BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038360
         (149 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|1VM0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|2Q3V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
 pdb|2Q3V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
          Length = 130

 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 84/100 (84%)

Query: 26  SIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGL 85
           + +S KKNRIQVSNTKKPLFFYVNLAKRY QQ+++VELSALG AI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYXQQYNDVELSALGXAIATVVTVTEILKNNGF 73

Query: 86  ATEKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSL 125
           A EKK+ TS V +KD+ +GR +QKAKIEI L KSEKFD L
Sbjct: 74  AVEKKIXTSIVDIKDDARGRPVQKAKIEITLVKSEKFDEL 113


>pdb|1NH9|A Chain A, Crystal Structure Of A Dna Binding Protein Mja10b From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 87

 Score = 33.5 bits (75), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 41  KKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKD 100
           KKP+  YV      +  +DEV + A G AI   V +AE+++N  +   K         K 
Sbjct: 9   KKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKV 68

Query: 101 ENK-GRFIQKAKIEIVLGK 118
           +N  GR +  + IEIVL K
Sbjct: 69  KNPDGREVNVSTIEIVLAK 87


>pdb|1NFH|A Chain A, Structure Of A Sir2 Substrate, Alba, Reveals A Mechanism
           For Deactylation-Induced Enhancement Of Dna-Binding
 pdb|1NFH|B Chain B, Structure Of A Sir2 Substrate, Alba, Reveals A Mechanism
           For Deactylation-Induced Enhancement Of Dna-Binding
 pdb|1NFJ|A Chain A, Structure Of A Sir2 Substrate, Alba, Reveals A Mechanism
           For Deactylation-Induced Enhancement Of Dna-Binding
          Length = 89

 Score = 30.0 bits (66), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 42  KPLFFYVNLAKRYIQQ-HDEVELSALGMAITTVVTIAEILKNNGLA--TEKKVLTSTVGM 98
           KP+  YV      + +  DEV + A G AI+  V +AEI++N  +     K++   T  +
Sbjct: 11  KPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEEL 70

Query: 99  KDENKGRFIQKAKIEIVLGK 118
           + E +GR    + IEIVL K
Sbjct: 71  ESE-QGRRSNVSTIEIVLAK 89


>pdb|1SB2|A Chain A, High Resolution Structure Determination Of Rhodocetin
 pdb|3GPR|A Chain A, Crystal Structure Of Rhodocetin
          Length = 133

 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 51  AKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQK 109
           A+R+  +Q  E  L ++   +  V  +  +++NN    E K+  S +G+K ENKG   Q+
Sbjct: 26  AERFCTEQEKEAHLVSMENRLEAVF-VDMVMENN---FENKIYRSWIGLKIENKG---QR 78

Query: 110 AKIEIVLGKSEKFDSL 125
           + +E   G S  +++L
Sbjct: 79  SNLEWSDGSSISYENL 94


>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 119

 Score = 26.2 bits (56), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 100 DENKGRFIQKAKIEIVLGKSEKFDSLM 126
           ++NK R +Q++ I   L KS+ FD L+
Sbjct: 88  EDNKRRTLQRSDIAAALSKSDMFDFLI 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,642,737
Number of Sequences: 62578
Number of extensions: 81402
Number of successful extensions: 175
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 14
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)