158 (184)
64 PRK01558 V-type ATP synthase s 89.5 7.4 0.00016 29.3 11.6 31 13-43 28-58 (198)
65 PF00430 ATP-synt_B: ATP synth 89.2 5.3 0.00011 27.1 9.8 87 8-105 33-119 (132)
66 PRK02292 V-type ATP synthase s 89.1 7.2 0.00016 28.6 11.5 77 13-89 22-99 (188)
67 PRK09098 type III secretion sy 88.8 9.6 0.00021 29.6 12.1 40 19-58 40-79 (233)
68 TIGR01144 ATP_synt_b ATP synth 88.5 6.8 0.00015 27.5 14.3 81 19-106 51-131 (147)
69 PRK14475 F0F1 ATP synthase sub 87.7 8.7 0.00019 27.9 14.3 78 19-103 66-143 (167)
70 PRK08475 F0F1 ATP synthase sub 86.9 10 0.00022 27.8 13.9 47 15-61 74-120 (167)
71 PRK13453 F0F1 ATP synthase sub 86.5 11 0.00023 27.7 14.3 72 33-104 77-152 (173)
72 PRK14472 F0F1 ATP synthase sub 86.3 11 0.00023 27.6 14.3 76 20-102 75-150 (175)
73 PRK10930 FtsH protease regulat 85.6 13 0.00028 31.4 10.2 34 13-46 265-298 (419)
74 PRK09173 F0F1 ATP synthase sub 85.5 11 0.00024 27.0 13.6 77 21-104 60-136 (159)
75 PRK06569 F0F1 ATP synthase sub 85.5 13 0.00027 27.6 13.6 72 19-108 66-137 (155)
76 PRK07352 F0F1 ATP synthase sub 84.6 13 0.00029 27.1 14.3 41 20-60 76-116 (174)
77 TIGR03319 YmdA_YtgF conserved 84.5 24 0.00051 30.6 11.5 50 16-65 19-68 (514)
78 PRK06231 F0F1 ATP synthase sub 84.3 16 0.00034 27.7 14.3 28 34-61 108-135 (205)
79 PF03179 V-ATPase_G: Vacuolar 83.8 11 0.00023 25.3 8.1 51 14-64 21-71 (105)
80 PRK15354 type III secretion sy 83.1 21 0.00045 28.1 10.7 63 13-75 47-109 (224)
81 PRK14474 F0F1 ATP synthase sub 83.0 20 0.00044 28.0 14.3 66 19-91 61-126 (250)
82 TIGR03321 alt_F1F0_F0_B altern 83.0 19 0.00042 27.7 14.3 42 19-60 61-102 (246)
83 PRK06669 fliH flagellar assemb 81.9 23 0.00049 27.8 12.8 49 12-60 71-119 (281)
84 TIGR02499 HrpE_YscL_not type I 81.9 15 0.00034 25.8 10.5 27 19-45 14-40 (166)
85 PRK13461 F0F1 ATP synthase sub 81.6 17 0.00036 26.0 14.3 32 31-62 62-93 (159)
86 PRK07353 F0F1 ATP synthase sub 80.9 16 0.00035 25.4 13.8 36 28-63 59-94 (140)
87 COG1390 NtpE Archaeal/vacuolar 80.9 22 0.00048 27.0 11.1 47 15-61 14-60 (194)
88 PF01991 vATP-synt_E: ATP synt 80.4 19 0.00041 25.9 12.5 38 15-52 16-53 (198)
89 TIGR03825 FliH_bacil flagellar 79.5 27 0.00058 27.1 11.9 51 12-62 34-91 (255)
90 TIGR01933 hflK HflK protein. H 76.0 30 0.00065 26.4 8.6 45 9-53 154-198 (261)
91 PRK06937 type III secretion sy 75.9 31 0.00066 25.8 9.3 22 19-40 31-52 (204)
92 PRK12705 hypothetical protein; 75.2 56 0.0012 28.5 12.6 46 19-64 34-79 (508)
93 PRK10930 FtsH protease regulat 74.9 10 0.00022 32.1 6.1 37 10-46 251-287 (419)
94 cd03404 Band_7_HflK Band_7_Hfl 73.7 38 0.00082 25.9 11.8 50 8-57 180-229 (266)
95 KOG0163 Myosin class VI heavy 71.2 89 0.0019 29.5 11.3 86 9-99 928-1013(1259)
96 PRK06569 F0F1 ATP synthase sub 71.1 40 0.00086 25.0 11.4 41 44-84 58-98 (155)
97 TIGR01933 hflK HflK protein. H 69.9 27 0.00059 26.6 7.1 38 11-48 167-204 (261)
98 COG2811 NtpF Archaeal/vacuolar 69.8 36 0.00077 24.0 11.2 58 11-68 21-78 (108)
99 PRK06328 type III secretion sy 68.5 52 0.0011 25.3 10.5 30 18-47 29-58 (223)
100 cd03404 Band_7_HflK Band_7_Hfl 66.8 55 0.0012 25.0 10.6 25 16-40 199-223 (266)
101 cd03407 Band_7_4 A subgroup of 63.6 42 0.00092 25.9 7.1 41 8-48 147-187 (262)
102 PRK09098 type III secretion sy 62.5 71 0.0015 24.8 11.2 33 12-44 44-76 (233)
103 PRK12704 phosphodiesterase; Pr 61.1 1.1E+02 0.0024 26.5 11.2 48 18-65 27-74 (520)
104 PF06188 HrpE: HrpE/YscL/FliH 61.1 68 0.0015 24.1 11.9 36 12-47 35-70 (191)
105 PF14942 Muted: Organelle biog 59.2 67 0.0015 23.4 7.1 51 8-60 80-130 (145)
106 COG1390 NtpE Archaeal/vacuolar 57.9 81 0.0018 23.9 11.4 48 14-61 2-49 (194)
107 TIGR02499 HrpE_YscL_not type I 57.7 63 0.0014 22.6 8.5 21 13-33 19-39 (166)
108 PF01468 GA: GA module; Inter 55.6 30 0.00065 21.2 4.1 26 25-50 2-29 (60)
109 PRK06397 V-type ATP synthase s 49.4 90 0.002 21.9 8.4 40 22-61 24-63 (111)
110 PRK15322 invasion protein OrgB 45.9 1.4E+02 0.0031 23.3 11.4 79 14-106 8-89 (210)
111 PF06635 NolV: Nodulation prot 45.8 1.4E+02 0.0031 23.2 8.1 54 8-61 31-99 (207)
112 PRK01194 V-type ATP synthase s 44.1 1.3E+02 0.0028 22.3 11.4 86 17-105 4-89 (185)
113 PF05103 DivIVA: DivIVA protei 42.6 8.2 0.00018 26.3 0.0 36 12-47 68-103 (131)
114 cd03405 Band_7_HflC Band_7_Hfl 37.6 92 0.002 23.2 5.1 6 96-101 227-232 (242)
115 cd03401 Band_7_prohibitin Band 32.2 1.3E+02 0.0028 21.6 5.0 14 35-48 175-188 (196)
116 PF12750 Maff2: Maff2 family; 31.3 23 0.00049 23.0 0.7 11 5-15 41-51 (70)
117 PRK10428 hypothetical protein; 30.1 1.5E+02 0.0033 18.9 4.5 36 13-52 29-64 (69)
118 cd03407 Band_7_4 A subgroup of 29.4 1.5E+02 0.0034 22.7 5.2 33 12-44 162-194 (262)
119 PRK15322 invasion protein OrgB 27.7 3E+02 0.0065 21.5 6.8 42 14-55 19-68 (210)
120 PRK11677 hypothetical protein; 26.2 2.5E+02 0.0055 20.2 7.2 29 30-58 29-57 (134)
121 PF01086 Clathrin_lg_ch: Clath 25.8 1.7E+02 0.0036 22.5 4.8 31 35-65 136-166 (225)
122 TIGR01932 hflC HflC protein. H 25.6 3.5E+02 0.0076 21.6 10.2 50 15-68 231-280 (317)
123 PF11629 Mst1_SARAH: C termina 24.0 1.8E+02 0.0039 17.7 4.8 29 73-101 18-46 (49)
124 PRK00409 recombination and DNA 24.0 5.6E+02 0.012 23.4 12.0 34 28-61 561-594 (782)
125 PF03938 OmpH: Outer membrane 22.4 2.7E+02 0.0059 19.2 9.1 24 39-62 45-68 (158)
126 TIGR01932 hflC HflC protein. H 22.0 1.7E+02 0.0036 23.5 4.3 41 8-48 211-253 (317)
127 PF08655 DASH_Ask1: DASH compl 21.8 1.7E+02 0.0037 18.7 3.5 33 73-105 2-34 (66)
128 PF00938 Lipoprotein_3: Lipopr 21.3 1.1E+02 0.0025 20.7 2.7 27 78-104 27-53 (87)
129 cd03403 Band_7_stomatin_like B 20.7 3.4E+02 0.0074 19.7 8.2 39 8-46 148-186 (215)
No 1
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=100.00 E-value=1.8e-42 Score=243.58 Aligned_cols=108 Identities=38% Similarity=0.481 Sum_probs=105.9
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 038359 1 MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETE 80 (110)
Q Consensus 1 m~~~~~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~ 80 (110)
|+|+ ++|||+||.||++|+.||+.||++|++||||||+||++||+.||.++|.+|++|+++++|+++....+|+++|+
T Consensus 1 M~sq--~~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~ 78 (113)
T TIGR01147 1 MASQ--TQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQ 78 (113)
T ss_pred CCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 7886 56999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 038359 81 IKIKQLKDSALKVSKEVTDLLIKYITTIKN 110 (110)
Q Consensus 81 ~~i~~i~~~~~~nk~~Vv~~Ll~~V~~V~p 110 (110)
.+|+.|+.+|++|++.||++||++||+|+|
T Consensus 79 ~ki~~ik~~~~~~~~~Vv~~Ll~~V~~v~p 108 (113)
T TIGR01147 79 AKIREIKKAVQKNKDAVIKDLLHLVCDISP 108 (113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999998
No 2
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=100.00 E-value=1.2e-41 Score=236.15 Aligned_cols=108 Identities=49% Similarity=0.641 Sum_probs=106.2
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 038359 1 MDSFRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETE 80 (110)
Q Consensus 1 m~~~~~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~ 80 (110)
|+| .++||||||+||++|.+||++||++|.+||||||+||+.||+.||.++|.+|+.|++.++|+.+.+..+++.+|+
T Consensus 1 M~S--q~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~ 78 (108)
T KOG1772|consen 1 MAS--QSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETD 78 (108)
T ss_pred Ccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 777 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 038359 81 IKIKQLKDSALKVSKEVTDLLIKYITTIKN 110 (110)
Q Consensus 81 ~~i~~i~~~~~~nk~~Vv~~Ll~~V~~V~p 110 (110)
.+|..|+.++.+|+++||++||.+||||+|
T Consensus 79 ~ki~~lk~~~~k~~~~Vv~~LL~~V~~v~~ 108 (108)
T KOG1772|consen 79 DKIAGLKTSAQKNSDDVVDMLLKYVCDVKP 108 (108)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999998
No 3
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=99.97 E-value=1.6e-31 Score=183.30 Aligned_cols=105 Identities=43% Similarity=0.617 Sum_probs=86.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 038359 5 RGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIK 84 (110)
Q Consensus 5 ~~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~ 84 (110)
++|+|||+||.||++|.+||.+||++|.+||++|+.+|+.||+.||.++|.+|+.+...+.|+.+.....|..+|..+|.
T Consensus 1 ~~~~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~ 80 (105)
T PF03179_consen 1 SQSDGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIE 80 (105)
T ss_dssp -----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccC
Q 038359 85 QLKDSALKVSKEVTDLLIKYITTIK 109 (110)
Q Consensus 85 ~i~~~~~~nk~~Vv~~Ll~~V~~V~ 109 (110)
.|+..|.+|++.||++||+.||+|+
T Consensus 81 ~i~~~~~~~~~~vv~~ll~~V~~Vk 105 (105)
T PF03179_consen 81 EIKKSASKNKDKVVDMLLSRVCDVK 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHhHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999996
No 4
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=98.15 E-value=0.00016 Score=50.87 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 038359 7 QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQL 86 (110)
Q Consensus 7 s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i 86 (110)
+.-|-.+-.||-.|.+.|.+|+..+.++++.|+.+|...|+.+-..-+..++++....-.........+-.++..++..|
T Consensus 6 ~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~ 85 (108)
T COG2811 6 SEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAI 85 (108)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999998887666666667777888888888887
Q ss_pred HHHHHHhHHHHHHHHHHhhccc
Q 038359 87 KDSALKVSKEVTDLLIKYITTI 108 (110)
Q Consensus 87 ~~~~~~nk~~Vv~~Ll~~V~~V 108 (110)
... -|.++|+.++++-++.+
T Consensus 86 ~~k--a~~~k~~~~a~~~~~~~ 105 (108)
T COG2811 86 LSK--AAEGKVVEAALSEFLAI 105 (108)
T ss_pred HHH--hHhhHHHHHHHHHHHHH
Confidence 776 67888888888877644
No 5
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=97.92 E-value=0.0011 Score=45.76 Aligned_cols=97 Identities=29% Similarity=0.301 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 038359 10 IQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDS 89 (110)
Q Consensus 10 IQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~ 89 (110)
|...=.||.++..++..||......|..|+.+|.++.+....+-..+..................+-.+...++..|...
T Consensus 5 i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~ 84 (103)
T PRK08404 5 IKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVK 84 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999998888888777777777666555555555566677788888999999
Q ss_pred HHHhHHHHHHHHHHhhc
Q 038359 90 ALKVSKEVTDLLIKYIT 106 (110)
Q Consensus 90 ~~~nk~~Vv~~Ll~~V~ 106 (110)
...+.+.+|++++..+.
T Consensus 85 a~~k~~~av~~~~~~~~ 101 (103)
T PRK08404 85 AEENFETAVSEAIKLIR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998764
No 6
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.67 E-value=0.0021 Score=49.33 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIK 82 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~ 82 (110)
.|-.|+.+|..|+.+|++...+-+.+|+.+|++-++.++.+-+.+.+...+............+..+....
T Consensus 21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~ 91 (207)
T PRK01005 21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENK 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999888766666555555555554443
No 7
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=96.75 E-value=0.054 Score=35.66 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLK 87 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~ 87 (110)
-+|=.||.++..+|..|+......|.+|+.+|...++.-...-+.+-..... .....++.+...-+.+++
T Consensus 2 ~~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~-------~Ak~ei~~e~~~a~~e~k 71 (85)
T TIGR02926 2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIK-------EAEEEIEKEAEKIREEGE 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999999999998888777777665553 233344444444444443
No 8
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=96.75 E-value=0.073 Score=38.43 Aligned_cols=52 Identities=25% Similarity=0.186 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
.+|-.|..+|+.|+..|+..-...+.+|+.+|..+++.....-+.+......
T Consensus 61 ~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~ 112 (159)
T PRK09173 61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAET 112 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888888888888876665555554443
No 9
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=96.58 E-value=0.1 Score=37.82 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ 58 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk 58 (110)
.|-.|..+|+.|+..|+........++..+|..|++....+-..+..
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~ 114 (164)
T PRK14471 68 LLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIE 114 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777765555544444444444444444444333
No 10
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=96.55 E-value=0.11 Score=38.44 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVT 47 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe 47 (110)
+|-.|.++|..|+..|+..-.+.......+|..|++
T Consensus 84 ~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~ 119 (184)
T CHL00019 84 RLRQAELEADEIRVNGYSEIEREKENLINQAKEDLE 119 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777776666543333333333333333
No 11
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=96.53 E-value=0.12 Score=37.72 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH--HHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIK--QLKDS 89 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~--~i~~~ 89 (110)
+|-.|..+|++|+..|+..-.+...++...|..|.+.....-+.+...........-.....++--+...+|- .+..
T Consensus 70 ~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~~l~~- 148 (167)
T PRK14475 70 EREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAARLAG- 148 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCH-
Confidence 4556667777777777776666666666666666666665555555544443333333333333333333332 2211
Q ss_pred HHHhHHHHHHHHHHh
Q 038359 90 ALKVSKEVTDLLIKY 104 (110)
Q Consensus 90 ~~~nk~~Vv~~Ll~~ 104 (110)
.....+||.+|+.
T Consensus 149 --~~~~~lid~~i~~ 161 (167)
T PRK14475 149 --AKSDPLVDAAIGQ 161 (167)
T ss_pred --HHHHHHHHHHHHH
Confidence 2233556655544
No 12
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=96.38 E-value=0.17 Score=37.09 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
.+|-.|.++|+.|+..|+..-.+....+..+|..+++..+.+-..+.....
T Consensus 78 ~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~ 128 (174)
T PRK07352 78 QKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQ 128 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888776666666666666666666666655555443
No 13
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=96.29 E-value=0.22 Score=35.23 Aligned_cols=42 Identities=33% Similarity=0.366 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSH 52 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~ 52 (110)
..|-.|..+|..|+..|+..-.+...++..+|..+++....+
T Consensus 54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~ 95 (147)
T TIGR01144 54 VILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQ 95 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666554444444444444444333333
No 14
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=96.29 E-value=0.27 Score=35.79 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
+|+.+|.+|+++|+..-.+-+.+|+.+|...++.+....+.+......
T Consensus 5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (198)
T PF01991_consen 5 EAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKE 52 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998887777777664443
No 15
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=96.19 E-value=0.24 Score=36.33 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ 58 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk 58 (110)
++|-.|+.+|+.|+..|+..-.+-..++..+|..|++.....-..+..
T Consensus 77 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~ 124 (175)
T PRK14472 77 ELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIE 124 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888887777765444444444444444444444444433
No 16
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=96.18 E-value=0.36 Score=36.42 Aligned_cols=50 Identities=28% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
..|.+.+.|.+|++.||..-.+-|.+|+.+|+.-++.-+.+-.+.|....
T Consensus 24 e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a 73 (191)
T PF06188_consen 24 EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQA 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999976666677776433
No 17
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=96.08 E-value=0.31 Score=35.09 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKS 51 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~ 51 (110)
++|-.|..+|..|+.+|+..-.........+|..|++....
T Consensus 64 ~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~ 104 (159)
T PRK13461 64 RELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIE 104 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777665443333333333333333333
No 18
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=96.07 E-value=0.3 Score=35.98 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLK----MARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r----~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
++|-.|+.+|+.|+.+|+..- ...+.+|+.+|.+-++.-+.+-+.+......
T Consensus 77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~ 132 (173)
T PRK13453 77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIA 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888777764 4455555555555555555555555544443
No 19
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.04 E-value=0.31 Score=35.94 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISE 63 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~ 63 (110)
.|+.+|.+|.++|++.-..-+.+|+.+|+...+.+...-+.+.......
T Consensus 13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r 61 (188)
T PRK02292 13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQ 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999988888888876653
No 20
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=95.98 E-value=0.45 Score=35.87 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLE 54 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE 54 (110)
+|+.+|..|+++|++.-..-+.+|+.+|+.-++..+.+-+
T Consensus 19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999988777555555
No 21
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=95.88 E-value=0.4 Score=35.19 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLY 49 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~y 49 (110)
|-.|..+|..|+..|+..-.+...+...+|..|++..
T Consensus 77 l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~ 113 (173)
T PRK13460 77 LNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQ 113 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655553333333333333333333
No 22
>PRK00106 hypothetical protein; Provisional
Probab=95.86 E-value=0.21 Score=43.48 Aligned_cols=53 Identities=28% Similarity=0.124 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
.=-+||.|++.|.+|+.+|+..-..-+++|..+|+.++..++.+-++++....
T Consensus 33 ~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R 85 (535)
T PRK00106 33 AELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYR 85 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33478999999999998888876555666666665555555555555544433
No 23
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=95.83 E-value=0.098 Score=39.53 Aligned_cols=56 Identities=32% Similarity=0.326 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038359 9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISET 64 (110)
Q Consensus 9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~ 64 (110)
+=..|..|+..|..|+..|+..=....+++..+|..++-.+|.+-|.+|+....+.
T Consensus 25 ~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el 80 (201)
T PF12072_consen 25 NRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999998889999999999999999999999999777654
No 24
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=95.74 E-value=0.54 Score=36.57 Aligned_cols=40 Identities=28% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMARLKQA---KDEAEKEVTLYKSH 52 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~rLKqA---K~eA~~EIe~yr~~ 52 (110)
|=.|..+|+.||.+|+..-..-+.++ ..+|..|.+..+..
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~ 88 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQE 88 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887755554444 34444444444433
No 25
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=95.70 E-value=0.44 Score=36.26 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLK----MARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r----~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
..|-.|..+|+.|+..|+..- ...+.+|+.+|.+.++.-+.+-+.+-+....
T Consensus 107 ~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~ 162 (205)
T PRK06231 107 QRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKE 162 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888887764 4556666666666666666666655555543
No 26
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=95.60 E-value=0.59 Score=34.58 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------hcCCchhHHHHHHHHHHH
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR----ISE--------TSGSSESTVKRLEEETEI 81 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~----~~~--------~~g~~~~~~~~l~~et~~ 81 (110)
=.|..+|..|+++|+..-.+.+.+|..+|+.+.+.+...-+.+-... .+. ...-.......+=.++..
T Consensus 13 ~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~ 92 (198)
T PRK03963 13 REAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRE 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999888888888888876665544333332211 111 111223334444455556
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 038359 82 KIKQLKDSALKVSKEVTDLLIKY 104 (110)
Q Consensus 82 ~i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
+|..+... .+++-+.++|...
T Consensus 93 ~l~~~~~~--~Y~~~l~~li~~a 113 (198)
T PRK03963 93 RLAELPED--EYFETLKALTKEA 113 (198)
T ss_pred HHHhhhhh--hHHHHHHHHHHHH
Confidence 66655543 4555555555544
No 27
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=95.56 E-value=0.59 Score=33.81 Aligned_cols=50 Identities=34% Similarity=0.347 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
.|-.|..+|..|+..||.. +...+.+|+.+|...++..+.+-+.+-....
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~ 121 (164)
T PRK14473 68 ELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRML 121 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666653 3444555555555555554444444444333
No 28
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=95.54 E-value=0.55 Score=34.70 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNL 30 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~ 30 (110)
+|-.|..+|+.|+..|+..
T Consensus 87 ~L~~A~~ea~~Ii~~A~~~ 105 (184)
T PRK13455 87 KQREVQEQADRIVAAAKDE 105 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444
No 29
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=95.50 E-value=0.3 Score=36.59 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGS------------SESTVKRLEEETEIK 82 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~------------~~~~~~~l~~et~~~ 82 (110)
.|+.+|..|+.+|++.-..-++.|+.+|+...+.|-..-+.+-........++ .......+=..+..+
T Consensus 13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~ 92 (185)
T PRK01194 13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEH 92 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999888887776655444322 122333334445555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc
Q 038359 83 IKQLKDSALKVSKEVTDLLIKYIT 106 (110)
Q Consensus 83 i~~i~~~~~~nk~~Vv~~Ll~~V~ 106 (110)
|..+-..- .+++-+.++|+..++
T Consensus 93 L~~l~~~~-~Y~~~L~~LI~~a~~ 115 (185)
T PRK01194 93 LMNITKSK-EYDSILNKMIEVAIK 115 (185)
T ss_pred HHcccCCc-hHHHHHHHHHHHHHH
Confidence 55554211 555555555555544
No 30
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=95.44 E-value=0.3 Score=36.39 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038359 75 LEEETEIKIKQLKDSALKVSKEVTDLL 101 (110)
Q Consensus 75 l~~et~~~i~~i~~~~~~nk~~Vv~~L 101 (110)
++.+...-+..+...+..--..++..|
T Consensus 136 I~~~k~~a~~~l~~~a~~lA~~i~~kL 162 (181)
T PRK13454 136 IAEIRAGALESVEEVAKDTAEALVAAL 162 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444
No 31
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=95.34 E-value=0.5 Score=39.86 Aligned_cols=47 Identities=23% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ 58 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk 58 (110)
.|-.|..+|+.|+.+|+..-.+...++..+|..|++..+.+-..+..
T Consensus 61 ~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie 107 (445)
T PRK13428 61 AVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQ 107 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777665555555555555555544444444444
No 32
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=95.14 E-value=0.44 Score=34.43 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT 98 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv 98 (110)
++..++.+||..-...+.+|+.+|+.+.+....+-..+...... ....+++.+...-+..++..+..-...++
T Consensus 78 e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~-------~a~~~i~~ek~~a~~~l~~~v~~lA~~ia 150 (156)
T CHL00118 78 QYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLN-------EATKQLEAQKEKALKSLEEQVDTLSDQIE 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333332 23334444555555555544444444333
Q ss_pred HH
Q 038359 99 DL 100 (110)
Q Consensus 99 ~~ 100 (110)
..
T Consensus 151 ~k 152 (156)
T CHL00118 151 EK 152 (156)
T ss_pred Hh
Confidence 33
No 33
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=95.01 E-value=0.57 Score=32.01 Aligned_cols=67 Identities=27% Similarity=0.296 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 038359 17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSA 90 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~ 90 (110)
..++..++..||.....-+.+|+.+|..+++....+-+.+...... .....++.+...-+..++..+
T Consensus 53 ~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~-------~a~~~i~~e~~~a~~~l~~~~ 119 (132)
T PF00430_consen 53 LAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIE-------QAEAEIEQEKEKAKKELRQEI 119 (132)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666555555554442 333344444444444444433
No 34
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=95.00 E-value=0.98 Score=34.95 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQKRISE 63 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~ 63 (110)
++|-.|+++|..|+.+|+.. +...+.+|+.+|...++..+..-+.+......+
T Consensus 64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~ 120 (246)
T TIGR03321 64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDE 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999977664 667788888888888877777777776655543
No 35
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=94.70 E-value=1.3 Score=34.73 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038359 9 GIQMLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQKRISETS 65 (110)
Q Consensus 9 GIQqLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~ 65 (110)
.-++|-.|++++..|+..|+.. +..-+.+|+.+|...++..+..-+.+-+....+..
T Consensus 62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~ 122 (250)
T PRK14474 62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQ 122 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888999999888875 66667777777777777777777766666655443
No 36
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=94.62 E-value=1.5 Score=33.44 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038359 21 QHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDL 100 (110)
Q Consensus 21 ~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~ 100 (110)
...+.+||..-...+..|+.+|+.+.+.-+.+-+.+-.... .....++..+...-+.++......--..++..
T Consensus 111 e~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l-------~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~K 183 (204)
T PRK09174 111 EQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKL-------KEAEARIAAIKAKAMADVGSIAEETAAAIVEQ 183 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333332 34455666666666677777777666666666
Q ss_pred HHHh
Q 038359 101 LIKY 104 (110)
Q Consensus 101 Ll~~ 104 (110)
||..
T Consensus 184 llg~ 187 (204)
T PRK09174 184 LIGG 187 (204)
T ss_pred HhCc
Confidence 6654
No 37
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=94.42 E-value=0.84 Score=33.67 Aligned_cols=62 Identities=11% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 038359 21 QHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDS 89 (110)
Q Consensus 21 ~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~ 89 (110)
.....+||......+.+|+..|.+.++.-+.+-..+-..... ....+++.+...-+.+++..
T Consensus 62 e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~-------~A~~~Ie~Ek~~Al~elr~e 123 (154)
T PRK06568 62 NAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKS-------DAIQLIQNQKSTASKELQDE 123 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333322 22333444444444444443
No 38
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=94.25 E-value=0.81 Score=29.99 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ 58 (110)
Q Consensus 9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk 58 (110)
.=..|-.|..+|..|+..|+.....-..++..+|..|.......-..+..
T Consensus 11 ~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~ 60 (85)
T TIGR02926 11 AEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIE 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999988887777777777766666655544444444
No 39
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=94.04 E-value=1.7 Score=31.76 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSAL 91 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~ 91 (110)
..+-.++...+.+||.....-+.+|+.+|...+++++.+-+.++..... ....+++.+-..-+.+++..+.
T Consensus 57 ~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~-------~a~~~I~~e~~~a~~~l~~~~~ 127 (161)
T COG0711 57 QALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKE-------AAEAEIEAEKERALEELRAEVA 127 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555667777777777777788888888888888888877776654 2233444444444444444444
No 40
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=93.81 E-value=2 Score=31.88 Aligned_cols=48 Identities=27% Similarity=0.245 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
-.|..+|..|+..|+..-.+...++..+|+.|++....+-+..+....
T Consensus 93 ~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k 140 (181)
T PRK13454 93 ADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIR 140 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443333
No 41
>PRK12704 phosphodiesterase; Provisional
Probab=93.63 E-value=2.7 Score=36.34 Aligned_cols=51 Identities=29% Similarity=0.354 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
.+-.|+.+|..|+.+|+..-....++++.+|+.|+..+|.+-+.+|+..+.
T Consensus 32 ~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~ 82 (520)
T PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN 82 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999999998776778999999999999999999888755443
No 42
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=93.36 E-value=2.2 Score=30.79 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 32 MARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 32 ~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
..+|.+|+.+|..-++.-+.+-+.......
T Consensus 80 e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~ 109 (156)
T CHL00118 80 EQELSKARKEAQLEITQSQKEAKEIVENEL 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666555555444
No 43
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=93.16 E-value=2.6 Score=31.11 Aligned_cols=46 Identities=24% Similarity=0.114 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
+.-...|..+|+....+.|.+|+.+|+..++....+-+.+......
T Consensus 5 ~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~ 50 (198)
T PRK03963 5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILR 50 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999999988888877665554
No 44
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=92.72 E-value=2.9 Score=30.53 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~ 60 (110)
+.|-+|..+|+.||+.|+..-..-...++.+|+.|.+.....-+.+...-
T Consensus 65 ~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e 114 (161)
T COG0711 65 QELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAE 114 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999888666666666666666665555554444433
No 45
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=92.71 E-value=2.6 Score=29.90 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038359 18 QEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEV 97 (110)
Q Consensus 18 keA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~V 97 (110)
.++..++.+|+......+.+|+.+|+.+.+....+-..+-..... .....+..+...-+..++..+..--..+
T Consensus 59 ~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~-------~a~~~i~~e~~~a~~~l~~~~~~lA~~~ 131 (156)
T PRK05759 59 AKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA-------QAQAEIEQERKRAREELRKQVADLAVAG 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666555554443 3344555666666666666655555555
Q ss_pred HHHHHHhh
Q 038359 98 TDLLIKYI 105 (110)
Q Consensus 98 v~~Ll~~V 105 (110)
+..+|..-
T Consensus 132 a~k~l~~~ 139 (156)
T PRK05759 132 AEKILGRE 139 (156)
T ss_pred HHHHHHhH
Confidence 55555443
No 46
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=92.62 E-value=4.1 Score=31.96 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038359 8 GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEK 44 (110)
Q Consensus 8 ~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~ 44 (110)
.-+..|++|..+|..|+.+||..-.+.+.+|+.+++.
T Consensus 78 ~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~ 114 (281)
T PRK06669 78 EAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELER 114 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544444444443
No 47
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.57 E-value=5.8 Score=34.26 Aligned_cols=51 Identities=31% Similarity=0.317 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
.|-.|+.+|..|+.+|...=....++++.+|+.|+..+|.+-+.+|+..+.
T Consensus 26 ~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~ 76 (514)
T TIGR03319 26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRN 76 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888888888887766677888889999999999988888755544
No 48
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=92.52 E-value=2.8 Score=29.89 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHH
Q 038359 9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSG----SSESTVKRLEEETEIKIK 84 (110)
Q Consensus 9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g----~~~~~~~~l~~et~~~i~ 84 (110)
.|..-|..=.++..-+..++..-...|.+|+.+|...++..+.+-..+......+... ........++.+...-..
T Consensus 42 ~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~ 121 (141)
T PRK08476 42 SIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKE 121 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555666666677777777777777666666665544433221 122333344445555555
Q ss_pred HHHHHHHHhHHHHHHH
Q 038359 85 QLKDSALKVSKEVTDL 100 (110)
Q Consensus 85 ~i~~~~~~nk~~Vv~~ 100 (110)
.++..+..-.+.++..
T Consensus 122 ~l~~qv~~~~~~~~~~ 137 (141)
T PRK08476 122 QLLSQMPEFKEALNAK 137 (141)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 5555555555554443
No 49
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=92.46 E-value=3.9 Score=31.38 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 038359 7 QGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKS 51 (110)
Q Consensus 7 s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~ 51 (110)
..-||+|++.-+ .+|+.+|+..-...|.+|+.+|..=|++=+.
T Consensus 7 ~~k~q~L~dki~--~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~ 49 (207)
T PRK01005 7 QDKLKQICDALR--EETLKPAEEEAGAIVHNAKEQAKRIIAEAQE 49 (207)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554433 4555555555555555555555444444333
No 50
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=92.20 E-value=3 Score=29.53 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQK 59 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~ 59 (110)
..|-.|..+|..|+..|+.. +...+.+|+.+|+.-++..+..-+.+.+.
T Consensus 63 ~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~ 115 (156)
T PRK05759 63 AQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKR 115 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887775 55555666666666555555555544443
No 51
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=91.86 E-value=3.2 Score=28.98 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT 98 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv 98 (110)
++......||.....-+.+|+.+|.++.+.....-..+-..... .....++.+...-+..++..+..-...++
T Consensus 61 ~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~-------~a~~~i~~e~~~a~~~l~~~v~~la~~~a 133 (140)
T PRK07353 61 QYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKE-------KARREIEQQKQAALAQLEQQVDALSRQIL 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555444444444332 33445555666666666555555444444
Q ss_pred HHHH
Q 038359 99 DLLI 102 (110)
Q Consensus 99 ~~Ll 102 (110)
..||
T Consensus 134 ~kll 137 (140)
T PRK07353 134 EKLL 137 (140)
T ss_pred HHhh
Confidence 4443
No 52
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=91.83 E-value=7.1 Score=32.99 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
..+...++.+|+.....-+.+|+.+|+++.+....+-+.+......
T Consensus 55 ~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~ 100 (445)
T PRK13428 55 DQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKV 100 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666666666666666555543
No 53
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=91.65 E-value=4.8 Score=30.67 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 22 HIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 22 ~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
.-.......-.+.|.+|+.+|..-|+..|.+-+.+.....
T Consensus 101 ~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~ 140 (204)
T PRK09174 101 QEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAER 140 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445666666666666665555555444333
No 54
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=91.29 E-value=4.2 Score=29.31 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038359 21 QHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDL 100 (110)
Q Consensus 21 ~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~ 100 (110)
..++..||......+.+|+.+|+..++....+-..+-..... .....++.+...-+..++..+..---.++..
T Consensus 66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~-------~a~~~i~~ek~~a~~~l~~~i~~la~~~a~k 138 (164)
T PRK14471 66 ERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIE-------QAKASIESEKNAAMAEIKNQVANLSVEIAEK 138 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444444443333333332 2333444555555555444444433333333
Q ss_pred HH
Q 038359 101 LI 102 (110)
Q Consensus 101 Ll 102 (110)
+|
T Consensus 139 il 140 (164)
T PRK14471 139 VL 140 (164)
T ss_pred HH
Confidence 33
No 55
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=91.16 E-value=3.5 Score=28.21 Aligned_cols=51 Identities=27% Similarity=0.336 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNL----KMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~----r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
+.|-.|..+|..|+..|+.. ...-+.+|+.+|..-++..+..-+.+-....
T Consensus 17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~ 71 (103)
T PRK08404 17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKIL 71 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888877775 3444666666666666666665555554443
No 56
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=91.04 E-value=4.8 Score=29.51 Aligned_cols=25 Identities=36% Similarity=0.239 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 35 LKQAKDEAEKEVTLYKSHLETEYQK 59 (110)
Q Consensus 35 LKqAK~eA~~EIe~yr~~kE~efk~ 59 (110)
|.+|+.+|..-|+..+.+-+.....
T Consensus 83 L~~Ar~eA~~Ii~~A~~eAe~~~~~ 107 (167)
T PRK08475 83 LEEAKEKAELIVETAKKEAYILTQK 107 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 57
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=90.96 E-value=4.6 Score=29.13 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038359 32 MARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGS----SESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLI 102 (110)
Q Consensus 32 ~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~----~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll 102 (110)
..+|.+|+.+|..-|+..+.+-+..+.....+.... .......++.+...-+..++.....---.+...+|
T Consensus 66 e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil 140 (164)
T PRK14473 66 EAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVL 140 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555554444444333221111 12233445555555555555544444444443333
No 58
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=90.91 E-value=5.1 Score=29.54 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ 58 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk 58 (110)
.|-.|..+|+.|+.+|+....+-..+++.+|..|++....+-..+..
T Consensus 64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie 110 (154)
T PRK06568 64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQ 110 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777777777666665444444
No 59
>PRK00106 hypothetical protein; Provisional
Probab=90.56 E-value=9.3 Score=33.44 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQK 59 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~ 59 (110)
|-.|+.+|..|+.+|...-....++++.+|+.|+..+|.+-+.+|+.
T Consensus 48 leeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~e 94 (535)
T PRK00106 48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKS 94 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999998777778999999999999999999888743
No 60
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=90.48 E-value=4.9 Score=28.67 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKE 45 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~E 45 (110)
....+...++..||..-...+..|..+|..|
T Consensus 59 ~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~e 89 (141)
T PRK08476 59 EIEHEIETILKNAREEANKIRQKAIAKAKEE 89 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555433333333333333
No 61
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=90.23 E-value=5.7 Score=29.03 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 038359 18 QEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEV 97 (110)
Q Consensus 18 keA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~V 97 (110)
.++...+.+|+......+..|+.+|+.+.+....+-..+-..... .....++.+...-+..++..+..---.+
T Consensus 71 ~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~-------~a~~~ie~e~~~a~~el~~ei~~lA~~~ 143 (173)
T PRK13460 71 KDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKD-------QAVKEIELAKGKALSQLQNQIVEMTITI 143 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777777777766666666655543 3344556666666666665555544444
Q ss_pred HHHHHHh
Q 038359 98 TDLLIKY 104 (110)
Q Consensus 98 v~~Ll~~ 104 (110)
...+|..
T Consensus 144 a~kil~~ 150 (173)
T PRK13460 144 ASKVLEK 150 (173)
T ss_pred HHHHHHH
Confidence 4444443
No 62
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=90.06 E-value=6.1 Score=29.15 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 18 QEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 18 keA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
.++..++..||......+..|+.+|+.+.+....+-..+-....
T Consensus 79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~ 122 (184)
T CHL00019 79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLE 122 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666665555554444444333
No 63
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=89.71 E-value=6.5 Score=28.95 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038359 20 AQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTD 99 (110)
Q Consensus 20 A~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~ 99 (110)
+...+..||......+.+|+.+|+.+.+..+.+-+.+-.... ......++.+...-+..++..+..---.++.
T Consensus 84 ~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~-------~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~ 156 (184)
T PRK13455 84 YERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRL-------AAAEDQIASAEAAAVKAVRDRAVSVAVAAAA 156 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555554444444433322 2333444555555555554444443333333
Q ss_pred HH
Q 038359 100 LL 101 (110)
Q Consensus 100 ~L 101 (110)
.+
T Consensus 157 ki 158 (184)
T PRK13455 157 DV 158 (184)
T ss_pred HH
Confidence 33
No 64
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=89.51 E-value=7.4 Score=29.28 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAE 43 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~ 43 (110)
|-+|+++|.+||.+|++.-.+-++.|+.+|.
T Consensus 28 i~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 28 ILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888888888886655555444444
No 65
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=89.17 E-value=5.3 Score=27.13 Aligned_cols=87 Identities=22% Similarity=0.199 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 038359 8 GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLK 87 (110)
Q Consensus 8 ~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~ 87 (110)
+.|+..+.-=.....-+......=..+|.+|+.+|..-++..+.+-+........+ .+.+....+..-.
T Consensus 33 ~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~e-----------a~~~~~~~~~~a~ 101 (132)
T PF00430_consen 33 AKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAE-----------AEKEAERIIEQAE 101 (132)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 44544443333333334445555567788999999999988888888888766542 3333444444444
Q ss_pred HHHHHhHHHHHHHHHHhh
Q 038359 88 DSALKVSKEVTDLLIKYI 105 (110)
Q Consensus 88 ~~~~~nk~~Vv~~Ll~~V 105 (110)
.....-+..+...|-..+
T Consensus 102 ~~i~~e~~~a~~~l~~~~ 119 (132)
T PF00430_consen 102 AEIEQEKEKAKKELRQEI 119 (132)
T ss_dssp HHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 66
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=89.12 E-value=7.2 Score=28.62 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI-SETSGSSESTVKRLEEETEIKIKQLKDS 89 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~-~~~~g~~~~~~~~l~~et~~~i~~i~~~ 89 (110)
|=+|+++|..|+++|++.=.+-..++..+|.++...+.......-.... ...+.-.......+=.++..+|..+-..
T Consensus 22 ~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~ 99 (188)
T PRK02292 22 RAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3468889999999998887777777888888888777665444433222 2244455566666777777777766653
No 67
>PRK09098 type III secretion system protein HrpB; Validated
Probab=88.77 E-value=9.6 Score=29.62 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ 58 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk 58 (110)
+..+|+++||..=.+-|-+|+.+|+.=++..+.+.|..|+
T Consensus 40 ~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~ 79 (233)
T PRK09098 40 ERDAVLAAARARAERIVAEARAQAEAILEAARREADRSAR 79 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777776677777777777777766666666555
No 68
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=88.47 E-value=6.8 Score=27.50 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT 98 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv 98 (110)
++..++.+||..-...+.+|+.+|....+....+-+.+-.... ......++.+...-+..++.....---.++
T Consensus 51 e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~-------~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a 123 (147)
T TIGR01144 51 KAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIK-------AQARAEIEAEKEQAREELRKQVADLSVLGA 123 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544444444443333 234445566666666666666666555555
Q ss_pred HHHHHhhc
Q 038359 99 DLLIKYIT 106 (110)
Q Consensus 99 ~~Ll~~V~ 106 (110)
..||..-+
T Consensus 124 ~kll~~~l 131 (147)
T TIGR01144 124 EKIIERNI 131 (147)
T ss_pred HHHHHHHc
Confidence 55555433
No 69
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=87.74 E-value=8.7 Score=27.93 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT 98 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv 98 (110)
++...++.||.....-+.+|+.+|+.+++.-+.+-+.+..... ......++.+...-+.+++..+..---.++
T Consensus 66 ~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~-------~~A~~~I~~e~~~a~~el~~e~~~lAv~~A 138 (167)
T PRK14475 66 DVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRA-------EMAERKIAQAEAQAAADVKAAAVDLAAQAA 138 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555554444444433333333 234455666666666666665555554444
Q ss_pred HHHHH
Q 038359 99 DLLIK 103 (110)
Q Consensus 99 ~~Ll~ 103 (110)
..+|.
T Consensus 139 ~kil~ 143 (167)
T PRK14475 139 ETVLA 143 (167)
T ss_pred HHHHH
Confidence 44443
No 70
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=86.87 E-value=10 Score=27.77 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
....++..++.+||......+.+|+.+|+.+.+..-.+-..+.....
T Consensus 74 ~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~ 120 (167)
T PRK08475 74 EKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI 120 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777778888888888888888888877776666666665544
No 71
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=86.53 E-value=11 Score=27.68 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=35.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 038359 33 ARLKQAKDEAEKEVTLYKSHLETEYQKRISETS----GSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDLLIKY 104 (110)
Q Consensus 33 ~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~----g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
++|.+|+.+|..-++..+.+-+........+.. .-.......++.+...-+..++..+..---.++..+|..
T Consensus 77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~ 152 (173)
T PRK13453 77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRK 152 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335555555555555555544444443332211 111234455666666666666666655555555555543
No 72
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=86.33 E-value=11 Score=27.55 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 038359 20 AQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTD 99 (110)
Q Consensus 20 A~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~ 99 (110)
+...+..||.....-+..|+.+|+.+.+....+-..+-..... .....++.+...-+..++..+..---.++.
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~-------~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~ 147 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIA-------SAKEEIEQEKRRALDVLRNEVADLAVKGAE 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555544444444443332 333445555555555555544444444444
Q ss_pred HHH
Q 038359 100 LLI 102 (110)
Q Consensus 100 ~Ll 102 (110)
.+|
T Consensus 148 kil 150 (175)
T PRK14472 148 KII 150 (175)
T ss_pred HHH
Confidence 443
No 73
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=85.57 E-value=13 Score=31.43 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEV 46 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EI 46 (110)
..+||..|.+|+..||....+.+-+|.-.++..|
T Consensus 265 i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i 298 (419)
T PRK10930 265 IREAEAYTNEVQPRANGQAQRILEEARAYKAQTI 298 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665555555544444433
No 74
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=85.55 E-value=11 Score=26.96 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 038359 21 QHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVTDL 100 (110)
Q Consensus 21 ~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv~~ 100 (110)
...+..||..-..-+.+|+.+|+..++.-+.+-+.+..... .....+++.+...-+.+++..+..---.++..
T Consensus 60 e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~-------~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~k 132 (159)
T PRK09173 60 QRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRN-------KLAEQKIAQAETDAINAVRSSAVDLAIAAAEK 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333322 22444566666666666666655555555544
Q ss_pred HHHh
Q 038359 101 LIKY 104 (110)
Q Consensus 101 Ll~~ 104 (110)
+|..
T Consensus 133 il~~ 136 (159)
T PRK09173 133 LLAE 136 (159)
T ss_pred HHHh
Confidence 4443
No 75
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=85.51 E-value=13 Score=27.60 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKEVT 98 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~Vv 98 (110)
+....+.+||..-.+-..+|+..+..|.+.=+..-|++++ .--...|+.|...+.+-+....
T Consensus 66 ~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~------------------~~~~~~~~~~~~~~~~~~~~~~ 127 (155)
T PRK06569 66 YYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK------------------NSINQNIEDINLAAKQFRTNKS 127 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444444444444444444444444444444444444 3334445555555555555666
Q ss_pred HHHHHhhccc
Q 038359 99 DLLIKYITTI 108 (110)
Q Consensus 99 ~~Ll~~V~~V 108 (110)
+-|++..|+|
T Consensus 128 ~~~i~~~~~i 137 (155)
T PRK06569 128 EAIIKLAVNI 137 (155)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 76
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=84.63 E-value=13 Score=27.06 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 20 AQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60 (110)
Q Consensus 20 A~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~ 60 (110)
+...+..||......+.+|+.+|+.+.+....+-+.+-...
T Consensus 76 ~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~ 116 (174)
T PRK07352 76 AQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARL 116 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444444444433
No 77
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.50 E-value=24 Score=30.56 Aligned_cols=50 Identities=24% Similarity=0.158 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038359 16 AEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETS 65 (110)
Q Consensus 16 AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~ 65 (110)
+.+.|..++..|+..-..-+++|..+|+.++..++.+-+.++.....+..
T Consensus 19 ak~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele 68 (514)
T TIGR03319 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELE 68 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999998888888999999999999999999999888776654
No 78
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=84.33 E-value=16 Score=27.74 Aligned_cols=28 Identities=11% Similarity=-0.060 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 34 RLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 34 rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
+|.+|+.+|..-++..+.+-+.......
T Consensus 108 ~L~~A~~eA~~Ii~~A~~eAe~~~e~i~ 135 (205)
T PRK06231 108 RHENALAQAKEIIDQANYEALQLKSELE 135 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555554444333
No 79
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=83.83 E-value=11 Score=25.33 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISET 64 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~ 64 (110)
=+|.+....++.+||..-...+...+.+++.+...|..+-+..........
T Consensus 21 ~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l 71 (105)
T PF03179_consen 21 EEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEEL 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 356667777777777777777777777777777776666665555544433
No 80
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=83.13 E-value=21 Score=28.13 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRL 75 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l 75 (110)
|=.|-..|.+||..|-.++..-|.||..+|.+=+.+-+.+.|.+.-.---...-..+.....|
T Consensus 47 l~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~~~~~~~E~~~L~qHV~wLve~e~lE~sL 109 (224)
T PRK15354 47 VSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEVEWLEQHVKHLQEDENQFRSL 109 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445678899999999999999999999999999999999999988754433433333433333
No 81
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=83.00 E-value=20 Score=27.97 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSAL 91 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~ 91 (110)
++...+..|+..+...+.+|+.+|+.+.+....+-..+...... .....++.+...-+..++..+.
T Consensus 61 e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~-------~a~~~ie~Ek~~a~~~L~~~v~ 126 (250)
T PRK14474 61 RYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARD-------EWLEQLEREKQEFFKALQQQTG 126 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677777777777766665555554444444432 2333444444444444444433
No 82
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=82.97 E-value=19 Score=27.72 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~ 60 (110)
++...+.+|+......+.+|+.+|+.+.+....+-..+....
T Consensus 61 e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~ 102 (246)
T TIGR03321 61 EYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEI 102 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666655555544444444433
No 83
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=81.91 E-value=23 Score=27.76 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~ 60 (110)
.+-.+..+|..++.+|+..-..-|-.|+.+++..+..++.+.+.-+..-
T Consensus 71 ~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a 119 (281)
T PRK06669 71 IVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEA 119 (281)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445578899999999999999999999999999999998888877743
No 84
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=81.90 E-value=15 Score=25.84 Aligned_cols=27 Identities=41% Similarity=0.463 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKE 45 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~E 45 (110)
+|..|+++||..-.+-+.+|..+++..
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~ 40 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEAS 40 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999888888888877653
No 85
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=81.64 E-value=17 Score=26.03 Aligned_cols=32 Identities=38% Similarity=0.495 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 31 KMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 31 r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
-..+|.+|+.+|..-|+..+.+-+........
T Consensus 62 ~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~ 93 (159)
T PRK13461 62 NERELKNAKEEGKKIVEEYKSKAENVYEEIVK 93 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666666666666666655555554443
No 86
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=80.92 E-value=16 Score=25.36 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 28 RNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISE 63 (110)
Q Consensus 28 R~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~ 63 (110)
...-..+|.+|+.+|..-++..+.+-+.+.....+.
T Consensus 59 ~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~ 94 (140)
T PRK07353 59 EAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445688888888888888888888887766653
No 87
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=80.86 E-value=22 Score=26.97 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
.|+.+|..|..+|+..-.+...+|+.+|+.-++.+....+.+-....
T Consensus 14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~ 60 (194)
T COG1390 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERER 60 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888877777777777777777777766666655443
No 88
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=80.44 E-value=19 Score=25.94 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSH 52 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~ 52 (110)
+|..++..|+.+|...-..++......+.++++..+..
T Consensus 16 eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (198)
T PF01991_consen 16 EAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKER 53 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444444444444444444443
No 89
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=79.50 E-value=27 Score=27.09 Aligned_cols=51 Identities=22% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEV-------TLYKSHLETEYQKRIS 62 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EI-------e~yr~~kE~efk~~~~ 62 (110)
.+..+..+...+++.||..=..-+.+|+.+|+.-. +.++.+.+.-+..-..
T Consensus 34 ~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~ 91 (255)
T TIGR03825 34 ELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQ 91 (255)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566688899999999999999999999888653 5556666666664443
No 90
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=75.98 E-value=30 Score=26.44 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 038359 9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHL 53 (110)
Q Consensus 9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~k 53 (110)
-|..-+.|++++...+.+|..++...+..|+.+|++-+..=...+
T Consensus 154 a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 154 AFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777888888888888877778777776554433333
No 91
>PRK06937 type III secretion system protein; Reviewed
Probab=75.87 E-value=31 Score=25.82 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 038359 19 EAQHIVSSARNLKMARLKQAKD 40 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~ 40 (110)
+|.+|++.||..-..-+.+|+.
T Consensus 31 ~A~~il~~A~~~A~~i~~~A~~ 52 (204)
T PRK06937 31 SAEELVEAARQRAEEIEAEAQE 52 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777766555555543
No 92
>PRK12705 hypothetical protein; Provisional
Probab=75.20 E-value=56 Score=28.51 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038359 19 EAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISET 64 (110)
Q Consensus 19 eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~ 64 (110)
.|.+|+.+|++.-....+++-.+|..|+..+|.+.|.+++....+.
T Consensus 34 ~a~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 34 EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999998877777799999999999999999999988765543
No 93
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=74.95 E-value=10 Score=32.08 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 038359 10 IQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEV 46 (110)
Q Consensus 10 IQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EI 46 (110)
+..-+.|+.+-...+.+|..|+.+-+-.|+-+|+.=|
T Consensus 251 f~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii 287 (419)
T PRK10930 251 FDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRIL 287 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666666666666655555
No 94
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=73.70 E-value=38 Score=25.88 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 038359 8 GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEY 57 (110)
Q Consensus 8 ~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~ef 57 (110)
+-|..-+.|++++.....+|..++.+.+.+|+.+|++-+-.-.+.++...
T Consensus 180 ~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~ 229 (266)
T cd03404 180 DAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVI 229 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHH
Confidence 45777888999999999999999888988999888887766666555543
No 95
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=71.16 E-value=89 Score=29.53 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Q 038359 9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKD 88 (110)
Q Consensus 9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~ 88 (110)
-||.|+++|..+.+-= .+.+|--.++..|+.|.+.-|...|++-+.-+..-.--.-...+.|.++++.+.+.-+.
T Consensus 928 k~qE~~E~ER~rrEae-----ek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~ 1002 (1259)
T KOG0163|consen 928 KIQELAEAERKRREAE-----EKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQ 1002 (1259)
T ss_pred HHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4666666665443321 23344455666677777666665555544333222222223444666666665555444
Q ss_pred HHHHhHHHHHH
Q 038359 89 SALKVSKEVTD 99 (110)
Q Consensus 89 ~~~~nk~~Vv~ 99 (110)
.-....|.-+.
T Consensus 1003 ~Eqer~D~~la 1013 (1259)
T KOG0163|consen 1003 LEQERRDHELA 1013 (1259)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 96
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=71.09 E-value=40 Score=24.97 Aligned_cols=41 Identities=27% Similarity=0.228 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 038359 44 KEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIK 84 (110)
Q Consensus 44 ~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~ 84 (110)
.|.+..+...|++...-..+...-.....+++..+...+..
T Consensus 58 ~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~ 98 (155)
T PRK06569 58 IEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKK 98 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333323333334444443333
No 97
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=69.91 E-value=27 Score=26.65 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTL 48 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~ 48 (110)
+...+||.+|..++..|+....+.+-+|+-+|+..+..
T Consensus 167 ~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~ 204 (261)
T TIGR01933 167 RYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINR 204 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776666666555554444
No 98
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=69.84 E-value=36 Score=23.95 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~ 68 (110)
+..=+|..++..||.+||..=..-+-+|-.+|+..-..|=...+.+-...-.+..+..
T Consensus 21 ~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~a 78 (108)
T COG2811 21 EEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677777788888877777777777777777777766666666655554444443
No 99
>PRK06328 type III secretion system protein; Validated
Probab=68.54 E-value=52 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 038359 18 QEAQHIVSSARNLKMARLKQAKDEAEKEVT 47 (110)
Q Consensus 18 keA~~iV~~AR~~r~~rLKqAK~eA~~EIe 47 (110)
-+|+.|+..||..-.+-+.+|..+++.-.+
T Consensus 29 ~~A~~il~~a~~~ae~i~~ea~~e~E~i~e 58 (223)
T PRK06328 29 LDAQELLEKTKEDSEAYTQETHEECEKLRE 58 (223)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999988877777777777666444
No 100
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=66.82 E-value=55 Score=24.98 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 038359 16 AEQEAQHIVSSARNLKMARLKQAKD 40 (110)
Q Consensus 16 AEkeA~~iV~~AR~~r~~rLKqAK~ 40 (110)
||.+|..++.+|+....+..-+|+.
T Consensus 199 ae~~a~~~~~~A~~ea~~~~~~A~a 223 (266)
T cd03404 199 AEAYANEVVPKARGEAARIIQEAEA 223 (266)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 3334444444444443333333333
No 101
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=63.64 E-value=42 Score=25.86 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 038359 8 GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTL 48 (110)
Q Consensus 8 ~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~ 48 (110)
+-|..-..|+.+....+.+|..+|...+..|+-+|++.+..
T Consensus 147 ~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~ 187 (262)
T cd03407 147 RAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQ 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 45666778888888889999999999999998888877765
No 102
>PRK09098 type III secretion system protein HrpB; Validated
Probab=62.53 E-value=71 Score=24.77 Aligned_cols=33 Identities=36% Similarity=0.451 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEK 44 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~ 44 (110)
-|=.|..+|++||.+||..-..-+-+|+.+++.
T Consensus 44 ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~ 76 (233)
T PRK09098 44 VLAAARARAERIVAEARAQAEAILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999988888888888765
No 103
>PRK12704 phosphodiesterase; Provisional
Probab=61.13 E-value=1.1e+02 Score=26.54 Aligned_cols=48 Identities=23% Similarity=0.097 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038359 18 QEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETS 65 (110)
Q Consensus 18 keA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~ 65 (110)
..|..++..|+..-..-+++|..+|+.++...+.+-+.++.....+..
T Consensus 27 ~~a~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele 74 (520)
T PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE 74 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677777777766677788888888887777777777776665443
No 104
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=61.11 E-value=68 Score=24.06 Aligned_cols=36 Identities=33% Similarity=0.370 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVT 47 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe 47 (110)
-|=.|..+|..|+.+|+.....-+.+|.++|..++-
T Consensus 35 IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~ 70 (191)
T PF06188_consen 35 ILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFW 70 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999999999988888866653
No 105
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=59.25 E-value=67 Score=23.40 Aligned_cols=51 Identities=24% Similarity=0.216 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 8 GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKR 60 (110)
Q Consensus 8 ~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~ 60 (110)
.+|+.|+.-|.+... +......-+..++-+++=-.++..-+..-+.+|++.
T Consensus 80 ~~~~~l~~~e~~~~~--~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~ 130 (145)
T PF14942_consen 80 SMCSRLQQKEQEKQK--DDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREK 130 (145)
T ss_pred HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554 222222223333444444444444444444444433
No 106
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=57.88 E-value=81 Score=23.91 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
+.+|+-.+.|..+|+..--.-+..|+.+|++..+.-+..-+..+....
T Consensus 2 ~~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~ 49 (194)
T COG1390 2 MELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEIL 49 (194)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888886665555556666666666655555555444333
No 107
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=57.74 E-value=63 Score=22.64 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMA 33 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~ 33 (110)
|-.|..+|..|+.+|+.....
T Consensus 19 l~~A~~~a~~i~~~A~~~~e~ 39 (166)
T TIGR02499 19 LAAARQRAEAILADAEEEAEA 39 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999886433
No 108
>PF01468 GA: GA module; InterPro: IPR002988 Protein G-related albumin-binding (GA) modules occur on the surface of numerous Gram-positive bacterial pathogens. Protein G of group C and G Streptococci interacts with the constant region of IgG and with human serum albumin. The GA module is composed of a left-handed three-helix bundle and is found in a range of bacterial cell surface proteins [, ]. GA modules may promote bacterial growth and virulence in mammalian hosts by scavenging albumin-bound nutrients and camouflaging the bacteria. Variations in sequence give rise to differences in structure and function between GA modules in different proteins, which could alter pathogenesis and host specificity due to their varied affinities for different species of albumin []. Proteins containing a GA module include PAB from Peptostreptococcus magnus [].; GO: 0009405 pathogenesis; PDB: 2DGJ_B 1GJS_A 1GJT_A 2FS1_A 1GAB_A 2J5Y_B 1PRB_A 1TF0_B 2VDB_B 1XVH_B ....
Probab=55.64 E-value=30 Score=21.17 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=20.8
Q ss_pred HHHHHH--HHHHhHHHHHHHHHHHHHHH
Q 038359 25 SSARNL--KMARLKQAKDEAEKEVTLYK 50 (110)
Q Consensus 25 ~~AR~~--r~~rLKqAK~eA~~EIe~yr 50 (110)
..|... -..+|..||..|..+|+.+-
T Consensus 2 ~~ak~~Lng~~~L~~aK~~A~~~I~~L~ 29 (60)
T PF01468_consen 2 NQAKNALNGDQKLANAKQNAKQEINQLT 29 (60)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHCCT
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344443 56899999999999999876
No 109
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=49.38 E-value=90 Score=21.92 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 22 HIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 22 ~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
+-++.-.+....-+|.|+..-+-++..+-.+-...|+.+.
T Consensus 24 kEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l 63 (111)
T PRK06397 24 KEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAAL 63 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444444555555555555555444444554444
No 110
>PRK15322 invasion protein OrgB; Provisional
Probab=45.94 E-value=1.4e+02 Score=23.29 Aligned_cols=79 Identities=20% Similarity=0.164 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKV 93 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~n 93 (110)
|.+=+-|..++.+|++.=..-+++|..||+. .|..- |. -|..+-...+-.+...=+.+.+....++
T Consensus 8 l~~~~~a~~l~~qA~~kA~~ii~qA~~eaE~----ir~~A---~~-------~GYq~Gl~qa~~~la~~~a~~~~l~~~l 73 (210)
T PRK15322 8 LERYFSAERLEQQARRRAKRILRQAEEEAET----LRMYA---YQ-------EGYEQGMIDALQQVAAYLTDNQTMAWKW 73 (210)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777888888888877777777766653 22211 11 1223334445555555666666666677
Q ss_pred HHHHHH---HHHHhhc
Q 038359 94 SKEVTD---LLIKYIT 106 (110)
Q Consensus 94 k~~Vv~---~Ll~~V~ 106 (110)
.+.|++ .|++..+
T Consensus 74 ~~~ie~~~r~lls~~L 89 (210)
T PRK15322 74 MEKIQIYARELFSAAV 89 (210)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 777777 5555444
No 111
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=45.83 E-value=1.4e+02 Score=23.21 Aligned_cols=54 Identities=30% Similarity=0.315 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 038359 8 GGIQMLLNAEQEAQHIVSSARNL-------------KMARLKQAKD--EAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 8 ~GIQqLL~AEkeA~~iV~~AR~~-------------r~~rLKqAK~--eA~~EIe~yr~~kE~efk~~~ 61 (110)
+|.+-|-.|+.+|+.|...||.. +.-.-..|.. ++..+++.|...-|.+.-...
T Consensus 31 da~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~llaqa~a~v~r~~a~LE~~l~~LV 99 (207)
T PF06635_consen 31 DAAAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAEQAARLLAQATAEVARYLAGLEQELAELV 99 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999885 2223444444 555677778777777776554
No 112
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=44.14 E-value=1.3e+02 Score=22.31 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 038359 17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSALKVSKE 96 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~~nk~~ 96 (110)
|+=-.+|-.+|+.....-+.+|+.+|..=+..-+..-+.....+.............++-. ..+| +.+...-.-++.
T Consensus 4 e~i~~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis--~A~L-e~R~~~L~aree 80 (185)
T PRK01194 4 EDVIKDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIID--KANI-EARSIKREKRRE 80 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhH-HHHHHHHHHHHH
Confidence 3444678888998888888888888888777777777777766665333222222222211 1111 233444555666
Q ss_pred HHHHHHHhh
Q 038359 97 VTDLLIKYI 105 (110)
Q Consensus 97 Vv~~Ll~~V 105 (110)
|++.++..+
T Consensus 81 ~I~~v~~~a 89 (185)
T PRK01194 81 ILKDYLDIA 89 (185)
T ss_pred HHHHHHHHH
Confidence 666666554
No 113
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=42.63 E-value=8.2 Score=26.31 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVT 47 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe 47 (110)
.|..|++.|.+++..|...-...+..|+.+|..=|+
T Consensus 68 ~l~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~ 103 (131)
T PF05103_consen 68 ALIQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIE 103 (131)
T ss_dssp ------------------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666655666666655554433
No 114
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=37.57 E-value=92 Score=23.22 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.4
Q ss_pred HHHHHH
Q 038359 96 EVTDLL 101 (110)
Q Consensus 96 ~Vv~~L 101 (110)
.++.++
T Consensus 227 ~~~~~~ 232 (242)
T cd03405 227 EFYAFY 232 (242)
T ss_pred HHHHHH
Confidence 444433
No 115
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=32.22 E-value=1.3e+02 Score=21.60 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHH
Q 038359 35 LKQAKDEAEKEVTL 48 (110)
Q Consensus 35 LKqAK~eA~~EIe~ 48 (110)
+.+|+.||++.+..
T Consensus 175 ~~~a~~ea~~~~~~ 188 (196)
T cd03401 175 VEKAEQEKQAAVIR 188 (196)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 116
>PF12750 Maff2: Maff2 family; InterPro: IPR024272 This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein family may contain transmembrane helices.
Probab=31.27 E-value=23 Score=22.99 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=9.1
Q ss_pred ccchHHHHHHH
Q 038359 5 RGQGGIQMLLN 15 (110)
Q Consensus 5 ~~s~GIQqLL~ 15 (110)
.+||||.||+.
T Consensus 41 aksqgiKQlma 51 (70)
T PF12750_consen 41 AKSQGIKQLMA 51 (70)
T ss_pred hhhhhHHHHHc
Confidence 36899999984
No 117
>PRK10428 hypothetical protein; Provisional
Probab=30.07 E-value=1.5e+02 Score=18.87 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSH 52 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~ 52 (110)
++++|=.+..++-.+.+. .-.+|++|..+|+.|...
T Consensus 29 ~~~~eG~~dql~GkiQe~----~G~~Kd~a~~~~~~~~~~ 64 (69)
T PRK10428 29 MTVIEGKRDQLVGKIQER----YGYQKDQAEKEVVDWETR 64 (69)
T ss_pred HHHHcCcHHHHHHHHHHH----HhHHHHHHHHHHHHHHHh
Confidence 566666666777666554 778999999999998754
No 118
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=29.44 E-value=1.5e+02 Score=22.71 Aligned_cols=33 Identities=24% Similarity=0.146 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEK 44 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~ 44 (110)
..+.||......+..|+.++.+.+-+|+-+|+.
T Consensus 162 ~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a 194 (262)
T cd03407 162 AVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQ 194 (262)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344555555556666666665555555544443
No 119
>PRK15322 invasion protein OrgB; Provisional
Probab=27.75 E-value=3e+02 Score=21.55 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHH
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKD--------EAEKEVTLYKSHLET 55 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~--------eA~~EIe~yr~~kE~ 55 (110)
=+|.+.|.+|+.+|...-..-=..|.. .|..+++.|.+.-+.
T Consensus 19 ~qA~~kA~~ii~qA~~eaE~ir~~A~~~GYq~Gl~qa~~~la~~~a~~~~ 68 (210)
T PRK15322 19 QQARRRAKRILRQAEEEAETLRMYAYQEGYEQGMIDALQQVAAYLTDNQT 68 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999998875555455543 366777777766544
No 120
>PRK11677 hypothetical protein; Provisional
Probab=26.25 E-value=2.5e+02 Score=20.20 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=25.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 30 LKMARLKQAKDEAEKEVTLYKSHLETEYQ 58 (110)
Q Consensus 30 ~r~~rLKqAK~eA~~EIe~yr~~kE~efk 58 (110)
.+.+.|..--+.++.|+++||.+-...|-
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa 57 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFA 57 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889999999999999998887
No 121
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=25.81 E-value=1.7e+02 Score=22.53 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038359 35 LKQAKDEAEKEVTLYKSHLETEYQKRISETS 65 (110)
Q Consensus 35 LKqAK~eA~~EIe~yr~~kE~efk~~~~~~~ 65 (110)
..+-+.+|+++|+.|..+++....+....+.
T Consensus 136 k~e~~~~A~k~lddfY~~~~~k~e~~k~~nr 166 (225)
T PF01086_consen 136 KEEIKEKAKKELDDFYENRNEKKEKNKKQNR 166 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788899999999888887776665443
No 122
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=25.58 E-value=3.5e+02 Score=21.60 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSS 68 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~ 68 (110)
++|.+|+.|.++|+..+.+-+-+| .++-...+++=|.++-+..+...+.+
T Consensus 231 ege~~a~~i~a~A~~e~~~~~aeA----~a~a~~~~Aegea~a~~~~~~a~~~~ 280 (317)
T TIGR01932 231 QGEEKAEEILGKAEYEVRKILSEA----YRTARIIKGEGDAEAAKIYSDAYGKD 280 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHccC
Confidence 344455566666666555544433 33334455666666555554444433
No 123
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.03 E-value=1.8e+02 Score=17.72 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 038359 73 KRLEEETEIKIKQLKDSALKVSKEVTDLL 101 (110)
Q Consensus 73 ~~l~~et~~~i~~i~~~~~~nk~~Vv~~L 101 (110)
..|+.+-+.+|.+++..|..++.=++|-+
T Consensus 18 ~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 18 ASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 46888999999999999999998887754
No 124
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.03 E-value=5.6e+02 Score=23.42 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=19.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 28 RNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 28 R~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
++.|.+.+.+|+.+|...|...|.+-+.-+++..
T Consensus 561 ~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 561 QEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666665555555544
No 125
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.42 E-value=2.7e+02 Score=19.25 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 39 KDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 39 K~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
....+.+++....+-+...+.+..
T Consensus 45 ~~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 45 FKALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 126
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=22.03 E-value=1.7e+02 Score=23.46 Aligned_cols=41 Identities=20% Similarity=0.084 Sum_probs=25.2
Q ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 038359 8 GGIQMLLNAEQ--EAQHIVSSARNLKMARLKQAKDEAEKEVTL 48 (110)
Q Consensus 8 ~GIQqLL~AEk--eA~~iV~~AR~~r~~rLKqAK~eA~~EIe~ 48 (110)
+.|..=+.||+ .|...-++|..+.....-+|+-+|.+-+.+
T Consensus 211 ~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~ae 253 (317)
T TIGR01932 211 ESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSE 253 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556665 445666677777666666777666666653
No 127
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.79 E-value=1.7e+02 Score=18.71 Aligned_cols=33 Identities=12% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 038359 73 KRLEEETEIKIKQLKDSALKVSKEVTDLLIKYI 105 (110)
Q Consensus 73 ~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~V 105 (110)
++|+.+..-.|++|...++..-..|-+.+|=.|
T Consensus 2 E~ldQ~iTl~LQeID~N~s~~~~iit~~IlP~v 34 (66)
T PF08655_consen 2 EQLDQEITLLLQEIDSNFSRCHRIITDKILPAV 34 (66)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 478899999999999999999888887766443
No 128
>PF00938 Lipoprotein_3: Lipoprotein This Pfam family is a subset of the Prosite family.; InterPro: IPR001595 This family of lipoproteins is Mycoplasma specific, and includes a variety of hypothetical proteins []. They all have a prokaryotic membrane lipoprotein lipid attachment site which is probable acts as a membrane anchor.
Probab=21.33 E-value=1.1e+02 Score=20.68 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 038359 78 ETEIKIKQLKDSALKVSKEVTDLLIKY 104 (110)
Q Consensus 78 et~~~i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
.-..-|..++..|..|.+..++.||+.
T Consensus 27 ~KknlItsLKksYe~np~~Tt~~LL~a 53 (87)
T PF00938_consen 27 GKKNLITSLKKSYEVNPKKTTNLLLDA 53 (87)
T ss_pred hHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 345568899999999999999999975
No 129
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=20.67 E-value=3.4e+02 Score=19.66 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 038359 8 GGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEV 46 (110)
Q Consensus 8 ~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EI 46 (110)
..|..-+.||.++...+..|+..+......|..+++.++
T Consensus 148 ~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~ 186 (215)
T cd03403 148 EAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAAI 186 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 345666778888777777777777666666665555444
Done!