Query         038360
Match_columns 149
No_of_seqs    128 out of 165
Neff          4.1 
Searched_HMMs 46136
Date          Fri Mar 29 10:12:47 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038360hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG1581 Ssh10b Archaeal DNA-bi  99.9 1.4E-25 3.1E-30  163.6   9.7   85   31-119     3-91  (91)
  2 TIGR00285 DNA-binding protein   99.9 1.4E-24   3E-29  157.9   9.9   83   32-118     1-87  (87)
  3 PRK04015 DNA/RNA-binding prote  99.9 2.9E-24 6.4E-29  157.2  10.2   87   30-119     2-91  (91)
  4 PF01918 Alba:  Alba;  InterPro  99.5 1.2E-13 2.6E-18   93.7   8.3   60   33-93      1-68  (70)
  5 KOG2567 Uncharacterized conser  99.2 2.7E-11 5.8E-16   97.7   6.1   91   29-120    15-116 (179)
  6 PF12328 Rpp20:  Rpp20 subunit   98.4 1.6E-06 3.4E-11   67.9   7.2   67   32-100     3-102 (144)
  7 PF04232 SpoVS:  Stage V sporul  83.7     4.3 9.3E-05   29.7   5.8   48   33-81      2-50  (86)
  8 PF02780 Transketolase_C:  Tran  72.5      10 0.00022   27.5   4.9   39   55-93      6-45  (124)
  9 COG3967 DltE Short-chain dehyd  56.7      18 0.00039   31.2   4.2   42   32-80      5-46  (245)
 10 COG3958 Transketolase, C-termi  49.3      17 0.00037   32.4   3.0   55   31-85    159-219 (312)
 11 COG0504 PyrG CTP synthase (UTP  38.8      34 0.00073   32.6   3.3   32   62-94     10-42  (533)
 12 KOG0523 Transketolase [Carbohy  35.3      30 0.00065   33.5   2.5   76    9-90    461-538 (632)
 13 COG2359 SpoVS Stage V sporulat  33.7 1.6E+02  0.0034   21.7   5.5   45   34-80      3-49  (87)
 14 PF12146 Hydrolase_4:  Putative  33.0      66  0.0014   22.1   3.3   30   59-88     18-47  (79)
 15 PRK01686 hisG ATP phosphoribos  32.5      39 0.00085   28.2   2.5   59   34-98    115-186 (215)
 16 TIGR00070 hisG ATP phosphoribo  30.7      39 0.00085   27.5   2.2   51   46-96    115-178 (182)
 17 cd03113 CTGs CTP synthetase (C  30.2      58  0.0013   28.3   3.2   33   62-95      9-42  (255)
 18 PLN02245 ATP phosphoribosyl tr  30.2      86  0.0019   28.8   4.4   62   33-100   195-273 (403)
 19 COG0040 HisG ATP phosphoribosy  30.0      44 0.00095   29.4   2.5   52   46-97    122-186 (290)
 20 PF06418 CTP_synth_N:  CTP synt  27.4      47   0.001   29.1   2.2   34   62-96     10-44  (276)
 21 COG0022 AcoB Pyruvate/2-oxoglu  27.3      55  0.0012   29.3   2.7   49   48-96    189-239 (324)
 22 CHL00144 odpB pyruvate dehydro  26.4   1E+02  0.0023   26.7   4.2   41   53-93    196-237 (327)
 23 PRK11892 pyruvate dehydrogenas  25.2      98  0.0021   28.5   3.9   45   49-93    330-376 (464)
 24 PLN02683 pyruvate dehydrogenas  25.0      89  0.0019   27.5   3.5   41   53-93    223-264 (356)
 25 PRK13584 hisG ATP phosphoribos  24.6      53  0.0011   27.4   1.9   58   35-98    106-176 (204)
 26 PRK05899 transketolase; Review  22.4 1.1E+02  0.0023   28.7   3.7   40   54-93    506-546 (624)
 27 PRK05380 pyrG CTP synthetase;   20.8      97  0.0021   29.4   3.1   33   62-95     11-44  (533)

No 1  
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.93  E-value=1.4e-25  Score=163.64  Aligned_cols=85  Identities=35%  Similarity=0.494  Sum_probs=79.6

Q ss_pred             CccEEEEecCCCchhhHHHHHH--HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCee
Q 038360           31 KKNRIQVSNTKKPLFFYVNLAK--RYIQQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRF  106 (149)
Q Consensus        31 ~~N~I~VS~~KKP~~~YV~lAk--~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~  106 (149)
                      ++|.|+|++  ||.|||| ||.  +|++|.+||+|+|+|+|||+|||+|||+|+|++  +++++|+++|++++. .+||.
T Consensus         3 ~envV~vG~--KPvmNYV-lAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~-~~gr~   78 (91)
T COG1581           3 EENVVLVGK--KPVMNYV-LAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEG-EDGRT   78 (91)
T ss_pred             CccEEEEcC--cchHHHH-HHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeec-CCCce
Confidence            459999996  9999999 998  788999999999999999999999999999999  999999999999998 58998


Q ss_pred             cccceEEEEEeeC
Q 038360          107 IQKAKIEIVLGKS  119 (149)
Q Consensus       107 ~~vskIEIvL~Ks  119 (149)
                      +++|.|||+|.|.
T Consensus        79 ~~VS~IeI~L~k~   91 (91)
T COG1581          79 RNVSTIEIVLAKK   91 (91)
T ss_pred             eeEEEEEEEEecC
Confidence            8999999999873


No 2  
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.92  E-value=1.4e-24  Score=157.88  Aligned_cols=83  Identities=39%  Similarity=0.518  Sum_probs=76.0

Q ss_pred             ccEEEEecCCCchhhHHHHHH--HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeec
Q 038360           32 KNRIQVSNTKKPLFFYVNLAK--RYIQQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFI  107 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk--~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~  107 (149)
                      +|.|+|++  ||.|+|| +|.  +|++|.++|+|||||+||++||++||+|+||++  +.+++|+++|+.+.+ ++|+..
T Consensus         1 e~~i~vG~--KPvmnYV-lavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~-~~G~~~   76 (87)
T TIGR00285         1 ENVVYIGN--KPVMNYV-LAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKS-EQGREV   76 (87)
T ss_pred             CCEEEEcC--CcHHHHH-HHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeec-CCCcee
Confidence            48999996  9999999 666  677789999999999999999999999999987  779999999999988 589998


Q ss_pred             ccceEEEEEee
Q 038360          108 QKAKIEIVLGK  118 (149)
Q Consensus       108 ~vskIEIvL~K  118 (149)
                      ++|+|||+|.|
T Consensus        77 ~VStIEI~l~~   87 (87)
T TIGR00285        77 NVSTIEIVLAK   87 (87)
T ss_pred             eEEEEEEEEeC
Confidence            99999999986


No 3  
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.91  E-value=2.9e-24  Score=157.19  Aligned_cols=87  Identities=33%  Similarity=0.401  Sum_probs=78.5

Q ss_pred             CCccEEEEecCCCchhhHHHHHHHHh-ccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCee
Q 038360           30 HKKNRIQVSNTKKPLFFYVNLAKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRF  106 (149)
Q Consensus        30 ~~~N~I~VS~~KKP~~~YV~lAk~~L-q~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~  106 (149)
                      ..+|.|+|++  ||.|+||..+..+| ++.++|+|||||+||++||+||||||||++  +.+++|.++|+.+.+ ++|+.
T Consensus         2 ~~en~i~Ig~--kpvmnYV~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~-~~g~~   78 (91)
T PRK04015          2 AEENVVLVGK--KPVMNYVLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTS-EDGRE   78 (91)
T ss_pred             CCCCEEEEcC--CcHHHHHHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeec-CCCcE
Confidence            4679999997  79999996666555 578999999999999999999999999988  999999999999988 58888


Q ss_pred             cccceEEEEEeeC
Q 038360          107 IQKAKIEIVLGKS  119 (149)
Q Consensus       107 ~~vskIEIvL~Ks  119 (149)
                      .++|+|||+|+|.
T Consensus        79 ~~VS~IEI~l~k~   91 (91)
T PRK04015         79 SNVSTIEIVLEKK   91 (91)
T ss_pred             EEEEEEEEEEecC
Confidence            8999999999983


No 4  
>PF01918 Alba:  Alba;  InterPro: IPR002775  Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.50  E-value=1.2e-13  Score=93.73  Aligned_cols=60  Identities=38%  Similarity=0.558  Sum_probs=52.5

Q ss_pred             cEEEEecCCCchhhHHHHHHHHh-----ccCCEEEEeecchhHHHHHHHHHHHHhC---CcEEEeEEEe
Q 038360           33 NRIQVSNTKKPLFFYVNLAKRYI-----QQHDEVELSALGMAITTVVTIAEILKNN---GLATEKKVLT   93 (149)
Q Consensus        33 N~I~VS~~KKP~~~YV~lAk~~L-----q~~~eV~LsAlG~AIs~AV~VAEILKrr---gla~ikkI~T   93 (149)
                      |.|+|+. ++|.++||..+..+|     +++++|.|+|+|+||++||.+||+||++   ++.++.++..
T Consensus         1 n~I~V~~-~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~   68 (70)
T PF01918_consen    1 NEIYVSS-NSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS   68 (70)
T ss_dssp             SEEEE-S-TS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred             CEEEECC-CCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence            7899998 569999999999999     7899999999999999999999999999   5788777765


No 5  
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20  E-value=2.7e-11  Score=97.68  Aligned_cols=91  Identities=26%  Similarity=0.342  Sum_probs=73.5

Q ss_pred             cCCccEEEEecCCCchhhHHHHHHHHhcc--CCEEEEeecchhHHHHHHHHHHHHhC--CcEEEeEEEeeee-eeccC-C
Q 038360           29 SHKKNRIQVSNTKKPLFFYVNLAKRYIQQ--HDEVELSALGMAITTVVTIAEILKNN--GLATEKKVLTSTV-GMKDE-N  102 (149)
Q Consensus        29 ~~~~N~I~VS~~KKP~~~YV~lAk~~Lq~--~~eV~LsAlG~AIs~AV~VAEILKrr--gla~ikkI~Tst~-~i~~e-~  102 (149)
                      ....|+++|..+.|-+ ||+.+|..+|++  +..|++||+|+||+++|.+|||||||  ||+++++|.--+. +.+.- .
T Consensus        15 pp~a~emrV~~g~kir-N~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~~   93 (179)
T KOG2567|consen   15 PPDANEMRVKSGSKIR-NLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPTE   93 (179)
T ss_pred             CCCcceEEEccCchHH-HHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhcccccc
Confidence            3567889999988777 999999999986  79999999999999999999999999  8888888875433 33321 2


Q ss_pred             CC-----eecccceEEEEEeeCc
Q 038360          103 KG-----RFIQKAKIEIVLGKSE  120 (149)
Q Consensus       103 ~G-----r~~~vskIEIvL~Ks~  120 (149)
                      +|     -.++||.|-|.|.+.+
T Consensus        94 eGl~pl~vtRhVp~l~IlLS~de  116 (179)
T KOG2567|consen   94 EGLEPLEVTRHVPMLHILLSLDE  116 (179)
T ss_pred             cCccceEEeeccceEEEEEeccc
Confidence            33     2457999999999853


No 6  
>PF12328 Rpp20:  Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=98.35  E-value=1.6e-06  Score=67.93  Aligned_cols=67  Identities=25%  Similarity=0.359  Sum_probs=49.2

Q ss_pred             ccEEEEecCCCchhhHHHHHHHHhcc---------------------------------CCEEEEeecchhHHHHHHHHH
Q 038360           32 KNRIQVSNTKKPLFFYVNLAKRYIQQ---------------------------------HDEVELSALGMAITTVVTIAE   78 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk~~Lq~---------------------------------~~eV~LsAlG~AIs~AV~VAE   78 (149)
                      ++.|+||+ +-|.|.+|.=...||.+                                 .++|.|+|||+||.+|+.++.
T Consensus         3 ~~~iyVss-~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~   81 (144)
T PF12328_consen    3 PKVIYVSS-KTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLAL   81 (144)
T ss_dssp             TTEEE--S-S--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHH
T ss_pred             CcEEEEec-CCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHH
Confidence            57899998 55999888777777731                                 179999999999999999999


Q ss_pred             HHHhCCcEEEeEEEeeeeeecc
Q 038360           79 ILKNNGLATEKKVLTSTVGMKD  100 (149)
Q Consensus        79 ILKrrgla~ikkI~Tst~~i~~  100 (149)
                      -++++. .-...|.|+|+.+-|
T Consensus        82 ~Fq~~~-~~~V~V~TgTV~vvD  102 (144)
T PF12328_consen   82 WFQRKK-GYKVEVRTGTVEVVD  102 (144)
T ss_dssp             HHHHTT----EEEEEEEEEEEE
T ss_pred             HHhhcC-CeEEEEEeceEEEEE
Confidence            999885 445678888886544


No 7  
>PF04232 SpoVS:  Stage V sporulation protein S (SpoVS);  InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=83.74  E-value=4.3  Score=29.72  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             cEEEEecCCCchhhHHHHHHHHhccCCEEEEeecch-hHHHHHHHHHHHH
Q 038360           33 NRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGM-AITTVVTIAEILK   81 (149)
Q Consensus        33 N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~-AIs~AV~VAEILK   81 (149)
                      +.+.||++.+|. ...---...|.+++.|+|.|.|- |++.||...-|-+
T Consensus         2 e~LKVSs~S~p~-~vAgAIa~~lre~~~v~lqaiGa~AvnqAvKAIAiAR   50 (86)
T PF04232_consen    2 EVLKVSSKSNPN-AVAGAIAGVLREGGKVELQAIGAGAVNQAVKAIAIAR   50 (86)
T ss_dssp             -EEEE-TT--HH-HHHHHHHHHHHHTSEEEEEE-SHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHH-HHHHHHHHHHhcCCcEEEEEECHHHHHHHHHHHHHHH
Confidence            468999987887 22211115667788999999998 8999998877764


No 8  
>PF02780 Transketolase_C:  Transketolase, C-terminal domain;  InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.  1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=72.49  E-value=10  Score=27.51  Aligned_cols=39  Identities=21%  Similarity=0.355  Sum_probs=33.4

Q ss_pred             hccCCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEe
Q 038360           55 IQQHDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLT   93 (149)
Q Consensus        55 Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~T   93 (149)
                      +++...|.|=+.|.....|+++++.|+.+|+ +.+-++++
T Consensus         6 ~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~   45 (124)
T PF02780_consen    6 LREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRT   45 (124)
T ss_dssp             EESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEE
Confidence            3556889999999999999999999999987 66666665


No 9  
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=56.70  E-value=18  Score=31.18  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=31.5

Q ss_pred             ccEEEEecCCCchhhHHHHHHHHhccCCEEEEeecchhHHHHHHHHHHH
Q 038360           32 KNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEIL   80 (149)
Q Consensus        32 ~N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~AIs~AV~VAEIL   80 (149)
                      -|.|+|+.+..-. - .-||++|++-.++|+|.||-++     .++|+.
T Consensus         5 gnTiLITGG~sGI-G-l~lak~f~elgN~VIi~gR~e~-----~L~e~~   46 (245)
T COG3967           5 GNTILITGGASGI-G-LALAKRFLELGNTVIICGRNEE-----RLAEAK   46 (245)
T ss_pred             CcEEEEeCCcchh-h-HHHHHHHHHhCCEEEEecCcHH-----HHHHHH
Confidence            4789999866333 3 4499999999999999999653     455555


No 10 
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=49.29  E-value=17  Score=32.36  Aligned_cols=55  Identities=20%  Similarity=0.385  Sum_probs=39.8

Q ss_pred             CccEEEEecCCCchhhHHH-----HHH-HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc
Q 038360           31 KKNRIQVSNTKKPLFFYVN-----LAK-RYIQQHDEVELSALGMAITTVVTIAEILKNNGL   85 (149)
Q Consensus        31 ~~N~I~VS~~KKP~~~YV~-----lAk-~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl   85 (149)
                      .+--+|.+..+-|...|-.     +.| ..|+....|.|=|.|--...++..|++|+.+|+
T Consensus       159 GP~Y~Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GI  219 (312)
T COG3958         159 GPVYMRLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGI  219 (312)
T ss_pred             CCEEEEecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCC
Confidence            3344555554444433332     333 456778899999999999999999999999997


No 11 
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=38.78  E-value=34  Score=32.55  Aligned_cols=32  Identities=34%  Similarity=0.485  Sum_probs=26.9

Q ss_pred             EEeecchhHHHHHHHHHHHHhCCc-EEEeEEEee
Q 038360           62 ELSALGMAITTVVTIAEILKNNGL-ATEKKVLTS   94 (149)
Q Consensus        62 ~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Ts   94 (149)
                      ++|+||+-|.. -.++-+||+||+ +++.||+-.
T Consensus        10 VvSslGKGi~a-aSlg~lLk~rG~~Vt~~KlDPY   42 (533)
T COG0504          10 VVSSLGKGITA-ASLGRLLKARGLKVTIQKLDPY   42 (533)
T ss_pred             eecccccHHHH-HHHHHHHHHCCceEEEEecccc
Confidence            57999999965 479999999999 888888753


No 12 
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=35.29  E-value=30  Score=33.48  Aligned_cols=76  Identities=22%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             HhhhhhhccccccccccccccCCccEEEEecCCCchhhHHHHHHHHhccC-CEEEEeecchhHHHHHHHHHHHHhCCc-E
Q 038360            9 AAAAVAATTTTKTTTTGSIESHKKNRIQVSNTKKPLFFYVNLAKRYIQQH-DEVELSALGMAITTVVTIAEILKNNGL-A   86 (149)
Q Consensus         9 ~~~~~~~~~~~~~~t~~~~~~~~~N~I~VS~~KKP~~~YV~lAk~~Lq~~-~eV~LsAlG~AIs~AV~VAEILKrrgl-a   86 (149)
                      .|-+.|+++.-+|   ....-+..|.+++.+.   -++=+--++-.|++. +.|.|=|-|-....|+..||.|..+|+ +
T Consensus       461 ~av~~Aa~~~~~p---~i~~~~r~~~~~~~~~---~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi~v  534 (632)
T KOG0523|consen  461 NAVATAANTKGTP---SIRTLSRQNLPIYNNT---EIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGIKV  534 (632)
T ss_pred             HHHHHHHhcCCCe---eEEEecCccccccCCC---chhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhcCceE
Confidence            3444455444333   4455666777777652   222232222245554 599999999999999999999998987 4


Q ss_pred             EEeE
Q 038360           87 TEKK   90 (149)
Q Consensus        87 ~ikk   90 (149)
                      .|.+
T Consensus       535 rVvd  538 (632)
T KOG0523|consen  535 RVVD  538 (632)
T ss_pred             EEec
Confidence            4443


No 13 
>COG2359 SpoVS Stage V sporulation protein SpoVS [Function unknown]
Probab=33.74  E-value=1.6e+02  Score=21.72  Aligned_cols=45  Identities=24%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             EEEEecCCCchhhHHHHHH-HHhccCCEEEEeecch-hHHHHHHHHHHH
Q 038360           34 RIQVSNTKKPLFFYVNLAK-RYIQQHDEVELSALGM-AITTVVTIAEIL   80 (149)
Q Consensus        34 ~I~VS~~KKP~~~YV~lAk-~~Lq~~~eV~LsAlG~-AIs~AV~VAEIL   80 (149)
                      .+.||....|.  -|-=|. -.|.+++.++|.|.|. |++.+|..--|-
T Consensus         3 vLKVsa~S~Pn--sVAGAlAgvlr~~g~aEiQAiGagAvNQaVKAiAia   49 (87)
T COG2359           3 VLKVSAKSNPN--SVAGALAGVLRERGKAEIQAIGAGAVNQAVKAIAIA   49 (87)
T ss_pred             eEEeccCCCcc--hHHHHHHHHHHhcCceeeeeechHHHHHHHHHHHHH
Confidence            57788877776  353343 5788899999999998 999999987776


No 14 
>PF12146 Hydrolase_4:  Putative lysophospholipase;  InterPro: IPR022742  This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. 
Probab=32.99  E-value=66  Score=22.12  Aligned_cols=30  Identities=23%  Similarity=0.218  Sum_probs=26.9

Q ss_pred             CEEEEeecchhHHHHHHHHHHHHhCCcEEE
Q 038360           59 DEVELSALGMAITTVVTIAEILKNNGLATE   88 (149)
Q Consensus        59 ~eV~LsAlG~AIs~AV~VAEILKrrgla~i   88 (149)
                      -.|+++|+|+-+.+=-.+|+-|..+|+.++
T Consensus        18 ~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~   47 (79)
T PF12146_consen   18 VVVIVHGFGEHSGRYAHLAEFLAEQGYAVF   47 (79)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHhCCCEEE
Confidence            468899999999999999999999998754


No 15 
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=32.52  E-value=39  Score=28.16  Aligned_cols=59  Identities=31%  Similarity=0.555  Sum_probs=41.6

Q ss_pred             EEEEecCCCchhhHHHHHHHHhccC----------CEEEE---eecchhHHHHHHHHHHHHhCCcEEEeEEEeeeeee
Q 038360           34 RIQVSNTKKPLFFYVNLAKRYIQQH----------DEVEL---SALGMAITTVVTIAEILKNNGLATEKKVLTSTVGM   98 (149)
Q Consensus        34 ~I~VS~~KKP~~~YV~lAk~~Lq~~----------~eV~L---sAlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~i   98 (149)
                      ..+|-+      -|.+++++||+.+          +-|++   -|+=.+|-.-|..-.-||.+||..+..|-.++-.+
T Consensus       115 ~~rIAT------kYp~it~~yf~~~gv~~~iv~l~GsvE~aP~~GlAD~IvDivsTG~TLr~NgL~~ie~Il~s~A~L  186 (215)
T PRK01686        115 RLRVAT------KYPNIARRYFAEKGEQVEIIKLYGSVELAPLVGLADAIVDIVETGNTLRANGLVEVEEIMDISARL  186 (215)
T ss_pred             CCEEEe------CCHHHHHHHHHHcCCeEEEEECcCceeeccccCCccEEEEeecChHHHHHCcCEEeeEEEeeEEEE
Confidence            356654      5899999999642          22332   13445677778888899999998888887776653


No 16 
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=30.74  E-value=39  Score=27.47  Aligned_cols=51  Identities=37%  Similarity=0.567  Sum_probs=34.7

Q ss_pred             hHHHHHHHHhcc----------CCEEEE---eecchhHHHHHHHHHHHHhCCcEEEeEEEeeee
Q 038360           46 FYVNLAKRYIQQ----------HDEVEL---SALGMAITTVVTIAEILKNNGLATEKKVLTSTV   96 (149)
Q Consensus        46 ~YV~lAk~~Lq~----------~~eV~L---sAlG~AIs~AV~VAEILKrrgla~ikkI~Tst~   96 (149)
                      -|.+++++||.+          ++.|++   -|+=.+|-.-|..-.-|+.|||..+..|-.++-
T Consensus       115 kyp~i~~~~f~~~Gi~v~ii~l~GsvE~aP~~GlaD~IvDiv~TG~TL~~NgL~~ie~i~~s~a  178 (182)
T TIGR00070       115 KYPNLARRYFEKKGIDVEIIKLNGSVELAPLLGLADAIVDIVSTGTTLRENGLRIIEVILESSA  178 (182)
T ss_pred             CCHHHHHHHHHHcCCeEEEEECcceeecccCCCceeEEEEEeCCHHHHHHCCCEEeeEEEeeEE
Confidence            488899999964          233333   223335656677788899999988887776654


No 17 
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=30.20  E-value=58  Score=28.26  Aligned_cols=33  Identities=33%  Similarity=0.485  Sum_probs=27.2

Q ss_pred             EEeecchhHHHHHHHHHHHHhCCc-EEEeEEEeee
Q 038360           62 ELSALGMAITTVVTIAEILKNNGL-ATEKKVLTST   95 (149)
Q Consensus        62 ~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Tst   95 (149)
                      ++|+||+-|..| .+.-+||++|+ ++..||+-..
T Consensus         9 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~K~DpYl   42 (255)
T cd03113           9 VVSSLGKGITAA-SLGRLLKARGLKVTAQKLDPYL   42 (255)
T ss_pred             cccCcchHHHHH-HHHHHHHHCCCeEEEEeecccc
Confidence            579999998654 68899999999 8888887643


No 18 
>PLN02245 ATP phosphoribosyl transferase
Probab=30.16  E-value=86  Score=28.81  Aligned_cols=62  Identities=23%  Similarity=0.321  Sum_probs=40.6

Q ss_pred             cEEEEecCCCchhhHHHHHHHHhccCCE--EEEe------------ecchhHHHHHHHHHHHHhCCcEEEe--EEEeee-
Q 038360           33 NRIQVSNTKKPLFFYVNLAKRYIQQHDE--VELS------------ALGMAITTVVTIAEILKNNGLATEK--KVLTST-   95 (149)
Q Consensus        33 N~I~VS~~KKP~~~YV~lAk~~Lq~~~e--V~Ls------------AlG~AIs~AV~VAEILKrrgla~ik--kI~Tst-   95 (149)
                      ...+|-+      -|.+|+++||.+++.  +.|.            |+-.+|-.-|..-.-||.+||-.+.  .|--++ 
T Consensus       195 ~~~RIAT------kYp~ltr~ff~~~Gv~~v~Iv~l~GAvE~AP~lGlADaIvDIVsTGtTLraNgLk~i~~~~Il~S~A  268 (403)
T PLN02245        195 RPLRVVT------GFTYLGPKFMKDNGFKHVTFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIEGGVVLESQA  268 (403)
T ss_pred             CceEEEe------CCHHHHHHHHHHcCCCeEEEEECcCceecccccCchhhhcchhccHHHHHHCCCEEccCceEEEEEE
Confidence            3456654      599999999976433  3433            3344577777778889999998774  554444 


Q ss_pred             eeecc
Q 038360           96 VGMKD  100 (149)
Q Consensus        96 ~~i~~  100 (149)
                      ..|.+
T Consensus       269 ~LIan  273 (403)
T PLN02245        269 VLVAS  273 (403)
T ss_pred             EEEEe
Confidence            34543


No 19 
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=29.97  E-value=44  Score=29.38  Aligned_cols=52  Identities=31%  Similarity=0.478  Sum_probs=41.2

Q ss_pred             hHHHHHHHHhccC----CEEEE---------eecchhHHHHHHHHHHHHhCCcEEEeEEEeeeee
Q 038360           46 FYVNLAKRYIQQH----DEVEL---------SALGMAITTVVTIAEILKNNGLATEKKVLTSTVG   97 (149)
Q Consensus        46 ~YV~lAk~~Lq~~----~eV~L---------sAlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~   97 (149)
                      -|.|++++|++++    +.|.|         -|+..||-.-|..-.-||-+||..+..|-.++..
T Consensus       122 kYp~l~~~yf~~~g~~~~Ii~l~GsvE~aP~~GlADaIvDivsTG~TLkaNgL~~id~i~~ssa~  186 (290)
T COG0040         122 KYPNLARKYFAEKGIDVEIIKLSGSVELAPALGLADAIVDIVSTGTTLKANGLKEIEVIYDSSAR  186 (290)
T ss_pred             ccHHHHHHHHHHcCceEEEEEccCcEeeccccCccceEEEeecCCHhHHHCCCEEEEEEEeeEEE
Confidence            5999999999752    23333         3567899999999999999999888888777764


No 20 
>PF06418 CTP_synth_N:  CTP synthase N-terminus;  InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=27.42  E-value=47  Score=29.15  Aligned_cols=34  Identities=32%  Similarity=0.385  Sum_probs=25.7

Q ss_pred             EEeecchhHHHHHHHHHHHHhCCc-EEEeEEEeeee
Q 038360           62 ELSALGMAITTVVTIAEILKNNGL-ATEKKVLTSTV   96 (149)
Q Consensus        62 ~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Tst~   96 (149)
                      ++|+||+-|..| .++-+||.+|+ +++.||+-...
T Consensus        10 V~SglGKGi~aa-Sig~lLk~~G~~V~~~K~DPYlN   44 (276)
T PF06418_consen   10 VVSGLGKGITAA-SIGRLLKSRGYKVTMIKIDPYLN   44 (276)
T ss_dssp             SSSSSSHHHHHH-HHHHHHHCTT--EEEEEEE-SSS
T ss_pred             ccccccHHHHHH-HHHHHHHhCCeeeeeeeeccccc
Confidence            368999988644 78999999999 88999887433


No 21 
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=27.32  E-value=55  Score=29.35  Aligned_cols=49  Identities=22%  Similarity=0.377  Sum_probs=40.4

Q ss_pred             HHHHH-HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEeeee
Q 038360           48 VNLAK-RYIQQHDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLTSTV   96 (149)
Q Consensus        48 V~lAk-~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Tst~   96 (149)
                      +-|.| .+.++.+.|.|=+-|.....+++.||.|..+|+ +.|.+.+|-.-
T Consensus       189 iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~P  239 (324)
T COG0022         189 IPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSP  239 (324)
T ss_pred             ccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCc
Confidence            44555 455678999999999999999999999999998 88888887443


No 22 
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=26.45  E-value=1e+02  Score=26.69  Aligned_cols=41  Identities=7%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEe
Q 038360           53 RYIQQHDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLT   93 (149)
Q Consensus        53 ~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~T   93 (149)
                      ..++..+.|.|=+.|.-...|..+|+.|+.+|+ +.+.+..+
T Consensus       196 ~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~  237 (327)
T CHL00144        196 EVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS  237 (327)
T ss_pred             EEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence            345567899999999999999999999999986 66655555


No 23 
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=25.21  E-value=98  Score=28.50  Aligned_cols=45  Identities=22%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             HHHH-HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEe
Q 038360           49 NLAK-RYIQQHDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLT   93 (149)
Q Consensus        49 ~lAk-~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~T   93 (149)
                      .+.+ +.++....|.|=+.|.-...|..+|+.|+.+|+ +.+.+.++
T Consensus       330 ~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~t  376 (464)
T PRK11892        330 PIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRT  376 (464)
T ss_pred             cCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            3455 456677899999999999999999999999987 77776666


No 24 
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=25.01  E-value=89  Score=27.54  Aligned_cols=41  Identities=20%  Similarity=0.313  Sum_probs=33.4

Q ss_pred             HHhccCCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEe
Q 038360           53 RYIQQHDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLT   93 (149)
Q Consensus        53 ~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~T   93 (149)
                      +++...+.|.|=+.|.-...|.+++|.|+.+|+ +.+.+..+
T Consensus       223 ~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~  264 (356)
T PLN02683        223 KIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRS  264 (356)
T ss_pred             EEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            345556789999999999999999999999987 66666555


No 25 
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=24.57  E-value=53  Score=27.39  Aligned_cols=58  Identities=21%  Similarity=0.394  Sum_probs=41.2

Q ss_pred             EEEecCCCchhhHHHHHHHHhccC----CEEEEe---------ecchhHHHHHHHHHHHHhCCcEEEeEEEeeeeee
Q 038360           35 IQVSNTKKPLFFYVNLAKRYIQQH----DEVELS---------ALGMAITTVVTIAEILKNNGLATEKKVLTSTVGM   98 (149)
Q Consensus        35 I~VS~~KKP~~~YV~lAk~~Lq~~----~eV~Ls---------AlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~i   98 (149)
                      .+|-+      -|.+++++||+..    +-|.|+         |+=.+|-.-|..=.-||.+||..+..|-.++-.+
T Consensus       106 ~rVAT------kyp~it~~yf~~~Gi~~~ii~l~GsvElaP~~GlAD~IvDiv~TG~TLr~NgL~~~e~I~~ssa~L  176 (204)
T PRK13584        106 RKIAT------SYVHTAETYFKSKGIDVELIKLNGSVELACVVDMVDGIVDIVQTGTTLKANGLVEKQHISDINARL  176 (204)
T ss_pred             eEEEe------CcHHHHHHHHHHcCCeEEEEECCCceeeccccCCccEEEEEECccHHHHHCCCEEEEEEEeeEEEE
Confidence            56664      4899999999642    222222         3444677778888899999998888888777653


No 26 
>PRK05899 transketolase; Reviewed
Probab=22.38  E-value=1.1e+02  Score=28.74  Aligned_cols=40  Identities=18%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             HhccCCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEe
Q 038360           54 YIQQHDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLT   93 (149)
Q Consensus        54 ~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~T   93 (149)
                      .+.....|.|=+.|.-...|.++|++|+++|+ +.|.++.+
T Consensus       506 ~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~s  546 (624)
T PRK05899        506 VLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPS  546 (624)
T ss_pred             EEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence            34445889999999999999999999999886 55555544


No 27 
>PRK05380 pyrG CTP synthetase; Validated
Probab=20.84  E-value=97  Score=29.42  Aligned_cols=33  Identities=33%  Similarity=0.465  Sum_probs=27.2

Q ss_pred             EEeecchhHHHHHHHHHHHHhCCc-EEEeEEEeee
Q 038360           62 ELSALGMAITTVVTIAEILKNNGL-ATEKKVLTST   95 (149)
Q Consensus        62 ~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Tst   95 (149)
                      ++|+||+-|..| .+.-+||++|+ ++..||+-..
T Consensus        11 v~S~lGKGi~~a-s~g~ll~~~g~~v~~~K~DpYl   44 (533)
T PRK05380         11 VVSSLGKGITAA-SLGRLLKARGLKVTIQKLDPYI   44 (533)
T ss_pred             cccCcchHHHHH-HHHHHHHhCCCceEEEeecccc
Confidence            579999998654 78999999999 8888887643


Done!