BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038362
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZP41|EGC_CITJA EG45-like domain containing protein OS=Citrus jambhiri GN=CjBAp12
PE=1 SV=1
Length = 131
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 8 LCLLAAIFFHHSRGDVGTAARYGPPFLPTACNGNDQSQFPSGNLFAAAGEGIWDNGASCG 67
+CL+++ + GTA Y PP++P+ACNG G + AAA IW+NGA C
Sbjct: 15 ICLISSAAYASE----GTATFYTPPYVPSACNGYKND----GVMIAAASYAIWNNGAVCN 66
Query: 68 RQYKLRCISAAVSGT---CINNTIQIKIVD 94
+ ++++C A GT C ++ +KIVD
Sbjct: 67 KSFRVKCTGATNQGTPHPCRGGSVLVKIVD 96
>sp|Q9ZV52|EGC2_ARATH EG45-like domain containing protein 2 OS=Arabidopsis thaliana
GN=EGC2 PE=2 SV=2
Length = 130
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 5 LVFLCLLAAIFFHHSRGDVGTAARYGPPFLPTACNGNDQSQFPSGNLFAAAGEGIWDNGA 64
+V + + A I + G A Y PP+ +AC G + L +W NG
Sbjct: 9 VVVMIVFAQILAPIAEAAQGKAVYYDPPYTRSACYGTQRE-----TLVVGVKNNLWQNGR 63
Query: 65 SCGRQYKLRCISAAVS--GTCINNTIQIKIVD 94
+CGR+Y++RCI A + C T+ +K+VD
Sbjct: 64 ACGRRYRVRCIGATYNFDRACTGRTVDVKVVD 95
>sp|Q9M0C2|EGC1_ARATH Putative EG45-like domain containing protein 1 OS=Arabidopsis
thaliana GN=EGC1 PE=3 SV=1
Length = 123
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 1 MHQSLVFLCLLAAIFFHHSRGDVGTAARYGPPFLPTACNGNDQSQFPSGNLFAAAGEGIW 60
M +S+VF + F S G A Y T C Q G + AAA + +W
Sbjct: 1 MSKSIVFFSTVLVFLFSFSYATPGIATFYTSY---TPCYRGTQE----GVMIAAASDTLW 53
Query: 61 DNGASCGRQYKLRCISA--AVSGTCINNTIQIKIVDRAQS 98
DNG CG+ + ++C AV C ++++KIVD S
Sbjct: 54 DNGRVCGKMFTVKCSGPRNAVPHPCTGKSVKVKIVDHCPS 93
>sp|Q10S70|EXLA1_ORYSJ Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1
Length = 279
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 40 GNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDRAQS- 98
G + F G AAAG ++ G CG Y++RC + C N ++ + DRA++
Sbjct: 62 GTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKL---CSNAGARVVVTDRARTN 118
Query: 99 ----LVSTPSL 105
++S+P+
Sbjct: 119 RTGLVLSSPAF 129
>sp|Q336T5|EXPB3_ORYSJ Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2
Length = 268
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 37 ACNGNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDRA 96
AC + +Q+P ++ + E I+ +G CG Y++RC++ C N + I D
Sbjct: 64 ACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA---CSGNPETVIITDMN 120
Query: 97 QSLVS 101
VS
Sbjct: 121 YYPVS 125
>sp|Q9SHY6|EXPB2_ARATH Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=3 SV=2
Length = 273
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 40 GNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDR 95
GN +Q P + +A G ++ +G CG Y+++C S + C N + + I D
Sbjct: 71 GNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA---CSKNPVTVVITDE 123
>sp|Q9D1I6|RM14_MOUSE 39S ribosomal protein L14, mitochondrial OS=Mus musculus GN=Mrpl14
PE=2 SV=1
Length = 145
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 54 AAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDRAQSLVSTP 103
AA G+W + A R + RC S + S + + ++++VD + +L STP
Sbjct: 2 AALTGLWGSFAHVSRAFSQRCFSTSGSLSAVQKMTRVRVVDNS-ALGSTP 50
>sp|Q9LNU3|EXP11_ARATH Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1
Length = 252
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 37 ACNGNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCI 84
AC D G + AA ++++GASCG Y++ C AA S C+
Sbjct: 46 ACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCL 93
>sp|Q9M203|EXPB5_ARATH Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2
Length = 264
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 28 RYGPPFLPTACN-GNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINN 86
R GP AC G+ ++ P + +A G ++ +G CG Y+L+C C
Sbjct: 45 REGPGTTGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKCDHP----LCTKK 100
Query: 87 TIQIKIVDR 95
I++ I D
Sbjct: 101 PIKVMISDE 109
>sp|Q7XCA7|EXPB6_ORYSJ Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1
Length = 275
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 27/112 (24%)
Query: 7 FLCLLAAIFFHHS-RG-----DVGTAARYGPPFLPT------------------ACNGND 42
L +L+ + H S +G +V A+ YG +LP AC +
Sbjct: 12 ILAILSVLVVHGSCKGHPVNYNVSDASAYGSGWLPARATWYGAPTGAGPDDNGGACGFKN 71
Query: 43 QSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVD 94
+Q+P ++ + E I+ +G CG Y++RC +C N + I D
Sbjct: 72 VNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDP---SCSGNIETVIITD 120
>sp|Q0DZ85|EXB16_ORYSJ Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1
Length = 272
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 22/111 (19%)
Query: 3 QSLVFLCLLAAIFFHHSRGDVGTAARY-GPPFLPTAC--------NGNDQSQFPSGNLF- 52
+S++F+ LL+A F S G+ G A R P + P +G+D G L
Sbjct: 15 RSVLFVSLLSAAFVFDS-GEAGAAHRVVDPEWHPATATWYGSADGDGSDGGACGYGTLVD 73
Query: 53 --------AAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDR 95
A ++ G CG YK+RC+ A++ C + + + D
Sbjct: 74 VVPMKTRVGAVSPVLFKGGEGCGACYKVRCLDASI---CSRRAVTVIVTDE 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,209,240
Number of Sequences: 539616
Number of extensions: 1540900
Number of successful extensions: 2332
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2307
Number of HSP's gapped (non-prelim): 37
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)