Query 038359
Match_columns 110
No_of_seqs 104 out of 264
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_G V-type proton ATPase su 100.0 1.5E-42 5.3E-47 244.7 10.7 107 4-110 6-112 (119)
2 3v6i_A V-type ATP synthase sub 96.6 0.021 7.2E-07 41.1 9.9 89 15-104 10-110 (187)
3 2k6i_A Uncharacterized protein 96.6 0.0049 1.7E-07 37.8 5.1 36 9-44 17-52 (56)
4 1l2p_A ATP synthase B chain; a 95.8 0.13 4.5E-06 30.6 9.0 48 11-58 2-49 (61)
5 3v6i_B V-type ATP synthase, su 94.9 0.55 1.9E-05 31.9 14.1 90 6-106 4-104 (105)
6 4efa_E V-type proton ATPase su 94.2 1.1 3.8E-05 33.0 11.8 92 14-105 26-129 (233)
7 2kk7_A V-type ATP synthase sub 93.1 0.18 6.3E-06 29.9 4.6 38 8-45 6-48 (52)
8 2dm9_A V-type ATP synthase sub 90.9 0.2 6.9E-06 35.1 3.5 46 14-59 13-58 (198)
9 2dm9_A V-type ATP synthase sub 77.8 0.5 1.7E-05 33.0 0.2 18 13-30 23-40 (198)
10 2kk7_A V-type ATP synthase sub 77.0 8.7 0.0003 22.4 7.0 39 17-55 9-47 (52)
11 1l2p_A ATP synthase B chain; a 74.0 11 0.00036 22.0 9.5 39 23-61 3-41 (61)
12 3v6i_B V-type ATP synthase, su 70.3 22 0.00074 24.0 10.5 15 34-48 21-35 (105)
13 1use_A VAsp, vasodilator-stimu 39.3 54 0.0019 18.8 4.6 35 73-107 7-41 (45)
14 3v6i_A V-type ATP synthase sub 38.1 99 0.0034 21.4 12.8 40 23-62 7-46 (187)
15 4efa_E V-type proton ATPase su 33.2 1.3E+02 0.0046 21.5 14.2 39 17-55 18-56 (233)
16 3lvg_D LCB, clathrin light cha 29.0 1.4E+02 0.0046 21.9 5.7 44 36-79 110-153 (190)
17 3ghg_A Fibrinogen alpha chain; 25.7 3.1E+02 0.011 23.3 9.1 76 12-93 54-129 (562)
18 2fs1_A PSD-1; solution structu 25.4 78 0.0027 18.9 3.2 20 32-51 6-25 (56)
No 1
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=100.00 E-value=1.5e-42 Score=244.70 Aligned_cols=107 Identities=31% Similarity=0.424 Sum_probs=93.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 038359 4 FRGQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKI 83 (110)
Q Consensus 4 ~~~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i 83 (110)
+++|+|||+||+||++|++||++||++|++||||||+||++||+.||.++|++|+.|++.++|+++....+++++|+.+|
T Consensus 6 mSqs~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT~~ki 85 (119)
T 4efa_G 6 MSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGEL 85 (119)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CTTSSSHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcccCC
Q 038359 84 KQLKDSALKVSKEVTDLLIKYITTIKN 110 (110)
Q Consensus 84 ~~i~~~~~~nk~~Vv~~Ll~~V~~V~p 110 (110)
..|+.+|.+|++.||++||++||||+|
T Consensus 86 ~~i~~~~~~~k~~Vv~~Ll~~V~dvkp 112 (119)
T 4efa_G 86 AEIKKIAEKKKDDVVKILIETVIKPSA 112 (119)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999998
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=96.65 E-value=0.021 Score=41.09 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCchhHHHHHHHHHHHH
Q 038359 15 NAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISET------------SGSSESTVKRLEEETEIK 82 (110)
Q Consensus 15 ~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~------------~g~~~~~~~~l~~et~~~ 82 (110)
+|+.+|..|+++|+..-..-+.+|+.+|+...+.....-+.+.+...... +.-.+.....+-.++...
T Consensus 10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~ 89 (187)
T 3v6i_A 10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA 89 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999998888777777665443221 223344445555555666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 038359 83 IKQLKDSALKVSKEVTDLLIKY 104 (110)
Q Consensus 83 i~~i~~~~~~nk~~Vv~~Ll~~ 104 (110)
|..+-.+ ..+.+-+.++++..
T Consensus 90 L~~~~~~-~~Y~~~L~~Li~ea 110 (187)
T 3v6i_A 90 LEALPQK-PEWPEVVRKLALEA 110 (187)
T ss_dssp HHHGGGS-TTHHHHHHHHHHHH
T ss_pred HHhhhCC-ccHHHHHHHHHHHH
Confidence 6555443 22334344444433
No 3
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=96.57 E-value=0.0049 Score=37.83 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 038359 9 GIQMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEK 44 (110)
Q Consensus 9 GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~ 44 (110)
=|..+-.||.+|.+||.+|.+.+..++..|+.+|..
T Consensus 17 vL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke 52 (56)
T 2k6i_A 17 AIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK 52 (56)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566899999999999999999999999999974
No 4
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=95.84 E-value=0.13 Score=30.64 Aligned_cols=48 Identities=33% Similarity=0.351 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 11 QMLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQ 58 (110)
Q Consensus 11 QqLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk 58 (110)
+.|-.|-.+|..||..|+....+...++..+|..|.+....+--.+..
T Consensus 2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie 49 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999998888888887777777766655444443
No 5
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=94.88 E-value=0.55 Score=31.89 Aligned_cols=90 Identities=22% Similarity=0.322 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 038359 6 GQGGIQMLLNAEQEAQHIVSSARNLKMARLKQAK-----------DEAEKEVTLYKSHLETEYQKRISETSGSSESTVKR 74 (110)
Q Consensus 6 ~s~GIQqLL~AEkeA~~iV~~AR~~r~~rLKqAK-----------~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~ 74 (110)
|..-|+.|-.=|++=...+..||+.=...++.|. ..|...-.+|+..-+.+-. .+...
T Consensus 4 g~gllk~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~-----------ri~~e 72 (105)
T 3v6i_B 4 GLGLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETE-----------ALLAR 72 (105)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 4455666655555555555555555445554444 4444444444444444433 33345
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 038359 75 LEEETEIKIKQLKDSALKVSKEVTDLLIKYIT 106 (110)
Q Consensus 75 l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~V~ 106 (110)
........-+.++.....+-+..|..+|..|+
T Consensus 73 ara~Aeaea~~v~~~A~~r~~~Av~~vLkeVL 104 (105)
T 3v6i_B 73 YRERAEAEAKAVREKAMARLDEAVALVLKEVL 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence 55666777788899999999999999999886
No 6
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=94.24 E-value=1.1 Score=32.99 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCCchhHHHHHHHHHHH
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISE------------TSGSSESTVKRLEEETEI 81 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~------------~~g~~~~~~~~l~~et~~ 81 (110)
-+|+..|.+|..+|...-..-..++..++...|..+...++.+....... .+...+.....+-.++..
T Consensus 26 qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~a~~ 105 (233)
T 4efa_E 26 KEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKE 105 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999887555445555555555655555544444322211 123344555556666777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Q 038359 82 KIKQLKDSALKVSKEVTDLLIKYI 105 (110)
Q Consensus 82 ~i~~i~~~~~~nk~~Vv~~Ll~~V 105 (110)
+|..+..+-..++.-+..+++..+
T Consensus 106 ~L~~~~~d~~~Y~~lL~~Li~eal 129 (233)
T 4efa_E 106 KLSGIANNRDEYKPILQSLIVEAL 129 (233)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHH
Confidence 776665444444444444444443
No 7
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=93.06 E-value=0.18 Score=29.85 Aligned_cols=38 Identities=39% Similarity=0.496 Sum_probs=28.9
Q ss_pred hHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 038359 8 GGIQMLL-----NAEQEAQHIVSSARNLKMARLKQAKDEAEKE 45 (110)
Q Consensus 8 ~GIQqLL-----~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~E 45 (110)
.|+..|. +|..+|..|+.+|+..-..-+.+|+.+|+.+
T Consensus 6 ~gle~i~~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~ 48 (52)
T 2kk7_A 6 MGVDKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEKR 48 (52)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555544 5888888888888888888888888887764
No 8
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=90.90 E-value=0.2 Score=35.08 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 14 LNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQK 59 (110)
Q Consensus 14 L~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~ 59 (110)
=+|+.+|..|+++|+.....-+.+|+.+|..+.+.+..+-+.+...
T Consensus 13 ~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~ 58 (198)
T 2dm9_A 13 KEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL 58 (198)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999988877776666555443
No 9
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=77.81 E-value=0.5 Score=32.99 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038359 13 LLNAEQEAQHIVSSARNL 30 (110)
Q Consensus 13 LL~AEkeA~~iV~~AR~~ 30 (110)
|-+|..+|.+|+.+|+..
T Consensus 23 l~eA~~~a~~i~~~a~~e 40 (198)
T 2dm9_A 23 LNEARQQAEKIKEEARRN 40 (198)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666666554
No 10
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=77.04 E-value=8.7 Score=22.36 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 038359 17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLET 55 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~ 55 (110)
++=-.+|+.+|+..-..-|.+|+.+|..=++.-+.+-+.
T Consensus 9 e~i~~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 9 DKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444568889999998888999998888888876655443
No 11
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=74.01 E-value=11 Score=21.96 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 23 IVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRI 61 (110)
Q Consensus 23 iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~ 61 (110)
++.+||..-...+.+|+..|...++....+-..+-....
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~ 41 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666555555554444433
No 12
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=70.35 E-value=22 Score=23.96 Aligned_cols=15 Identities=53% Similarity=0.629 Sum_probs=6.1
Q ss_pred HhHHHHHHHHHHHHH
Q 038359 34 RLKQAKDEAEKEVTL 48 (110)
Q Consensus 34 rLKqAK~eA~~EIe~ 48 (110)
+|-+|+.+|..+|+.
T Consensus 21 ~lE~Ar~eA~~~v~~ 35 (105)
T 3v6i_B 21 RLEAAKKEAEERVKR 35 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 13
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=39.33 E-value=54 Score=18.81 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 038359 73 KRLEEETEIKIKQLKDSALKVSKEVTDLLIKYITT 107 (110)
Q Consensus 73 ~~l~~et~~~i~~i~~~~~~nk~~Vv~~Ll~~V~~ 107 (110)
.+++.=-+.-|.+++..+++-|+.+|+-+..-.+.
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777778889999999999999999988776543
No 14
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=38.10 E-value=99 Score=21.43 Aligned_cols=40 Identities=18% Similarity=0.078 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038359 23 IVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRIS 62 (110)
Q Consensus 23 iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~ 62 (110)
|=.+|+..-..-+.+|+.+|..=+++.+.+-+........
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~ 46 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARER 46 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777777777766666666655443
No 15
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=33.20 E-value=1.3e+02 Score=21.53 Aligned_cols=39 Identities=18% Similarity=0.017 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 038359 17 EQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLET 55 (110)
Q Consensus 17 EkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~ 55 (110)
++-.+-|.++|+..-..-+..|.+||..|......+...
T Consensus 18 ~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~ 56 (233)
T 4efa_E 18 NKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETN 56 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999888888888999998887776555433
No 16
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=29.00 E-value=1.4e+02 Score=21.94 Aligned_cols=44 Identities=7% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 038359 36 KQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEET 79 (110)
Q Consensus 36 KqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et 79 (110)
.+-++.|+++|+.|-........+-.+.+...........+..+
T Consensus 110 eEwrEKAKKELDDWYenYNEQ~EKnKa~NR~aEEeFLaqRddtt 153 (190)
T 3lvg_D 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCccch
Confidence 36678899999999998888888776666555544444444433
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.71 E-value=3.1e+02 Score=23.32 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 038359 12 MLLNAEQEAQHIVSSARNLKMARLKQAKDEAEKEVTLYKSHLETEYQKRISETSGSSESTVKRLEEETEIKIKQLKDSAL 91 (110)
Q Consensus 12 qLL~AEkeA~~iV~~AR~~r~~rLKqAK~eA~~EIe~yr~~kE~efk~~~~~~~g~~~~~~~~l~~et~~~i~~i~~~~~ 91 (110)
.|++.|+.-..+|++=|+. |.+= ..--++|+.|-...-..++.....+. +++....++-.+-...|..|+..+.
T Consensus 54 lLdkqErDltkrINELKnq----LEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNS----LFEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HTHH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHH----HHHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999988876 3333 44556777776666666655554443 4444444444444455554444444
Q ss_pred Hh
Q 038359 92 KV 93 (110)
Q Consensus 92 ~n 93 (110)
.+
T Consensus 128 nQ 129 (562)
T 3ghg_A 128 EK 129 (562)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 18
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=25.40 E-value=78 Score=18.95 Aligned_cols=20 Identities=40% Similarity=0.420 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 038359 32 MARLKQAKDEAEKEVTLYKS 51 (110)
Q Consensus 32 ~~rLKqAK~eA~~EIe~yr~ 51 (110)
...|++||+.|-.|...|=-
T Consensus 6 ~~~L~eAKe~Ai~El~~~GI 25 (56)
T 2fs1_A 6 ANSLAQAKEAAIKELKQYGI 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 45789999999988887544
Done!