BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038362
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1N0L|B Chain B, Crystal Structure Of The Papd Chaperone (C-Terminally 6x
           Histidine-Tagged) Bound To The Pape Pilus Subunit (N-
           Terminal-Deleted) From Uropathogenic E. Coli
 pdb|1N0L|D Chain D, Crystal Structure Of The Papd Chaperone (C-Terminally 6x
           Histidine-Tagged) Bound To The Pape Pilus Subunit (N-
           Terminal-Deleted) From Uropathogenic E. Coli
 pdb|1N12|A Chain A, Crystal Structure Of The Pape (N-Terminal-Deleted) Pilus
           Subunit Bound To A Peptide Corresponding To The
           N-Terminal Extension Of The Papk Pilus Subunit (Residues
           1-11) From Uropathogenic E. Coli
 pdb|1N12|C Chain C, Crystal Structure Of The Pape (N-Terminal-Deleted) Pilus
           Subunit Bound To A Peptide Corresponding To The
           N-Terminal Extension Of The Papk Pilus Subunit (Residues
           1-11) From Uropathogenic E. Coli
          Length = 138

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 11  LAAIFFHHSRGDVGTAARYGPPFLPTACNGNDQSQ 45
           L    ++ + G++GTA   G PF P    GN+  +
Sbjct: 71  LLVYLYNSNAGNIGTAITLGTPFTPGKITGNNADK 105


>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
 pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
 pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
          Length = 327

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 15  FFHHSRGDVGTAARYGPPFLPTACNGNDQSQFPS 48
           FF H   +   A +  PPF P   +  D SQF S
Sbjct: 279 FFRHINWEELLARKVEPPFKPLLQSEEDVSQFDS 312


>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
          Length = 327

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 15  FFHHSRGDVGTAARYGPPFLPTACNGNDQSQFPS 48
           FF H   +   A +  PPF P   +  D SQF S
Sbjct: 279 FFRHINWEELLARKVEPPFKPLLQSEEDVSQFDS 312


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,396,396
Number of Sequences: 62578
Number of extensions: 125135
Number of successful extensions: 181
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 8
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)