Query 038360
Match_columns 149
No_of_seqs 128 out of 165
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:36:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vm0_A Unknown protein; struct 100.0 6.2E-39 2.1E-43 246.0 11.3 110 28-137 16-125 (130)
2 2bky_A DNA/RNA-binding protein 99.9 1.4E-24 4.7E-29 158.6 11.0 90 27-119 4-97 (97)
3 1nh9_A MJA10B, DNA-binding pro 99.9 1.9E-24 6.6E-29 154.9 9.8 84 32-118 2-87 (87)
4 1nfj_A ALBA, conserved hypothe 99.9 2.2E-24 7.4E-29 155.2 10.0 85 31-118 2-89 (89)
5 2h9u_A DNA/RNA-binding protein 99.9 2.8E-23 9.4E-28 153.0 10.6 88 32-121 6-100 (102)
6 3toe_A MTH10B, DNA/RNA-binding 99.9 2.4E-23 8.1E-28 151.2 10.0 85 31-118 3-90 (91)
7 2bky_X DNA/RNA-binding protein 99.9 1.1E-21 3.9E-26 141.4 8.5 83 29-119 3-88 (89)
8 3iab_B Ribonucleases P/MRP pro 98.5 5.9E-07 2E-11 69.5 8.8 70 29-100 27-101 (140)
9 2ek0_A Stage V sporulation pro 76.1 5.7 0.0002 28.4 5.4 46 33-80 2-49 (90)
10 3iab_A Ribonucleases P/MRP pro 73.4 14 0.00046 28.9 7.3 66 57-123 75-149 (158)
11 2vo1_A CTP synthase 1; pyrimid 35.3 20 0.00068 30.5 2.5 31 63-94 33-64 (295)
12 3ju3_A Probable 2-oxoacid ferr 29.8 87 0.003 21.8 4.8 37 58-94 13-50 (118)
13 1umd_B E1-beta, 2-OXO acid deh 27.7 67 0.0023 25.9 4.3 38 56-93 200-238 (324)
14 2c5m_A CTP synthase; cytidine 25.3 26 0.0009 29.7 1.5 33 62-95 32-65 (294)
15 3nva_A CTP synthase; rossman f 25.3 35 0.0012 31.0 2.4 33 62-95 12-45 (535)
16 1w85_B Pyruvate dehydrogenase 22.9 83 0.0029 25.4 4.1 38 56-93 199-237 (324)
17 1o63_A ATP phosphoribosyltrans 22.7 6.1 0.00021 32.0 -2.8 59 34-98 103-174 (219)
18 1ve4_A ATP phosphoribosyltrans 22.0 6.2 0.00021 31.6 -2.8 58 34-97 108-178 (206)
19 1z7m_E ATP phosphoribosyltrans 20.9 25 0.00086 27.9 0.5 59 33-97 109-180 (208)
20 3l84_A Transketolase; TKT, str 20.1 94 0.0032 28.2 4.2 39 55-93 520-561 (632)
No 1
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=100.00 E-value=6.2e-39 Score=246.04 Aligned_cols=110 Identities=70% Similarity=0.944 Sum_probs=91.9
Q ss_pred ccCCccEEEEecCCCchhhHHHHHHHHhccCCEEEEeecchhHHHHHHHHHHHHhCCcEEEeEEEeeeeeeccCCCCeec
Q 038360 28 ESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRFI 107 (149)
Q Consensus 28 ~~~~~N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~i~~e~~Gr~~ 107 (149)
..+++|+|+||++|||+||||+++++||+++++|+|||||+||++||+|||||||||++++++|.|+|+++.++.+||++
T Consensus 16 ~~~~~N~I~Vs~~kkP~~nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~~~~r~v 95 (130)
T 1vm0_A 16 DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPV 95 (130)
T ss_dssp ---CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CE
T ss_pred CCCCCCEEEEecCCCCceeHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccCCCCccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999987678999
Q ss_pred ccceEEEEEeeCcchHHHhhhcCCCCCCCC
Q 038360 108 QKAKIEIVLGKSEKFDSLMIASAPAPAPAL 137 (149)
Q Consensus 108 ~vskIEIvL~Ks~~Fd~~~~~~~~~~~~~~ 137 (149)
++|+|||+|+|+++||++|++++++++.+.
T Consensus 96 ~~skIEI~L~k~~~fd~~~~~~~~~~~~~~ 125 (130)
T 1vm0_A 96 QKAKIEITLVKSEKFDELMAAANEEKEDAE 125 (130)
T ss_dssp EEEEEEEEEEECTTHHHHHHHC--------
T ss_pred ccceEEEEEEecCcHHHHHHHhhhhhcccc
Confidence 999999999999999999999999887643
No 2
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.92 E-value=1.4e-24 Score=158.57 Aligned_cols=90 Identities=26% Similarity=0.329 Sum_probs=77.5
Q ss_pred cccCCccEEEEecCCCchhhHHHHHHHHhc-cCCEEEEeecchhHHHHHHHHHHHHhCCc---EEEeEEEeeeeeeccCC
Q 038360 27 IESHKKNRIQVSNTKKPLFFYVNLAKRYIQ-QHDEVELSALGMAITTVVTIAEILKNNGL---ATEKKVLTSTVGMKDEN 102 (149)
Q Consensus 27 ~~~~~~N~I~VS~~KKP~~~YV~lAk~~Lq-~~~eV~LsAlG~AIs~AV~VAEILKrrgl---a~ikkI~Tst~~i~~e~ 102 (149)
.....+|.|+|++ ||.|+||.++..+|+ |+++|+|||+|+||++||+||||||||++ ..+++|+++|+.+.++
T Consensus 4 ~~~~~~n~I~V~~--k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e- 80 (97)
T 2bky_A 4 GTPTPSNVVLIGK--KPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ- 80 (97)
T ss_dssp -----CCEEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-
T ss_pred ccCCCCCEEEEcC--cCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC-
Confidence 3456789999996 899999999987664 58999999999999999999999999987 4589999999999884
Q ss_pred CCeecccceEEEEEeeC
Q 038360 103 KGRFIQKAKIEIVLGKS 119 (149)
Q Consensus 103 ~Gr~~~vskIEIvL~Ks 119 (149)
+|+.+++|.|||+|.|.
T Consensus 81 ~G~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 81 DGRQSRVSTIEIAIRKK 97 (97)
T ss_dssp TSCEEEEEEEEEEEEEC
T ss_pred CCcEEEeeEEEEEEEcC
Confidence 79888999999999874
No 3
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.91 E-value=1.9e-24 Score=154.88 Aligned_cols=84 Identities=33% Similarity=0.461 Sum_probs=70.7
Q ss_pred ccEEEEecCCCchhhHHHHHHHHhccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeeccc
Q 038360 32 KNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFIQK 109 (149)
Q Consensus 32 ~N~I~VS~~KKP~~~YV~lAk~~Lq~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~~v 109 (149)
+|.|+|++ ||.|+||.++..+|+++++|+|||||+||++||+||||||+|++ ..+++|+++|+.+.++ +|+.+++
T Consensus 2 ~n~I~V~~--k~v~~YV~~~~~~l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-~g~~r~v 78 (87)
T 1nh9_A 2 DNVVLIGK--KPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV 78 (87)
T ss_dssp CSEEEECS--SCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred CCEEEEeC--cchHHHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-CCcEEEe
Confidence 69999997 59999999898766655999999999999999999999999986 6789999999999984 7888899
Q ss_pred ceEEEEEee
Q 038360 110 AKIEIVLGK 118 (149)
Q Consensus 110 skIEIvL~K 118 (149)
|.|||+|.|
T Consensus 79 S~IeI~L~k 87 (87)
T 1nh9_A 79 STIEIVLAK 87 (87)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999986
No 4
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.91 E-value=2.2e-24 Score=155.17 Aligned_cols=85 Identities=34% Similarity=0.456 Sum_probs=76.8
Q ss_pred CccEEEEecCCCchhhHHHHHHHHhc-cCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeec
Q 038360 31 KKNRIQVSNTKKPLFFYVNLAKRYIQ-QHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFI 107 (149)
Q Consensus 31 ~~N~I~VS~~KKP~~~YV~lAk~~Lq-~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~ 107 (149)
.+|.|+|++ ||.|+||.++..+|+ |+++|+|||||+||++||++|||||+|++ +.+++|+++|+.+.++ +|+.+
T Consensus 2 ~~n~I~V~~--k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e-~g~~r 78 (89)
T 1nfj_A 2 AEHVVYVGN--KPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRS 78 (89)
T ss_dssp -CEEEECCS--SCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCC
T ss_pred CCCEEEEcC--CCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcC-CCcEE
Confidence 479999996 899999999987665 58999999999999999999999999986 6789999999999884 78888
Q ss_pred ccceEEEEEee
Q 038360 108 QKAKIEIVLGK 118 (149)
Q Consensus 108 ~vskIEIvL~K 118 (149)
++|.|||+|.|
T Consensus 79 ~vs~IeI~L~k 89 (89)
T 1nfj_A 79 NVSTIEIVLAK 89 (89)
T ss_dssp EEEEEEEEEEC
T ss_pred EeeEEEEEEEC
Confidence 99999999986
No 5
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.89 E-value=2.8e-23 Score=152.98 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=79.0
Q ss_pred ccEEEEecCCCchhhHHHHHH-HHhc-cCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccC-CCCe-
Q 038360 32 KNRIQVSNTKKPLFFYVNLAK-RYIQ-QHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDE-NKGR- 105 (149)
Q Consensus 32 ~N~I~VS~~KKP~~~YV~lAk-~~Lq-~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e-~~Gr- 105 (149)
+|.|+|++ ||.|+||.++. .+|+ ++++|+|||||+||++||+||||||||++ +.+++|+++|+.+.++ .+|+
T Consensus 6 ~n~I~V~~--k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~ 83 (102)
T 2h9u_A 6 APEVRIGR--KPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQT 83 (102)
T ss_dssp CCEEECCS--SCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCE
T ss_pred CCEEEEcC--CCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCcc
Confidence 69999997 89999999998 7775 48999999999999999999999999987 6779999999999884 1576
Q ss_pred -ecccceEEEEEeeCcc
Q 038360 106 -FIQKAKIEIVLGKSEK 121 (149)
Q Consensus 106 -~~~vskIEIvL~Ks~~ 121 (149)
.+++|.|||+|.|.|+
T Consensus 84 ~~r~vS~IeI~Lsk~~~ 100 (102)
T 2h9u_A 84 RTRRVSSIEICLEKAGE 100 (102)
T ss_dssp EEEEEEEEEEEEEECSS
T ss_pred ceeEeeeEEEEEEccCC
Confidence 7899999999999875
No 6
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.89 E-value=2.4e-23 Score=151.24 Aligned_cols=85 Identities=31% Similarity=0.387 Sum_probs=76.3
Q ss_pred CccEEEEecCCCchhhHHHHHHHHh-ccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCeec
Q 038360 31 KKNRIQVSNTKKPLFFYVNLAKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGRFI 107 (149)
Q Consensus 31 ~~N~I~VS~~KKP~~~YV~lAk~~L-q~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr~~ 107 (149)
++|.|+|++ ||.|+||..+..+| +|+++|+|+|+|+||++||+||||||+|++ ..+++|+++|+.+.+ ++|+.+
T Consensus 3 ~~~vv~vg~--Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~-e~G~~r 79 (91)
T 3toe_A 3 EENVVYIGN--KPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIG-NEGTAT 79 (91)
T ss_dssp --CCEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEEC-TTSSEE
T ss_pred ccCEEEECC--CcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeec-CCCcee
Confidence 478999996 99999997777655 578999999999999999999999999988 999999999999987 488888
Q ss_pred ccceEEEEEee
Q 038360 108 QKAKIEIVLGK 118 (149)
Q Consensus 108 ~vskIEIvL~K 118 (149)
++|.|||+|.|
T Consensus 80 ~VS~IeI~L~k 90 (91)
T 3toe_A 80 NVSAIEIQLRK 90 (91)
T ss_dssp EEEEEEEEEEC
T ss_pred EeeEEEEEEEC
Confidence 99999999987
No 7
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.86 E-value=1.1e-21 Score=141.44 Aligned_cols=83 Identities=19% Similarity=0.032 Sum_probs=71.7
Q ss_pred cCCccEEEEecCCCchhhHHHHHHHHh-ccCCEEEEeecchhHHHHHHHHHHHHhCCc--EEEeEEEeeeeeeccCCCCe
Q 038360 29 SHKKNRIQVSNTKKPLFFYVNLAKRYI-QQHDEVELSALGMAITTVVTIAEILKNNGL--ATEKKVLTSTVGMKDENKGR 105 (149)
Q Consensus 29 ~~~~N~I~VS~~KKP~~~YV~lAk~~L-q~~~eV~LsAlG~AIs~AV~VAEILKrrgl--a~ikkI~Tst~~i~~e~~Gr 105 (149)
.+++|.|+|++ ||.|+||..+..+| ++.++|+|||||+||++||++|||||+|++ +.+++|+++++. |+
T Consensus 3 ~~~~~iv~vg~--kpv~nYV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~ 74 (89)
T 2bky_X 3 EKLNEIVVRKT--KNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RD 74 (89)
T ss_dssp -CCEEEECCTT--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ET
T ss_pred CCCCCEEEECC--CCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------Cc
Confidence 47889999996 79999997776544 568999999999999999999999999977 899999999885 34
Q ss_pred ecccceEEEEEeeC
Q 038360 106 FIQKAKIEIVLGKS 119 (149)
Q Consensus 106 ~~~vskIEIvL~Ks 119 (149)
.+++|.|||+|.|.
T Consensus 75 ~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 75 RRRISYILLRLKRV 88 (89)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred ceEeeeEEEEEEec
Confidence 45789999999874
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.9e-07 Score=69.54 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=54.2
Q ss_pred cCCccEEEEecCCCchhhHHHHHHHHhc-----cCCEEEEeecchhHHHHHHHHHHHHhCCcEEEeEEEeeeeeecc
Q 038360 29 SHKKNRIQVSNTKKPLFFYVNLAKRYIQ-----QHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKD 100 (149)
Q Consensus 29 ~~~~N~I~VS~~KKP~~~YV~lAk~~Lq-----~~~eV~LsAlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~i~~ 100 (149)
..-+|.|+|++ +-|.+.=+.=..+||+ +..+|.|+|||+||.+++.+|--+++++- ..-.|.|+|+.+-|
T Consensus 27 ~~~~~~iYV~s-kTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~~-~~V~V~T~TV~vvD 101 (140)
T 3iab_B 27 KQIHTTIFVKS-TTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQKN-KKIEVYTKTIEVLD 101 (140)
T ss_dssp HHHTTEEECCS-SCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTTC-CCEEEEEEEEEEEE
T ss_pred cccCceEEEec-CCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcCC-EEEEEEeceEEEEE
Confidence 33589999998 4477655544447886 47999999999999999999999999853 44568888886543
No 9
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=76.12 E-value=5.7 Score=28.41 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=35.7
Q ss_pred cEEEEecCCCchhhHHHHHH-HHhccCCEEEEeecch-hHHHHHHHHHHH
Q 038360 33 NRIQVSNTKKPLFFYVNLAK-RYIQQHDEVELSALGM-AITTVVTIAEIL 80 (149)
Q Consensus 33 N~I~VS~~KKP~~~YV~lAk-~~Lq~~~eV~LsAlG~-AIs~AV~VAEIL 80 (149)
+.+.||++.+|. ... =|. ..+++.+.|+|.|.|- |++.||...-|-
T Consensus 2 e~LKVSs~S~P~-~VA-GAIA~~lRe~~~veiqAIGa~AvNqAVKAIAIA 49 (90)
T 2ek0_A 2 ETLRVSSKSRPN-SVA-GAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIA 49 (90)
T ss_dssp CEEEECTTCCHH-HHH-HHHHHHHHHHSEEEEEECSHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChH-HHH-HHHHHHHhcCCceEEEEECHHHHHHHHHHHHHH
Confidence 468999988888 333 222 5777889999999998 999999877665
No 10
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=73.41 E-value=14 Score=28.94 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=45.0
Q ss_pred cCCEEEEeecchhHHHHHHHHHHHHhC------CcEEEeEEEeeeeeecc---CCCCeecccceEEEEEeeCcchH
Q 038360 57 QHDEVELSALGMAITTVVTIAEILKNN------GLATEKKVLTSTVGMKD---ENKGRFIQKAKIEIVLGKSEKFD 123 (149)
Q Consensus 57 ~~~eV~LsAlG~AIs~AV~VAEILKrr------gla~ikkI~Tst~~i~~---e~~Gr~~~vskIEIvL~Ks~~Fd 123 (149)
+.+-|.|-+.|..|.+++.+.||+|++ ++.+.-+..-.-. +.. |---+..++|=+-+++.+++.+|
T Consensus 75 ~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~-v~~grNELle~r~~vPILi~~i~~~~~~~ 149 (158)
T 3iab_A 75 LQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDI-KREGRNELQEERLKVPILVTMVSDSEIID 149 (158)
T ss_dssp CEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEE-C-------CCCCEEEEEEEEEEESSSSCC
T ss_pred cCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhcc-CCccccHHHHhhcCCCEEEEEEecccccc
Confidence 568999999999999999999999984 2555544443322 221 11123457888888888887665
No 11
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=35.28 E-value=20 Score=30.48 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=25.7
Q ss_pred EeecchhHHHHHHHHHHHHhCCc-EEEeEEEee
Q 038360 63 LSALGMAITTVVTIAEILKNNGL-ATEKKVLTS 94 (149)
Q Consensus 63 LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Ts 94 (149)
+|+||+-|..| .+.-+||.+|+ +++.||+-.
T Consensus 33 vS~lGKGi~aa-Slg~lLk~~G~~Vt~~K~DPY 64 (295)
T 2vo1_A 33 ISGIGKGIIAS-SVGTILKSCGLHVTSIKIDPY 64 (295)
T ss_dssp SSSSSHHHHHH-HHHHHHHHTTCCEEEEEEECS
T ss_pred ccccccHHHHH-HHHHHHHHCCCcceeeecccc
Confidence 46699999755 68999999999 888888763
No 12
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=29.78 E-value=87 Score=21.81 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEee
Q 038360 58 HDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLTS 94 (149)
Q Consensus 58 ~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Ts 94 (149)
..++.|=+.|.....+..+++.|+.+|+ +.+-++++-
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~ 50 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMF 50 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeE
Confidence 4578888999999999999999999987 666666663
No 13
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=27.72 E-value=67 Score=25.94 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=31.8
Q ss_pred ccCCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEe
Q 038360 56 QQHDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLT 93 (149)
Q Consensus 56 q~~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~T 93 (149)
.+...|.|=+.|.-...+..+++.|+.+|+ +.+-++.+
T Consensus 200 ~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 238 (324)
T 1umd_B 200 REGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT 238 (324)
T ss_dssp ECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred ecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence 445788999999999999999999999987 66666655
No 14
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=25.34 E-value=26 Score=29.74 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=26.8
Q ss_pred EEeecchhHHHHHHHHHHHHhCCc-EEEeEEEeee
Q 038360 62 ELSALGMAITTVVTIAEILKNNGL-ATEKKVLTST 95 (149)
Q Consensus 62 ~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Tst 95 (149)
++|+||+-|.. -.+.-+||.+|+ ++..||+-..
T Consensus 32 VvSglGKGi~a-aSlG~LLk~rG~~Vt~~KiDPYl 65 (294)
T 2c5m_A 32 VISGIGKGIIA-SSVGTILKSCGLHVTSIKIDPYI 65 (294)
T ss_dssp SSTTSCHHHHH-HHHHHHHHTTTCCEECCEEECBC
T ss_pred cccccchHHHH-HHHHHHHHHCCCeeEEEecCCce
Confidence 35899999864 478999999999 8888887643
No 15
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=25.33 E-value=35 Score=31.00 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=27.2
Q ss_pred EEeecchhHHHHHHHHHHHHhCCc-EEEeEEEeee
Q 038360 62 ELSALGMAITTVVTIAEILKNNGL-ATEKKVLTST 95 (149)
Q Consensus 62 ~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~Tst 95 (149)
++|+||+-|.. -.+.-+||++|+ ++..||+-..
T Consensus 12 v~s~lgkgi~~-as~g~ll~~~g~~v~~~k~dpyl 45 (535)
T 3nva_A 12 VLSSVGKGTLV-ASIGMLLKRRGYNVTAVKIDPYI 45 (535)
T ss_dssp CSTTTTHHHHH-HHHHHHHHHTTCCEEEEEEECSS
T ss_pred cccCcchHHHH-HHHHHHHHHCCceEEEEecCcce
Confidence 46899998864 478999999999 8899988643
No 16
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=22.94 E-value=83 Score=25.41 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=31.5
Q ss_pred ccCCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEe
Q 038360 56 QQHDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLT 93 (149)
Q Consensus 56 q~~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~T 93 (149)
.+...|.|=+.|.-...+..+++.|+.+|+ +.+-++++
T Consensus 199 ~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 199 REGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp ECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred ecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 445778899999999999999999999986 66666655
No 17
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=22.69 E-value=6.1 Score=31.97 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=39.5
Q ss_pred EEEEecCCCchhhHHHHHHHHhcc-CCEEEEe------------ecchhHHHHHHHHHHHHhCCcEEEeEEEeeeeee
Q 038360 34 RIQVSNTKKPLFFYVNLAKRYIQQ-HDEVELS------------ALGMAITTVVTIAEILKNNGLATEKKVLTSTVGM 98 (149)
Q Consensus 34 ~I~VS~~KKP~~~YV~lAk~~Lq~-~~eV~Ls------------AlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~i 98 (149)
..+|-+ .|.+++++||++ .-.+.|- |+-.||-.-|..-.-||.+||..+..|-.++-.+
T Consensus 103 ~~RIAT------kyp~l~r~yf~~~Gi~~~Ii~l~GsvE~aP~~GlADaIvDivsTG~TLraNgL~~ie~I~~SsA~L 174 (219)
T 1o63_A 103 EKRIAT------KFPNVTQRYCESKGWHCRIIPLKGSVELAPIAGLSDLIVDITETGRTLKENNLEILDEIFVIRTHV 174 (219)
T ss_dssp CEEEEE------SCHHHHHHHHHHHTCCEEEEECSSCTTHHHHHTSCSEEEEEESSSHHHHHTTEEEEEEEEEEEEEE
T ss_pred CcEEEE------CcHHHHHHHHHHCCCceEEEECCCceeeccCCCCcceeEEeeccHHHHHHCCCEEeeEEeeeEEEE
Confidence 567765 599999999964 2224444 3334455555667789999998888777766643
No 18
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=22.03 E-value=6.2 Score=31.56 Aligned_cols=58 Identities=31% Similarity=0.402 Sum_probs=39.0
Q ss_pred EEEEecCCCchhhHHHHHHHHhccC----CEEEEe---------ecchhHHHHHHHHHHHHhCCcEEEeEEEeeeee
Q 038360 34 RIQVSNTKKPLFFYVNLAKRYIQQH----DEVELS---------ALGMAITTVVTIAEILKNNGLATEKKVLTSTVG 97 (149)
Q Consensus 34 ~I~VS~~KKP~~~YV~lAk~~Lq~~----~eV~Ls---------AlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~ 97 (149)
..+|-+ .|.+++++||.++ +.|.|. |+-.+|-.-|..-.-||.+||..+..|-.++-.
T Consensus 108 ~~RIAT------kyp~l~~~yf~~~gi~~~ii~l~GsvE~ap~~GlAD~IvDivsTG~TLraNgL~~ie~I~~ssA~ 178 (206)
T 1ve4_A 108 IRRVAT------KYPNFTARLLKERGWAADVVELSGNIELAAVTGLADAVVDVVQTGATLRAAGLVEVEVLAHSTAR 178 (206)
T ss_dssp CCEEEE------SCHHHHHHHHHHTTCCCEEEECSSCTHHHHHTTSSSEEEEEESSSHHHHHTTCEEEEEEEEECEE
T ss_pred CCEEEE------CchHHHHHHHHHCCCcEEEEECCCceeeccCCCCceEEEEeccCHHHHHHCCCEEeEEEEeeEEE
Confidence 556654 5999999999642 222222 334456566667788999999888877776654
No 19
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=20.89 E-value=25 Score=27.95 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=40.5
Q ss_pred cEEEEecCCCchhhHHHHHHHHhccC-CEEEEe------------ecchhHHHHHHHHHHHHhCCcEEEeEEEeeeee
Q 038360 33 NRIQVSNTKKPLFFYVNLAKRYIQQH-DEVELS------------ALGMAITTVVTIAEILKNNGLATEKKVLTSTVG 97 (149)
Q Consensus 33 N~I~VS~~KKP~~~YV~lAk~~Lq~~-~eV~Ls------------AlG~AIs~AV~VAEILKrrgla~ikkI~Tst~~ 97 (149)
...+|-+ .|.+++++||.++ -.++|. |+-.+|-.-|..-.-||.+||..+..|-.++-.
T Consensus 109 ~~~RIAT------kyp~l~~~yf~~~gi~~~ii~l~GsvE~ap~~GlAD~IvDivsTG~TLr~NgL~~ie~I~~ssA~ 180 (208)
T 1z7m_E 109 RHKRIAS------KYPRVTKKYFAQKQEDIEIIKLEGSVELGPVVGLADAIVDIVETGNTLSANGLEVIEKISDISTR 180 (208)
T ss_dssp SCEEEEE------SCHHHHHHHHHHTTCCEEEEECSSCTTHHHHTTSCSEEEEEESSSHHHHTTTCEEEEEEEECCEE
T ss_pred CCCEEEE------CchHHHHHHHHHcCCceEEEECCCceeeccCCCcccEEEEEeCChHHHHHCCCEEeEEEEeeEEE
Confidence 4567765 5999999999652 234443 344456666667788999999888777766554
No 20
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=20.14 E-value=94 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.9
Q ss_pred hcc--CCEEEEeecchhHHHHHHHHHHHHhCCc-EEEeEEEe
Q 038360 55 IQQ--HDEVELSALGMAITTVVTIAEILKNNGL-ATEKKVLT 93 (149)
Q Consensus 55 Lq~--~~eV~LsAlG~AIs~AV~VAEILKrrgl-a~ikkI~T 93 (149)
|+. ...|.|=|.|.-...|+.+||.|+.+|+ +.|.+..+
T Consensus 520 l~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~ 561 (632)
T 3l84_A 520 LKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPC 561 (632)
T ss_dssp EECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSB
T ss_pred EEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCc
Confidence 544 5789999999999999999999999997 66666655
Done!