BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038360
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana
GN=At2g34160 PE=1 SV=1
Length = 130
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 90/102 (88%)
Query: 28 ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLAT 87
+S KKNRIQVSNTKKPLFFYVNLAKRY+QQ+++VELSALGMAI TVVT+ EILKNNG A
Sbjct: 16 DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAV 75
Query: 88 EKKVLTSTVGMKDENKGRFIQKAKIEIVLGKSEKFDSLMIAS 129
EKK++TSTV +KD+ +GR +QKAKIEI L KSEKFD LM A+
Sbjct: 76 EKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAA 117
>sp|Q57665|ALBA_METJA DNA/RNA-binding protein Alba OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=albA PE=1 SV=1
Length = 87
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 41 KKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKD 100
KKP+ YV + +DEV + A G AI V +AE+++N + K K
Sbjct: 9 KKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKV 68
Query: 101 EN-KGRFIQKAKIEIVLGK 118
+N GR + + IEIVL K
Sbjct: 69 KNPDGREVNVSTIEIVLAK 87
>sp|Q8TWE6|ALBA2_METKA DNA/RNA-binding protein Alba 2 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=albA2 PE=3
SV=1
Length = 93
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 31 KKNRIQVSNTKKPLFFYV-NLAKRYIQQHDEVELSALGMAITTVVTIAEILKNN 83
++N I V N KP+ YV + ++ + DEV+L A G AI+ V +AE ++NN
Sbjct: 3 EENVIYVGN--KPVTNYVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIRNN 54
>sp|Q971T6|ALBA2_SULTO DNA/RNA-binding protein Alba 2 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=albA2 PE=3 SV=1
Length = 90
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 31 KKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKN---NGLAT 87
K N I +S TK+ + +++ + Q +DEVEL +G +I V + LK+ +G+
Sbjct: 5 KPNEILISRTKRVEDYVLDVIVMFNQGYDEVELKGVGNSIYKAVEVYNQLKDRLGDGIIL 64
Query: 88 EKKVLTSTVGMKDENKGRFI 107
EK + S V KD + +I
Sbjct: 65 EKADIGSEV--KDRRRISYI 82
>sp|A3CVI3|ALBA_METMJ DNA/RNA-binding protein Alba OS=Methanoculleus marisnigri (strain
ATCC 35101 / DSM 1498 / JR1) GN=albA PE=3 SV=1
Length = 91
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 31 KKNRIQVSNTKKPLFFYV-NLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLAT-- 87
K N + V N KP+ YV + ++ +EV + A G AI+ V AEI N LA
Sbjct: 3 KDNTVFVGN--KPVMNYVLAVVTQFNNGAEEVAIKARGKAISRAVDTAEIALNRFLANVD 60
Query: 88 EKKVLTSTVGMKDENKGRFIQKAKIEIVL 116
+K++ TST M D + G+ + IEIVL
Sbjct: 61 KKEIFTST-EMIDTDTGK-TNVSSIEIVL 87
>sp|O28323|ALBA2_ARCFU DNA/RNA-binding protein Alba 2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=albA2 PE=1 SV=1
Length = 89
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 59 DEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFIQKAKIEIVL 116
DEV + A G AI+ V +AEI++N + K++ T ++ E +GR + IEIVL
Sbjct: 29 DEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRSNVSTIEIVL 87
Query: 117 GK 118
K
Sbjct: 88 AK 89
>sp|Q9DBH0|WWP2_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2
PE=1 SV=1
Length = 870
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 71 TTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVL 116
T V ++ +LKNNG E L T+ ++ ENKG + ++ I L
Sbjct: 98 TASVNLSNVLKNNGGKMENTQL--TLNLQTENKGSVVSGGELTIFL 141
>sp|P18433|PTPRA_HUMAN Receptor-type tyrosine-protein phosphatase alpha OS=Homo sapiens
GN=PTPRA PE=1 SV=2
Length = 802
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 17 TTTKTTTTGSIESHKKNRIQVSNTK-KPLFFYVNLAKRYIQQHDEVELSALGMAITTVVT 75
T K G + + R Q+ T + +F Y L + Y+ E+E+++L + +
Sbjct: 464 TERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYGDTELEVTSLETHLQKIYN 523
Query: 76 IAEILKNNGLATEKKVLTS 94
NNGL E K LTS
Sbjct: 524 KIPGTSNNGLEEEFKKLTS 542
>sp|O00308|WWP2_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2
PE=1 SV=2
Length = 870
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 71 TTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIEIVL 116
T V ++ +LKNNG E L T+ ++ ENKG + ++ I L
Sbjct: 98 TASVNLSNVLKNNGGKMENMQL--TLNLQTENKGSVVSGGELTIFL 141
>sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16
PE=3 SV=1
Length = 1034
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 77 AEILKNNGLATEKKVLTSTVGMKDENKGRFIQKAKIE-IVLGKSEKFDSLMIASAPAPAP 135
A + K +G EKKV S V K+E RF Q ++ +++ K+DS+++ P P
Sbjct: 490 ARLSKQDGGTDEKKVKKSNVSYKNEE--RFPQDTDVQKMLIFVDRKYDSVIVPIFGIPVP 547
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.123 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,494,189
Number of Sequences: 539616
Number of extensions: 1658013
Number of successful extensions: 9171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 9061
Number of HSP's gapped (non-prelim): 116
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)